Multiple sequence alignment - TraesCS1A01G396900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G396900 chr1A 100.000 2679 0 0 1 2679 562901349 562904027 0.000000e+00 4948
1 TraesCS1A01G396900 chr1B 92.677 2144 99 24 561 2670 649669619 649671738 0.000000e+00 3037
2 TraesCS1A01G396900 chr1D 90.741 2322 132 33 410 2679 469794819 469797109 0.000000e+00 3020
3 TraesCS1A01G396900 chr6D 89.571 978 69 15 1105 2067 17043028 17042069 0.000000e+00 1210
4 TraesCS1A01G396900 chr7B 88.756 1005 72 20 1076 2067 722094289 722095265 0.000000e+00 1192
5 TraesCS1A01G396900 chr5B 88.730 976 77 19 1105 2064 328273747 328274705 0.000000e+00 1162
6 TraesCS1A01G396900 chr3B 88.595 982 76 18 1102 2067 379653675 379654636 0.000000e+00 1160
7 TraesCS1A01G396900 chr3B 87.959 980 83 13 1105 2067 367032526 367031565 0.000000e+00 1123
8 TraesCS1A01G396900 chr6B 88.391 982 79 17 1102 2067 129701046 129702008 0.000000e+00 1149
9 TraesCS1A01G396900 chr6B 92.147 191 6 4 1613 1800 578775366 578775550 7.360000e-66 261
10 TraesCS1A01G396900 chr3A 88.037 978 83 17 1105 2067 128659224 128658266 0.000000e+00 1127
11 TraesCS1A01G396900 chr2A 87.666 981 87 16 1102 2067 276858821 276859782 0.000000e+00 1110
12 TraesCS1A01G396900 chr4A 86.892 1007 93 19 1076 2067 566610379 566609397 0.000000e+00 1092
13 TraesCS1A01G396900 chr5A 86.693 1007 84 20 1076 2067 69536089 69537060 0.000000e+00 1072
14 TraesCS1A01G396900 chr6A 88.649 696 53 13 1380 2067 214075708 214075031 0.000000e+00 824
15 TraesCS1A01G396900 chr7D 93.684 190 6 3 1613 1800 561875902 561876087 2.030000e-71 279


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G396900 chr1A 562901349 562904027 2678 False 4948 4948 100.000 1 2679 1 chr1A.!!$F1 2678
1 TraesCS1A01G396900 chr1B 649669619 649671738 2119 False 3037 3037 92.677 561 2670 1 chr1B.!!$F1 2109
2 TraesCS1A01G396900 chr1D 469794819 469797109 2290 False 3020 3020 90.741 410 2679 1 chr1D.!!$F1 2269
3 TraesCS1A01G396900 chr6D 17042069 17043028 959 True 1210 1210 89.571 1105 2067 1 chr6D.!!$R1 962
4 TraesCS1A01G396900 chr7B 722094289 722095265 976 False 1192 1192 88.756 1076 2067 1 chr7B.!!$F1 991
5 TraesCS1A01G396900 chr5B 328273747 328274705 958 False 1162 1162 88.730 1105 2064 1 chr5B.!!$F1 959
6 TraesCS1A01G396900 chr3B 379653675 379654636 961 False 1160 1160 88.595 1102 2067 1 chr3B.!!$F1 965
7 TraesCS1A01G396900 chr3B 367031565 367032526 961 True 1123 1123 87.959 1105 2067 1 chr3B.!!$R1 962
8 TraesCS1A01G396900 chr6B 129701046 129702008 962 False 1149 1149 88.391 1102 2067 1 chr6B.!!$F1 965
9 TraesCS1A01G396900 chr3A 128658266 128659224 958 True 1127 1127 88.037 1105 2067 1 chr3A.!!$R1 962
10 TraesCS1A01G396900 chr2A 276858821 276859782 961 False 1110 1110 87.666 1102 2067 1 chr2A.!!$F1 965
11 TraesCS1A01G396900 chr4A 566609397 566610379 982 True 1092 1092 86.892 1076 2067 1 chr4A.!!$R1 991
12 TraesCS1A01G396900 chr5A 69536089 69537060 971 False 1072 1072 86.693 1076 2067 1 chr5A.!!$F1 991
13 TraesCS1A01G396900 chr6A 214075031 214075708 677 True 824 824 88.649 1380 2067 1 chr6A.!!$R1 687

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.033405 AGCCAGCTTCATCTTGCCAT 60.033 50.0 0.0 0.0 0.0 4.40 F
354 355 0.035317 GCAGTGGTGTGGATGTGAGA 59.965 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 1631 0.373716 CGTACGTCCGTAGTACCACC 59.626 60.0 7.22 0.00 40.83 4.61 R
2097 2155 0.039256 GGTGAACCGTACGTGTAGCA 60.039 55.0 15.21 10.45 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.191078 ACTGAACTCATATCAGCCAGC 57.809 47.619 3.57 0.00 46.56 4.85
22 23 2.770802 ACTGAACTCATATCAGCCAGCT 59.229 45.455 3.57 0.00 46.56 4.24
23 24 3.199508 ACTGAACTCATATCAGCCAGCTT 59.800 43.478 3.57 0.00 46.56 3.74
24 25 3.801698 TGAACTCATATCAGCCAGCTTC 58.198 45.455 0.00 0.00 0.00 3.86
25 26 3.198417 TGAACTCATATCAGCCAGCTTCA 59.802 43.478 0.00 0.00 0.00 3.02
26 27 4.141551 TGAACTCATATCAGCCAGCTTCAT 60.142 41.667 0.00 0.00 0.00 2.57
27 28 4.005487 ACTCATATCAGCCAGCTTCATC 57.995 45.455 0.00 0.00 0.00 2.92
28 29 3.647113 ACTCATATCAGCCAGCTTCATCT 59.353 43.478 0.00 0.00 0.00 2.90
29 30 4.102838 ACTCATATCAGCCAGCTTCATCTT 59.897 41.667 0.00 0.00 0.00 2.40
30 31 4.386711 TCATATCAGCCAGCTTCATCTTG 58.613 43.478 0.00 0.00 0.00 3.02
31 32 1.390565 ATCAGCCAGCTTCATCTTGC 58.609 50.000 0.00 0.00 0.00 4.01
32 33 0.679002 TCAGCCAGCTTCATCTTGCC 60.679 55.000 0.00 0.00 0.00 4.52
33 34 0.963856 CAGCCAGCTTCATCTTGCCA 60.964 55.000 0.00 0.00 0.00 4.92
34 35 0.033405 AGCCAGCTTCATCTTGCCAT 60.033 50.000 0.00 0.00 0.00 4.40
35 36 0.822164 GCCAGCTTCATCTTGCCATT 59.178 50.000 0.00 0.00 0.00 3.16
36 37 1.206371 GCCAGCTTCATCTTGCCATTT 59.794 47.619 0.00 0.00 0.00 2.32
37 38 2.354403 GCCAGCTTCATCTTGCCATTTT 60.354 45.455 0.00 0.00 0.00 1.82
38 39 3.867216 GCCAGCTTCATCTTGCCATTTTT 60.867 43.478 0.00 0.00 0.00 1.94
39 40 3.930848 CCAGCTTCATCTTGCCATTTTTC 59.069 43.478 0.00 0.00 0.00 2.29
40 41 4.561938 CCAGCTTCATCTTGCCATTTTTCA 60.562 41.667 0.00 0.00 0.00 2.69
41 42 5.175859 CAGCTTCATCTTGCCATTTTTCAT 58.824 37.500 0.00 0.00 0.00 2.57
42 43 5.291128 CAGCTTCATCTTGCCATTTTTCATC 59.709 40.000 0.00 0.00 0.00 2.92
43 44 4.266976 GCTTCATCTTGCCATTTTTCATCG 59.733 41.667 0.00 0.00 0.00 3.84
44 45 5.641783 TTCATCTTGCCATTTTTCATCGA 57.358 34.783 0.00 0.00 0.00 3.59
45 46 4.985413 TCATCTTGCCATTTTTCATCGAC 58.015 39.130 0.00 0.00 0.00 4.20
46 47 4.701651 TCATCTTGCCATTTTTCATCGACT 59.298 37.500 0.00 0.00 0.00 4.18
47 48 5.879777 TCATCTTGCCATTTTTCATCGACTA 59.120 36.000 0.00 0.00 0.00 2.59
48 49 6.543465 TCATCTTGCCATTTTTCATCGACTAT 59.457 34.615 0.00 0.00 0.00 2.12
49 50 6.363577 TCTTGCCATTTTTCATCGACTATC 57.636 37.500 0.00 0.00 0.00 2.08
50 51 5.879777 TCTTGCCATTTTTCATCGACTATCA 59.120 36.000 0.00 0.00 0.00 2.15
51 52 6.374053 TCTTGCCATTTTTCATCGACTATCAA 59.626 34.615 0.00 0.00 0.00 2.57
52 53 6.698008 TGCCATTTTTCATCGACTATCAAT 57.302 33.333 0.00 0.00 0.00 2.57
53 54 7.099266 TGCCATTTTTCATCGACTATCAATT 57.901 32.000 0.00 0.00 0.00 2.32
54 55 7.546358 TGCCATTTTTCATCGACTATCAATTT 58.454 30.769 0.00 0.00 0.00 1.82
55 56 7.701924 TGCCATTTTTCATCGACTATCAATTTC 59.298 33.333 0.00 0.00 0.00 2.17
56 57 7.701924 GCCATTTTTCATCGACTATCAATTTCA 59.298 33.333 0.00 0.00 0.00 2.69
57 58 9.571810 CCATTTTTCATCGACTATCAATTTCAA 57.428 29.630 0.00 0.00 0.00 2.69
59 60 8.653984 TTTTTCATCGACTATCAATTTCAACG 57.346 30.769 0.00 0.00 0.00 4.10
60 61 6.961359 TTCATCGACTATCAATTTCAACGT 57.039 33.333 0.00 0.00 0.00 3.99
61 62 6.331170 TCATCGACTATCAATTTCAACGTG 57.669 37.500 0.00 0.00 0.00 4.49
62 63 6.096695 TCATCGACTATCAATTTCAACGTGA 58.903 36.000 0.00 0.00 0.00 4.35
63 64 6.588373 TCATCGACTATCAATTTCAACGTGAA 59.412 34.615 0.00 0.00 34.03 3.18
64 65 6.389622 TCGACTATCAATTTCAACGTGAAG 57.610 37.500 0.00 0.00 37.70 3.02
65 66 6.153756 TCGACTATCAATTTCAACGTGAAGA 58.846 36.000 0.00 0.00 37.70 2.87
66 67 6.811665 TCGACTATCAATTTCAACGTGAAGAT 59.188 34.615 0.00 0.00 37.70 2.40
67 68 7.330946 TCGACTATCAATTTCAACGTGAAGATT 59.669 33.333 0.00 0.00 37.70 2.40
68 69 7.957484 CGACTATCAATTTCAACGTGAAGATTT 59.043 33.333 0.00 0.00 37.70 2.17
69 70 9.612620 GACTATCAATTTCAACGTGAAGATTTT 57.387 29.630 0.00 0.00 37.70 1.82
70 71 9.398170 ACTATCAATTTCAACGTGAAGATTTTG 57.602 29.630 0.00 0.00 37.70 2.44
71 72 9.398170 CTATCAATTTCAACGTGAAGATTTTGT 57.602 29.630 0.00 0.00 37.70 2.83
73 74 8.781067 TCAATTTCAACGTGAAGATTTTGTAG 57.219 30.769 0.00 0.00 37.70 2.74
74 75 7.378461 TCAATTTCAACGTGAAGATTTTGTAGC 59.622 33.333 0.00 0.00 37.70 3.58
75 76 6.371809 TTTCAACGTGAAGATTTTGTAGCT 57.628 33.333 0.00 0.00 37.70 3.32
76 77 5.591643 TCAACGTGAAGATTTTGTAGCTC 57.408 39.130 0.00 0.00 0.00 4.09
77 78 5.053811 TCAACGTGAAGATTTTGTAGCTCA 58.946 37.500 0.00 0.00 0.00 4.26
78 79 5.700832 TCAACGTGAAGATTTTGTAGCTCAT 59.299 36.000 0.00 0.00 0.00 2.90
79 80 5.786401 ACGTGAAGATTTTGTAGCTCATC 57.214 39.130 0.00 0.00 0.00 2.92
80 81 4.631813 ACGTGAAGATTTTGTAGCTCATCC 59.368 41.667 0.00 0.00 0.00 3.51
81 82 4.631377 CGTGAAGATTTTGTAGCTCATCCA 59.369 41.667 0.00 0.00 0.00 3.41
82 83 5.446473 CGTGAAGATTTTGTAGCTCATCCAC 60.446 44.000 0.00 0.00 0.00 4.02
83 84 4.631377 TGAAGATTTTGTAGCTCATCCACG 59.369 41.667 0.00 0.00 0.00 4.94
84 85 4.471904 AGATTTTGTAGCTCATCCACGA 57.528 40.909 0.00 0.00 0.00 4.35
85 86 4.832248 AGATTTTGTAGCTCATCCACGAA 58.168 39.130 0.00 0.00 0.00 3.85
86 87 4.872691 AGATTTTGTAGCTCATCCACGAAG 59.127 41.667 0.00 0.00 0.00 3.79
87 88 2.672961 TTGTAGCTCATCCACGAAGG 57.327 50.000 0.00 0.00 39.47 3.46
97 98 2.743636 TCCACGAAGGATGTCACTTC 57.256 50.000 0.00 0.00 43.07 3.01
98 99 1.275291 TCCACGAAGGATGTCACTTCC 59.725 52.381 1.18 1.18 43.07 3.46
99 100 1.276421 CCACGAAGGATGTCACTTCCT 59.724 52.381 6.41 6.41 45.70 3.36
100 101 2.611518 CACGAAGGATGTCACTTCCTC 58.388 52.381 12.58 6.03 42.90 3.71
101 102 2.029020 CACGAAGGATGTCACTTCCTCA 60.029 50.000 12.58 0.00 42.90 3.86
102 103 2.632996 ACGAAGGATGTCACTTCCTCAA 59.367 45.455 12.58 0.00 42.90 3.02
103 104 3.261897 ACGAAGGATGTCACTTCCTCAAT 59.738 43.478 12.58 0.00 42.90 2.57
104 105 4.256920 CGAAGGATGTCACTTCCTCAATT 58.743 43.478 12.58 0.00 42.90 2.32
105 106 5.046591 ACGAAGGATGTCACTTCCTCAATTA 60.047 40.000 12.58 0.00 42.90 1.40
106 107 5.292101 CGAAGGATGTCACTTCCTCAATTAC 59.708 44.000 12.58 1.31 42.90 1.89
107 108 4.759782 AGGATGTCACTTCCTCAATTACG 58.240 43.478 6.41 0.00 39.46 3.18
108 109 4.223032 AGGATGTCACTTCCTCAATTACGT 59.777 41.667 6.41 0.00 39.46 3.57
109 110 4.567159 GGATGTCACTTCCTCAATTACGTC 59.433 45.833 2.31 0.00 0.00 4.34
110 111 3.571571 TGTCACTTCCTCAATTACGTCG 58.428 45.455 0.00 0.00 0.00 5.12
111 112 3.005050 TGTCACTTCCTCAATTACGTCGT 59.995 43.478 2.21 2.21 0.00 4.34
112 113 3.607209 GTCACTTCCTCAATTACGTCGTC 59.393 47.826 0.00 0.00 0.00 4.20
113 114 2.592897 CACTTCCTCAATTACGTCGTCG 59.407 50.000 0.00 0.00 43.34 5.12
114 115 2.182825 CTTCCTCAATTACGTCGTCGG 58.817 52.381 0.00 0.00 41.85 4.79
115 116 1.452110 TCCTCAATTACGTCGTCGGA 58.548 50.000 0.00 0.00 41.85 4.55
116 117 1.811965 TCCTCAATTACGTCGTCGGAA 59.188 47.619 0.00 1.40 44.31 4.30
117 118 2.228582 TCCTCAATTACGTCGTCGGAAA 59.771 45.455 3.35 0.00 43.38 3.13
118 119 2.988493 CCTCAATTACGTCGTCGGAAAA 59.012 45.455 3.35 0.00 43.38 2.29
119 120 3.429543 CCTCAATTACGTCGTCGGAAAAA 59.570 43.478 3.35 0.00 43.38 1.94
136 137 1.767759 AAAAGGCATTCCCTCGATGG 58.232 50.000 0.00 0.00 45.62 3.51
145 146 2.202797 CCTCGATGGGAGTGCACG 60.203 66.667 12.01 0.00 41.46 5.34
146 147 2.202797 CTCGATGGGAGTGCACGG 60.203 66.667 12.01 0.00 38.02 4.94
147 148 3.723235 CTCGATGGGAGTGCACGGG 62.723 68.421 12.01 0.00 38.02 5.28
148 149 4.082523 CGATGGGAGTGCACGGGT 62.083 66.667 12.01 0.00 0.00 5.28
149 150 2.125106 GATGGGAGTGCACGGGTC 60.125 66.667 12.01 3.36 0.00 4.46
150 151 2.607750 ATGGGAGTGCACGGGTCT 60.608 61.111 12.01 0.00 0.00 3.85
151 152 2.185310 GATGGGAGTGCACGGGTCTT 62.185 60.000 12.01 1.23 0.00 3.01
152 153 2.047179 GGGAGTGCACGGGTCTTC 60.047 66.667 12.01 1.73 0.00 2.87
153 154 2.741092 GGAGTGCACGGGTCTTCA 59.259 61.111 12.01 0.00 0.00 3.02
154 155 1.374758 GGAGTGCACGGGTCTTCAG 60.375 63.158 12.01 0.00 0.00 3.02
155 156 1.367840 GAGTGCACGGGTCTTCAGT 59.632 57.895 12.01 0.00 0.00 3.41
156 157 0.667792 GAGTGCACGGGTCTTCAGTC 60.668 60.000 12.01 0.00 0.00 3.51
157 158 2.022129 GTGCACGGGTCTTCAGTCG 61.022 63.158 0.00 0.00 0.00 4.18
158 159 2.197605 TGCACGGGTCTTCAGTCGA 61.198 57.895 0.00 0.00 0.00 4.20
159 160 1.006571 GCACGGGTCTTCAGTCGAA 60.007 57.895 0.00 0.00 0.00 3.71
160 161 0.599204 GCACGGGTCTTCAGTCGAAA 60.599 55.000 0.00 0.00 0.00 3.46
161 162 1.137513 CACGGGTCTTCAGTCGAAAC 58.862 55.000 0.00 0.00 0.00 2.78
162 163 0.748450 ACGGGTCTTCAGTCGAAACA 59.252 50.000 0.00 0.00 0.00 2.83
163 164 1.343465 ACGGGTCTTCAGTCGAAACAT 59.657 47.619 0.00 0.00 0.00 2.71
164 165 1.993370 CGGGTCTTCAGTCGAAACATC 59.007 52.381 0.00 0.00 0.00 3.06
165 166 2.347731 GGGTCTTCAGTCGAAACATCC 58.652 52.381 0.00 0.00 0.00 3.51
166 167 2.289444 GGGTCTTCAGTCGAAACATCCA 60.289 50.000 0.00 0.00 0.00 3.41
167 168 3.600388 GGTCTTCAGTCGAAACATCCAT 58.400 45.455 0.00 0.00 0.00 3.41
168 169 3.372206 GGTCTTCAGTCGAAACATCCATG 59.628 47.826 0.00 0.00 0.00 3.66
169 170 4.245660 GTCTTCAGTCGAAACATCCATGA 58.754 43.478 0.00 0.00 0.00 3.07
170 171 4.328440 GTCTTCAGTCGAAACATCCATGAG 59.672 45.833 0.00 0.00 0.00 2.90
171 172 4.220602 TCTTCAGTCGAAACATCCATGAGA 59.779 41.667 0.00 0.00 0.00 3.27
172 173 4.743057 TCAGTCGAAACATCCATGAGAT 57.257 40.909 0.00 0.00 34.66 2.75
173 174 4.686972 TCAGTCGAAACATCCATGAGATC 58.313 43.478 0.00 0.00 30.59 2.75
174 175 3.488678 CAGTCGAAACATCCATGAGATCG 59.511 47.826 0.00 0.00 30.59 3.69
175 176 3.381590 AGTCGAAACATCCATGAGATCGA 59.618 43.478 0.00 10.06 37.35 3.59
176 177 3.733224 GTCGAAACATCCATGAGATCGAG 59.267 47.826 12.77 0.00 38.84 4.04
177 178 3.055591 CGAAACATCCATGAGATCGAGG 58.944 50.000 0.00 0.00 34.91 4.63
178 179 3.243535 CGAAACATCCATGAGATCGAGGA 60.244 47.826 0.00 0.00 34.91 3.71
179 180 4.560311 CGAAACATCCATGAGATCGAGGAT 60.560 45.833 0.00 5.73 41.40 3.24
180 181 5.335976 CGAAACATCCATGAGATCGAGGATA 60.336 44.000 9.80 0.00 38.77 2.59
181 182 5.657826 AACATCCATGAGATCGAGGATAG 57.342 43.478 9.80 7.99 38.77 2.08
182 183 4.928263 ACATCCATGAGATCGAGGATAGA 58.072 43.478 9.80 0.00 38.77 1.98
183 184 5.517924 ACATCCATGAGATCGAGGATAGAT 58.482 41.667 9.80 0.00 38.77 1.98
184 185 5.360429 ACATCCATGAGATCGAGGATAGATG 59.640 44.000 9.80 5.50 38.77 2.90
185 186 4.928263 TCCATGAGATCGAGGATAGATGT 58.072 43.478 0.00 0.00 27.69 3.06
186 187 6.067217 TCCATGAGATCGAGGATAGATGTA 57.933 41.667 0.00 0.00 27.69 2.29
187 188 6.118852 TCCATGAGATCGAGGATAGATGTAG 58.881 44.000 0.00 0.00 27.69 2.74
188 189 5.299028 CCATGAGATCGAGGATAGATGTAGG 59.701 48.000 0.00 0.00 27.69 3.18
189 190 5.763876 TGAGATCGAGGATAGATGTAGGA 57.236 43.478 0.00 0.00 27.69 2.94
190 191 6.320434 TGAGATCGAGGATAGATGTAGGAT 57.680 41.667 0.00 0.00 27.69 3.24
191 192 6.118852 TGAGATCGAGGATAGATGTAGGATG 58.881 44.000 0.00 0.00 27.69 3.51
192 193 6.069963 TGAGATCGAGGATAGATGTAGGATGA 60.070 42.308 0.00 0.00 27.69 2.92
193 194 6.726379 AGATCGAGGATAGATGTAGGATGAA 58.274 40.000 0.00 0.00 27.69 2.57
194 195 7.178573 AGATCGAGGATAGATGTAGGATGAAA 58.821 38.462 0.00 0.00 27.69 2.69
195 196 7.838696 AGATCGAGGATAGATGTAGGATGAAAT 59.161 37.037 0.00 0.00 27.69 2.17
196 197 9.126151 GATCGAGGATAGATGTAGGATGAAATA 57.874 37.037 0.00 0.00 27.69 1.40
197 198 8.879427 TCGAGGATAGATGTAGGATGAAATAA 57.121 34.615 0.00 0.00 0.00 1.40
198 199 9.480861 TCGAGGATAGATGTAGGATGAAATAAT 57.519 33.333 0.00 0.00 0.00 1.28
219 220 9.981460 AATAATTCAAATTCTCCTTCAGTAGGT 57.019 29.630 0.00 0.00 45.03 3.08
220 221 9.981460 ATAATTCAAATTCTCCTTCAGTAGGTT 57.019 29.630 0.00 0.00 45.03 3.50
221 222 8.712228 AATTCAAATTCTCCTTCAGTAGGTTT 57.288 30.769 0.00 0.00 45.03 3.27
222 223 8.712228 ATTCAAATTCTCCTTCAGTAGGTTTT 57.288 30.769 0.00 0.00 45.03 2.43
223 224 7.510549 TCAAATTCTCCTTCAGTAGGTTTTG 57.489 36.000 0.00 1.57 45.03 2.44
224 225 7.287061 TCAAATTCTCCTTCAGTAGGTTTTGA 58.713 34.615 9.77 9.77 45.03 2.69
225 226 7.777910 TCAAATTCTCCTTCAGTAGGTTTTGAA 59.222 33.333 10.67 5.58 45.03 2.69
226 227 7.751768 AATTCTCCTTCAGTAGGTTTTGAAG 57.248 36.000 7.14 7.14 46.19 3.02
233 234 5.623956 TCAGTAGGTTTTGAAGAGGAACA 57.376 39.130 0.00 0.00 0.00 3.18
234 235 6.187727 TCAGTAGGTTTTGAAGAGGAACAT 57.812 37.500 0.00 0.00 0.00 2.71
235 236 6.601332 TCAGTAGGTTTTGAAGAGGAACATT 58.399 36.000 0.00 0.00 0.00 2.71
236 237 6.710744 TCAGTAGGTTTTGAAGAGGAACATTC 59.289 38.462 0.00 0.00 0.00 2.67
237 238 5.701290 AGTAGGTTTTGAAGAGGAACATTCG 59.299 40.000 0.00 0.00 0.00 3.34
238 239 3.821033 AGGTTTTGAAGAGGAACATTCGG 59.179 43.478 0.00 0.00 0.00 4.30
239 240 3.565516 GTTTTGAAGAGGAACATTCGGC 58.434 45.455 0.00 0.00 0.00 5.54
240 241 2.559698 TTGAAGAGGAACATTCGGCA 57.440 45.000 0.00 0.00 0.00 5.69
241 242 2.559698 TGAAGAGGAACATTCGGCAA 57.440 45.000 0.00 0.00 0.00 4.52
242 243 2.857483 TGAAGAGGAACATTCGGCAAA 58.143 42.857 0.00 0.00 0.00 3.68
243 244 2.813754 TGAAGAGGAACATTCGGCAAAG 59.186 45.455 0.00 0.00 0.00 2.77
244 245 1.168714 AGAGGAACATTCGGCAAAGC 58.831 50.000 0.00 0.00 0.00 3.51
245 246 1.168714 GAGGAACATTCGGCAAAGCT 58.831 50.000 0.00 0.00 0.00 3.74
246 247 1.131315 GAGGAACATTCGGCAAAGCTC 59.869 52.381 0.00 0.00 0.00 4.09
247 248 1.168714 GGAACATTCGGCAAAGCTCT 58.831 50.000 0.00 0.00 0.00 4.09
248 249 1.131315 GGAACATTCGGCAAAGCTCTC 59.869 52.381 0.00 0.00 0.00 3.20
249 250 2.079925 GAACATTCGGCAAAGCTCTCT 58.920 47.619 0.00 0.00 0.00 3.10
250 251 2.191128 ACATTCGGCAAAGCTCTCTT 57.809 45.000 0.00 0.00 0.00 2.85
251 252 1.808945 ACATTCGGCAAAGCTCTCTTG 59.191 47.619 0.00 0.00 31.78 3.02
252 253 0.807496 ATTCGGCAAAGCTCTCTTGC 59.193 50.000 12.28 12.28 31.78 4.01
253 254 1.237285 TTCGGCAAAGCTCTCTTGCC 61.237 55.000 24.77 24.77 40.21 4.52
254 255 2.873288 GGCAAAGCTCTCTTGCCG 59.127 61.111 21.61 0.00 37.04 5.69
255 256 1.672356 GGCAAAGCTCTCTTGCCGA 60.672 57.895 21.61 0.00 37.04 5.54
256 257 1.642952 GGCAAAGCTCTCTTGCCGAG 61.643 60.000 21.61 0.00 41.30 4.63
257 258 1.642952 GCAAAGCTCTCTTGCCGAGG 61.643 60.000 9.98 0.00 40.30 4.63
258 259 0.321122 CAAAGCTCTCTTGCCGAGGT 60.321 55.000 0.00 0.00 40.64 3.85
259 260 1.066858 CAAAGCTCTCTTGCCGAGGTA 60.067 52.381 0.00 0.00 38.19 3.08
260 261 0.533032 AAGCTCTCTTGCCGAGGTAC 59.467 55.000 0.00 0.00 38.19 3.34
261 262 1.226717 GCTCTCTTGCCGAGGTACG 60.227 63.158 0.89 0.00 40.30 3.67
262 263 1.935327 GCTCTCTTGCCGAGGTACGT 61.935 60.000 0.00 0.00 40.30 3.57
263 264 0.526662 CTCTCTTGCCGAGGTACGTT 59.473 55.000 0.00 0.00 40.30 3.99
264 265 1.741706 CTCTCTTGCCGAGGTACGTTA 59.258 52.381 0.00 0.00 40.30 3.18
265 266 2.358267 CTCTCTTGCCGAGGTACGTTAT 59.642 50.000 0.00 0.00 40.30 1.89
266 267 3.544684 TCTCTTGCCGAGGTACGTTATA 58.455 45.455 0.00 0.00 40.30 0.98
267 268 3.313526 TCTCTTGCCGAGGTACGTTATAC 59.686 47.826 0.00 0.00 40.30 1.47
268 269 3.282021 TCTTGCCGAGGTACGTTATACT 58.718 45.455 0.00 0.00 40.78 2.12
269 270 3.696051 TCTTGCCGAGGTACGTTATACTT 59.304 43.478 0.00 0.00 40.78 2.24
270 271 3.698029 TGCCGAGGTACGTTATACTTC 57.302 47.619 0.00 0.00 40.78 3.01
271 272 3.282021 TGCCGAGGTACGTTATACTTCT 58.718 45.455 0.00 0.00 40.78 2.85
272 273 4.450976 TGCCGAGGTACGTTATACTTCTA 58.549 43.478 0.00 0.00 40.78 2.10
273 274 4.273480 TGCCGAGGTACGTTATACTTCTAC 59.727 45.833 0.00 0.00 40.78 2.59
274 275 4.609336 GCCGAGGTACGTTATACTTCTACG 60.609 50.000 0.00 0.00 40.78 3.51
275 276 4.449779 CGAGGTACGTTATACTTCTACGC 58.550 47.826 0.00 0.00 38.77 4.42
276 277 4.609336 CGAGGTACGTTATACTTCTACGCC 60.609 50.000 0.00 0.00 38.77 5.68
277 278 4.199310 AGGTACGTTATACTTCTACGCCA 58.801 43.478 0.00 0.00 38.77 5.69
278 279 4.274459 AGGTACGTTATACTTCTACGCCAG 59.726 45.833 0.00 0.00 38.77 4.85
279 280 4.273480 GGTACGTTATACTTCTACGCCAGA 59.727 45.833 0.00 0.00 38.77 3.86
280 281 4.548991 ACGTTATACTTCTACGCCAGAG 57.451 45.455 0.00 0.00 38.77 3.35
281 282 4.194640 ACGTTATACTTCTACGCCAGAGA 58.805 43.478 0.00 0.00 38.77 3.10
282 283 4.637534 ACGTTATACTTCTACGCCAGAGAA 59.362 41.667 0.00 0.00 38.77 2.87
283 284 5.124457 ACGTTATACTTCTACGCCAGAGAAA 59.876 40.000 0.00 0.00 38.77 2.52
284 285 6.183360 ACGTTATACTTCTACGCCAGAGAAAT 60.183 38.462 0.00 0.00 38.77 2.17
285 286 6.696148 CGTTATACTTCTACGCCAGAGAAATT 59.304 38.462 0.00 0.00 33.83 1.82
286 287 7.859377 CGTTATACTTCTACGCCAGAGAAATTA 59.141 37.037 0.00 0.00 33.83 1.40
287 288 9.525409 GTTATACTTCTACGCCAGAGAAATTAA 57.475 33.333 0.00 0.00 33.83 1.40
290 291 7.541122 ACTTCTACGCCAGAGAAATTAAATC 57.459 36.000 0.00 0.00 33.83 2.17
291 292 7.103641 ACTTCTACGCCAGAGAAATTAAATCA 58.896 34.615 0.00 0.00 33.83 2.57
292 293 7.770897 ACTTCTACGCCAGAGAAATTAAATCAT 59.229 33.333 0.00 0.00 33.83 2.45
293 294 7.715265 TCTACGCCAGAGAAATTAAATCATC 57.285 36.000 0.00 0.00 0.00 2.92
294 295 7.500992 TCTACGCCAGAGAAATTAAATCATCT 58.499 34.615 0.00 0.00 0.00 2.90
295 296 6.369059 ACGCCAGAGAAATTAAATCATCTG 57.631 37.500 0.00 0.00 35.14 2.90
296 297 5.210715 CGCCAGAGAAATTAAATCATCTGC 58.789 41.667 0.00 0.00 34.26 4.26
297 298 5.210715 GCCAGAGAAATTAAATCATCTGCG 58.789 41.667 0.00 0.00 34.26 5.18
298 299 5.210715 CCAGAGAAATTAAATCATCTGCGC 58.789 41.667 0.00 0.00 34.26 6.09
299 300 5.008415 CCAGAGAAATTAAATCATCTGCGCT 59.992 40.000 9.73 0.00 34.26 5.92
300 301 5.907945 CAGAGAAATTAAATCATCTGCGCTG 59.092 40.000 9.73 8.88 0.00 5.18
301 302 4.604976 AGAAATTAAATCATCTGCGCTGC 58.395 39.130 9.73 0.00 0.00 5.25
302 303 3.360249 AATTAAATCATCTGCGCTGCC 57.640 42.857 9.73 0.00 0.00 4.85
303 304 1.748950 TTAAATCATCTGCGCTGCCA 58.251 45.000 9.73 0.00 0.00 4.92
304 305 1.971481 TAAATCATCTGCGCTGCCAT 58.029 45.000 9.73 0.00 0.00 4.40
305 306 1.971481 AAATCATCTGCGCTGCCATA 58.029 45.000 9.73 0.00 0.00 2.74
306 307 2.195741 AATCATCTGCGCTGCCATAT 57.804 45.000 9.73 0.00 0.00 1.78
307 308 1.450025 ATCATCTGCGCTGCCATATG 58.550 50.000 9.73 8.13 0.00 1.78
308 309 1.209383 CATCTGCGCTGCCATATGC 59.791 57.895 9.73 0.00 41.77 3.14
318 319 3.230115 GCCATATGCAGAGCTCTCC 57.770 57.895 14.96 5.16 40.77 3.71
319 320 0.395686 GCCATATGCAGAGCTCTCCA 59.604 55.000 14.96 12.63 40.77 3.86
320 321 1.608542 GCCATATGCAGAGCTCTCCAG 60.609 57.143 14.96 3.95 40.77 3.86
321 322 1.969208 CCATATGCAGAGCTCTCCAGA 59.031 52.381 14.96 9.32 0.00 3.86
322 323 2.028839 CCATATGCAGAGCTCTCCAGAG 60.029 54.545 14.96 5.03 44.75 3.35
323 324 1.702182 TATGCAGAGCTCTCCAGAGG 58.298 55.000 14.96 2.27 42.29 3.69
330 331 2.549332 GCTCTCCAGAGGTGTTTGC 58.451 57.895 5.74 0.00 42.29 3.68
331 332 0.036022 GCTCTCCAGAGGTGTTTGCT 59.964 55.000 5.74 0.00 42.29 3.91
332 333 1.805869 CTCTCCAGAGGTGTTTGCTG 58.194 55.000 0.00 0.00 38.48 4.41
333 334 1.345741 CTCTCCAGAGGTGTTTGCTGA 59.654 52.381 0.00 0.00 38.48 4.26
334 335 1.345741 TCTCCAGAGGTGTTTGCTGAG 59.654 52.381 0.00 0.00 0.00 3.35
335 336 0.397941 TCCAGAGGTGTTTGCTGAGG 59.602 55.000 0.00 0.00 0.00 3.86
336 337 1.239968 CCAGAGGTGTTTGCTGAGGC 61.240 60.000 0.00 0.00 39.26 4.70
345 346 2.111669 TGCTGAGGCAGTGGTGTG 59.888 61.111 0.00 0.00 44.28 3.82
346 347 2.670934 GCTGAGGCAGTGGTGTGG 60.671 66.667 0.00 0.00 38.54 4.17
347 348 3.150949 CTGAGGCAGTGGTGTGGA 58.849 61.111 0.00 0.00 0.00 4.02
348 349 1.681666 CTGAGGCAGTGGTGTGGAT 59.318 57.895 0.00 0.00 0.00 3.41
349 350 0.675837 CTGAGGCAGTGGTGTGGATG 60.676 60.000 0.00 0.00 0.00 3.51
350 351 1.376466 GAGGCAGTGGTGTGGATGT 59.624 57.895 0.00 0.00 0.00 3.06
351 352 0.957395 GAGGCAGTGGTGTGGATGTG 60.957 60.000 0.00 0.00 0.00 3.21
352 353 1.073025 GGCAGTGGTGTGGATGTGA 59.927 57.895 0.00 0.00 0.00 3.58
353 354 0.957395 GGCAGTGGTGTGGATGTGAG 60.957 60.000 0.00 0.00 0.00 3.51
354 355 0.035317 GCAGTGGTGTGGATGTGAGA 59.965 55.000 0.00 0.00 0.00 3.27
355 356 1.543208 GCAGTGGTGTGGATGTGAGAA 60.543 52.381 0.00 0.00 0.00 2.87
356 357 2.877300 GCAGTGGTGTGGATGTGAGAAT 60.877 50.000 0.00 0.00 0.00 2.40
357 358 2.745821 CAGTGGTGTGGATGTGAGAATG 59.254 50.000 0.00 0.00 0.00 2.67
358 359 1.470098 GTGGTGTGGATGTGAGAATGC 59.530 52.381 0.00 0.00 0.00 3.56
359 360 1.352017 TGGTGTGGATGTGAGAATGCT 59.648 47.619 0.00 0.00 0.00 3.79
360 361 2.571202 TGGTGTGGATGTGAGAATGCTA 59.429 45.455 0.00 0.00 0.00 3.49
361 362 2.939103 GGTGTGGATGTGAGAATGCTAC 59.061 50.000 0.00 0.00 0.00 3.58
362 363 3.369892 GGTGTGGATGTGAGAATGCTACT 60.370 47.826 0.00 0.00 0.00 2.57
363 364 3.868077 GTGTGGATGTGAGAATGCTACTC 59.132 47.826 0.00 0.00 35.26 2.59
364 365 3.118629 TGTGGATGTGAGAATGCTACTCC 60.119 47.826 0.00 0.00 33.95 3.85
365 366 2.435805 TGGATGTGAGAATGCTACTCCC 59.564 50.000 0.00 0.00 33.95 4.30
366 367 2.546795 GGATGTGAGAATGCTACTCCCG 60.547 54.545 0.00 0.00 33.95 5.14
367 368 0.175760 TGTGAGAATGCTACTCCCGC 59.824 55.000 0.00 0.00 33.95 6.13
368 369 0.175760 GTGAGAATGCTACTCCCGCA 59.824 55.000 0.00 0.00 42.25 5.69
369 370 0.461548 TGAGAATGCTACTCCCGCAG 59.538 55.000 0.00 0.00 41.22 5.18
370 371 0.461961 GAGAATGCTACTCCCGCAGT 59.538 55.000 0.00 0.00 41.22 4.40
371 372 2.979130 GAATGCTACTCCCGCAGTC 58.021 57.895 0.00 0.00 43.73 3.51
372 373 2.286826 AATGCTACTCCCGCAGTCA 58.713 52.632 0.00 0.00 41.22 3.41
373 374 0.833287 AATGCTACTCCCGCAGTCAT 59.167 50.000 0.00 0.00 41.22 3.06
374 375 0.833287 ATGCTACTCCCGCAGTCATT 59.167 50.000 0.00 0.00 41.22 2.57
375 376 1.480789 TGCTACTCCCGCAGTCATTA 58.519 50.000 0.00 0.00 36.43 1.90
376 377 2.039418 TGCTACTCCCGCAGTCATTAT 58.961 47.619 0.00 0.00 36.43 1.28
377 378 2.224042 TGCTACTCCCGCAGTCATTATG 60.224 50.000 0.00 0.00 36.43 1.90
378 379 2.868044 GCTACTCCCGCAGTCATTATGG 60.868 54.545 0.00 0.00 36.43 2.74
379 380 0.469917 ACTCCCGCAGTCATTATGGG 59.530 55.000 0.00 0.00 41.43 4.00
380 381 0.758734 CTCCCGCAGTCATTATGGGA 59.241 55.000 0.00 0.00 46.47 4.37
381 382 0.468226 TCCCGCAGTCATTATGGGAC 59.532 55.000 0.00 0.00 43.85 4.46
382 383 0.880278 CCCGCAGTCATTATGGGACG 60.880 60.000 0.00 0.00 42.77 4.79
383 384 0.880278 CCGCAGTCATTATGGGACGG 60.880 60.000 0.00 0.00 40.20 4.79
384 385 0.104120 CGCAGTCATTATGGGACGGA 59.896 55.000 0.00 0.00 40.20 4.69
385 386 1.869754 CGCAGTCATTATGGGACGGAG 60.870 57.143 0.00 0.00 40.20 4.63
386 387 1.541233 GCAGTCATTATGGGACGGAGG 60.541 57.143 0.00 0.00 40.20 4.30
387 388 1.070758 CAGTCATTATGGGACGGAGGG 59.929 57.143 0.00 0.00 40.20 4.30
388 389 1.062428 AGTCATTATGGGACGGAGGGA 60.062 52.381 0.00 0.00 40.20 4.20
389 390 1.344763 GTCATTATGGGACGGAGGGAG 59.655 57.143 0.00 0.00 0.00 4.30
390 391 1.062428 TCATTATGGGACGGAGGGAGT 60.062 52.381 0.00 0.00 0.00 3.85
391 392 2.178325 TCATTATGGGACGGAGGGAGTA 59.822 50.000 0.00 0.00 0.00 2.59
392 393 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
393 394 0.178970 TATGGGACGGAGGGAGTAGC 60.179 60.000 0.00 0.00 0.00 3.58
394 395 2.043248 GGGACGGAGGGAGTAGCA 60.043 66.667 0.00 0.00 0.00 3.49
395 396 1.457831 GGGACGGAGGGAGTAGCAT 60.458 63.158 0.00 0.00 0.00 3.79
396 397 1.742768 GGACGGAGGGAGTAGCATG 59.257 63.158 0.00 0.00 0.00 4.06
397 398 1.742768 GACGGAGGGAGTAGCATGG 59.257 63.158 0.00 0.00 0.00 3.66
398 399 0.755698 GACGGAGGGAGTAGCATGGA 60.756 60.000 0.00 0.00 0.00 3.41
399 400 0.757188 ACGGAGGGAGTAGCATGGAG 60.757 60.000 0.00 0.00 0.00 3.86
400 401 1.751563 GGAGGGAGTAGCATGGAGC 59.248 63.158 0.00 0.00 46.19 4.70
410 411 1.573436 GCATGGAGCTATCTTGCGC 59.427 57.895 0.00 0.00 41.15 6.09
411 412 0.883814 GCATGGAGCTATCTTGCGCT 60.884 55.000 9.73 0.00 41.15 5.92
412 413 1.590932 CATGGAGCTATCTTGCGCTT 58.409 50.000 9.73 0.00 36.45 4.68
413 414 1.530293 CATGGAGCTATCTTGCGCTTC 59.470 52.381 9.73 0.00 36.45 3.86
414 415 0.179073 TGGAGCTATCTTGCGCTTCC 60.179 55.000 9.73 3.63 36.45 3.46
415 416 0.882484 GGAGCTATCTTGCGCTTCCC 60.882 60.000 9.73 0.00 36.45 3.97
416 417 0.882484 GAGCTATCTTGCGCTTCCCC 60.882 60.000 9.73 0.00 36.45 4.81
417 418 1.147153 GCTATCTTGCGCTTCCCCT 59.853 57.895 9.73 0.00 0.00 4.79
451 452 5.129901 GCAAATATGCGTCCACATTTTTC 57.870 39.130 0.00 0.00 43.83 2.29
452 453 4.624882 GCAAATATGCGTCCACATTTTTCA 59.375 37.500 0.00 0.00 43.83 2.69
453 454 5.291614 GCAAATATGCGTCCACATTTTTCAT 59.708 36.000 0.00 0.00 43.83 2.57
454 455 6.475076 GCAAATATGCGTCCACATTTTTCATA 59.525 34.615 0.00 0.00 43.83 2.15
455 456 7.306167 GCAAATATGCGTCCACATTTTTCATAG 60.306 37.037 0.00 0.00 43.83 2.23
456 457 6.942532 ATATGCGTCCACATTTTTCATAGT 57.057 33.333 0.00 0.00 0.00 2.12
457 458 8.445275 AATATGCGTCCACATTTTTCATAGTA 57.555 30.769 0.00 0.00 0.00 1.82
458 459 6.942532 ATGCGTCCACATTTTTCATAGTAT 57.057 33.333 0.00 0.00 0.00 2.12
460 461 6.781138 TGCGTCCACATTTTTCATAGTATTC 58.219 36.000 0.00 0.00 0.00 1.75
461 462 5.901884 GCGTCCACATTTTTCATAGTATTCG 59.098 40.000 0.00 0.00 0.00 3.34
491 493 9.696572 ATTAAGAATATATCTCTACCACGCCTA 57.303 33.333 0.00 0.00 37.42 3.93
524 527 6.887545 ACTCAGCTAGTATAAACAGACAGACT 59.112 38.462 0.00 0.00 36.36 3.24
539 542 7.110155 ACAGACAGACTACTCCTTTTCAAAAA 58.890 34.615 0.00 0.00 0.00 1.94
540 543 7.065923 ACAGACAGACTACTCCTTTTCAAAAAC 59.934 37.037 0.00 0.00 0.00 2.43
541 544 7.065803 CAGACAGACTACTCCTTTTCAAAAACA 59.934 37.037 0.00 0.00 0.00 2.83
542 545 7.610305 AGACAGACTACTCCTTTTCAAAAACAA 59.390 33.333 0.00 0.00 0.00 2.83
543 546 8.117813 ACAGACTACTCCTTTTCAAAAACAAA 57.882 30.769 0.00 0.00 0.00 2.83
544 547 8.027189 ACAGACTACTCCTTTTCAAAAACAAAC 58.973 33.333 0.00 0.00 0.00 2.93
545 548 8.026607 CAGACTACTCCTTTTCAAAAACAAACA 58.973 33.333 0.00 0.00 0.00 2.83
546 549 8.581578 AGACTACTCCTTTTCAAAAACAAACAA 58.418 29.630 0.00 0.00 0.00 2.83
547 550 9.198837 GACTACTCCTTTTCAAAAACAAACAAA 57.801 29.630 0.00 0.00 0.00 2.83
548 551 8.984764 ACTACTCCTTTTCAAAAACAAACAAAC 58.015 29.630 0.00 0.00 0.00 2.93
674 677 3.636231 CCCGCCAGTCACCAGGAA 61.636 66.667 0.00 0.00 0.00 3.36
677 680 1.672356 CGCCAGTCACCAGGAAAGG 60.672 63.158 0.00 0.00 0.00 3.11
821 832 2.192187 TCGCACCACTTTGCATGCA 61.192 52.632 18.46 18.46 43.15 3.96
823 834 2.017783 GCACCACTTTGCATGCACG 61.018 57.895 22.58 16.96 42.49 5.34
1020 1051 2.972505 ACCACGGACGCAAGCAAG 60.973 61.111 0.00 0.00 45.62 4.01
1073 1108 2.430694 GAGGAGGAAGAAGAAGAGCTCC 59.569 54.545 10.93 0.00 0.00 4.70
1089 1124 1.474648 CTCCATCGATCACGTGCGTG 61.475 60.000 17.44 17.44 46.64 5.34
1551 1593 4.887987 GCGCGCTCTGGCTCTGAT 62.888 66.667 26.67 0.00 36.09 2.90
1586 1631 5.276270 CAAAATCAAAGATGCATACGGGAG 58.724 41.667 0.00 0.00 0.00 4.30
1588 1633 1.837439 TCAAAGATGCATACGGGAGGT 59.163 47.619 0.00 0.00 0.00 3.85
1610 1655 0.721154 TACTACGGACGTACGCACAG 59.279 55.000 22.56 17.24 37.37 3.66
1788 1839 9.948964 AAATTCTTTTGATTAGGGGATGAAAAG 57.051 29.630 0.00 0.00 39.81 2.27
1796 1848 7.882755 TGATTAGGGGATGAAAAGTTAGGAAT 58.117 34.615 0.00 0.00 0.00 3.01
1800 1852 9.862149 TTAGGGGATGAAAAGTTAGGAATTATC 57.138 33.333 0.00 0.00 0.00 1.75
1804 1856 7.282450 GGGATGAAAAGTTAGGAATTATCGTGT 59.718 37.037 0.00 0.00 0.00 4.49
1820 1872 3.845178 TCGTGTCATCTCGTGCTTATTT 58.155 40.909 0.00 0.00 33.21 1.40
1821 1873 4.242475 TCGTGTCATCTCGTGCTTATTTT 58.758 39.130 0.00 0.00 33.21 1.82
1862 1917 4.614475 AGTACATGGATGAGTGAAGAGGA 58.386 43.478 0.00 0.00 0.00 3.71
1903 1958 8.274322 ACTGTATAAATCATGGTCCTTTCATCA 58.726 33.333 0.00 0.00 0.00 3.07
1938 1993 7.818930 GGTTTTCTAGATGCCAATTCATTTTGA 59.181 33.333 0.00 0.00 0.00 2.69
2034 2091 0.809636 GGTGGTTGTTTGTTGCAGCC 60.810 55.000 0.00 0.00 37.67 4.85
2044 2101 1.154035 GTTGCAGCCGATTTTCCCG 60.154 57.895 0.00 0.00 0.00 5.14
2051 2109 2.098293 CCGATTTTCCCGGCTCTTG 58.902 57.895 0.00 0.00 40.54 3.02
2313 2388 8.442660 AAGGTTTATTAATTCATTTCCACCCA 57.557 30.769 0.00 0.00 0.00 4.51
2338 2413 2.980699 AAAATCCCCTCTCCTCTCCT 57.019 50.000 0.00 0.00 0.00 3.69
2339 2414 2.487746 AAATCCCCTCTCCTCTCCTC 57.512 55.000 0.00 0.00 0.00 3.71
2356 2431 0.449388 CTCGGAGTGCTCAAATTGCC 59.551 55.000 0.00 0.00 0.00 4.52
2400 2478 1.471287 GCCGTTTCCATTGTAGGGTTC 59.529 52.381 0.00 0.00 0.00 3.62
2409 2487 5.893500 TCCATTGTAGGGTTCATTTGGTTA 58.106 37.500 0.00 0.00 0.00 2.85
2476 2554 0.250038 CCCTCTATCCCACATGTGCG 60.250 60.000 20.81 12.52 0.00 5.34
2498 2576 1.150536 TGCCAGCCGTTTCTCCTTT 59.849 52.632 0.00 0.00 0.00 3.11
2535 2613 1.867812 CGATGCGACGACACACGAT 60.868 57.895 0.00 0.00 45.77 3.73
2538 2616 0.388006 ATGCGACGACACACGATCAA 60.388 50.000 0.00 0.00 45.77 2.57
2602 2692 4.869861 TGAATGTTAGGTCGATGATGTGTG 59.130 41.667 0.00 0.00 0.00 3.82
2632 2722 4.037803 CACATCAAATCCACAACCAAGACA 59.962 41.667 0.00 0.00 0.00 3.41
2655 2745 5.966742 ATAAGAGCTCCCTTTTTGTCAAC 57.033 39.130 10.93 0.00 0.00 3.18
2661 2751 3.059120 GCTCCCTTTTTGTCAACGTAGAC 60.059 47.826 0.00 0.00 38.99 2.59
2671 2761 2.097791 GTCAACGTAGACAGCTCCCTAG 59.902 54.545 0.00 0.00 38.40 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.199508 AGCTGGCTGATATGAGTTCAGTT 59.800 43.478 12.98 7.13 42.12 3.16
1 2 2.770802 AGCTGGCTGATATGAGTTCAGT 59.229 45.455 12.98 2.55 42.12 3.41
2 3 3.472283 AGCTGGCTGATATGAGTTCAG 57.528 47.619 9.17 9.17 42.83 3.02
4 5 3.801698 TGAAGCTGGCTGATATGAGTTC 58.198 45.455 0.00 0.00 0.00 3.01
5 6 3.920231 TGAAGCTGGCTGATATGAGTT 57.080 42.857 0.00 0.00 0.00 3.01
6 7 3.647113 AGATGAAGCTGGCTGATATGAGT 59.353 43.478 0.00 0.00 0.00 3.41
9 10 3.058155 GCAAGATGAAGCTGGCTGATATG 60.058 47.826 0.00 0.00 31.94 1.78
10 11 3.147629 GCAAGATGAAGCTGGCTGATAT 58.852 45.455 0.00 0.00 31.94 1.63
11 12 2.569059 GCAAGATGAAGCTGGCTGATA 58.431 47.619 0.00 0.00 31.94 2.15
12 13 1.390565 GCAAGATGAAGCTGGCTGAT 58.609 50.000 0.00 0.00 31.94 2.90
13 14 0.679002 GGCAAGATGAAGCTGGCTGA 60.679 55.000 0.00 0.00 35.13 4.26
14 15 0.963856 TGGCAAGATGAAGCTGGCTG 60.964 55.000 0.00 0.00 35.13 4.85
15 16 0.033405 ATGGCAAGATGAAGCTGGCT 60.033 50.000 0.00 0.00 35.13 4.75
16 17 0.822164 AATGGCAAGATGAAGCTGGC 59.178 50.000 0.00 0.00 33.95 4.85
17 18 3.604875 AAAATGGCAAGATGAAGCTGG 57.395 42.857 0.00 0.00 0.00 4.85
18 19 4.562082 TGAAAAATGGCAAGATGAAGCTG 58.438 39.130 0.00 0.00 0.00 4.24
19 20 4.877378 TGAAAAATGGCAAGATGAAGCT 57.123 36.364 0.00 0.00 0.00 3.74
20 21 4.266976 CGATGAAAAATGGCAAGATGAAGC 59.733 41.667 0.00 0.00 0.00 3.86
21 22 5.514204 GTCGATGAAAAATGGCAAGATGAAG 59.486 40.000 0.00 0.00 0.00 3.02
22 23 5.183713 AGTCGATGAAAAATGGCAAGATGAA 59.816 36.000 0.00 0.00 0.00 2.57
23 24 4.701651 AGTCGATGAAAAATGGCAAGATGA 59.298 37.500 0.00 0.00 0.00 2.92
24 25 4.990257 AGTCGATGAAAAATGGCAAGATG 58.010 39.130 0.00 0.00 0.00 2.90
25 26 6.543465 TGATAGTCGATGAAAAATGGCAAGAT 59.457 34.615 0.00 0.00 0.00 2.40
26 27 5.879777 TGATAGTCGATGAAAAATGGCAAGA 59.120 36.000 0.00 0.00 0.00 3.02
27 28 6.122850 TGATAGTCGATGAAAAATGGCAAG 57.877 37.500 0.00 0.00 0.00 4.01
28 29 6.507958 TTGATAGTCGATGAAAAATGGCAA 57.492 33.333 0.00 0.00 0.00 4.52
29 30 6.698008 ATTGATAGTCGATGAAAAATGGCA 57.302 33.333 0.00 0.00 0.00 4.92
30 31 7.701924 TGAAATTGATAGTCGATGAAAAATGGC 59.298 33.333 0.00 0.00 0.00 4.40
31 32 9.571810 TTGAAATTGATAGTCGATGAAAAATGG 57.428 29.630 0.00 0.00 0.00 3.16
33 34 9.277565 CGTTGAAATTGATAGTCGATGAAAAAT 57.722 29.630 0.00 0.00 0.00 1.82
34 35 8.286800 ACGTTGAAATTGATAGTCGATGAAAAA 58.713 29.630 0.00 0.00 0.00 1.94
35 36 7.744276 CACGTTGAAATTGATAGTCGATGAAAA 59.256 33.333 0.00 0.00 0.00 2.29
36 37 7.117092 TCACGTTGAAATTGATAGTCGATGAAA 59.883 33.333 0.00 0.00 0.00 2.69
37 38 6.588373 TCACGTTGAAATTGATAGTCGATGAA 59.412 34.615 0.00 0.00 0.00 2.57
38 39 6.096695 TCACGTTGAAATTGATAGTCGATGA 58.903 36.000 0.00 0.00 0.00 2.92
39 40 6.331170 TCACGTTGAAATTGATAGTCGATG 57.669 37.500 0.00 0.00 0.00 3.84
40 41 6.811665 TCTTCACGTTGAAATTGATAGTCGAT 59.188 34.615 0.00 0.00 35.73 3.59
41 42 6.153756 TCTTCACGTTGAAATTGATAGTCGA 58.846 36.000 0.00 0.00 35.73 4.20
42 43 6.389622 TCTTCACGTTGAAATTGATAGTCG 57.610 37.500 0.00 0.00 35.73 4.18
43 44 9.612620 AAAATCTTCACGTTGAAATTGATAGTC 57.387 29.630 0.00 0.00 35.73 2.59
44 45 9.398170 CAAAATCTTCACGTTGAAATTGATAGT 57.602 29.630 0.00 0.00 35.73 2.12
45 46 9.398170 ACAAAATCTTCACGTTGAAATTGATAG 57.602 29.630 13.12 0.00 35.73 2.08
47 48 9.398170 CTACAAAATCTTCACGTTGAAATTGAT 57.602 29.630 13.12 6.62 35.73 2.57
48 49 7.378461 GCTACAAAATCTTCACGTTGAAATTGA 59.622 33.333 13.12 5.20 35.73 2.57
49 50 7.379529 AGCTACAAAATCTTCACGTTGAAATTG 59.620 33.333 0.00 0.00 35.73 2.32
50 51 7.425606 AGCTACAAAATCTTCACGTTGAAATT 58.574 30.769 0.00 0.00 35.73 1.82
51 52 6.970484 AGCTACAAAATCTTCACGTTGAAAT 58.030 32.000 0.00 0.00 35.73 2.17
52 53 6.037720 TGAGCTACAAAATCTTCACGTTGAAA 59.962 34.615 0.00 0.00 35.73 2.69
53 54 5.525745 TGAGCTACAAAATCTTCACGTTGAA 59.474 36.000 0.00 0.00 34.79 2.69
54 55 5.053811 TGAGCTACAAAATCTTCACGTTGA 58.946 37.500 0.00 0.00 0.00 3.18
55 56 5.342806 TGAGCTACAAAATCTTCACGTTG 57.657 39.130 0.00 0.00 0.00 4.10
56 57 5.122396 GGATGAGCTACAAAATCTTCACGTT 59.878 40.000 0.00 0.00 0.00 3.99
57 58 4.631813 GGATGAGCTACAAAATCTTCACGT 59.368 41.667 0.00 0.00 0.00 4.49
58 59 4.631377 TGGATGAGCTACAAAATCTTCACG 59.369 41.667 0.00 0.00 0.00 4.35
59 60 5.446473 CGTGGATGAGCTACAAAATCTTCAC 60.446 44.000 0.00 0.00 0.00 3.18
60 61 4.631377 CGTGGATGAGCTACAAAATCTTCA 59.369 41.667 0.00 0.00 0.00 3.02
61 62 4.870426 TCGTGGATGAGCTACAAAATCTTC 59.130 41.667 0.00 0.00 0.00 2.87
62 63 4.832248 TCGTGGATGAGCTACAAAATCTT 58.168 39.130 0.00 0.00 0.00 2.40
63 64 4.471904 TCGTGGATGAGCTACAAAATCT 57.528 40.909 0.00 0.00 0.00 2.40
64 65 4.034510 CCTTCGTGGATGAGCTACAAAATC 59.965 45.833 0.00 0.00 38.35 2.17
65 66 3.941483 CCTTCGTGGATGAGCTACAAAAT 59.059 43.478 0.00 0.00 38.35 1.82
66 67 3.007506 TCCTTCGTGGATGAGCTACAAAA 59.992 43.478 0.00 0.00 40.56 2.44
67 68 2.565391 TCCTTCGTGGATGAGCTACAAA 59.435 45.455 0.00 0.00 40.56 2.83
68 69 2.176045 TCCTTCGTGGATGAGCTACAA 58.824 47.619 0.00 0.00 40.56 2.41
69 70 1.847328 TCCTTCGTGGATGAGCTACA 58.153 50.000 0.00 0.00 40.56 2.74
78 79 3.086481 AGGAAGTGACATCCTTCGTGGA 61.086 50.000 3.07 2.74 45.06 4.02
79 80 1.276421 AGGAAGTGACATCCTTCGTGG 59.724 52.381 3.07 0.00 45.06 4.94
80 81 2.751166 AGGAAGTGACATCCTTCGTG 57.249 50.000 3.07 0.00 45.06 4.35
86 87 4.504858 ACGTAATTGAGGAAGTGACATCC 58.495 43.478 0.00 0.00 37.22 3.51
87 88 4.265556 CGACGTAATTGAGGAAGTGACATC 59.734 45.833 0.00 0.00 0.00 3.06
88 89 4.174009 CGACGTAATTGAGGAAGTGACAT 58.826 43.478 0.00 0.00 0.00 3.06
89 90 3.005050 ACGACGTAATTGAGGAAGTGACA 59.995 43.478 0.00 0.00 0.00 3.58
90 91 3.572584 ACGACGTAATTGAGGAAGTGAC 58.427 45.455 0.00 0.00 0.00 3.67
91 92 3.668757 CGACGACGTAATTGAGGAAGTGA 60.669 47.826 0.00 0.00 34.56 3.41
92 93 2.592897 CGACGACGTAATTGAGGAAGTG 59.407 50.000 0.00 0.00 34.56 3.16
93 94 2.415090 CCGACGACGTAATTGAGGAAGT 60.415 50.000 0.00 0.00 37.88 3.01
94 95 2.159476 TCCGACGACGTAATTGAGGAAG 60.159 50.000 0.00 0.00 37.88 3.46
95 96 1.811965 TCCGACGACGTAATTGAGGAA 59.188 47.619 0.00 0.00 37.88 3.36
96 97 1.452110 TCCGACGACGTAATTGAGGA 58.548 50.000 0.00 0.66 37.88 3.71
97 98 2.267188 TTCCGACGACGTAATTGAGG 57.733 50.000 0.00 0.00 37.88 3.86
98 99 4.634349 TTTTTCCGACGACGTAATTGAG 57.366 40.909 0.00 0.00 37.88 3.02
116 117 2.102578 CCATCGAGGGAATGCCTTTTT 58.897 47.619 11.55 0.00 0.00 1.94
117 118 1.767759 CCATCGAGGGAATGCCTTTT 58.232 50.000 11.55 0.00 0.00 2.27
118 119 3.502164 CCATCGAGGGAATGCCTTT 57.498 52.632 11.55 0.00 0.00 3.11
128 129 2.202797 CGTGCACTCCCATCGAGG 60.203 66.667 16.19 0.00 43.57 4.63
129 130 2.202797 CCGTGCACTCCCATCGAG 60.203 66.667 16.19 0.00 44.95 4.04
130 131 3.770040 CCCGTGCACTCCCATCGA 61.770 66.667 16.19 0.00 0.00 3.59
131 132 4.082523 ACCCGTGCACTCCCATCG 62.083 66.667 16.19 0.00 0.00 3.84
132 133 2.125106 GACCCGTGCACTCCCATC 60.125 66.667 16.19 1.61 0.00 3.51
133 134 2.185310 GAAGACCCGTGCACTCCCAT 62.185 60.000 16.19 0.00 0.00 4.00
134 135 2.847234 AAGACCCGTGCACTCCCA 60.847 61.111 16.19 0.00 0.00 4.37
135 136 2.047179 GAAGACCCGTGCACTCCC 60.047 66.667 16.19 1.31 0.00 4.30
136 137 1.374758 CTGAAGACCCGTGCACTCC 60.375 63.158 16.19 0.95 0.00 3.85
137 138 0.667792 GACTGAAGACCCGTGCACTC 60.668 60.000 16.19 5.83 0.00 3.51
138 139 1.367840 GACTGAAGACCCGTGCACT 59.632 57.895 16.19 0.00 0.00 4.40
139 140 2.022129 CGACTGAAGACCCGTGCAC 61.022 63.158 6.82 6.82 0.00 4.57
140 141 1.740332 TTCGACTGAAGACCCGTGCA 61.740 55.000 0.00 0.00 0.00 4.57
141 142 0.599204 TTTCGACTGAAGACCCGTGC 60.599 55.000 0.00 0.00 35.06 5.34
142 143 1.137513 GTTTCGACTGAAGACCCGTG 58.862 55.000 0.00 0.00 35.06 4.94
143 144 0.748450 TGTTTCGACTGAAGACCCGT 59.252 50.000 0.00 0.00 35.06 5.28
144 145 1.993370 GATGTTTCGACTGAAGACCCG 59.007 52.381 0.00 0.00 35.06 5.28
145 146 2.289444 TGGATGTTTCGACTGAAGACCC 60.289 50.000 0.00 0.00 35.06 4.46
146 147 3.040147 TGGATGTTTCGACTGAAGACC 57.960 47.619 0.00 0.00 35.06 3.85
147 148 4.245660 TCATGGATGTTTCGACTGAAGAC 58.754 43.478 0.00 0.00 35.06 3.01
148 149 4.220602 TCTCATGGATGTTTCGACTGAAGA 59.779 41.667 0.00 0.00 35.06 2.87
149 150 4.498241 TCTCATGGATGTTTCGACTGAAG 58.502 43.478 0.00 0.00 35.06 3.02
150 151 4.535526 TCTCATGGATGTTTCGACTGAA 57.464 40.909 0.00 0.00 0.00 3.02
151 152 4.686972 GATCTCATGGATGTTTCGACTGA 58.313 43.478 0.00 0.00 34.33 3.41
152 153 3.488678 CGATCTCATGGATGTTTCGACTG 59.511 47.826 0.00 0.00 34.33 3.51
153 154 3.381590 TCGATCTCATGGATGTTTCGACT 59.618 43.478 0.00 0.00 34.33 4.18
154 155 3.706698 TCGATCTCATGGATGTTTCGAC 58.293 45.455 0.00 0.00 34.33 4.20
155 156 3.243535 CCTCGATCTCATGGATGTTTCGA 60.244 47.826 0.00 0.86 34.33 3.71
156 157 3.055591 CCTCGATCTCATGGATGTTTCG 58.944 50.000 0.00 0.00 34.33 3.46
157 158 4.327982 TCCTCGATCTCATGGATGTTTC 57.672 45.455 0.00 0.00 34.33 2.78
158 159 4.970860 ATCCTCGATCTCATGGATGTTT 57.029 40.909 1.11 0.00 37.85 2.83
159 160 5.328565 TCTATCCTCGATCTCATGGATGTT 58.671 41.667 10.93 0.00 39.39 2.71
160 161 4.928263 TCTATCCTCGATCTCATGGATGT 58.072 43.478 10.93 0.00 39.39 3.06
161 162 5.360429 ACATCTATCCTCGATCTCATGGATG 59.640 44.000 10.93 12.31 39.39 3.51
162 163 5.517924 ACATCTATCCTCGATCTCATGGAT 58.482 41.667 6.82 6.82 41.59 3.41
163 164 4.928263 ACATCTATCCTCGATCTCATGGA 58.072 43.478 0.00 0.00 0.00 3.41
164 165 5.299028 CCTACATCTATCCTCGATCTCATGG 59.701 48.000 0.00 0.00 0.00 3.66
165 166 6.118852 TCCTACATCTATCCTCGATCTCATG 58.881 44.000 0.00 0.00 0.00 3.07
166 167 6.320434 TCCTACATCTATCCTCGATCTCAT 57.680 41.667 0.00 0.00 0.00 2.90
167 168 5.763876 TCCTACATCTATCCTCGATCTCA 57.236 43.478 0.00 0.00 0.00 3.27
168 169 6.353323 TCATCCTACATCTATCCTCGATCTC 58.647 44.000 0.00 0.00 0.00 2.75
169 170 6.320434 TCATCCTACATCTATCCTCGATCT 57.680 41.667 0.00 0.00 0.00 2.75
170 171 7.397892 TTTCATCCTACATCTATCCTCGATC 57.602 40.000 0.00 0.00 0.00 3.69
171 172 7.969690 ATTTCATCCTACATCTATCCTCGAT 57.030 36.000 0.00 0.00 0.00 3.59
172 173 8.879427 TTATTTCATCCTACATCTATCCTCGA 57.121 34.615 0.00 0.00 0.00 4.04
209 210 6.055588 TGTTCCTCTTCAAAACCTACTGAAG 58.944 40.000 5.63 5.63 46.56 3.02
210 211 5.996644 TGTTCCTCTTCAAAACCTACTGAA 58.003 37.500 0.00 0.00 0.00 3.02
211 212 5.623956 TGTTCCTCTTCAAAACCTACTGA 57.376 39.130 0.00 0.00 0.00 3.41
212 213 6.347725 CGAATGTTCCTCTTCAAAACCTACTG 60.348 42.308 0.00 0.00 0.00 2.74
213 214 5.701290 CGAATGTTCCTCTTCAAAACCTACT 59.299 40.000 0.00 0.00 0.00 2.57
214 215 5.106673 CCGAATGTTCCTCTTCAAAACCTAC 60.107 44.000 0.00 0.00 0.00 3.18
215 216 5.001232 CCGAATGTTCCTCTTCAAAACCTA 58.999 41.667 0.00 0.00 0.00 3.08
216 217 3.821033 CCGAATGTTCCTCTTCAAAACCT 59.179 43.478 0.00 0.00 0.00 3.50
217 218 3.611766 GCCGAATGTTCCTCTTCAAAACC 60.612 47.826 0.00 0.00 0.00 3.27
218 219 3.004315 TGCCGAATGTTCCTCTTCAAAAC 59.996 43.478 0.00 0.00 0.00 2.43
219 220 3.218453 TGCCGAATGTTCCTCTTCAAAA 58.782 40.909 0.00 0.00 0.00 2.44
220 221 2.857483 TGCCGAATGTTCCTCTTCAAA 58.143 42.857 0.00 0.00 0.00 2.69
221 222 2.559698 TGCCGAATGTTCCTCTTCAA 57.440 45.000 0.00 0.00 0.00 2.69
222 223 2.559698 TTGCCGAATGTTCCTCTTCA 57.440 45.000 0.00 0.00 0.00 3.02
223 224 2.414691 GCTTTGCCGAATGTTCCTCTTC 60.415 50.000 0.00 0.00 0.00 2.87
224 225 1.541588 GCTTTGCCGAATGTTCCTCTT 59.458 47.619 0.00 0.00 0.00 2.85
225 226 1.168714 GCTTTGCCGAATGTTCCTCT 58.831 50.000 0.00 0.00 0.00 3.69
226 227 1.131315 GAGCTTTGCCGAATGTTCCTC 59.869 52.381 0.00 0.00 0.00 3.71
227 228 1.168714 GAGCTTTGCCGAATGTTCCT 58.831 50.000 0.00 0.00 0.00 3.36
228 229 1.131315 GAGAGCTTTGCCGAATGTTCC 59.869 52.381 0.00 0.00 0.00 3.62
229 230 2.079925 AGAGAGCTTTGCCGAATGTTC 58.920 47.619 0.00 0.00 0.00 3.18
230 231 2.191128 AGAGAGCTTTGCCGAATGTT 57.809 45.000 0.00 0.00 0.00 2.71
231 232 1.808945 CAAGAGAGCTTTGCCGAATGT 59.191 47.619 0.00 0.00 30.14 2.71
232 233 1.467035 GCAAGAGAGCTTTGCCGAATG 60.467 52.381 9.98 0.00 30.14 2.67
233 234 0.807496 GCAAGAGAGCTTTGCCGAAT 59.193 50.000 9.98 0.00 30.14 3.34
234 235 1.237285 GGCAAGAGAGCTTTGCCGAA 61.237 55.000 21.61 0.00 38.01 4.30
235 236 1.672356 GGCAAGAGAGCTTTGCCGA 60.672 57.895 21.61 0.00 38.01 5.54
236 237 2.873288 GGCAAGAGAGCTTTGCCG 59.127 61.111 21.61 0.00 38.01 5.69
237 238 1.672356 TCGGCAAGAGAGCTTTGCC 60.672 57.895 24.77 24.77 41.16 4.52
238 239 3.972227 TCGGCAAGAGAGCTTTGC 58.028 55.556 12.28 12.28 30.14 3.68
246 247 2.865343 ATAACGTACCTCGGCAAGAG 57.135 50.000 0.00 1.85 46.44 2.85
247 248 3.282021 AGTATAACGTACCTCGGCAAGA 58.718 45.455 0.00 0.00 44.69 3.02
248 249 3.705043 AGTATAACGTACCTCGGCAAG 57.295 47.619 0.00 0.00 44.69 4.01
249 250 3.696051 AGAAGTATAACGTACCTCGGCAA 59.304 43.478 0.00 0.00 44.69 4.52
250 251 3.282021 AGAAGTATAACGTACCTCGGCA 58.718 45.455 0.00 0.00 44.69 5.69
251 252 3.978718 AGAAGTATAACGTACCTCGGC 57.021 47.619 0.00 0.00 44.69 5.54
252 253 4.609336 GCGTAGAAGTATAACGTACCTCGG 60.609 50.000 0.00 0.00 44.69 4.63
253 254 4.449779 GCGTAGAAGTATAACGTACCTCG 58.550 47.826 0.00 0.00 46.00 4.63
254 255 4.273480 TGGCGTAGAAGTATAACGTACCTC 59.727 45.833 0.00 0.00 38.81 3.85
255 256 4.199310 TGGCGTAGAAGTATAACGTACCT 58.801 43.478 0.00 0.00 38.81 3.08
256 257 4.273480 TCTGGCGTAGAAGTATAACGTACC 59.727 45.833 0.00 0.00 38.81 3.34
257 258 5.235186 TCTCTGGCGTAGAAGTATAACGTAC 59.765 44.000 0.00 0.00 38.81 3.67
258 259 5.359756 TCTCTGGCGTAGAAGTATAACGTA 58.640 41.667 0.00 0.00 38.81 3.57
259 260 4.194640 TCTCTGGCGTAGAAGTATAACGT 58.805 43.478 0.00 0.00 38.81 3.99
260 261 4.808077 TCTCTGGCGTAGAAGTATAACG 57.192 45.455 0.00 0.00 39.55 3.18
261 262 9.525409 TTAATTTCTCTGGCGTAGAAGTATAAC 57.475 33.333 2.21 0.00 34.59 1.89
264 265 9.262358 GATTTAATTTCTCTGGCGTAGAAGTAT 57.738 33.333 2.21 0.00 34.59 2.12
265 266 8.255206 TGATTTAATTTCTCTGGCGTAGAAGTA 58.745 33.333 2.21 0.00 34.59 2.24
266 267 7.103641 TGATTTAATTTCTCTGGCGTAGAAGT 58.896 34.615 2.21 0.00 34.59 3.01
267 268 7.539712 TGATTTAATTTCTCTGGCGTAGAAG 57.460 36.000 2.21 0.00 34.59 2.85
268 269 7.987458 AGATGATTTAATTTCTCTGGCGTAGAA 59.013 33.333 0.00 0.00 34.32 2.10
269 270 7.439356 CAGATGATTTAATTTCTCTGGCGTAGA 59.561 37.037 0.00 0.00 0.00 2.59
270 271 7.571026 CAGATGATTTAATTTCTCTGGCGTAG 58.429 38.462 0.00 0.00 0.00 3.51
271 272 6.017934 GCAGATGATTTAATTTCTCTGGCGTA 60.018 38.462 11.49 0.00 32.65 4.42
272 273 5.220931 GCAGATGATTTAATTTCTCTGGCGT 60.221 40.000 11.49 0.00 32.65 5.68
273 274 5.210715 GCAGATGATTTAATTTCTCTGGCG 58.789 41.667 11.49 0.00 32.65 5.69
274 275 5.210715 CGCAGATGATTTAATTTCTCTGGC 58.789 41.667 11.49 0.00 32.65 4.85
275 276 5.008415 AGCGCAGATGATTTAATTTCTCTGG 59.992 40.000 11.47 5.95 32.65 3.86
276 277 6.057627 AGCGCAGATGATTTAATTTCTCTG 57.942 37.500 11.47 7.52 34.61 3.35
291 292 3.664495 GCATATGGCAGCGCAGAT 58.336 55.556 11.47 0.00 43.97 2.90
300 301 0.395686 TGGAGAGCTCTGCATATGGC 59.604 55.000 31.52 9.90 39.44 4.40
301 302 1.969208 TCTGGAGAGCTCTGCATATGG 59.031 52.381 34.33 23.54 43.35 2.74
302 303 2.028839 CCTCTGGAGAGCTCTGCATATG 60.029 54.545 34.33 23.87 43.35 1.78
303 304 2.250031 CCTCTGGAGAGCTCTGCATAT 58.750 52.381 34.33 4.27 43.35 1.78
304 305 1.063341 ACCTCTGGAGAGCTCTGCATA 60.063 52.381 34.33 26.73 43.35 3.14
305 306 0.325484 ACCTCTGGAGAGCTCTGCAT 60.325 55.000 34.33 19.44 43.35 3.96
306 307 1.078166 ACCTCTGGAGAGCTCTGCA 59.922 57.895 32.50 32.50 42.12 4.41
307 308 1.257055 ACACCTCTGGAGAGCTCTGC 61.257 60.000 26.87 26.87 40.75 4.26
308 309 1.265236 AACACCTCTGGAGAGCTCTG 58.735 55.000 23.91 7.14 40.75 3.35
309 310 1.622811 CAAACACCTCTGGAGAGCTCT 59.377 52.381 18.28 18.28 40.75 4.09
310 311 1.943507 GCAAACACCTCTGGAGAGCTC 60.944 57.143 5.27 5.27 40.75 4.09
311 312 0.036022 GCAAACACCTCTGGAGAGCT 59.964 55.000 0.00 0.00 40.75 4.09
312 313 0.036022 AGCAAACACCTCTGGAGAGC 59.964 55.000 0.00 0.00 40.75 4.09
313 314 1.345741 TCAGCAAACACCTCTGGAGAG 59.654 52.381 0.00 0.00 41.71 3.20
314 315 1.345741 CTCAGCAAACACCTCTGGAGA 59.654 52.381 0.00 0.00 0.00 3.71
315 316 1.610102 CCTCAGCAAACACCTCTGGAG 60.610 57.143 0.00 0.00 0.00 3.86
316 317 0.397941 CCTCAGCAAACACCTCTGGA 59.602 55.000 0.00 0.00 0.00 3.86
317 318 1.239968 GCCTCAGCAAACACCTCTGG 61.240 60.000 0.00 0.00 39.53 3.86
318 319 2.251600 GCCTCAGCAAACACCTCTG 58.748 57.895 0.00 0.00 39.53 3.35
319 320 4.809070 GCCTCAGCAAACACCTCT 57.191 55.556 0.00 0.00 39.53 3.69
329 330 2.475371 ATCCACACCACTGCCTCAGC 62.475 60.000 0.00 0.00 34.37 4.26
330 331 0.675837 CATCCACACCACTGCCTCAG 60.676 60.000 0.00 0.00 37.52 3.35
331 332 1.376086 CATCCACACCACTGCCTCA 59.624 57.895 0.00 0.00 0.00 3.86
332 333 0.957395 CACATCCACACCACTGCCTC 60.957 60.000 0.00 0.00 0.00 4.70
333 334 1.073722 CACATCCACACCACTGCCT 59.926 57.895 0.00 0.00 0.00 4.75
334 335 0.957395 CTCACATCCACACCACTGCC 60.957 60.000 0.00 0.00 0.00 4.85
335 336 0.035317 TCTCACATCCACACCACTGC 59.965 55.000 0.00 0.00 0.00 4.40
336 337 2.549064 TTCTCACATCCACACCACTG 57.451 50.000 0.00 0.00 0.00 3.66
337 338 2.877300 GCATTCTCACATCCACACCACT 60.877 50.000 0.00 0.00 0.00 4.00
338 339 1.470098 GCATTCTCACATCCACACCAC 59.530 52.381 0.00 0.00 0.00 4.16
339 340 1.352017 AGCATTCTCACATCCACACCA 59.648 47.619 0.00 0.00 0.00 4.17
340 341 2.119801 AGCATTCTCACATCCACACC 57.880 50.000 0.00 0.00 0.00 4.16
341 342 3.866651 AGTAGCATTCTCACATCCACAC 58.133 45.455 0.00 0.00 0.00 3.82
342 343 3.118629 GGAGTAGCATTCTCACATCCACA 60.119 47.826 5.47 0.00 34.04 4.17
343 344 3.462021 GGAGTAGCATTCTCACATCCAC 58.538 50.000 5.47 0.00 34.04 4.02
344 345 2.435805 GGGAGTAGCATTCTCACATCCA 59.564 50.000 5.47 0.00 35.63 3.41
345 346 2.546795 CGGGAGTAGCATTCTCACATCC 60.547 54.545 6.04 0.00 35.31 3.51
346 347 2.748605 CGGGAGTAGCATTCTCACATC 58.251 52.381 6.04 0.00 35.31 3.06
347 348 1.202580 GCGGGAGTAGCATTCTCACAT 60.203 52.381 6.04 0.00 35.31 3.21
348 349 0.175760 GCGGGAGTAGCATTCTCACA 59.824 55.000 6.04 0.00 35.31 3.58
349 350 0.175760 TGCGGGAGTAGCATTCTCAC 59.824 55.000 5.47 1.25 40.01 3.51
350 351 0.461548 CTGCGGGAGTAGCATTCTCA 59.538 55.000 5.47 0.00 44.26 3.27
351 352 3.280920 CTGCGGGAGTAGCATTCTC 57.719 57.895 0.00 0.00 44.26 2.87
358 359 6.588243 GTCCCATAATGACTGCGGGAGTAG 62.588 54.167 0.88 0.00 46.55 2.57
359 360 1.691976 CCCATAATGACTGCGGGAGTA 59.308 52.381 0.88 0.00 39.44 2.59
360 361 0.469917 CCCATAATGACTGCGGGAGT 59.530 55.000 0.31 0.31 39.44 3.85
361 362 0.758734 TCCCATAATGACTGCGGGAG 59.241 55.000 0.00 0.00 41.08 4.30
362 363 0.468226 GTCCCATAATGACTGCGGGA 59.532 55.000 0.00 0.00 43.77 5.14
363 364 0.880278 CGTCCCATAATGACTGCGGG 60.880 60.000 0.00 0.00 38.34 6.13
364 365 0.880278 CCGTCCCATAATGACTGCGG 60.880 60.000 0.00 0.00 0.00 5.69
365 366 0.104120 TCCGTCCCATAATGACTGCG 59.896 55.000 0.00 0.00 0.00 5.18
366 367 1.541233 CCTCCGTCCCATAATGACTGC 60.541 57.143 0.00 0.00 0.00 4.40
367 368 1.070758 CCCTCCGTCCCATAATGACTG 59.929 57.143 0.00 0.00 0.00 3.51
368 369 1.062428 TCCCTCCGTCCCATAATGACT 60.062 52.381 0.00 0.00 0.00 3.41
369 370 1.344763 CTCCCTCCGTCCCATAATGAC 59.655 57.143 0.00 0.00 0.00 3.06
370 371 1.062428 ACTCCCTCCGTCCCATAATGA 60.062 52.381 0.00 0.00 0.00 2.57
371 372 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
372 373 2.890814 CTACTCCCTCCGTCCCATAAT 58.109 52.381 0.00 0.00 0.00 1.28
373 374 1.756690 GCTACTCCCTCCGTCCCATAA 60.757 57.143 0.00 0.00 0.00 1.90
374 375 0.178970 GCTACTCCCTCCGTCCCATA 60.179 60.000 0.00 0.00 0.00 2.74
375 376 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
376 377 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
377 378 1.457831 ATGCTACTCCCTCCGTCCC 60.458 63.158 0.00 0.00 0.00 4.46
378 379 1.742768 CATGCTACTCCCTCCGTCC 59.257 63.158 0.00 0.00 0.00 4.79
379 380 0.755698 TCCATGCTACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
380 381 0.757188 CTCCATGCTACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
381 382 2.045280 CTCCATGCTACTCCCTCCG 58.955 63.158 0.00 0.00 0.00 4.63
382 383 1.751563 GCTCCATGCTACTCCCTCC 59.248 63.158 0.00 0.00 38.95 4.30
392 393 0.883814 AGCGCAAGATAGCTCCATGC 60.884 55.000 11.47 0.00 39.98 4.06
393 394 1.530293 GAAGCGCAAGATAGCTCCATG 59.470 52.381 11.47 0.00 43.78 3.66
394 395 1.542108 GGAAGCGCAAGATAGCTCCAT 60.542 52.381 11.47 0.00 43.78 3.41
395 396 0.179073 GGAAGCGCAAGATAGCTCCA 60.179 55.000 11.47 0.00 43.78 3.86
396 397 0.882484 GGGAAGCGCAAGATAGCTCC 60.882 60.000 11.47 1.77 43.78 4.70
397 398 0.882484 GGGGAAGCGCAAGATAGCTC 60.882 60.000 11.47 0.00 43.78 4.09
398 399 1.147153 GGGGAAGCGCAAGATAGCT 59.853 57.895 11.47 0.00 46.97 3.32
399 400 0.393077 TAGGGGAAGCGCAAGATAGC 59.607 55.000 11.47 0.00 43.02 2.97
400 401 2.910688 TTAGGGGAAGCGCAAGATAG 57.089 50.000 11.47 0.00 43.02 2.08
401 402 3.637911 TTTTAGGGGAAGCGCAAGATA 57.362 42.857 11.47 0.00 43.02 1.98
402 403 2.507407 TTTTAGGGGAAGCGCAAGAT 57.493 45.000 11.47 0.00 43.02 2.40
403 404 2.279935 TTTTTAGGGGAAGCGCAAGA 57.720 45.000 11.47 0.00 43.02 3.02
434 435 8.445275 AATACTATGAAAAATGTGGACGCATA 57.555 30.769 0.00 0.00 0.00 3.14
497 499 6.884836 TCTGTCTGTTTATACTAGCTGAGTGA 59.115 38.462 0.00 0.00 39.39 3.41
503 505 7.499895 GGAGTAGTCTGTCTGTTTATACTAGCT 59.500 40.741 0.00 0.00 0.00 3.32
507 509 8.653036 AAAGGAGTAGTCTGTCTGTTTATACT 57.347 34.615 0.00 0.00 0.00 2.12
524 527 8.888579 TGTTTGTTTGTTTTTGAAAAGGAGTA 57.111 26.923 0.00 0.00 0.00 2.59
898 909 2.509561 GGCGAGCGTTTCTCTCCC 60.510 66.667 0.00 0.00 40.11 4.30
934 965 2.124570 CTCATGGCGGGAAGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
998 1029 4.164087 TTGCGTCCGTGGTGGTGT 62.164 61.111 0.00 0.00 39.52 4.16
1277 1319 4.704833 CTCCCCACCACCAGCACG 62.705 72.222 0.00 0.00 0.00 5.34
1472 1514 4.899239 GCCATGAGCCGGTCGAGG 62.899 72.222 1.90 6.75 34.35 4.63
1551 1593 4.042062 TCTTTGATTTTGCTCAGAGGAGGA 59.958 41.667 0.00 0.00 41.67 3.71
1586 1631 0.373716 CGTACGTCCGTAGTACCACC 59.626 60.000 7.22 0.00 40.83 4.61
1588 1633 0.672091 TGCGTACGTCCGTAGTACCA 60.672 55.000 17.90 0.00 40.83 3.25
1610 1655 4.192317 AGATTAACTCCTGATCAAACGGC 58.808 43.478 0.00 0.00 0.00 5.68
1788 1839 6.142480 CACGAGATGACACGATAATTCCTAAC 59.858 42.308 0.00 0.00 34.51 2.34
1796 1848 3.503827 AAGCACGAGATGACACGATAA 57.496 42.857 0.00 0.00 34.51 1.75
1800 1852 4.584029 AAAATAAGCACGAGATGACACG 57.416 40.909 0.00 0.00 36.30 4.49
1820 1872 1.937278 TACAAGCGTGTGGTCGAAAA 58.063 45.000 15.96 0.00 38.82 2.29
1821 1873 1.862201 CTTACAAGCGTGTGGTCGAAA 59.138 47.619 15.96 0.00 38.82 3.46
1892 1947 2.032550 CCGATGTGCATGATGAAAGGAC 59.967 50.000 0.00 0.00 0.00 3.85
1903 1958 3.313526 GCATCTAGAAAACCGATGTGCAT 59.686 43.478 0.00 0.00 37.46 3.96
1938 1993 4.459337 CCCGCTAAGAGAAACCTTCAAAAT 59.541 41.667 0.00 0.00 0.00 1.82
1953 2009 5.237815 TGATAACATCATAAGCCCGCTAAG 58.762 41.667 0.00 0.00 33.59 2.18
2034 2091 1.130561 GAACAAGAGCCGGGAAAATCG 59.869 52.381 2.18 0.00 0.00 3.34
2044 2101 6.548251 AGAAGGAGTACTATAGAACAAGAGCC 59.452 42.308 6.78 0.00 0.00 4.70
2045 2102 7.576861 AGAAGGAGTACTATAGAACAAGAGC 57.423 40.000 6.78 0.00 0.00 4.09
2095 2153 2.331194 GTGAACCGTACGTGTAGCATT 58.669 47.619 15.21 0.00 0.00 3.56
2097 2155 0.039256 GGTGAACCGTACGTGTAGCA 60.039 55.000 15.21 10.45 0.00 3.49
2098 2156 0.039256 TGGTGAACCGTACGTGTAGC 60.039 55.000 15.21 7.76 39.43 3.58
2102 2160 3.941035 GGTGGTGAACCGTACGTG 58.059 61.111 15.21 8.32 39.81 4.49
2294 2369 7.487822 TTTGCTGGGTGGAAATGAATTAATA 57.512 32.000 0.00 0.00 31.00 0.98
2335 2410 1.945819 GCAATTTGAGCACTCCGAGGA 60.946 52.381 0.00 0.00 0.00 3.71
2336 2411 0.449388 GCAATTTGAGCACTCCGAGG 59.551 55.000 0.00 0.00 0.00 4.63
2337 2412 0.449388 GGCAATTTGAGCACTCCGAG 59.551 55.000 0.00 0.00 0.00 4.63
2338 2413 0.250684 TGGCAATTTGAGCACTCCGA 60.251 50.000 0.00 0.00 0.00 4.55
2339 2414 0.813184 ATGGCAATTTGAGCACTCCG 59.187 50.000 0.00 0.00 0.00 4.63
2356 2431 6.691818 GCTTCTAGCAGATGTGAAAAATCATG 59.308 38.462 0.00 0.00 41.89 3.07
2400 2478 8.721019 ACCATGAGCAAATAAATAACCAAATG 57.279 30.769 0.00 0.00 0.00 2.32
2409 2487 6.013466 ACAAAAGGGACCATGAGCAAATAAAT 60.013 34.615 0.00 0.00 0.00 1.40
2455 2533 1.212935 GCACATGTGGGATAGAGGGTT 59.787 52.381 26.55 0.00 0.00 4.11
2476 2554 1.648467 GGAGAAACGGCTGGCACATC 61.648 60.000 1.08 0.00 38.20 3.06
2498 2576 6.958752 CGCATCGTTGTTTCACAAATTATAGA 59.041 34.615 0.00 0.00 40.15 1.98
2523 2601 2.348218 GGTGTTTTGATCGTGTGTCGTC 60.348 50.000 0.00 0.00 40.80 4.20
2533 2611 3.254657 TGTTCATTCGGGGTGTTTTGATC 59.745 43.478 0.00 0.00 0.00 2.92
2535 2613 2.656002 TGTTCATTCGGGGTGTTTTGA 58.344 42.857 0.00 0.00 0.00 2.69
2538 2616 2.100087 GTGTTGTTCATTCGGGGTGTTT 59.900 45.455 0.00 0.00 0.00 2.83
2602 2692 2.310538 GTGGATTTGATGTGGGATCCC 58.689 52.381 25.22 25.22 37.78 3.85
2632 2722 5.048713 CGTTGACAAAAAGGGAGCTCTTATT 60.049 40.000 14.64 3.25 0.00 1.40
2655 2745 0.183014 TCCCTAGGGAGCTGTCTACG 59.817 60.000 27.73 0.00 39.76 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.