Multiple sequence alignment - TraesCS1A01G394400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G394400 chr1A 100.000 5248 0 0 1 5248 560407539 560402292 0.000000e+00 9692.0
1 TraesCS1A01G394400 chr1A 79.949 394 42 21 980 1340 128523085 128523474 6.740000e-64 255.0
2 TraesCS1A01G394400 chr1A 97.647 85 1 1 2481 2565 560404978 560404895 1.520000e-30 145.0
3 TraesCS1A01G394400 chr1A 97.647 85 1 1 2562 2645 560405059 560404975 1.520000e-30 145.0
4 TraesCS1A01G394400 chr1B 90.826 2725 163 29 2572 5248 645512621 645515306 0.000000e+00 3567.0
5 TraesCS1A01G394400 chr1B 86.579 760 85 6 1715 2467 645511877 645512626 0.000000e+00 822.0
6 TraesCS1A01G394400 chr1B 90.793 391 15 9 750 1140 645510905 645511274 2.180000e-138 503.0
7 TraesCS1A01G394400 chr1D 91.872 2473 124 34 2562 4981 467597671 467600119 0.000000e+00 3382.0
8 TraesCS1A01G394400 chr1D 84.316 746 77 23 1697 2440 467596957 467597664 0.000000e+00 693.0
9 TraesCS1A01G394400 chr1D 87.730 489 21 18 744 1206 467595962 467596437 7.740000e-148 534.0
10 TraesCS1A01G394400 chr1D 89.444 360 36 2 23 381 203251350 203251708 2.230000e-123 453.0
11 TraesCS1A01G394400 chr1D 85.057 87 10 2 2472 2557 467597661 467597745 9.360000e-13 86.1
12 TraesCS1A01G394400 chr1D 94.444 36 2 0 520 555 467595686 467595721 7.340000e-04 56.5
13 TraesCS1A01G394400 chr4A 89.276 746 52 12 2562 3282 663341102 663340360 0.000000e+00 909.0
14 TraesCS1A01G394400 chr4A 89.008 373 35 4 14 382 22527215 22527585 1.720000e-124 457.0
15 TraesCS1A01G394400 chr4A 86.364 308 31 6 2256 2560 663341321 663341022 5.070000e-85 326.0
16 TraesCS1A01G394400 chr4A 80.942 446 38 28 980 1388 663341907 663341472 5.100000e-80 309.0
17 TraesCS1A01G394400 chr5B 89.098 743 53 12 2562 3279 35355800 35356539 0.000000e+00 898.0
18 TraesCS1A01G394400 chr5B 80.092 437 42 28 987 1388 35355004 35355430 3.090000e-72 283.0
19 TraesCS1A01G394400 chr3D 91.667 372 27 4 13 382 281325096 281325465 3.620000e-141 512.0
20 TraesCS1A01G394400 chr3D 90.296 371 34 2 12 382 281309119 281309487 7.900000e-133 484.0
21 TraesCS1A01G394400 chr3D 90.113 354 34 1 28 381 281309479 281309831 4.790000e-125 459.0
22 TraesCS1A01G394400 chr6A 90.782 358 32 1 25 382 121079391 121079035 1.320000e-130 477.0
23 TraesCS1A01G394400 chr2A 90.358 363 33 2 24 385 100541540 100541901 4.760000e-130 475.0
24 TraesCS1A01G394400 chr5A 90.857 350 29 3 26 375 167115047 167115393 2.860000e-127 466.0
25 TraesCS1A01G394400 chr5A 83.700 227 30 4 980 1201 507856185 507855961 1.920000e-49 207.0
26 TraesCS1A01G394400 chr3A 89.702 369 30 5 13 375 367775854 367776220 1.030000e-126 464.0
27 TraesCS1A01G394400 chr3A 80.203 394 39 25 980 1340 160286796 160286409 5.210000e-65 259.0
28 TraesCS1A01G394400 chr7B 84.887 311 36 6 2253 2560 672629929 672630231 2.370000e-78 303.0
29 TraesCS1A01G394400 chr7B 80.587 443 43 23 980 1388 672629348 672629781 8.540000e-78 302.0
30 TraesCS1A01G394400 chr7A 86.636 217 23 3 980 1191 58320222 58320007 8.790000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G394400 chr1A 560402292 560407539 5247 True 3327.333333 9692 98.431333 1 5248 3 chr1A.!!$R1 5247
1 TraesCS1A01G394400 chr1B 645510905 645515306 4401 False 1630.666667 3567 89.399333 750 5248 3 chr1B.!!$F1 4498
2 TraesCS1A01G394400 chr1D 467595686 467600119 4433 False 950.320000 3382 88.683800 520 4981 5 chr1D.!!$F2 4461
3 TraesCS1A01G394400 chr4A 663340360 663341907 1547 True 514.666667 909 85.527333 980 3282 3 chr4A.!!$R1 2302
4 TraesCS1A01G394400 chr5B 35355004 35356539 1535 False 590.500000 898 84.595000 987 3279 2 chr5B.!!$F1 2292
5 TraesCS1A01G394400 chr3D 281309119 281309831 712 False 471.500000 484 90.204500 12 382 2 chr3D.!!$F2 370
6 TraesCS1A01G394400 chr7B 672629348 672630231 883 False 302.500000 303 82.737000 980 2560 2 chr7B.!!$F1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 462 0.034863 GCCGAACCCCATCACCTAAA 60.035 55.0 0.00 0.0 0.00 1.85 F
857 944 0.178935 CTCCTCCTCCTCATCCTCCC 60.179 65.0 0.00 0.0 0.00 4.30 F
1423 1609 0.108520 TATCCGCGCTTCTTTTCCGT 60.109 50.0 5.56 0.0 0.00 4.69 F
1676 1919 0.250513 CTCTGCCTGTGAGGGTTACC 59.749 60.0 0.00 0.0 35.37 2.85 F
2539 2856 0.034756 TGTAACTGCGAGTGCCACAT 59.965 50.0 0.00 0.0 41.78 3.21 F
2541 2858 0.320050 TAACTGCGAGTGCCACATCA 59.680 50.0 0.00 0.0 41.78 3.07 F
2542 2859 0.321919 AACTGCGAGTGCCACATCAT 60.322 50.0 0.00 0.0 41.78 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1344 1524 0.249911 GGGGCGGTGCAATCTAGTAG 60.250 60.000 0.00 0.0 0.00 2.57 R
2520 2837 0.034756 ATGTGGCACTCGCAGTTACA 59.965 50.000 19.83 0.0 41.24 2.41 R
2522 2839 0.320050 TGATGTGGCACTCGCAGTTA 59.680 50.000 19.83 0.0 41.24 2.24 R
3527 3951 0.247736 GCGAGTGAACATCCTGGACT 59.752 55.000 0.00 0.0 0.00 3.85 R
4043 4479 1.005275 ATGGAGCATCATCGGAGCG 60.005 57.895 0.00 0.0 36.25 5.03 R
4077 4513 1.296392 CAGGGTGATTCTGCACGGA 59.704 57.895 0.00 0.0 39.66 4.69 R
4328 4764 1.436600 AAGCGAGCTTCACATCACAG 58.563 50.000 4.26 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.959975 CCACACGTTGTTGCGGGG 61.960 66.667 0.00 0.00 39.99 5.73
60 61 1.091537 CACGTTGTTGCGGGGATATT 58.908 50.000 0.00 0.00 35.98 1.28
72 73 7.068839 TGTTGCGGGGATATTTTGTAACATATT 59.931 33.333 0.00 0.00 31.73 1.28
74 75 8.012957 TGCGGGGATATTTTGTAACATATTTT 57.987 30.769 0.00 0.00 0.00 1.82
249 250 4.157105 TCATGCAGGTTTCATGATGAAGTG 59.843 41.667 8.01 8.53 43.63 3.16
250 251 3.753815 TGCAGGTTTCATGATGAAGTGA 58.246 40.909 8.01 0.00 37.70 3.41
289 290 5.278022 GCGAGACATATGATAGTGAGTGTGA 60.278 44.000 10.38 0.00 0.00 3.58
290 291 6.729187 CGAGACATATGATAGTGAGTGTGAA 58.271 40.000 10.38 0.00 0.00 3.18
299 300 6.291377 TGATAGTGAGTGTGAAGCTTTTCTT 58.709 36.000 0.00 0.00 37.83 2.52
311 312 4.916983 AGCTTTTCTTGTGCATGTTGTA 57.083 36.364 0.00 0.00 0.00 2.41
316 317 6.546972 TTTTCTTGTGCATGTTGTACGATA 57.453 33.333 0.00 0.00 35.67 2.92
354 355 6.871492 TGCACGTTGAGAGAAATAATTAGTGA 59.129 34.615 0.00 0.00 0.00 3.41
357 358 7.759886 CACGTTGAGAGAAATAATTAGTGAGGA 59.240 37.037 0.00 0.00 0.00 3.71
362 363 9.702253 TGAGAGAAATAATTAGTGAGGACTAGT 57.298 33.333 0.00 0.00 36.03 2.57
394 395 9.091220 AGATATAAAAGATAGTACACAGGACCC 57.909 37.037 0.00 0.00 0.00 4.46
395 396 4.467198 AAAAGATAGTACACAGGACCCG 57.533 45.455 0.00 0.00 0.00 5.28
396 397 2.068834 AGATAGTACACAGGACCCGG 57.931 55.000 0.00 0.00 0.00 5.73
397 398 1.287146 AGATAGTACACAGGACCCGGT 59.713 52.381 0.00 0.00 0.00 5.28
398 399 1.680207 GATAGTACACAGGACCCGGTC 59.320 57.143 9.30 9.30 0.00 4.79
399 400 0.700564 TAGTACACAGGACCCGGTCT 59.299 55.000 17.27 0.00 32.47 3.85
400 401 0.898789 AGTACACAGGACCCGGTCTG 60.899 60.000 17.27 14.63 32.47 3.51
401 402 1.154454 TACACAGGACCCGGTCTGT 59.846 57.895 17.27 15.27 32.47 3.41
402 403 0.405198 TACACAGGACCCGGTCTGTA 59.595 55.000 17.27 14.32 32.47 2.74
403 404 0.898789 ACACAGGACCCGGTCTGTAG 60.899 60.000 17.27 14.14 32.47 2.74
404 405 0.611062 CACAGGACCCGGTCTGTAGA 60.611 60.000 17.27 0.00 32.47 2.59
405 406 0.335361 ACAGGACCCGGTCTGTAGAT 59.665 55.000 17.27 0.00 32.47 1.98
406 407 1.567649 ACAGGACCCGGTCTGTAGATA 59.432 52.381 17.27 0.00 32.47 1.98
407 408 2.177233 ACAGGACCCGGTCTGTAGATAT 59.823 50.000 17.27 0.00 32.47 1.63
408 409 2.820787 CAGGACCCGGTCTGTAGATATC 59.179 54.545 17.27 0.00 32.47 1.63
409 410 2.445905 AGGACCCGGTCTGTAGATATCA 59.554 50.000 17.27 0.00 32.47 2.15
410 411 3.076182 AGGACCCGGTCTGTAGATATCAT 59.924 47.826 17.27 0.00 32.47 2.45
411 412 3.444388 GGACCCGGTCTGTAGATATCATC 59.556 52.174 17.27 0.00 32.47 2.92
412 413 4.079970 GACCCGGTCTGTAGATATCATCA 58.920 47.826 10.59 2.84 0.00 3.07
413 414 4.480115 ACCCGGTCTGTAGATATCATCAA 58.520 43.478 5.32 0.00 0.00 2.57
414 415 4.281182 ACCCGGTCTGTAGATATCATCAAC 59.719 45.833 5.32 0.00 0.00 3.18
415 416 4.524714 CCCGGTCTGTAGATATCATCAACT 59.475 45.833 5.32 0.00 0.00 3.16
416 417 5.011125 CCCGGTCTGTAGATATCATCAACTT 59.989 44.000 5.32 0.00 0.00 2.66
417 418 5.923114 CCGGTCTGTAGATATCATCAACTTG 59.077 44.000 5.32 0.00 0.00 3.16
418 419 6.239036 CCGGTCTGTAGATATCATCAACTTGA 60.239 42.308 5.32 0.00 0.00 3.02
419 420 7.374272 CGGTCTGTAGATATCATCAACTTGAT 58.626 38.462 5.32 0.00 37.65 2.57
420 421 7.540400 CGGTCTGTAGATATCATCAACTTGATC 59.460 40.741 5.32 0.00 34.28 2.92
421 422 7.540400 GGTCTGTAGATATCATCAACTTGATCG 59.460 40.741 5.32 0.00 34.28 3.69
422 423 7.540400 GTCTGTAGATATCATCAACTTGATCGG 59.460 40.741 5.32 0.00 34.28 4.18
423 424 7.231519 TCTGTAGATATCATCAACTTGATCGGT 59.768 37.037 5.32 0.00 34.28 4.69
424 425 7.371159 TGTAGATATCATCAACTTGATCGGTC 58.629 38.462 5.32 0.00 34.28 4.79
425 426 6.410942 AGATATCATCAACTTGATCGGTCA 57.589 37.500 5.32 0.00 34.28 4.02
426 427 6.820335 AGATATCATCAACTTGATCGGTCAA 58.180 36.000 11.31 11.31 41.89 3.18
427 428 7.275183 AGATATCATCAACTTGATCGGTCAAA 58.725 34.615 13.02 0.00 43.39 2.69
428 429 7.770433 AGATATCATCAACTTGATCGGTCAAAA 59.230 33.333 13.02 0.00 43.39 2.44
429 430 6.764308 ATCATCAACTTGATCGGTCAAAAT 57.236 33.333 13.02 0.51 43.39 1.82
430 431 7.864108 ATCATCAACTTGATCGGTCAAAATA 57.136 32.000 13.02 0.00 43.39 1.40
431 432 7.072177 TCATCAACTTGATCGGTCAAAATAC 57.928 36.000 13.02 0.00 43.39 1.89
432 433 6.878923 TCATCAACTTGATCGGTCAAAATACT 59.121 34.615 13.02 0.00 43.39 2.12
433 434 8.038351 TCATCAACTTGATCGGTCAAAATACTA 58.962 33.333 13.02 0.00 43.39 1.82
434 435 7.591006 TCAACTTGATCGGTCAAAATACTAC 57.409 36.000 13.02 0.00 43.39 2.73
435 436 7.383687 TCAACTTGATCGGTCAAAATACTACT 58.616 34.615 13.02 0.00 43.39 2.57
436 437 7.544566 TCAACTTGATCGGTCAAAATACTACTC 59.455 37.037 13.02 0.00 43.39 2.59
437 438 6.338937 ACTTGATCGGTCAAAATACTACTCC 58.661 40.000 13.02 0.00 43.39 3.85
438 439 5.925506 TGATCGGTCAAAATACTACTCCA 57.074 39.130 0.00 0.00 0.00 3.86
439 440 6.288941 TGATCGGTCAAAATACTACTCCAA 57.711 37.500 0.00 0.00 0.00 3.53
440 441 6.103997 TGATCGGTCAAAATACTACTCCAAC 58.896 40.000 0.00 0.00 0.00 3.77
441 442 4.487948 TCGGTCAAAATACTACTCCAACG 58.512 43.478 0.00 0.00 0.00 4.10
442 443 3.615496 CGGTCAAAATACTACTCCAACGG 59.385 47.826 0.00 0.00 0.00 4.44
443 444 3.373130 GGTCAAAATACTACTCCAACGGC 59.627 47.826 0.00 0.00 0.00 5.68
444 445 3.373130 GTCAAAATACTACTCCAACGGCC 59.627 47.826 0.00 0.00 0.00 6.13
445 446 2.304751 AAATACTACTCCAACGGCCG 57.695 50.000 26.86 26.86 0.00 6.13
446 447 1.477553 AATACTACTCCAACGGCCGA 58.522 50.000 35.90 8.44 0.00 5.54
447 448 1.477553 ATACTACTCCAACGGCCGAA 58.522 50.000 35.90 13.11 0.00 4.30
448 449 0.527565 TACTACTCCAACGGCCGAAC 59.472 55.000 35.90 0.00 0.00 3.95
449 450 1.447314 CTACTCCAACGGCCGAACC 60.447 63.158 35.90 0.00 0.00 3.62
450 451 2.847435 CTACTCCAACGGCCGAACCC 62.847 65.000 35.90 0.00 33.26 4.11
453 454 4.733542 CCAACGGCCGAACCCCAT 62.734 66.667 35.90 3.57 33.26 4.00
454 455 3.131478 CAACGGCCGAACCCCATC 61.131 66.667 35.90 0.00 33.26 3.51
455 456 3.642503 AACGGCCGAACCCCATCA 61.643 61.111 35.90 0.00 33.26 3.07
456 457 3.912745 AACGGCCGAACCCCATCAC 62.913 63.158 35.90 0.00 33.26 3.06
458 459 3.728373 GGCCGAACCCCATCACCT 61.728 66.667 0.00 0.00 0.00 4.00
459 460 2.372074 GGCCGAACCCCATCACCTA 61.372 63.158 0.00 0.00 0.00 3.08
460 461 1.605453 GCCGAACCCCATCACCTAA 59.395 57.895 0.00 0.00 0.00 2.69
461 462 0.034863 GCCGAACCCCATCACCTAAA 60.035 55.000 0.00 0.00 0.00 1.85
462 463 1.614850 GCCGAACCCCATCACCTAAAA 60.615 52.381 0.00 0.00 0.00 1.52
463 464 2.797786 CCGAACCCCATCACCTAAAAA 58.202 47.619 0.00 0.00 0.00 1.94
464 465 2.752903 CCGAACCCCATCACCTAAAAAG 59.247 50.000 0.00 0.00 0.00 2.27
465 466 2.752903 CGAACCCCATCACCTAAAAAGG 59.247 50.000 0.00 0.00 0.00 3.11
466 467 2.231716 ACCCCATCACCTAAAAAGGC 57.768 50.000 0.00 0.00 0.00 4.35
467 468 1.431243 ACCCCATCACCTAAAAAGGCA 59.569 47.619 0.00 0.00 0.00 4.75
468 469 2.158234 ACCCCATCACCTAAAAAGGCAA 60.158 45.455 0.00 0.00 0.00 4.52
469 470 2.903135 CCCCATCACCTAAAAAGGCAAA 59.097 45.455 0.00 0.00 0.00 3.68
470 471 3.306710 CCCCATCACCTAAAAAGGCAAAC 60.307 47.826 0.00 0.00 0.00 2.93
471 472 3.574614 CCATCACCTAAAAAGGCAAACG 58.425 45.455 0.00 0.00 0.00 3.60
472 473 3.005367 CCATCACCTAAAAAGGCAAACGT 59.995 43.478 0.00 0.00 0.00 3.99
473 474 3.701532 TCACCTAAAAAGGCAAACGTG 57.298 42.857 0.00 0.00 0.00 4.49
474 475 3.280295 TCACCTAAAAAGGCAAACGTGA 58.720 40.909 0.00 0.00 0.00 4.35
475 476 3.065648 TCACCTAAAAAGGCAAACGTGAC 59.934 43.478 0.00 0.00 0.00 3.67
476 477 2.359848 ACCTAAAAAGGCAAACGTGACC 59.640 45.455 0.00 0.00 30.22 4.02
477 478 2.621526 CCTAAAAAGGCAAACGTGACCT 59.378 45.455 0.00 0.00 30.22 3.85
478 479 2.863401 AAAAAGGCAAACGTGACCTC 57.137 45.000 4.88 0.00 30.22 3.85
479 480 0.661020 AAAAGGCAAACGTGACCTCG 59.339 50.000 4.88 0.00 30.22 4.63
480 481 0.179067 AAAGGCAAACGTGACCTCGA 60.179 50.000 4.88 0.00 30.22 4.04
481 482 0.878961 AAGGCAAACGTGACCTCGAC 60.879 55.000 4.88 0.00 30.22 4.20
482 483 1.593209 GGCAAACGTGACCTCGACA 60.593 57.895 0.00 0.00 34.70 4.35
483 484 1.155424 GGCAAACGTGACCTCGACAA 61.155 55.000 0.00 0.00 34.70 3.18
484 485 0.865769 GCAAACGTGACCTCGACAAT 59.134 50.000 0.00 0.00 34.70 2.71
485 486 1.398451 GCAAACGTGACCTCGACAATG 60.398 52.381 0.00 0.00 34.70 2.82
486 487 0.865769 AAACGTGACCTCGACAATGC 59.134 50.000 0.00 0.00 34.70 3.56
487 488 1.282248 AACGTGACCTCGACAATGCG 61.282 55.000 0.00 0.00 34.70 4.73
488 489 2.778679 GTGACCTCGACAATGCGC 59.221 61.111 0.00 0.00 0.00 6.09
489 490 2.434185 TGACCTCGACAATGCGCC 60.434 61.111 4.18 0.00 0.00 6.53
490 491 2.434185 GACCTCGACAATGCGCCA 60.434 61.111 4.18 0.00 0.00 5.69
491 492 1.815421 GACCTCGACAATGCGCCAT 60.815 57.895 4.18 0.00 0.00 4.40
492 493 2.040213 GACCTCGACAATGCGCCATG 62.040 60.000 4.18 6.44 0.00 3.66
493 494 2.711311 CTCGACAATGCGCCATGG 59.289 61.111 7.63 7.63 0.00 3.66
494 495 1.815003 CTCGACAATGCGCCATGGA 60.815 57.895 18.40 0.00 0.00 3.41
495 496 2.040213 CTCGACAATGCGCCATGGAC 62.040 60.000 18.40 7.14 0.00 4.02
496 497 2.800736 GACAATGCGCCATGGACC 59.199 61.111 18.40 5.43 0.00 4.46
497 498 1.750399 GACAATGCGCCATGGACCT 60.750 57.895 18.40 0.00 0.00 3.85
498 499 1.996786 GACAATGCGCCATGGACCTG 61.997 60.000 18.40 9.10 0.00 4.00
499 500 3.142838 AATGCGCCATGGACCTGC 61.143 61.111 18.40 13.60 0.00 4.85
504 505 4.195334 GCCATGGACCTGCCCGAT 62.195 66.667 18.40 0.00 34.97 4.18
505 506 2.203252 CCATGGACCTGCCCGATG 60.203 66.667 5.56 0.00 34.97 3.84
506 507 2.745308 CCATGGACCTGCCCGATGA 61.745 63.158 5.56 0.00 34.97 2.92
507 508 1.227764 CATGGACCTGCCCGATGAG 60.228 63.158 0.00 0.00 34.97 2.90
508 509 1.383109 ATGGACCTGCCCGATGAGA 60.383 57.895 0.00 0.00 34.97 3.27
509 510 0.982852 ATGGACCTGCCCGATGAGAA 60.983 55.000 0.00 0.00 34.97 2.87
510 511 1.144936 GGACCTGCCCGATGAGAAG 59.855 63.158 0.00 0.00 0.00 2.85
511 512 1.522580 GACCTGCCCGATGAGAAGC 60.523 63.158 0.00 0.00 0.00 3.86
512 513 2.244117 GACCTGCCCGATGAGAAGCA 62.244 60.000 0.00 0.00 0.00 3.91
513 514 1.078214 CCTGCCCGATGAGAAGCAA 60.078 57.895 0.00 0.00 34.26 3.91
514 515 1.094073 CCTGCCCGATGAGAAGCAAG 61.094 60.000 0.00 0.00 34.26 4.01
515 516 1.712977 CTGCCCGATGAGAAGCAAGC 61.713 60.000 0.00 0.00 34.26 4.01
516 517 1.746615 GCCCGATGAGAAGCAAGCA 60.747 57.895 0.00 0.00 0.00 3.91
517 518 1.308069 GCCCGATGAGAAGCAAGCAA 61.308 55.000 0.00 0.00 0.00 3.91
518 519 1.386533 CCCGATGAGAAGCAAGCAAT 58.613 50.000 0.00 0.00 0.00 3.56
519 520 1.065102 CCCGATGAGAAGCAAGCAATG 59.935 52.381 0.00 0.00 0.00 2.82
568 581 2.019951 CGTCCCCACGTCAAAGTCG 61.020 63.158 0.00 0.00 41.42 4.18
570 583 3.411351 CCCCACGTCAAAGTCGCG 61.411 66.667 0.00 0.00 0.00 5.87
615 646 4.830765 TAGCCGTGCATCACCGGC 62.831 66.667 26.01 26.01 46.21 6.13
688 775 4.476752 GGCCGCCCCGTACATGAA 62.477 66.667 0.00 0.00 0.00 2.57
690 777 2.888534 CCGCCCCGTACATGAACG 60.889 66.667 0.00 0.00 42.49 3.95
691 778 2.182284 CGCCCCGTACATGAACGA 59.818 61.111 0.00 0.00 45.68 3.85
692 779 1.446445 CGCCCCGTACATGAACGAA 60.446 57.895 0.00 0.00 45.68 3.85
693 780 1.689352 CGCCCCGTACATGAACGAAC 61.689 60.000 0.00 0.00 45.68 3.95
697 784 0.719465 CCGTACATGAACGAACCAGC 59.281 55.000 0.00 0.00 45.68 4.85
698 785 0.719465 CGTACATGAACGAACCAGCC 59.281 55.000 0.00 0.00 45.68 4.85
699 786 1.084289 GTACATGAACGAACCAGCCC 58.916 55.000 0.00 0.00 0.00 5.19
700 787 0.687920 TACATGAACGAACCAGCCCA 59.312 50.000 0.00 0.00 0.00 5.36
701 788 0.606401 ACATGAACGAACCAGCCCAG 60.606 55.000 0.00 0.00 0.00 4.45
702 789 0.321564 CATGAACGAACCAGCCCAGA 60.322 55.000 0.00 0.00 0.00 3.86
703 790 0.400213 ATGAACGAACCAGCCCAGAA 59.600 50.000 0.00 0.00 0.00 3.02
704 791 0.534203 TGAACGAACCAGCCCAGAAC 60.534 55.000 0.00 0.00 0.00 3.01
705 792 1.228154 AACGAACCAGCCCAGAACC 60.228 57.895 0.00 0.00 0.00 3.62
706 793 1.990160 AACGAACCAGCCCAGAACCA 61.990 55.000 0.00 0.00 0.00 3.67
707 794 1.228124 CGAACCAGCCCAGAACCAA 60.228 57.895 0.00 0.00 0.00 3.67
708 795 1.237285 CGAACCAGCCCAGAACCAAG 61.237 60.000 0.00 0.00 0.00 3.61
709 796 1.527433 GAACCAGCCCAGAACCAAGC 61.527 60.000 0.00 0.00 0.00 4.01
710 797 3.058160 CCAGCCCAGAACCAAGCG 61.058 66.667 0.00 0.00 0.00 4.68
711 798 3.058160 CAGCCCAGAACCAAGCGG 61.058 66.667 0.00 0.00 38.77 5.52
712 799 4.351054 AGCCCAGAACCAAGCGGG 62.351 66.667 0.00 0.00 42.03 6.13
714 801 4.740822 CCCAGAACCAAGCGGGGG 62.741 72.222 2.46 0.00 42.91 5.40
768 855 1.141234 GCCTATATCTACCCGCGGC 59.859 63.158 22.85 0.00 0.00 6.53
851 938 3.413105 AGCTTTACTCCTCCTCCTCAT 57.587 47.619 0.00 0.00 0.00 2.90
857 944 0.178935 CTCCTCCTCCTCATCCTCCC 60.179 65.000 0.00 0.00 0.00 4.30
858 945 1.152139 CCTCCTCCTCATCCTCCCC 60.152 68.421 0.00 0.00 0.00 4.81
860 947 0.267356 CTCCTCCTCATCCTCCCCTT 59.733 60.000 0.00 0.00 0.00 3.95
862 949 1.135960 CCTCCTCATCCTCCCCTTTC 58.864 60.000 0.00 0.00 0.00 2.62
863 950 1.344906 CCTCCTCATCCTCCCCTTTCT 60.345 57.143 0.00 0.00 0.00 2.52
864 951 2.046292 CTCCTCATCCTCCCCTTTCTC 58.954 57.143 0.00 0.00 0.00 2.87
867 954 0.725133 TCATCCTCCCCTTTCTCCCT 59.275 55.000 0.00 0.00 0.00 4.20
957 1064 2.939261 GCTTCCGTCCGGAGTCCAA 61.939 63.158 3.06 0.00 46.06 3.53
1150 1264 1.735198 CCGCGCCTCGTGTTTTCTA 60.735 57.895 0.00 0.00 35.46 2.10
1154 1268 1.652619 GCGCCTCGTGTTTTCTACTAC 59.347 52.381 0.00 0.00 0.00 2.73
1156 1270 2.915463 CGCCTCGTGTTTTCTACTACTG 59.085 50.000 0.00 0.00 0.00 2.74
1158 1272 4.304939 GCCTCGTGTTTTCTACTACTGTT 58.695 43.478 0.00 0.00 0.00 3.16
1162 1276 6.700520 CCTCGTGTTTTCTACTACTGTTTTCT 59.299 38.462 0.00 0.00 0.00 2.52
1164 1278 9.241317 CTCGTGTTTTCTACTACTGTTTTCTTA 57.759 33.333 0.00 0.00 0.00 2.10
1244 1421 2.278857 CTCGTCCTGATTCGCCGG 60.279 66.667 0.00 0.00 0.00 6.13
1269 1446 4.541482 GCCGACATGTGCATGCCG 62.541 66.667 16.68 12.68 42.92 5.69
1292 1472 2.507769 GCCTTGCGCTGGATTTGC 60.508 61.111 21.01 5.68 0.00 3.68
1317 1497 1.133790 CTGCTTGCCATTTCTAGGTGC 59.866 52.381 0.00 0.00 0.00 5.01
1318 1498 1.176527 GCTTGCCATTTCTAGGTGCA 58.823 50.000 0.00 0.00 0.00 4.57
1324 1504 2.359900 CCATTTCTAGGTGCACAGGAC 58.640 52.381 20.43 0.19 0.00 3.85
1325 1505 2.359900 CATTTCTAGGTGCACAGGACC 58.640 52.381 20.43 0.00 0.00 4.46
1340 1520 5.185454 CACAGGACCTTCAAATATGCTACA 58.815 41.667 0.00 0.00 0.00 2.74
1341 1521 5.295292 CACAGGACCTTCAAATATGCTACAG 59.705 44.000 0.00 0.00 0.00 2.74
1342 1522 5.045578 ACAGGACCTTCAAATATGCTACAGT 60.046 40.000 0.00 0.00 0.00 3.55
1343 1523 6.156256 ACAGGACCTTCAAATATGCTACAGTA 59.844 38.462 0.00 0.00 0.00 2.74
1344 1524 6.480320 CAGGACCTTCAAATATGCTACAGTAC 59.520 42.308 0.00 0.00 0.00 2.73
1345 1525 6.384305 AGGACCTTCAAATATGCTACAGTACT 59.616 38.462 0.00 0.00 0.00 2.73
1346 1526 7.563924 AGGACCTTCAAATATGCTACAGTACTA 59.436 37.037 0.00 0.00 0.00 1.82
1359 1542 4.634184 ACAGTACTACTAGATTGCACCG 57.366 45.455 0.00 0.00 0.00 4.94
1363 1546 0.249911 CTACTAGATTGCACCGCCCC 60.250 60.000 0.00 0.00 0.00 5.80
1389 1575 1.027357 CGATCTGGGCCAAGGATTTG 58.973 55.000 7.48 1.37 0.00 2.32
1409 1595 1.004277 GCTTGACGCCGAGATATCCG 61.004 60.000 0.00 2.97 0.00 4.18
1410 1596 1.004277 CTTGACGCCGAGATATCCGC 61.004 60.000 0.00 0.00 0.00 5.54
1416 1602 1.581954 CCGAGATATCCGCGCTTCT 59.418 57.895 5.56 0.00 36.73 2.85
1423 1609 0.108520 TATCCGCGCTTCTTTTCCGT 60.109 50.000 5.56 0.00 0.00 4.69
1433 1619 4.612412 TTTTCCGTCGGCCAGCGT 62.612 61.111 6.34 0.00 0.00 5.07
1434 1620 4.612412 TTTCCGTCGGCCAGCGTT 62.612 61.111 6.34 0.00 0.00 4.84
1438 1624 2.522638 CCGTCGGCCAGCGTTATTC 61.523 63.158 2.24 0.00 0.00 1.75
1439 1625 2.856346 CGTCGGCCAGCGTTATTCG 61.856 63.158 2.24 0.00 43.12 3.34
1454 1640 4.466828 GTTATTCGCGCATATTTCTGCAT 58.533 39.130 8.75 0.00 42.40 3.96
1460 1646 3.607542 CGCGCATATTTCTGCATCATTCA 60.608 43.478 8.75 0.00 42.40 2.57
1462 1648 4.557690 GCGCATATTTCTGCATCATTCATC 59.442 41.667 0.30 0.00 42.40 2.92
1464 1650 5.567915 CGCATATTTCTGCATCATTCATCAC 59.432 40.000 0.00 0.00 42.40 3.06
1486 1672 2.976490 GCCATGGCTCCTGGTGTCT 61.976 63.158 29.98 0.00 36.10 3.41
1487 1673 1.077930 CCATGGCTCCTGGTGTCTG 60.078 63.158 0.00 0.00 0.00 3.51
1488 1674 1.681666 CATGGCTCCTGGTGTCTGT 59.318 57.895 1.75 0.00 0.00 3.41
1489 1675 0.392193 CATGGCTCCTGGTGTCTGTC 60.392 60.000 1.75 0.00 0.00 3.51
1493 1679 0.603975 GCTCCTGGTGTCTGTCAACC 60.604 60.000 0.00 0.00 31.75 3.77
1500 1686 2.243957 TGTCTGTCAACCGCTTGCG 61.244 57.895 8.14 8.14 0.00 4.85
1508 1694 4.645921 ACCGCTTGCGGCAAAAGC 62.646 61.111 30.58 15.98 45.30 3.51
1509 1695 4.347453 CCGCTTGCGGCAAAAGCT 62.347 61.111 21.17 0.00 46.33 3.74
1510 1696 3.101428 CGCTTGCGGCAAAAGCTG 61.101 61.111 20.70 12.44 46.33 4.24
1511 1697 2.735857 GCTTGCGGCAAAAGCTGG 60.736 61.111 17.13 4.99 45.31 4.85
1512 1698 2.048877 CTTGCGGCAAAAGCTGGG 60.049 61.111 17.13 0.00 35.28 4.45
1547 1752 2.438075 CTGCTGCTGCTTCCTCCC 60.438 66.667 17.00 0.00 40.48 4.30
1548 1753 4.399395 TGCTGCTGCTTCCTCCCG 62.399 66.667 17.00 0.00 40.48 5.14
1557 1762 2.833582 TTCCTCCCGCGGCTCTAG 60.834 66.667 22.85 13.60 0.00 2.43
1560 1765 1.604023 CCTCCCGCGGCTCTAGTAT 60.604 63.158 22.85 0.00 0.00 2.12
1561 1766 1.581954 CTCCCGCGGCTCTAGTATG 59.418 63.158 22.85 2.11 0.00 2.39
1563 1768 2.049063 CCGCGGCTCTAGTATGCC 60.049 66.667 14.67 12.02 45.25 4.40
1565 1808 1.081108 CGCGGCTCTAGTATGCCTC 60.081 63.158 17.19 11.24 46.42 4.70
1582 1825 2.170607 GCCTCTGGCCTCATTACTGTTA 59.829 50.000 3.32 0.00 44.06 2.41
1583 1826 3.181450 GCCTCTGGCCTCATTACTGTTAT 60.181 47.826 3.32 0.00 44.06 1.89
1584 1827 4.040461 GCCTCTGGCCTCATTACTGTTATA 59.960 45.833 3.32 0.00 44.06 0.98
1585 1828 5.542779 CCTCTGGCCTCATTACTGTTATAC 58.457 45.833 3.32 0.00 0.00 1.47
1586 1829 5.070446 CCTCTGGCCTCATTACTGTTATACA 59.930 44.000 3.32 0.00 0.00 2.29
1588 1831 7.136822 TCTGGCCTCATTACTGTTATACAAT 57.863 36.000 3.32 0.00 0.00 2.71
1589 1832 8.257602 TCTGGCCTCATTACTGTTATACAATA 57.742 34.615 3.32 0.00 0.00 1.90
1590 1833 8.367911 TCTGGCCTCATTACTGTTATACAATAG 58.632 37.037 3.32 0.00 0.00 1.73
1591 1834 8.029782 TGGCCTCATTACTGTTATACAATAGT 57.970 34.615 3.32 0.00 39.24 2.12
1592 1835 9.150028 TGGCCTCATTACTGTTATACAATAGTA 57.850 33.333 3.32 0.00 37.33 1.82
1593 1836 9.640963 GGCCTCATTACTGTTATACAATAGTAG 57.359 37.037 0.00 0.00 38.91 2.57
1615 1858 5.974108 AGTACATCATAACCTAGTTGCGTT 58.026 37.500 0.00 0.00 0.00 4.84
1631 1874 3.717707 TGCGTTGCTATCTAGATCCAAC 58.282 45.455 25.09 25.09 33.53 3.77
1633 1876 3.309388 CGTTGCTATCTAGATCCAACGG 58.691 50.000 35.31 25.92 44.11 4.44
1634 1877 3.654414 GTTGCTATCTAGATCCAACGGG 58.346 50.000 22.79 5.87 0.00 5.28
1642 1885 1.069090 GATCCAACGGGCATCGCTA 59.931 57.895 0.00 0.00 43.89 4.26
1649 1892 3.004315 CCAACGGGCATCGCTAAAATAAT 59.996 43.478 0.00 0.00 43.89 1.28
1650 1893 4.499019 CCAACGGGCATCGCTAAAATAATT 60.499 41.667 0.00 0.00 43.89 1.40
1651 1894 4.911514 ACGGGCATCGCTAAAATAATTT 57.088 36.364 0.00 0.00 43.89 1.82
1652 1895 4.606961 ACGGGCATCGCTAAAATAATTTG 58.393 39.130 0.00 0.00 43.89 2.32
1653 1896 4.097286 ACGGGCATCGCTAAAATAATTTGT 59.903 37.500 0.00 0.00 43.89 2.83
1654 1897 5.040635 CGGGCATCGCTAAAATAATTTGTT 58.959 37.500 0.00 0.00 0.00 2.83
1655 1898 5.051774 CGGGCATCGCTAAAATAATTTGTTG 60.052 40.000 0.00 0.00 0.00 3.33
1656 1899 5.234116 GGGCATCGCTAAAATAATTTGTTGG 59.766 40.000 0.00 0.00 0.00 3.77
1657 1900 5.276820 GGCATCGCTAAAATAATTTGTTGGC 60.277 40.000 0.00 0.00 0.00 4.52
1658 1901 5.519927 GCATCGCTAAAATAATTTGTTGGCT 59.480 36.000 0.00 0.00 0.00 4.75
1675 1918 0.391793 GCTCTGCCTGTGAGGGTTAC 60.392 60.000 0.00 0.00 35.37 2.50
1676 1919 0.250513 CTCTGCCTGTGAGGGTTACC 59.749 60.000 0.00 0.00 35.37 2.85
1678 1921 0.620556 CTGCCTGTGAGGGTTACCAT 59.379 55.000 2.98 0.00 40.13 3.55
1681 1924 2.116238 GCCTGTGAGGGTTACCATCTA 58.884 52.381 17.14 5.62 40.13 1.98
1693 1938 6.624021 AGGGTTACCATCTATTACTGGGAAAT 59.376 38.462 2.98 0.00 37.11 2.17
1703 1973 7.466804 TCTATTACTGGGAAATTTCACCTGTT 58.533 34.615 27.16 19.07 37.56 3.16
1724 1994 5.468746 TGTTGTTGTCAGCTGTTACCTTATC 59.531 40.000 14.67 0.00 0.00 1.75
1765 2035 8.535335 TGATAATTGGATAGTAGCTCAGGATTC 58.465 37.037 0.00 0.00 0.00 2.52
1768 2038 3.576118 TGGATAGTAGCTCAGGATTCAGC 59.424 47.826 0.00 0.00 35.73 4.26
1790 2061 4.436584 GCTATTTGTCAGCTGTGCAACTAG 60.437 45.833 26.51 26.51 38.04 2.57
1807 2078 5.355596 CAACTAGGAGAGTAGCTTGAATGG 58.644 45.833 0.00 0.00 37.44 3.16
1808 2079 4.615513 ACTAGGAGAGTAGCTTGAATGGT 58.384 43.478 0.00 0.00 36.27 3.55
1809 2080 3.902881 AGGAGAGTAGCTTGAATGGTG 57.097 47.619 0.00 0.00 0.00 4.17
1810 2081 2.093235 AGGAGAGTAGCTTGAATGGTGC 60.093 50.000 0.00 0.00 0.00 5.01
1811 2082 2.093235 GGAGAGTAGCTTGAATGGTGCT 60.093 50.000 0.00 0.00 40.43 4.40
1812 2083 3.604582 GAGAGTAGCTTGAATGGTGCTT 58.395 45.455 0.00 0.00 38.15 3.91
1813 2084 4.383118 GGAGAGTAGCTTGAATGGTGCTTA 60.383 45.833 0.00 0.00 38.15 3.09
1814 2085 5.363939 GAGAGTAGCTTGAATGGTGCTTAT 58.636 41.667 0.00 0.00 38.15 1.73
1821 2092 4.214332 GCTTGAATGGTGCTTATACTAGCC 59.786 45.833 0.00 0.00 40.49 3.93
1833 2115 5.568296 GCTTATACTAGCCGTAGATTTGTCG 59.432 44.000 0.00 0.00 35.06 4.35
1846 2128 3.741344 AGATTTGTCGACCTCTGTTTTCG 59.259 43.478 14.12 0.00 0.00 3.46
1862 2144 0.756903 TTCGCCCTACCTATGCCTTC 59.243 55.000 0.00 0.00 0.00 3.46
1864 2146 0.687354 CGCCCTACCTATGCCTTCAT 59.313 55.000 0.00 0.00 36.73 2.57
1865 2147 1.609061 CGCCCTACCTATGCCTTCATG 60.609 57.143 0.00 0.00 34.22 3.07
1866 2148 1.884067 GCCCTACCTATGCCTTCATGC 60.884 57.143 0.00 0.00 34.22 4.06
1868 2150 2.906389 CCCTACCTATGCCTTCATGCTA 59.094 50.000 0.00 0.00 34.22 3.49
1869 2151 3.327757 CCCTACCTATGCCTTCATGCTAA 59.672 47.826 0.00 0.00 34.22 3.09
1870 2152 4.018960 CCCTACCTATGCCTTCATGCTAAT 60.019 45.833 0.00 0.00 34.22 1.73
1872 2154 6.006449 CCTACCTATGCCTTCATGCTAATTT 58.994 40.000 0.00 0.00 34.22 1.82
1874 2156 6.796785 ACCTATGCCTTCATGCTAATTTTT 57.203 33.333 0.00 0.00 34.22 1.94
1900 2184 6.040842 TGTGGTCGTTAGTCCTTACTAGTTTT 59.959 38.462 0.00 0.00 39.36 2.43
1930 2214 5.973565 CCGTTCTTCAATTATGCAGGATTTC 59.026 40.000 0.00 0.00 0.00 2.17
1978 2262 1.368641 TTAGCATGCGCGAACAAGAT 58.631 45.000 12.10 0.00 45.49 2.40
2011 2295 9.403583 TCCAAAGAAATTATAACGGAAGCTATT 57.596 29.630 0.00 0.00 0.00 1.73
2038 2322 3.358707 TGCATGAACAAACAAGCAGAG 57.641 42.857 0.00 0.00 39.07 3.35
2080 2364 1.002430 GTCATCAGTGGAAGGCTGTCA 59.998 52.381 0.00 0.00 35.60 3.58
2177 2461 5.801350 CGAAGCAAATCTGAACTTCCATA 57.199 39.130 0.00 0.00 36.08 2.74
2206 2490 4.315803 ACAAGAACGTCAAAGAGGTATGG 58.684 43.478 0.00 0.00 30.22 2.74
2226 2510 2.097791 GGCTTGTTTTACACCGACACAA 59.902 45.455 0.00 0.00 0.00 3.33
2235 2519 1.227147 ACCGACACAAGGACACACG 60.227 57.895 0.00 0.00 0.00 4.49
2290 2574 7.661536 ATGTTGCTTTCTAGGAGTAGTATGA 57.338 36.000 0.00 0.00 0.00 2.15
2304 2588 8.606830 AGGAGTAGTATGAAAATTTCTGGTCTT 58.393 33.333 7.29 0.00 0.00 3.01
2347 2631 4.019174 AGTGGATTATGTTTGCCTTGAGG 58.981 43.478 0.00 0.00 38.53 3.86
2361 2645 2.224606 CTTGAGGCTTGAGCTGTGAAA 58.775 47.619 0.00 0.00 41.70 2.69
2362 2646 1.888215 TGAGGCTTGAGCTGTGAAAG 58.112 50.000 0.00 0.00 41.70 2.62
2366 2650 3.026694 AGGCTTGAGCTGTGAAAGTTTT 58.973 40.909 0.00 0.00 41.70 2.43
2446 2731 0.995024 ACTGGACTAATGCTTGGGCT 59.005 50.000 0.00 0.00 39.59 5.19
2451 2736 1.943340 GACTAATGCTTGGGCTACAGC 59.057 52.381 0.00 0.00 39.59 4.40
2468 2785 5.278022 GCTACAGCTTGTCCATATAAAAGGC 60.278 44.000 0.00 0.00 38.21 4.35
2505 2822 6.588719 TTTGGGACTAAAATCTGAACATGG 57.411 37.500 0.00 0.00 0.00 3.66
2506 2823 4.599041 TGGGACTAAAATCTGAACATGGG 58.401 43.478 0.00 0.00 0.00 4.00
2507 2824 4.044065 TGGGACTAAAATCTGAACATGGGT 59.956 41.667 0.00 0.00 0.00 4.51
2508 2825 5.251932 TGGGACTAAAATCTGAACATGGGTA 59.748 40.000 0.00 0.00 0.00 3.69
2509 2826 6.069088 TGGGACTAAAATCTGAACATGGGTAT 60.069 38.462 0.00 0.00 0.00 2.73
2510 2827 6.833933 GGGACTAAAATCTGAACATGGGTATT 59.166 38.462 0.00 0.00 0.00 1.89
2511 2828 7.013369 GGGACTAAAATCTGAACATGGGTATTC 59.987 40.741 0.00 0.00 0.00 1.75
2512 2829 7.013369 GGACTAAAATCTGAACATGGGTATTCC 59.987 40.741 0.00 0.00 0.00 3.01
2528 2845 5.358090 GGTATTCCCTCTAGTTGTAACTGC 58.642 45.833 7.50 0.00 40.07 4.40
2529 2846 3.587797 TTCCCTCTAGTTGTAACTGCG 57.412 47.619 7.50 0.00 40.07 5.18
2530 2847 2.799017 TCCCTCTAGTTGTAACTGCGA 58.201 47.619 7.50 3.64 40.07 5.10
2531 2848 2.753452 TCCCTCTAGTTGTAACTGCGAG 59.247 50.000 7.50 11.53 40.07 5.03
2532 2849 2.492484 CCCTCTAGTTGTAACTGCGAGT 59.508 50.000 17.11 0.00 40.07 4.18
2533 2850 3.502920 CCTCTAGTTGTAACTGCGAGTG 58.497 50.000 17.11 6.62 40.07 3.51
2534 2851 2.917971 CTCTAGTTGTAACTGCGAGTGC 59.082 50.000 7.50 0.00 40.07 4.40
2535 2852 1.993370 CTAGTTGTAACTGCGAGTGCC 59.007 52.381 7.50 0.00 40.07 5.01
2536 2853 0.105964 AGTTGTAACTGCGAGTGCCA 59.894 50.000 0.00 0.00 41.78 4.92
2537 2854 0.234884 GTTGTAACTGCGAGTGCCAC 59.765 55.000 0.00 0.00 41.78 5.01
2538 2855 0.179070 TTGTAACTGCGAGTGCCACA 60.179 50.000 0.00 0.00 41.78 4.17
2539 2856 0.034756 TGTAACTGCGAGTGCCACAT 59.965 50.000 0.00 0.00 41.78 3.21
2540 2857 0.721718 GTAACTGCGAGTGCCACATC 59.278 55.000 0.00 0.00 41.78 3.06
2541 2858 0.320050 TAACTGCGAGTGCCACATCA 59.680 50.000 0.00 0.00 41.78 3.07
2542 2859 0.321919 AACTGCGAGTGCCACATCAT 60.322 50.000 0.00 0.00 41.78 2.45
2543 2860 0.742281 ACTGCGAGTGCCACATCATC 60.742 55.000 0.00 0.00 41.78 2.92
2544 2861 0.461516 CTGCGAGTGCCACATCATCT 60.462 55.000 0.00 0.00 41.78 2.90
2545 2862 0.823460 TGCGAGTGCCACATCATCTA 59.177 50.000 0.00 0.00 41.78 1.98
2546 2863 1.212616 GCGAGTGCCACATCATCTAC 58.787 55.000 0.00 0.00 33.98 2.59
2547 2864 1.202463 GCGAGTGCCACATCATCTACT 60.202 52.381 0.00 0.00 33.98 2.57
2548 2865 2.739932 GCGAGTGCCACATCATCTACTT 60.740 50.000 0.00 0.00 33.98 2.24
2549 2866 3.490933 GCGAGTGCCACATCATCTACTTA 60.491 47.826 0.00 0.00 33.98 2.24
2550 2867 4.294232 CGAGTGCCACATCATCTACTTAG 58.706 47.826 0.00 0.00 0.00 2.18
2551 2868 4.202060 CGAGTGCCACATCATCTACTTAGT 60.202 45.833 0.00 0.00 0.00 2.24
2552 2869 5.269505 AGTGCCACATCATCTACTTAGTC 57.730 43.478 0.00 0.00 0.00 2.59
2553 2870 4.711846 AGTGCCACATCATCTACTTAGTCA 59.288 41.667 0.00 0.00 0.00 3.41
2554 2871 4.806247 GTGCCACATCATCTACTTAGTCAC 59.194 45.833 0.00 0.00 0.00 3.67
2555 2872 4.466015 TGCCACATCATCTACTTAGTCACA 59.534 41.667 0.00 0.00 0.00 3.58
2556 2873 4.806247 GCCACATCATCTACTTAGTCACAC 59.194 45.833 0.00 0.00 0.00 3.82
2557 2874 5.624509 GCCACATCATCTACTTAGTCACACA 60.625 44.000 0.00 0.00 0.00 3.72
2558 2875 5.807520 CCACATCATCTACTTAGTCACACAC 59.192 44.000 0.00 0.00 0.00 3.82
2559 2876 6.350528 CCACATCATCTACTTAGTCACACACT 60.351 42.308 0.00 0.00 39.41 3.55
2560 2877 6.529477 CACATCATCTACTTAGTCACACACTG 59.471 42.308 0.00 0.00 36.43 3.66
2561 2878 6.209589 ACATCATCTACTTAGTCACACACTGT 59.790 38.462 0.00 0.00 36.43 3.55
2562 2879 7.393515 ACATCATCTACTTAGTCACACACTGTA 59.606 37.037 0.00 0.00 36.43 2.74
2563 2880 7.939784 TCATCTACTTAGTCACACACTGTAT 57.060 36.000 0.00 0.00 36.43 2.29
2564 2881 8.349568 TCATCTACTTAGTCACACACTGTATT 57.650 34.615 0.00 0.00 36.43 1.89
2565 2882 8.803235 TCATCTACTTAGTCACACACTGTATTT 58.197 33.333 0.00 0.00 36.43 1.40
2566 2883 8.864024 CATCTACTTAGTCACACACTGTATTTG 58.136 37.037 0.00 0.00 36.43 2.32
2567 2884 7.375834 TCTACTTAGTCACACACTGTATTTGG 58.624 38.462 0.00 0.00 36.43 3.28
2568 2885 5.305585 ACTTAGTCACACACTGTATTTGGG 58.694 41.667 0.00 0.00 36.43 4.12
2569 2886 5.071250 ACTTAGTCACACACTGTATTTGGGA 59.929 40.000 0.00 0.00 36.43 4.37
2570 2887 3.740115 AGTCACACACTGTATTTGGGAC 58.260 45.455 9.47 9.47 42.93 4.46
2571 2888 3.391296 AGTCACACACTGTATTTGGGACT 59.609 43.478 12.81 12.81 46.89 3.85
2572 2889 4.890088 GTCACACACTGTATTTGGGACTA 58.110 43.478 10.00 0.00 40.03 2.59
2573 2890 5.302360 GTCACACACTGTATTTGGGACTAA 58.698 41.667 10.00 0.00 40.03 2.24
2574 2891 5.761234 GTCACACACTGTATTTGGGACTAAA 59.239 40.000 10.00 0.00 40.03 1.85
2575 2892 6.261381 GTCACACACTGTATTTGGGACTAAAA 59.739 38.462 10.00 0.00 40.03 1.52
2576 2893 7.001674 TCACACACTGTATTTGGGACTAAAAT 58.998 34.615 0.00 0.00 0.00 1.82
2577 2894 7.174253 TCACACACTGTATTTGGGACTAAAATC 59.826 37.037 0.00 0.00 0.00 2.17
2614 2931 3.502920 CCTCTAGTTGTAACTGCGAGTG 58.497 50.000 17.11 6.62 40.07 3.51
2695 3014 5.593183 AGTGTTTTTAGTTCTCTTAGCGC 57.407 39.130 0.00 0.00 0.00 5.92
2702 3021 1.476891 AGTTCTCTTAGCGCGATTGGA 59.523 47.619 12.10 4.32 0.00 3.53
2707 3026 1.933181 TCTTAGCGCGATTGGACAATG 59.067 47.619 12.10 0.00 0.00 2.82
2778 3106 3.189287 GTGATAAGGTTCACAACAGGCAG 59.811 47.826 0.00 0.00 44.38 4.85
2779 3107 3.181445 TGATAAGGTTCACAACAGGCAGT 60.181 43.478 0.00 0.00 0.00 4.40
2799 3127 4.010349 AGTGGCTATTTAACTGGCTTCAC 58.990 43.478 1.33 2.63 0.00 3.18
2806 3134 4.742438 TTTAACTGGCTTCACGTGATTC 57.258 40.909 20.80 13.60 0.00 2.52
2874 3212 1.032114 GTTAGGCACCACAGGGCATC 61.032 60.000 0.00 0.00 37.90 3.91
3025 3386 3.620488 TCATGATGGAACCTACTTTGGC 58.380 45.455 0.00 0.00 0.00 4.52
3053 3414 6.828785 AGGTTCAGAAATGTGTACAAGTTCTT 59.171 34.615 14.04 0.00 34.23 2.52
3559 3983 2.979676 CTCGCAGGCAAGGCAACA 60.980 61.111 0.00 0.00 41.41 3.33
3563 3987 1.300388 GCAGGCAAGGCAACAACAG 60.300 57.895 0.00 0.00 41.41 3.16
3572 4008 2.730094 CAACAACAGCCACAGCCC 59.270 61.111 0.00 0.00 41.25 5.19
3638 4074 1.467734 GCTCAGATGGTTCAACTGCAG 59.532 52.381 13.48 13.48 34.87 4.41
3764 4200 2.335712 GGTTGTGCAGCCTGCCTAC 61.336 63.158 15.29 11.92 44.23 3.18
3842 4278 3.434319 AGCGCCATTGCTGTTCCG 61.434 61.111 2.29 0.00 45.28 4.30
3866 4302 1.400846 GCAGAACATCACATCCAGCAG 59.599 52.381 0.00 0.00 0.00 4.24
3894 4330 1.675310 CAGCAGTTCCATTCGCCCA 60.675 57.895 0.00 0.00 0.00 5.36
3944 4380 3.054655 GCAAGGTTGGTCCCTATTCAGTA 60.055 47.826 0.00 0.00 36.75 2.74
3980 4416 4.100963 CAGGCCTACAACACTGTATATGGA 59.899 45.833 3.98 0.00 37.41 3.41
4001 4437 2.433446 CCTCCCAACAGTGCTGCT 59.567 61.111 0.00 0.00 0.00 4.24
4043 4479 4.052229 CAAGCACAGCAGGCCAGC 62.052 66.667 13.11 13.11 0.00 4.85
4077 4513 1.580658 TCCATCATCTAGGACCCCAGT 59.419 52.381 0.00 0.00 0.00 4.00
4229 4665 1.578423 GCTGAGCTCTGTTGGCAAC 59.422 57.895 23.12 23.12 0.00 4.17
4279 4715 1.174712 AAGCCGCATGTGAAGCACTT 61.175 50.000 8.11 0.65 35.11 3.16
4292 4728 0.982704 AGCACTTCATCTGCTCCTGT 59.017 50.000 0.00 0.00 41.27 4.00
4313 4749 6.404844 CCTGTGACTTTCTCGTGTGATATACT 60.405 42.308 0.00 0.00 0.00 2.12
4328 4764 5.629849 GTGATATACTGTGTGGCGATCTTAC 59.370 44.000 0.00 0.00 0.00 2.34
4336 4772 2.233676 TGTGGCGATCTTACTGTGATGT 59.766 45.455 0.00 0.00 0.00 3.06
4360 4796 2.386661 CTCGCTTTTGAGCTTCCCTA 57.613 50.000 0.00 0.00 0.00 3.53
4361 4797 2.699954 CTCGCTTTTGAGCTTCCCTAA 58.300 47.619 0.00 0.00 0.00 2.69
4500 4938 2.198827 TGATTGTCGGCATTTGTCCT 57.801 45.000 0.00 0.00 0.00 3.85
4638 5077 1.203287 CTCATCTGTTCACCTGCTCGA 59.797 52.381 0.00 0.00 0.00 4.04
4665 5107 1.372872 GCATTGCCGGGTTTGTGTC 60.373 57.895 2.18 0.00 0.00 3.67
4695 5137 5.069383 TCTGTTGGCAGTAACTGTTAGTACA 59.931 40.000 7.53 7.76 43.05 2.90
4696 5138 5.860611 TGTTGGCAGTAACTGTTAGTACAT 58.139 37.500 7.53 0.00 33.43 2.29
4697 5139 6.995364 TGTTGGCAGTAACTGTTAGTACATA 58.005 36.000 7.53 1.85 33.43 2.29
4715 5157 8.131455 AGTACATATGCTGTGAGAAATTTACG 57.869 34.615 1.58 0.00 38.92 3.18
4793 5236 7.037438 ACAAGATCCATATGCATTTGTCAAAC 58.963 34.615 14.86 3.63 0.00 2.93
4826 5269 7.861630 GTCATAAGACAAAAAGTTGCTACTGA 58.138 34.615 0.36 0.00 44.34 3.41
4843 5286 5.176590 GCTACTGAACTGAACTGAACTGAAG 59.823 44.000 0.00 0.00 0.00 3.02
4846 5289 3.454447 TGAACTGAACTGAACTGAAGGGA 59.546 43.478 0.00 0.00 0.00 4.20
4877 5320 3.511477 TCTGGAGAACTAGGTCTGCTTT 58.489 45.455 27.12 0.00 36.94 3.51
4883 5337 5.337975 GGAGAACTAGGTCTGCTTTCATTCT 60.338 44.000 21.10 3.00 33.47 2.40
4900 5361 5.944135 TCATTCTAATCAATGAGGATGCCA 58.056 37.500 0.00 0.00 37.77 4.92
4972 5434 4.216472 GGGACAGAATTTCCAGAAACAGTC 59.784 45.833 0.00 2.23 34.45 3.51
4984 5446 2.887152 AGAAACAGTCCATGTCAAAGGC 59.113 45.455 0.00 0.00 43.00 4.35
5046 5508 3.813166 TGTTCATTTCTCGAGTCCAAACC 59.187 43.478 13.13 0.00 0.00 3.27
5065 5527 6.212589 CCAAACCCCTAACCAATTTAAGATGT 59.787 38.462 0.00 0.00 0.00 3.06
5070 5532 6.127451 CCCCTAACCAATTTAAGATGTTCCAC 60.127 42.308 0.00 0.00 0.00 4.02
5077 5539 5.886960 ATTTAAGATGTTCCACTGTCTGC 57.113 39.130 0.00 0.00 0.00 4.26
5091 5553 4.572389 CACTGTCTGCTCCCATAATAACAC 59.428 45.833 0.00 0.00 0.00 3.32
5092 5554 4.225042 ACTGTCTGCTCCCATAATAACACA 59.775 41.667 0.00 0.00 0.00 3.72
5093 5555 5.172687 TGTCTGCTCCCATAATAACACAA 57.827 39.130 0.00 0.00 0.00 3.33
5105 5567 8.405531 CCCATAATAACACAATCAGGTTAACAG 58.594 37.037 8.10 0.00 33.60 3.16
5112 5574 4.214119 CACAATCAGGTTAACAGGTGACAG 59.786 45.833 8.10 6.03 0.00 3.51
5119 5581 4.407945 AGGTTAACAGGTGACAGTGTACTT 59.592 41.667 8.10 0.00 0.00 2.24
5123 5585 7.255590 GGTTAACAGGTGACAGTGTACTTACTA 60.256 40.741 8.10 0.00 0.00 1.82
5132 5598 6.713450 TGACAGTGTACTTACTATCTGACACA 59.287 38.462 0.00 0.00 39.67 3.72
5177 5643 3.696051 GCAACAGCCATAAATCCAGAGAA 59.304 43.478 0.00 0.00 0.00 2.87
5202 5668 9.912634 AACAACCACAGAATGAATATTAAACTG 57.087 29.630 8.12 8.12 39.69 3.16
5209 5675 9.965902 ACAGAATGAATATTAAACTGAAGGTCT 57.034 29.630 13.80 0.00 39.69 3.85
5238 5704 4.384208 GCATACACAACCCAGGTCTAGAAT 60.384 45.833 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.737427 CGTGTGGGATATCATCTAGTTATTATC 57.263 37.037 4.83 0.00 0.00 1.75
22 23 7.015292 ACAACGTGTGGGATATCATCTAGTTAT 59.985 37.037 4.83 0.00 0.00 1.89
23 24 6.322969 ACAACGTGTGGGATATCATCTAGTTA 59.677 38.462 4.83 0.00 0.00 2.24
27 28 5.356426 CAACAACGTGTGGGATATCATCTA 58.644 41.667 4.83 0.00 0.00 1.98
36 37 2.897846 CCGCAACAACGTGTGGGA 60.898 61.111 11.34 0.00 44.09 4.37
38 39 3.959975 CCCCGCAACAACGTGTGG 61.960 66.667 0.00 0.00 46.82 4.17
40 41 0.035820 ATATCCCCGCAACAACGTGT 60.036 50.000 0.00 0.00 0.00 4.49
289 290 4.127566 ACAACATGCACAAGAAAAGCTT 57.872 36.364 0.00 0.00 37.29 3.74
290 291 3.806625 ACAACATGCACAAGAAAAGCT 57.193 38.095 0.00 0.00 0.00 3.74
299 300 4.094146 CCACATTATCGTACAACATGCACA 59.906 41.667 0.00 0.00 0.00 4.57
333 334 7.976734 AGTCCTCACTAATTATTTCTCTCAACG 59.023 37.037 0.00 0.00 0.00 4.10
375 376 2.764572 CCGGGTCCTGTGTACTATCTTT 59.235 50.000 0.00 0.00 0.00 2.52
379 380 1.287146 AGACCGGGTCCTGTGTACTAT 59.713 52.381 23.21 0.00 32.18 2.12
380 381 0.700564 AGACCGGGTCCTGTGTACTA 59.299 55.000 23.21 0.00 32.18 1.82
381 382 0.898789 CAGACCGGGTCCTGTGTACT 60.899 60.000 23.21 0.00 32.18 2.73
382 383 1.183676 ACAGACCGGGTCCTGTGTAC 61.184 60.000 23.21 0.00 32.18 2.90
383 384 0.405198 TACAGACCGGGTCCTGTGTA 59.595 55.000 27.72 23.55 32.18 2.90
384 385 0.898789 CTACAGACCGGGTCCTGTGT 60.899 60.000 27.72 24.32 32.18 3.72
385 386 0.611062 TCTACAGACCGGGTCCTGTG 60.611 60.000 27.72 21.08 32.18 3.66
386 387 0.335361 ATCTACAGACCGGGTCCTGT 59.665 55.000 23.21 24.39 32.18 4.00
387 388 2.359981 TATCTACAGACCGGGTCCTG 57.640 55.000 23.21 20.61 32.18 3.86
388 389 2.445905 TGATATCTACAGACCGGGTCCT 59.554 50.000 23.21 11.48 32.18 3.85
389 390 2.872732 TGATATCTACAGACCGGGTCC 58.127 52.381 23.21 6.06 32.18 4.46
390 391 4.079970 TGATGATATCTACAGACCGGGTC 58.920 47.826 19.61 19.61 0.00 4.46
391 392 4.114015 TGATGATATCTACAGACCGGGT 57.886 45.455 6.32 0.00 0.00 5.28
392 393 4.524714 AGTTGATGATATCTACAGACCGGG 59.475 45.833 6.32 0.00 37.46 5.73
393 394 5.713792 AGTTGATGATATCTACAGACCGG 57.286 43.478 0.00 0.00 37.46 5.28
394 395 6.739112 TCAAGTTGATGATATCTACAGACCG 58.261 40.000 0.08 0.00 37.46 4.79
395 396 7.540400 CGATCAAGTTGATGATATCTACAGACC 59.460 40.741 22.93 2.64 40.08 3.85
396 397 7.540400 CCGATCAAGTTGATGATATCTACAGAC 59.460 40.741 22.93 3.05 40.08 3.51
397 398 7.231519 ACCGATCAAGTTGATGATATCTACAGA 59.768 37.037 22.93 4.46 40.08 3.41
398 399 7.374272 ACCGATCAAGTTGATGATATCTACAG 58.626 38.462 22.93 1.40 40.08 2.74
399 400 7.014230 TGACCGATCAAGTTGATGATATCTACA 59.986 37.037 22.93 8.92 40.08 2.74
400 401 7.371159 TGACCGATCAAGTTGATGATATCTAC 58.629 38.462 22.93 5.11 40.08 2.59
401 402 7.524717 TGACCGATCAAGTTGATGATATCTA 57.475 36.000 22.93 1.10 40.08 1.98
402 403 6.410942 TGACCGATCAAGTTGATGATATCT 57.589 37.500 22.93 0.00 40.08 1.98
403 404 7.482654 TTTGACCGATCAAGTTGATGATATC 57.517 36.000 22.93 14.06 45.54 1.63
404 405 7.864108 TTTTGACCGATCAAGTTGATGATAT 57.136 32.000 22.93 5.73 45.54 1.63
405 406 7.864108 ATTTTGACCGATCAAGTTGATGATA 57.136 32.000 22.93 2.44 45.54 2.15
406 407 6.764308 ATTTTGACCGATCAAGTTGATGAT 57.236 33.333 22.93 7.85 45.54 2.45
407 408 6.878923 AGTATTTTGACCGATCAAGTTGATGA 59.121 34.615 22.93 0.00 45.54 2.92
408 409 7.076842 AGTATTTTGACCGATCAAGTTGATG 57.923 36.000 22.93 11.83 45.54 3.07
409 410 8.041323 AGTAGTATTTTGACCGATCAAGTTGAT 58.959 33.333 18.31 18.31 45.54 2.57
410 411 7.383687 AGTAGTATTTTGACCGATCAAGTTGA 58.616 34.615 8.27 8.27 45.54 3.18
411 412 7.201530 GGAGTAGTATTTTGACCGATCAAGTTG 60.202 40.741 0.00 0.00 45.54 3.16
412 413 6.817140 GGAGTAGTATTTTGACCGATCAAGTT 59.183 38.462 0.00 0.00 45.54 2.66
413 414 6.070995 TGGAGTAGTATTTTGACCGATCAAGT 60.071 38.462 0.00 0.00 45.54 3.16
414 415 6.338146 TGGAGTAGTATTTTGACCGATCAAG 58.662 40.000 0.00 0.00 45.54 3.02
415 416 6.288941 TGGAGTAGTATTTTGACCGATCAA 57.711 37.500 0.00 0.00 43.28 2.57
416 417 5.925506 TGGAGTAGTATTTTGACCGATCA 57.074 39.130 0.00 0.00 0.00 2.92
417 418 5.231568 CGTTGGAGTAGTATTTTGACCGATC 59.768 44.000 0.00 0.00 0.00 3.69
418 419 5.107133 CGTTGGAGTAGTATTTTGACCGAT 58.893 41.667 0.00 0.00 0.00 4.18
419 420 4.487948 CGTTGGAGTAGTATTTTGACCGA 58.512 43.478 0.00 0.00 0.00 4.69
420 421 3.615496 CCGTTGGAGTAGTATTTTGACCG 59.385 47.826 0.00 0.00 0.00 4.79
421 422 3.373130 GCCGTTGGAGTAGTATTTTGACC 59.627 47.826 0.00 0.00 0.00 4.02
422 423 3.373130 GGCCGTTGGAGTAGTATTTTGAC 59.627 47.826 0.00 0.00 0.00 3.18
423 424 3.602483 GGCCGTTGGAGTAGTATTTTGA 58.398 45.455 0.00 0.00 0.00 2.69
424 425 2.350498 CGGCCGTTGGAGTAGTATTTTG 59.650 50.000 19.50 0.00 0.00 2.44
425 426 2.234414 TCGGCCGTTGGAGTAGTATTTT 59.766 45.455 27.15 0.00 0.00 1.82
426 427 1.826720 TCGGCCGTTGGAGTAGTATTT 59.173 47.619 27.15 0.00 0.00 1.40
427 428 1.477553 TCGGCCGTTGGAGTAGTATT 58.522 50.000 27.15 0.00 0.00 1.89
428 429 1.135721 GTTCGGCCGTTGGAGTAGTAT 59.864 52.381 27.15 0.00 0.00 2.12
429 430 0.527565 GTTCGGCCGTTGGAGTAGTA 59.472 55.000 27.15 0.00 0.00 1.82
430 431 1.291272 GTTCGGCCGTTGGAGTAGT 59.709 57.895 27.15 0.00 0.00 2.73
431 432 1.447314 GGTTCGGCCGTTGGAGTAG 60.447 63.158 27.15 0.00 0.00 2.57
432 433 2.658422 GGTTCGGCCGTTGGAGTA 59.342 61.111 27.15 0.00 0.00 2.59
433 434 4.324991 GGGTTCGGCCGTTGGAGT 62.325 66.667 27.15 0.00 38.44 3.85
436 437 4.733542 ATGGGGTTCGGCCGTTGG 62.734 66.667 27.15 0.00 38.44 3.77
437 438 3.131478 GATGGGGTTCGGCCGTTG 61.131 66.667 27.15 0.00 38.44 4.10
438 439 3.642503 TGATGGGGTTCGGCCGTT 61.643 61.111 27.15 2.13 38.44 4.44
439 440 4.404098 GTGATGGGGTTCGGCCGT 62.404 66.667 27.15 2.66 38.44 5.68
441 442 1.917336 TTAGGTGATGGGGTTCGGCC 61.917 60.000 0.00 0.00 0.00 6.13
442 443 0.034863 TTTAGGTGATGGGGTTCGGC 60.035 55.000 0.00 0.00 0.00 5.54
443 444 2.500392 TTTTAGGTGATGGGGTTCGG 57.500 50.000 0.00 0.00 0.00 4.30
444 445 2.752903 CCTTTTTAGGTGATGGGGTTCG 59.247 50.000 0.00 0.00 0.00 3.95
445 446 2.496070 GCCTTTTTAGGTGATGGGGTTC 59.504 50.000 0.00 0.00 0.00 3.62
446 447 2.158234 TGCCTTTTTAGGTGATGGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
447 448 1.431243 TGCCTTTTTAGGTGATGGGGT 59.569 47.619 0.00 0.00 0.00 4.95
448 449 2.230130 TGCCTTTTTAGGTGATGGGG 57.770 50.000 0.00 0.00 0.00 4.96
449 450 3.613910 CGTTTGCCTTTTTAGGTGATGGG 60.614 47.826 0.00 0.00 0.00 4.00
450 451 3.005367 ACGTTTGCCTTTTTAGGTGATGG 59.995 43.478 0.00 0.00 0.00 3.51
451 452 3.980775 CACGTTTGCCTTTTTAGGTGATG 59.019 43.478 0.00 0.00 0.00 3.07
452 453 3.886505 TCACGTTTGCCTTTTTAGGTGAT 59.113 39.130 0.00 0.00 32.43 3.06
453 454 3.065648 GTCACGTTTGCCTTTTTAGGTGA 59.934 43.478 0.00 0.00 34.26 4.02
454 455 3.368495 GTCACGTTTGCCTTTTTAGGTG 58.632 45.455 0.00 0.00 0.00 4.00
455 456 2.359848 GGTCACGTTTGCCTTTTTAGGT 59.640 45.455 0.00 0.00 0.00 3.08
456 457 2.621526 AGGTCACGTTTGCCTTTTTAGG 59.378 45.455 0.00 0.00 0.00 2.69
457 458 3.606153 CGAGGTCACGTTTGCCTTTTTAG 60.606 47.826 4.13 0.00 31.62 1.85
458 459 2.288458 CGAGGTCACGTTTGCCTTTTTA 59.712 45.455 4.13 0.00 31.62 1.52
459 460 1.064952 CGAGGTCACGTTTGCCTTTTT 59.935 47.619 4.13 0.00 31.62 1.94
460 461 0.661020 CGAGGTCACGTTTGCCTTTT 59.339 50.000 4.13 0.00 31.62 2.27
461 462 0.179067 TCGAGGTCACGTTTGCCTTT 60.179 50.000 4.13 0.00 31.62 3.11
462 463 0.878961 GTCGAGGTCACGTTTGCCTT 60.879 55.000 4.13 0.00 31.62 4.35
463 464 1.300697 GTCGAGGTCACGTTTGCCT 60.301 57.895 2.34 2.34 33.45 4.75
464 465 1.155424 TTGTCGAGGTCACGTTTGCC 61.155 55.000 0.00 0.00 34.70 4.52
465 466 0.865769 ATTGTCGAGGTCACGTTTGC 59.134 50.000 0.00 0.00 34.70 3.68
466 467 1.398451 GCATTGTCGAGGTCACGTTTG 60.398 52.381 0.00 0.00 34.70 2.93
467 468 0.865769 GCATTGTCGAGGTCACGTTT 59.134 50.000 0.00 0.00 34.70 3.60
468 469 1.282248 CGCATTGTCGAGGTCACGTT 61.282 55.000 0.00 0.00 34.70 3.99
469 470 1.733041 CGCATTGTCGAGGTCACGT 60.733 57.895 0.00 0.00 34.70 4.49
470 471 3.071459 GCGCATTGTCGAGGTCACG 62.071 63.158 0.30 0.00 0.00 4.35
471 472 2.740714 GGCGCATTGTCGAGGTCAC 61.741 63.158 10.83 0.00 0.00 3.67
472 473 2.434185 GGCGCATTGTCGAGGTCA 60.434 61.111 10.83 0.00 0.00 4.02
473 474 1.815421 ATGGCGCATTGTCGAGGTC 60.815 57.895 10.83 0.00 0.00 3.85
474 475 2.108514 CATGGCGCATTGTCGAGGT 61.109 57.895 10.83 0.00 0.00 3.85
475 476 2.711311 CATGGCGCATTGTCGAGG 59.289 61.111 10.83 0.00 0.00 4.63
476 477 1.815003 TCCATGGCGCATTGTCGAG 60.815 57.895 10.83 0.00 0.00 4.04
477 478 2.106074 GTCCATGGCGCATTGTCGA 61.106 57.895 10.83 0.00 0.00 4.20
478 479 2.404789 GTCCATGGCGCATTGTCG 59.595 61.111 10.83 0.00 0.00 4.35
479 480 1.750399 AGGTCCATGGCGCATTGTC 60.750 57.895 10.83 1.53 0.00 3.18
480 481 2.048023 CAGGTCCATGGCGCATTGT 61.048 57.895 10.83 0.00 0.00 2.71
481 482 2.802792 CAGGTCCATGGCGCATTG 59.197 61.111 10.83 5.69 0.00 2.82
482 483 3.142838 GCAGGTCCATGGCGCATT 61.143 61.111 10.83 0.00 0.00 3.56
487 488 4.195334 ATCGGGCAGGTCCATGGC 62.195 66.667 6.96 1.78 44.61 4.40
488 489 2.203252 CATCGGGCAGGTCCATGG 60.203 66.667 4.97 4.97 36.21 3.66
489 490 1.227764 CTCATCGGGCAGGTCCATG 60.228 63.158 0.00 0.00 36.21 3.66
490 491 0.982852 TTCTCATCGGGCAGGTCCAT 60.983 55.000 0.00 0.00 36.21 3.41
491 492 1.612146 TTCTCATCGGGCAGGTCCA 60.612 57.895 0.00 0.00 36.21 4.02
492 493 1.144936 CTTCTCATCGGGCAGGTCC 59.855 63.158 0.00 0.00 0.00 4.46
493 494 1.522580 GCTTCTCATCGGGCAGGTC 60.523 63.158 0.00 0.00 0.00 3.85
494 495 1.841302 TTGCTTCTCATCGGGCAGGT 61.841 55.000 0.00 0.00 36.06 4.00
495 496 1.078214 TTGCTTCTCATCGGGCAGG 60.078 57.895 0.00 0.00 36.06 4.85
496 497 1.712977 GCTTGCTTCTCATCGGGCAG 61.713 60.000 0.00 0.00 36.06 4.85
497 498 1.746615 GCTTGCTTCTCATCGGGCA 60.747 57.895 0.00 0.00 0.00 5.36
498 499 1.308069 TTGCTTGCTTCTCATCGGGC 61.308 55.000 0.00 0.00 0.00 6.13
499 500 1.065102 CATTGCTTGCTTCTCATCGGG 59.935 52.381 0.00 0.00 0.00 5.14
500 501 2.470196 CATTGCTTGCTTCTCATCGG 57.530 50.000 0.00 0.00 0.00 4.18
590 621 3.768185 ATGCACGGCTACGGCTACG 62.768 63.158 0.00 0.00 46.48 3.51
591 622 1.949631 GATGCACGGCTACGGCTAC 60.950 63.158 0.00 0.00 46.48 3.58
592 623 2.415843 GATGCACGGCTACGGCTA 59.584 61.111 0.00 0.00 46.48 3.93
593 624 3.770040 TGATGCACGGCTACGGCT 61.770 61.111 0.00 0.00 46.48 5.52
594 625 3.564027 GTGATGCACGGCTACGGC 61.564 66.667 0.00 0.00 46.48 5.68
597 628 2.890474 CCGGTGATGCACGGCTAC 60.890 66.667 0.07 0.00 43.96 3.58
684 771 0.400213 TTCTGGGCTGGTTCGTTCAT 59.600 50.000 0.00 0.00 0.00 2.57
685 772 0.534203 GTTCTGGGCTGGTTCGTTCA 60.534 55.000 0.00 0.00 0.00 3.18
686 773 1.235281 GGTTCTGGGCTGGTTCGTTC 61.235 60.000 0.00 0.00 0.00 3.95
688 775 1.990160 TTGGTTCTGGGCTGGTTCGT 61.990 55.000 0.00 0.00 0.00 3.85
690 777 1.527433 GCTTGGTTCTGGGCTGGTTC 61.527 60.000 0.00 0.00 0.00 3.62
691 778 1.531602 GCTTGGTTCTGGGCTGGTT 60.532 57.895 0.00 0.00 0.00 3.67
692 779 2.116125 GCTTGGTTCTGGGCTGGT 59.884 61.111 0.00 0.00 0.00 4.00
693 780 3.058160 CGCTTGGTTCTGGGCTGG 61.058 66.667 0.00 0.00 0.00 4.85
697 784 4.740822 CCCCCGCTTGGTTCTGGG 62.741 72.222 0.00 0.00 41.56 4.45
737 824 2.914756 TATAGGCGACCGGCACCAGA 62.915 60.000 17.84 0.00 46.16 3.86
738 825 1.816863 ATATAGGCGACCGGCACCAG 61.817 60.000 17.84 0.00 46.16 4.00
739 826 1.812686 GATATAGGCGACCGGCACCA 61.813 60.000 17.84 3.40 46.16 4.17
740 827 1.080025 GATATAGGCGACCGGCACC 60.080 63.158 17.84 0.00 46.16 5.01
741 828 1.135460 GTAGATATAGGCGACCGGCAC 60.135 57.143 17.84 0.00 46.16 5.01
742 829 1.171308 GTAGATATAGGCGACCGGCA 58.829 55.000 17.84 4.87 46.16 5.69
743 830 0.455005 GGTAGATATAGGCGACCGGC 59.545 60.000 0.00 7.94 42.51 6.13
744 831 1.101331 GGGTAGATATAGGCGACCGG 58.899 60.000 0.00 0.00 32.56 5.28
745 832 0.731417 CGGGTAGATATAGGCGACCG 59.269 60.000 0.00 0.00 32.56 4.79
746 833 0.455005 GCGGGTAGATATAGGCGACC 59.545 60.000 0.00 0.00 0.00 4.79
747 834 0.098376 CGCGGGTAGATATAGGCGAC 59.902 60.000 0.00 0.00 45.83 5.19
748 835 1.028330 CCGCGGGTAGATATAGGCGA 61.028 60.000 20.10 0.00 45.83 5.54
851 938 2.149521 AAAAGGGAGAAAGGGGAGGA 57.850 50.000 0.00 0.00 0.00 3.71
957 1064 1.445716 CTTCTCCGCGTATCTCCGGT 61.446 60.000 4.92 0.00 44.63 5.28
1092 1199 2.726351 GGAGAAGGGGCTGACCTCG 61.726 68.421 0.00 0.00 43.67 4.63
1102 1209 1.063183 GATGGATGGAGGGAGAAGGG 58.937 60.000 0.00 0.00 0.00 3.95
1150 1264 6.399743 GCTCCTAAGCTAAGAAAACAGTAGT 58.600 40.000 0.00 0.00 45.55 2.73
1174 1288 2.722201 GCAGTCCCGGGACCTACTG 61.722 68.421 43.37 35.08 45.59 2.74
1211 1388 4.335647 AGGCAGGCCACGAACCAG 62.336 66.667 13.63 0.00 38.92 4.00
1212 1389 4.329545 GAGGCAGGCCACGAACCA 62.330 66.667 13.63 0.00 38.92 3.67
1244 1421 4.430765 ACATGTCGGCCGTCGTCC 62.431 66.667 27.15 9.64 40.32 4.79
1292 1472 0.962356 AGAAATGGCAAGCAGGGTCG 60.962 55.000 0.00 0.00 0.00 4.79
1297 1477 1.133790 GCACCTAGAAATGGCAAGCAG 59.866 52.381 0.00 0.00 0.00 4.24
1317 1497 5.185454 TGTAGCATATTTGAAGGTCCTGTG 58.815 41.667 0.00 0.00 0.00 3.66
1318 1498 5.045578 ACTGTAGCATATTTGAAGGTCCTGT 60.046 40.000 0.00 0.00 0.00 4.00
1324 1504 9.900710 CTAGTAGTACTGTAGCATATTTGAAGG 57.099 37.037 13.29 0.00 0.00 3.46
1340 1520 2.361438 GGCGGTGCAATCTAGTAGTACT 59.639 50.000 8.14 8.14 0.00 2.73
1341 1521 2.545322 GGGCGGTGCAATCTAGTAGTAC 60.545 54.545 0.00 0.00 0.00 2.73
1342 1522 1.684983 GGGCGGTGCAATCTAGTAGTA 59.315 52.381 0.00 0.00 0.00 1.82
1343 1523 0.464452 GGGCGGTGCAATCTAGTAGT 59.536 55.000 0.00 0.00 0.00 2.73
1344 1524 0.249911 GGGGCGGTGCAATCTAGTAG 60.250 60.000 0.00 0.00 0.00 2.57
1345 1525 1.827394 GGGGCGGTGCAATCTAGTA 59.173 57.895 0.00 0.00 0.00 1.82
1346 1526 2.590092 GGGGCGGTGCAATCTAGT 59.410 61.111 0.00 0.00 0.00 2.57
1359 1542 4.899239 CAGATCGGTCAGCGGGGC 62.899 72.222 0.00 0.00 0.00 5.80
1363 1546 4.899239 GGCCCAGATCGGTCAGCG 62.899 72.222 0.00 0.00 0.00 5.18
1371 1557 1.406903 CCAAATCCTTGGCCCAGATC 58.593 55.000 5.14 0.00 45.67 2.75
1399 1585 1.772182 AAAGAAGCGCGGATATCTCG 58.228 50.000 8.83 7.96 0.00 4.04
1405 1591 1.359459 GACGGAAAAGAAGCGCGGAT 61.359 55.000 8.83 0.00 0.00 4.18
1409 1595 2.474712 CCGACGGAAAAGAAGCGC 59.525 61.111 8.64 0.00 0.00 5.92
1410 1596 2.474712 GCCGACGGAAAAGAAGCG 59.525 61.111 20.50 0.00 0.00 4.68
1416 1602 2.712325 TAACGCTGGCCGACGGAAAA 62.712 55.000 20.50 0.15 41.02 2.29
1442 1628 6.084277 CCGTGATGAATGATGCAGAAATATG 58.916 40.000 0.00 0.00 0.00 1.78
1443 1629 5.766670 ACCGTGATGAATGATGCAGAAATAT 59.233 36.000 0.00 0.00 0.00 1.28
1445 1631 3.949754 ACCGTGATGAATGATGCAGAAAT 59.050 39.130 0.00 0.00 0.00 2.17
1454 1640 1.381522 CATGGCACCGTGATGAATGA 58.618 50.000 1.65 0.00 35.09 2.57
1460 1646 2.124570 GAGCCATGGCACCGTGAT 60.125 61.111 37.18 16.13 44.88 3.06
1481 1667 1.279840 GCAAGCGGTTGACAGACAC 59.720 57.895 30.14 7.30 35.46 3.67
1508 1694 1.638529 AGAACAGGTCTGTCTCCCAG 58.361 55.000 3.93 0.00 44.13 4.45
1509 1695 2.808919 CTAGAACAGGTCTGTCTCCCA 58.191 52.381 0.00 0.00 44.13 4.37
1510 1696 1.478916 GCTAGAACAGGTCTGTCTCCC 59.521 57.143 0.00 0.00 44.13 4.30
1511 1697 2.165437 CAGCTAGAACAGGTCTGTCTCC 59.835 54.545 0.00 0.00 44.13 3.71
1512 1698 2.416701 GCAGCTAGAACAGGTCTGTCTC 60.417 54.545 0.00 5.01 44.13 3.36
1540 1745 2.274948 TACTAGAGCCGCGGGAGGAA 62.275 60.000 29.38 0.00 0.00 3.36
1545 1750 2.049063 GCATACTAGAGCCGCGGG 60.049 66.667 29.38 12.50 0.00 6.13
1563 1768 6.161855 TGTATAACAGTAATGAGGCCAGAG 57.838 41.667 5.01 0.00 0.00 3.35
1565 1808 8.150945 ACTATTGTATAACAGTAATGAGGCCAG 58.849 37.037 5.01 0.00 0.00 4.85
1588 1831 7.500227 ACGCAACTAGGTTATGATGTACTACTA 59.500 37.037 0.00 0.00 0.00 1.82
1589 1832 6.320672 ACGCAACTAGGTTATGATGTACTACT 59.679 38.462 0.00 0.00 0.00 2.57
1590 1833 6.501781 ACGCAACTAGGTTATGATGTACTAC 58.498 40.000 0.00 0.00 0.00 2.73
1591 1834 6.704289 ACGCAACTAGGTTATGATGTACTA 57.296 37.500 0.00 0.00 0.00 1.82
1592 1835 5.593679 ACGCAACTAGGTTATGATGTACT 57.406 39.130 0.00 0.00 0.00 2.73
1593 1836 5.501897 GCAACGCAACTAGGTTATGATGTAC 60.502 44.000 0.00 0.00 0.00 2.90
1594 1837 4.569162 GCAACGCAACTAGGTTATGATGTA 59.431 41.667 0.00 0.00 0.00 2.29
1595 1838 3.374058 GCAACGCAACTAGGTTATGATGT 59.626 43.478 0.00 0.00 0.00 3.06
1596 1839 3.623060 AGCAACGCAACTAGGTTATGATG 59.377 43.478 0.00 0.00 0.00 3.07
1597 1840 3.873910 AGCAACGCAACTAGGTTATGAT 58.126 40.909 0.00 0.00 0.00 2.45
1598 1841 3.328382 AGCAACGCAACTAGGTTATGA 57.672 42.857 0.00 0.00 0.00 2.15
1599 1842 5.050490 AGATAGCAACGCAACTAGGTTATG 58.950 41.667 0.00 0.00 0.00 1.90
1600 1843 5.277857 AGATAGCAACGCAACTAGGTTAT 57.722 39.130 0.00 0.00 0.00 1.89
1601 1844 4.730949 AGATAGCAACGCAACTAGGTTA 57.269 40.909 0.00 0.00 0.00 2.85
1602 1845 3.611766 AGATAGCAACGCAACTAGGTT 57.388 42.857 0.00 0.00 0.00 3.50
1605 1848 5.157781 GGATCTAGATAGCAACGCAACTAG 58.842 45.833 4.89 0.00 33.24 2.57
1615 1858 1.618837 GCCCGTTGGATCTAGATAGCA 59.381 52.381 4.89 0.00 0.00 3.49
1631 1874 4.606961 ACAAATTATTTTAGCGATGCCCG 58.393 39.130 0.00 0.00 42.21 6.13
1633 1876 5.276820 GCCAACAAATTATTTTAGCGATGCC 60.277 40.000 0.00 0.00 0.00 4.40
1634 1877 5.519927 AGCCAACAAATTATTTTAGCGATGC 59.480 36.000 0.00 0.00 0.00 3.91
1656 1899 0.391793 GTAACCCTCACAGGCAGAGC 60.392 60.000 0.00 0.00 32.73 4.09
1657 1900 0.250513 GGTAACCCTCACAGGCAGAG 59.749 60.000 0.00 0.00 32.73 3.35
1658 1901 0.472925 TGGTAACCCTCACAGGCAGA 60.473 55.000 0.00 0.00 32.73 4.26
1663 1906 6.463049 CCAGTAATAGATGGTAACCCTCACAG 60.463 46.154 0.00 0.00 0.00 3.66
1675 1918 7.013655 CAGGTGAAATTTCCCAGTAATAGATGG 59.986 40.741 20.90 0.00 36.27 3.51
1676 1919 7.557719 ACAGGTGAAATTTCCCAGTAATAGATG 59.442 37.037 20.90 12.63 0.00 2.90
1678 1921 7.027874 ACAGGTGAAATTTCCCAGTAATAGA 57.972 36.000 20.90 0.00 0.00 1.98
1681 1924 5.838521 ACAACAGGTGAAATTTCCCAGTAAT 59.161 36.000 20.90 11.73 0.00 1.89
1693 1938 2.722094 AGCTGACAACAACAGGTGAAA 58.278 42.857 0.00 0.00 43.03 2.69
1703 1973 5.222079 TGATAAGGTAACAGCTGACAACA 57.778 39.130 23.35 4.98 41.41 3.33
1737 2007 7.013220 TCCTGAGCTACTATCCAATTATCACT 58.987 38.462 0.00 0.00 0.00 3.41
1746 2016 3.576118 GCTGAATCCTGAGCTACTATCCA 59.424 47.826 0.00 0.00 32.12 3.41
1768 2038 4.093998 CCTAGTTGCACAGCTGACAAATAG 59.906 45.833 31.55 31.55 40.07 1.73
1790 2061 2.093235 AGCACCATTCAAGCTACTCTCC 60.093 50.000 0.00 0.00 36.73 3.71
1807 2078 6.214399 ACAAATCTACGGCTAGTATAAGCAC 58.786 40.000 0.00 0.00 44.64 4.40
1808 2079 6.401047 ACAAATCTACGGCTAGTATAAGCA 57.599 37.500 0.00 0.00 44.64 3.91
1809 2080 5.568296 CGACAAATCTACGGCTAGTATAAGC 59.432 44.000 0.00 0.00 41.99 3.09
1810 2081 6.796072 GTCGACAAATCTACGGCTAGTATAAG 59.204 42.308 11.55 0.00 34.34 1.73
1811 2082 6.293626 GGTCGACAAATCTACGGCTAGTATAA 60.294 42.308 18.91 0.00 34.34 0.98
1812 2083 5.180117 GGTCGACAAATCTACGGCTAGTATA 59.820 44.000 18.91 0.00 34.34 1.47
1813 2084 4.023365 GGTCGACAAATCTACGGCTAGTAT 60.023 45.833 18.91 0.00 34.34 2.12
1814 2085 3.313526 GGTCGACAAATCTACGGCTAGTA 59.686 47.826 18.91 0.00 0.00 1.82
1821 2092 3.489180 ACAGAGGTCGACAAATCTACG 57.511 47.619 18.91 8.75 0.00 3.51
1833 2115 1.675116 GGTAGGGCGAAAACAGAGGTC 60.675 57.143 0.00 0.00 0.00 3.85
1846 2128 1.884067 GCATGAAGGCATAGGTAGGGC 60.884 57.143 0.00 0.00 32.27 5.19
1872 2154 5.280654 AGTAAGGACTAACGACCACAAAA 57.719 39.130 0.00 0.00 32.65 2.44
1874 2156 5.072741 ACTAGTAAGGACTAACGACCACAA 58.927 41.667 0.00 0.00 37.72 3.33
1875 2157 4.655963 ACTAGTAAGGACTAACGACCACA 58.344 43.478 0.00 0.00 37.72 4.17
1876 2158 5.635417 AACTAGTAAGGACTAACGACCAC 57.365 43.478 0.00 0.00 37.72 4.16
1877 2159 6.655078 AAAACTAGTAAGGACTAACGACCA 57.345 37.500 0.00 0.00 37.72 4.02
1907 2191 5.973565 GGAAATCCTGCATAATTGAAGAACG 59.026 40.000 0.00 0.00 28.60 3.95
1917 2201 4.016444 GTTGTCCTGGAAATCCTGCATAA 58.984 43.478 0.00 0.00 36.82 1.90
1918 2202 3.010027 TGTTGTCCTGGAAATCCTGCATA 59.990 43.478 0.00 0.00 36.82 3.14
1920 2204 1.144708 TGTTGTCCTGGAAATCCTGCA 59.855 47.619 0.00 0.00 36.82 4.41
1930 2214 0.394192 TCAGCAGTCTGTTGTCCTGG 59.606 55.000 15.38 0.00 41.10 4.45
1978 2262 9.463902 TCCGTTATAATTTCTTTGGAATGGTTA 57.536 29.630 0.00 0.00 0.00 2.85
2011 2295 2.574450 TGTTTGTTCATGCAGCTCTCA 58.426 42.857 0.00 0.00 0.00 3.27
2038 2322 2.632377 TCCAGCGAATTCACCAGATTC 58.368 47.619 6.22 0.00 0.00 2.52
2053 2337 2.286872 CTTCCACTGATGACATCCAGC 58.713 52.381 12.90 0.00 33.90 4.85
2080 2364 1.051812 AGCAGTACAACTCCAGCTGT 58.948 50.000 13.81 0.00 0.00 4.40
2084 2368 2.996621 GCTTGTAGCAGTACAACTCCAG 59.003 50.000 0.00 0.00 42.99 3.86
2092 2376 4.065789 ACCTTTCAAGCTTGTAGCAGTAC 58.934 43.478 25.19 0.00 45.56 2.73
2167 2451 4.579869 TCTTGTCAAGGCTATGGAAGTTC 58.420 43.478 12.66 0.00 0.00 3.01
2175 2459 3.678056 TGACGTTCTTGTCAAGGCTAT 57.322 42.857 12.66 0.00 45.40 2.97
2206 2490 3.359654 CTTGTGTCGGTGTAAAACAAGC 58.640 45.455 1.35 0.00 40.71 4.01
2226 2510 5.047306 TCAGAGTTCAATAATCGTGTGTCCT 60.047 40.000 0.00 0.00 0.00 3.85
2235 2519 8.937634 AATTTGGCATTCAGAGTTCAATAATC 57.062 30.769 0.00 0.00 0.00 1.75
2347 2631 4.919754 CCATAAAACTTTCACAGCTCAAGC 59.080 41.667 0.00 0.00 42.49 4.01
2348 2632 6.076981 ACCATAAAACTTTCACAGCTCAAG 57.923 37.500 0.00 0.00 0.00 3.02
2349 2633 6.463995 AACCATAAAACTTTCACAGCTCAA 57.536 33.333 0.00 0.00 0.00 3.02
2352 2636 7.582667 ACTAAACCATAAAACTTTCACAGCT 57.417 32.000 0.00 0.00 0.00 4.24
2353 2637 8.642908 AAACTAAACCATAAAACTTTCACAGC 57.357 30.769 0.00 0.00 0.00 4.40
2354 2638 8.953990 CGAAACTAAACCATAAAACTTTCACAG 58.046 33.333 0.00 0.00 0.00 3.66
2355 2639 8.675504 TCGAAACTAAACCATAAAACTTTCACA 58.324 29.630 0.00 0.00 0.00 3.58
2356 2640 9.166126 CTCGAAACTAAACCATAAAACTTTCAC 57.834 33.333 0.00 0.00 0.00 3.18
2357 2641 8.895737 ACTCGAAACTAAACCATAAAACTTTCA 58.104 29.630 0.00 0.00 0.00 2.69
2361 2645 8.347771 GGAAACTCGAAACTAAACCATAAAACT 58.652 33.333 0.00 0.00 0.00 2.66
2362 2646 8.347771 AGGAAACTCGAAACTAAACCATAAAAC 58.652 33.333 0.00 0.00 32.90 2.43
2446 2731 5.750524 TGCCTTTTATATGGACAAGCTGTA 58.249 37.500 0.00 0.00 0.00 2.74
2504 2821 5.684291 GCAGTTACAACTAGAGGGAATACCC 60.684 48.000 0.00 0.00 46.49 3.69
2505 2822 5.358090 GCAGTTACAACTAGAGGGAATACC 58.642 45.833 0.00 0.00 37.08 2.73
2506 2823 5.041940 CGCAGTTACAACTAGAGGGAATAC 58.958 45.833 0.00 0.00 37.08 1.89
2507 2824 4.951715 TCGCAGTTACAACTAGAGGGAATA 59.048 41.667 0.00 0.00 37.08 1.75
2508 2825 3.767673 TCGCAGTTACAACTAGAGGGAAT 59.232 43.478 0.00 0.00 37.08 3.01
2509 2826 3.159472 TCGCAGTTACAACTAGAGGGAA 58.841 45.455 0.00 0.00 37.08 3.97
2510 2827 2.753452 CTCGCAGTTACAACTAGAGGGA 59.247 50.000 14.24 7.66 38.35 4.20
2511 2828 2.492484 ACTCGCAGTTACAACTAGAGGG 59.508 50.000 20.95 10.44 42.37 4.30
2512 2829 3.502920 CACTCGCAGTTACAACTAGAGG 58.497 50.000 20.95 12.07 42.37 3.69
2513 2830 2.917971 GCACTCGCAGTTACAACTAGAG 59.082 50.000 17.85 17.85 43.05 2.43
2514 2831 2.352421 GGCACTCGCAGTTACAACTAGA 60.352 50.000 0.00 0.00 41.24 2.43
2515 2832 1.993370 GGCACTCGCAGTTACAACTAG 59.007 52.381 0.00 0.00 41.24 2.57
2516 2833 1.341852 TGGCACTCGCAGTTACAACTA 59.658 47.619 0.00 0.00 41.24 2.24
2517 2834 0.105964 TGGCACTCGCAGTTACAACT 59.894 50.000 0.00 0.00 41.24 3.16
2518 2835 0.234884 GTGGCACTCGCAGTTACAAC 59.765 55.000 11.13 0.00 41.24 3.32
2519 2836 0.179070 TGTGGCACTCGCAGTTACAA 60.179 50.000 19.83 0.00 41.24 2.41
2520 2837 0.034756 ATGTGGCACTCGCAGTTACA 59.965 50.000 19.83 0.00 41.24 2.41
2521 2838 0.721718 GATGTGGCACTCGCAGTTAC 59.278 55.000 19.83 0.00 41.24 2.50
2522 2839 0.320050 TGATGTGGCACTCGCAGTTA 59.680 50.000 19.83 0.00 41.24 2.24
2523 2840 0.321919 ATGATGTGGCACTCGCAGTT 60.322 50.000 19.83 0.00 41.24 3.16
2524 2841 0.742281 GATGATGTGGCACTCGCAGT 60.742 55.000 19.83 0.00 41.24 4.40
2525 2842 0.461516 AGATGATGTGGCACTCGCAG 60.462 55.000 19.83 0.00 41.24 5.18
2526 2843 0.823460 TAGATGATGTGGCACTCGCA 59.177 50.000 19.83 13.84 41.24 5.10
2527 2844 1.202463 AGTAGATGATGTGGCACTCGC 60.202 52.381 19.83 8.47 37.44 5.03
2528 2845 2.879002 AGTAGATGATGTGGCACTCG 57.121 50.000 19.83 0.00 0.00 4.18
2529 2846 5.163509 TGACTAAGTAGATGATGTGGCACTC 60.164 44.000 19.83 13.73 0.00 3.51
2530 2847 4.711846 TGACTAAGTAGATGATGTGGCACT 59.288 41.667 19.83 4.13 0.00 4.40
2531 2848 4.806247 GTGACTAAGTAGATGATGTGGCAC 59.194 45.833 11.55 11.55 0.00 5.01
2532 2849 4.466015 TGTGACTAAGTAGATGATGTGGCA 59.534 41.667 0.00 0.00 0.00 4.92
2533 2850 4.806247 GTGTGACTAAGTAGATGATGTGGC 59.194 45.833 0.00 0.00 0.00 5.01
2534 2851 5.807520 GTGTGTGACTAAGTAGATGATGTGG 59.192 44.000 0.00 0.00 0.00 4.17
2535 2852 6.529477 CAGTGTGTGACTAAGTAGATGATGTG 59.471 42.308 0.00 0.00 31.73 3.21
2536 2853 6.209589 ACAGTGTGTGACTAAGTAGATGATGT 59.790 38.462 0.00 0.00 31.73 3.06
2537 2854 6.625362 ACAGTGTGTGACTAAGTAGATGATG 58.375 40.000 0.00 0.00 31.73 3.07
2538 2855 6.842437 ACAGTGTGTGACTAAGTAGATGAT 57.158 37.500 0.00 0.00 31.73 2.45
2539 2856 7.939784 ATACAGTGTGTGACTAAGTAGATGA 57.060 36.000 5.88 0.00 31.73 2.92
2540 2857 8.864024 CAAATACAGTGTGTGACTAAGTAGATG 58.136 37.037 5.88 0.00 31.73 2.90
2541 2858 8.035394 CCAAATACAGTGTGTGACTAAGTAGAT 58.965 37.037 5.88 0.00 31.73 1.98
2542 2859 7.375834 CCAAATACAGTGTGTGACTAAGTAGA 58.624 38.462 5.88 0.00 31.73 2.59
2543 2860 6.590292 CCCAAATACAGTGTGTGACTAAGTAG 59.410 42.308 5.88 0.00 31.73 2.57
2544 2861 6.268158 TCCCAAATACAGTGTGTGACTAAGTA 59.732 38.462 5.88 0.00 31.73 2.24
2545 2862 5.071250 TCCCAAATACAGTGTGTGACTAAGT 59.929 40.000 5.88 0.00 31.73 2.24
2546 2863 5.408604 GTCCCAAATACAGTGTGTGACTAAG 59.591 44.000 5.88 0.00 31.73 2.18
2547 2864 5.071250 AGTCCCAAATACAGTGTGTGACTAA 59.929 40.000 5.88 0.00 31.73 2.24
2548 2865 4.591498 AGTCCCAAATACAGTGTGTGACTA 59.409 41.667 5.88 0.00 31.73 2.59
2549 2866 3.391296 AGTCCCAAATACAGTGTGTGACT 59.609 43.478 5.88 5.52 34.02 3.41
2550 2867 3.740115 AGTCCCAAATACAGTGTGTGAC 58.260 45.455 5.88 3.15 0.00 3.67
2551 2868 5.554437 TTAGTCCCAAATACAGTGTGTGA 57.446 39.130 5.88 0.00 0.00 3.58
2552 2869 6.627395 TTTTAGTCCCAAATACAGTGTGTG 57.373 37.500 5.88 1.24 0.00 3.82
2553 2870 7.174946 CAGATTTTAGTCCCAAATACAGTGTGT 59.825 37.037 5.88 0.00 0.00 3.72
2554 2871 7.390440 TCAGATTTTAGTCCCAAATACAGTGTG 59.610 37.037 5.88 0.00 0.00 3.82
2555 2872 7.458397 TCAGATTTTAGTCCCAAATACAGTGT 58.542 34.615 0.00 0.00 0.00 3.55
2556 2873 7.921786 TCAGATTTTAGTCCCAAATACAGTG 57.078 36.000 0.00 0.00 0.00 3.66
2557 2874 7.942341 TGTTCAGATTTTAGTCCCAAATACAGT 59.058 33.333 0.00 0.00 0.00 3.55
2558 2875 8.335532 TGTTCAGATTTTAGTCCCAAATACAG 57.664 34.615 0.00 0.00 0.00 2.74
2559 2876 8.739039 CATGTTCAGATTTTAGTCCCAAATACA 58.261 33.333 0.00 0.00 0.00 2.29
2560 2877 8.190784 CCATGTTCAGATTTTAGTCCCAAATAC 58.809 37.037 0.00 0.00 0.00 1.89
2561 2878 7.341769 CCCATGTTCAGATTTTAGTCCCAAATA 59.658 37.037 0.00 0.00 0.00 1.40
2562 2879 6.155049 CCCATGTTCAGATTTTAGTCCCAAAT 59.845 38.462 0.00 0.00 0.00 2.32
2563 2880 5.480073 CCCATGTTCAGATTTTAGTCCCAAA 59.520 40.000 0.00 0.00 0.00 3.28
2564 2881 5.016173 CCCATGTTCAGATTTTAGTCCCAA 58.984 41.667 0.00 0.00 0.00 4.12
2565 2882 4.044065 ACCCATGTTCAGATTTTAGTCCCA 59.956 41.667 0.00 0.00 0.00 4.37
2566 2883 4.600062 ACCCATGTTCAGATTTTAGTCCC 58.400 43.478 0.00 0.00 0.00 4.46
2567 2884 7.013369 GGAATACCCATGTTCAGATTTTAGTCC 59.987 40.741 0.00 0.00 34.14 3.85
2568 2885 7.931275 GGAATACCCATGTTCAGATTTTAGTC 58.069 38.462 0.00 0.00 34.14 2.59
2569 2886 7.881775 GGAATACCCATGTTCAGATTTTAGT 57.118 36.000 0.00 0.00 34.14 2.24
2614 2931 4.806247 GTGTGACTAAGTAGATGATGTGCC 59.194 45.833 0.00 0.00 0.00 5.01
2682 3001 1.476891 TCCAATCGCGCTAAGAGAACT 59.523 47.619 5.56 0.00 31.00 3.01
2695 3014 5.522460 ACGTAGATTAACCATTGTCCAATCG 59.478 40.000 0.00 0.00 33.90 3.34
2778 3106 3.181510 CGTGAAGCCAGTTAAATAGCCAC 60.182 47.826 0.00 0.00 0.00 5.01
2779 3107 3.006940 CGTGAAGCCAGTTAAATAGCCA 58.993 45.455 0.00 0.00 0.00 4.75
2799 3127 7.417612 CCTAAAACATGGATTAAGGAATCACG 58.582 38.462 0.00 0.00 42.95 4.35
2806 3134 4.956075 ACAGCCCTAAAACATGGATTAAGG 59.044 41.667 0.00 0.59 0.00 2.69
2964 3321 4.530710 TTACAAGAGCTAACGGTCACAT 57.469 40.909 0.00 0.00 40.07 3.21
3025 3386 2.805671 TGTACACATTTCTGAACCTGCG 59.194 45.455 0.00 0.00 0.00 5.18
3383 3807 1.782044 CAGGTTGAAATGTTTGGGCG 58.218 50.000 0.00 0.00 0.00 6.13
3467 3891 3.291584 CTCTGGTGCCTGACTAGTCATA 58.708 50.000 25.35 12.45 39.13 2.15
3470 3894 1.551452 ACTCTGGTGCCTGACTAGTC 58.449 55.000 16.32 16.32 34.76 2.59
3527 3951 0.247736 GCGAGTGAACATCCTGGACT 59.752 55.000 0.00 0.00 0.00 3.85
3559 3983 4.290622 CCTGGGGCTGTGGCTGTT 62.291 66.667 0.00 0.00 38.73 3.16
3572 4008 2.519063 TGCTGTTGTGCCACCTGG 60.519 61.111 0.00 0.00 38.53 4.45
3638 4074 1.522580 GGCCTGCGGAGAAGATGTC 60.523 63.158 5.10 0.00 0.00 3.06
3764 4200 3.004315 GCTGGGAAGAAGAGATCGTAGAG 59.996 52.174 0.00 0.00 43.63 2.43
3842 4278 2.617308 CTGGATGTGATGTTCTGCCATC 59.383 50.000 0.00 0.00 41.32 3.51
3866 4302 2.282040 AACTGCTGGGTCTGCTGC 60.282 61.111 0.00 0.00 32.47 5.25
3951 4387 2.153401 TGTTGTAGGCCTGGGCACT 61.153 57.895 23.25 11.36 44.11 4.40
3980 4416 2.116125 GCACTGTTGGGAGGGCTT 59.884 61.111 0.00 0.00 39.48 4.35
4001 4437 4.134563 GAGGAAGGACAGCAACAAAAGTA 58.865 43.478 0.00 0.00 0.00 2.24
4043 4479 1.005275 ATGGAGCATCATCGGAGCG 60.005 57.895 0.00 0.00 36.25 5.03
4077 4513 1.296392 CAGGGTGATTCTGCACGGA 59.704 57.895 0.00 0.00 39.66 4.69
4229 4665 4.451150 TAGCCAGACCAAGCCGCG 62.451 66.667 0.00 0.00 0.00 6.46
4279 4715 2.902486 AGAAAGTCACAGGAGCAGATGA 59.098 45.455 0.00 0.00 0.00 2.92
4292 4728 6.072119 ACACAGTATATCACACGAGAAAGTCA 60.072 38.462 0.00 0.00 0.00 3.41
4313 4749 1.616374 TCACAGTAAGATCGCCACACA 59.384 47.619 0.00 0.00 0.00 3.72
4328 4764 1.436600 AAGCGAGCTTCACATCACAG 58.563 50.000 4.26 0.00 0.00 3.66
4500 4938 5.994887 AGCATACGCGTCCATTAAAAATA 57.005 34.783 18.63 0.00 45.49 1.40
4638 5077 2.562912 CGGCAATGCGAACTGCTT 59.437 55.556 0.00 0.00 46.63 3.91
4645 5084 2.596046 ACAAACCCGGCAATGCGA 60.596 55.556 0.00 0.00 0.00 5.10
4646 5085 2.430582 CACAAACCCGGCAATGCG 60.431 61.111 0.00 0.00 0.00 4.73
4648 5087 1.199097 GTAGACACAAACCCGGCAATG 59.801 52.381 0.00 0.00 0.00 2.82
4695 5137 5.296780 CCACCGTAAATTTCTCACAGCATAT 59.703 40.000 0.00 0.00 0.00 1.78
4696 5138 4.634004 CCACCGTAAATTTCTCACAGCATA 59.366 41.667 0.00 0.00 0.00 3.14
4697 5139 3.440173 CCACCGTAAATTTCTCACAGCAT 59.560 43.478 0.00 0.00 0.00 3.79
4715 5157 0.825840 TAAGCCACAGCCAAACCACC 60.826 55.000 0.00 0.00 41.25 4.61
4744 5186 1.145571 AGTTACTTCCCCCACAGCAA 58.854 50.000 0.00 0.00 0.00 3.91
4822 5265 4.446371 CCTTCAGTTCAGTTCAGTTCAGT 58.554 43.478 0.00 0.00 0.00 3.41
4823 5266 3.812053 CCCTTCAGTTCAGTTCAGTTCAG 59.188 47.826 0.00 0.00 0.00 3.02
4824 5267 3.454447 TCCCTTCAGTTCAGTTCAGTTCA 59.546 43.478 0.00 0.00 0.00 3.18
4825 5268 4.073293 TCCCTTCAGTTCAGTTCAGTTC 57.927 45.455 0.00 0.00 0.00 3.01
4826 5269 4.503714 TTCCCTTCAGTTCAGTTCAGTT 57.496 40.909 0.00 0.00 0.00 3.16
4843 5286 5.995446 AGTTCTCCAGAATGAGTATTTCCC 58.005 41.667 0.00 0.00 39.69 3.97
4846 5289 7.621683 AGACCTAGTTCTCCAGAATGAGTATTT 59.378 37.037 0.00 0.00 39.69 1.40
4877 5320 5.766670 GTGGCATCCTCATTGATTAGAATGA 59.233 40.000 0.00 0.00 39.52 2.57
4883 5337 3.459227 TCAGGTGGCATCCTCATTGATTA 59.541 43.478 5.76 0.00 35.37 1.75
4900 5361 1.207791 CATCAGTAGGGGCTTCAGGT 58.792 55.000 0.00 0.00 0.00 4.00
4968 5430 1.004044 AGAGGCCTTTGACATGGACTG 59.996 52.381 6.77 0.00 42.77 3.51
4972 5434 2.503895 AAGAGAGGCCTTTGACATGG 57.496 50.000 6.77 0.00 0.00 3.66
4984 5446 4.837972 CCTGGAGGAAACTAAAAGAGAGG 58.162 47.826 0.00 0.00 44.43 3.69
5014 5476 3.612241 CGAGAAATGAACAGCCATTTGCA 60.612 43.478 6.59 0.00 44.19 4.08
5016 5478 4.083110 ACTCGAGAAATGAACAGCCATTTG 60.083 41.667 21.68 0.00 44.19 2.32
5020 5482 2.612972 GGACTCGAGAAATGAACAGCCA 60.613 50.000 21.68 0.00 0.00 4.75
5021 5483 2.003301 GGACTCGAGAAATGAACAGCC 58.997 52.381 21.68 0.75 0.00 4.85
5023 5485 4.083802 GGTTTGGACTCGAGAAATGAACAG 60.084 45.833 21.68 0.00 0.00 3.16
5046 5508 6.663523 AGTGGAACATCTTAAATTGGTTAGGG 59.336 38.462 0.00 0.00 44.52 3.53
5065 5527 1.951209 TATGGGAGCAGACAGTGGAA 58.049 50.000 0.00 0.00 0.00 3.53
5070 5532 4.769688 TGTGTTATTATGGGAGCAGACAG 58.230 43.478 0.00 0.00 0.00 3.51
5077 5539 8.621286 GTTAACCTGATTGTGTTATTATGGGAG 58.379 37.037 0.00 0.00 0.00 4.30
5091 5553 4.214119 CACTGTCACCTGTTAACCTGATTG 59.786 45.833 2.48 2.15 0.00 2.67
5092 5554 4.141482 ACACTGTCACCTGTTAACCTGATT 60.141 41.667 2.48 0.00 0.00 2.57
5093 5555 3.391296 ACACTGTCACCTGTTAACCTGAT 59.609 43.478 2.48 0.00 0.00 2.90
5105 5567 6.150641 TGTCAGATAGTAAGTACACTGTCACC 59.849 42.308 11.15 1.96 38.68 4.02
5112 5574 7.036220 AGCATTGTGTCAGATAGTAAGTACAC 58.964 38.462 0.00 0.00 38.13 2.90
5148 5614 0.251742 TTATGGCTGTTGCAAGGGCT 60.252 50.000 20.79 12.20 41.91 5.19
5177 5643 9.295825 TCAGTTTAATATTCATTCTGTGGTTGT 57.704 29.630 0.00 0.00 0.00 3.32
5202 5668 4.128925 TGTGTATGCTCATCAGACCTTC 57.871 45.455 0.00 0.00 36.11 3.46
5209 5675 2.356022 CCTGGGTTGTGTATGCTCATCA 60.356 50.000 0.00 0.00 0.00 3.07
5210 5676 2.292267 CCTGGGTTGTGTATGCTCATC 58.708 52.381 0.00 0.00 0.00 2.92
5211 5677 1.635487 ACCTGGGTTGTGTATGCTCAT 59.365 47.619 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.