Multiple sequence alignment - TraesCS1A01G393700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G393700 chr1A 100.000 4259 0 0 1 4259 560182543 560178285 0.000000e+00 7866.0
1 TraesCS1A01G393700 chr1A 77.684 354 58 16 6 349 558041126 558041468 3.360000e-46 196.0
2 TraesCS1A01G393700 chr1A 77.253 233 34 12 2924 3154 262339190 262338975 7.480000e-23 119.0
3 TraesCS1A01G393700 chr1B 93.615 3602 158 22 587 4157 645706749 645710309 0.000000e+00 5312.0
4 TraesCS1A01G393700 chr1B 76.710 541 101 16 32 563 367431097 367431621 1.170000e-70 278.0
5 TraesCS1A01G393700 chr1D 93.038 3203 123 37 320 3470 467800354 467803508 0.000000e+00 4588.0
6 TraesCS1A01G393700 chr1D 96.327 735 23 2 3529 4259 467803636 467804370 0.000000e+00 1205.0
7 TraesCS1A01G393700 chr1D 78.498 586 80 30 20 575 108800205 108800774 4.080000e-90 342.0
8 TraesCS1A01G393700 chr1D 77.526 574 97 23 5 565 362255456 362254902 2.470000e-82 316.0
9 TraesCS1A01G393700 chr1D 78.019 414 60 15 168 575 276536267 276536655 9.210000e-57 231.0
10 TraesCS1A01G393700 chr1D 81.944 288 39 9 5 290 467800077 467800353 9.210000e-57 231.0
11 TraesCS1A01G393700 chr6B 81.796 1225 217 5 1283 2503 123911204 123912426 0.000000e+00 1022.0
12 TraesCS1A01G393700 chr6B 78.061 588 83 32 5 563 43148836 43148266 3.170000e-86 329.0
13 TraesCS1A01G393700 chr6B 77.922 539 76 30 19 535 66737152 66736635 3.220000e-76 296.0
14 TraesCS1A01G393700 chr6A 81.157 1279 224 12 1222 2489 67641914 67643186 0.000000e+00 1011.0
15 TraesCS1A01G393700 chr6A 88.791 455 27 9 3019 3460 4867322 4867765 1.740000e-148 536.0
16 TraesCS1A01G393700 chr6A 91.645 383 30 2 3529 3909 4867790 4868172 2.920000e-146 529.0
17 TraesCS1A01G393700 chr6A 84.921 378 34 6 3892 4259 4868187 4868551 1.130000e-95 361.0
18 TraesCS1A01G393700 chr6D 80.372 1289 239 12 1222 2504 47638440 47637160 0.000000e+00 966.0
19 TraesCS1A01G393700 chr6D 74.840 1403 290 46 1207 2569 5042918 5044297 1.030000e-160 577.0
20 TraesCS1A01G393700 chr6D 77.625 581 80 25 19 578 33248281 33247730 1.490000e-79 307.0
21 TraesCS1A01G393700 chr7D 79.564 597 77 28 6 573 208679856 208679276 6.680000e-103 385.0
22 TraesCS1A01G393700 chr3B 79.828 580 75 26 13 563 93243738 93243172 6.680000e-103 385.0
23 TraesCS1A01G393700 chr4D 77.899 552 89 28 23 563 93762191 93762720 3.200000e-81 313.0
24 TraesCS1A01G393700 chr5D 75.304 494 101 18 1975 2464 441238483 441238007 2.580000e-52 217.0
25 TraesCS1A01G393700 chr5D 85.475 179 26 0 1285 1463 441358619 441358441 2.020000e-43 187.0
26 TraesCS1A01G393700 chr5D 84.699 183 27 1 1281 1463 441239155 441238974 9.410000e-42 182.0
27 TraesCS1A01G393700 chr5D 73.387 496 109 18 1979 2469 441162929 441162452 3.410000e-36 163.0
28 TraesCS1A01G393700 chr5B 85.246 183 26 1 1281 1463 536910844 536910663 2.020000e-43 187.0
29 TraesCS1A01G393700 chr5B 85.000 180 27 0 1284 1463 664377432 664377253 2.620000e-42 183.0
30 TraesCS1A01G393700 chr2A 76.395 233 36 11 2924 3154 6378088 6378303 1.620000e-19 108.0
31 TraesCS1A01G393700 chr7A 78.531 177 27 8 2924 3099 119835817 119835983 5.820000e-19 106.0
32 TraesCS1A01G393700 chr3A 85.366 82 5 5 212 287 517660245 517660325 1.270000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G393700 chr1A 560178285 560182543 4258 True 7866.000000 7866 100.000000 1 4259 1 chr1A.!!$R2 4258
1 TraesCS1A01G393700 chr1B 645706749 645710309 3560 False 5312.000000 5312 93.615000 587 4157 1 chr1B.!!$F2 3570
2 TraesCS1A01G393700 chr1B 367431097 367431621 524 False 278.000000 278 76.710000 32 563 1 chr1B.!!$F1 531
3 TraesCS1A01G393700 chr1D 467800077 467804370 4293 False 2008.000000 4588 90.436333 5 4259 3 chr1D.!!$F3 4254
4 TraesCS1A01G393700 chr1D 108800205 108800774 569 False 342.000000 342 78.498000 20 575 1 chr1D.!!$F1 555
5 TraesCS1A01G393700 chr1D 362254902 362255456 554 True 316.000000 316 77.526000 5 565 1 chr1D.!!$R1 560
6 TraesCS1A01G393700 chr6B 123911204 123912426 1222 False 1022.000000 1022 81.796000 1283 2503 1 chr6B.!!$F1 1220
7 TraesCS1A01G393700 chr6B 43148266 43148836 570 True 329.000000 329 78.061000 5 563 1 chr6B.!!$R1 558
8 TraesCS1A01G393700 chr6B 66736635 66737152 517 True 296.000000 296 77.922000 19 535 1 chr6B.!!$R2 516
9 TraesCS1A01G393700 chr6A 67641914 67643186 1272 False 1011.000000 1011 81.157000 1222 2489 1 chr6A.!!$F1 1267
10 TraesCS1A01G393700 chr6A 4867322 4868551 1229 False 475.333333 536 88.452333 3019 4259 3 chr6A.!!$F2 1240
11 TraesCS1A01G393700 chr6D 47637160 47638440 1280 True 966.000000 966 80.372000 1222 2504 1 chr6D.!!$R2 1282
12 TraesCS1A01G393700 chr6D 5042918 5044297 1379 False 577.000000 577 74.840000 1207 2569 1 chr6D.!!$F1 1362
13 TraesCS1A01G393700 chr6D 33247730 33248281 551 True 307.000000 307 77.625000 19 578 1 chr6D.!!$R1 559
14 TraesCS1A01G393700 chr7D 208679276 208679856 580 True 385.000000 385 79.564000 6 573 1 chr7D.!!$R1 567
15 TraesCS1A01G393700 chr3B 93243172 93243738 566 True 385.000000 385 79.828000 13 563 1 chr3B.!!$R1 550
16 TraesCS1A01G393700 chr4D 93762191 93762720 529 False 313.000000 313 77.899000 23 563 1 chr4D.!!$F1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
711 791 1.988406 GGCTACCCTTGACTCCCGT 60.988 63.158 0.00 0.0 0.00 5.28 F
1028 1129 0.179043 GCTTCCGAGGAGATTTCCCC 60.179 60.000 0.00 0.0 45.24 4.81 F
1180 1281 1.069513 CAATCGGCCCATTGCATTGAT 59.930 47.619 10.31 0.0 43.89 2.57 F
1821 1942 1.070821 GGCCGAATTTTTCAGCAAGC 58.929 50.000 0.00 0.0 34.79 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 1949 0.604243 ATACACGCGCACCCTGAAAA 60.604 50.000 5.73 0.0 0.0 2.29 R
2646 2789 1.391144 GTATGGTCGTAAACACCACGC 59.609 52.381 0.00 0.0 46.9 5.34 R
2873 3020 1.895131 ACATCCATTTGTGTCCAAGGC 59.105 47.619 0.00 0.0 0.0 4.35 R
3514 3759 0.036010 AGCGGACTGAATGACCCAAG 60.036 55.000 0.00 0.0 0.0 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 9.301153 AGATAAATTCCGTTTCAATAATTGTGC 57.699 29.630 0.00 0.00 0.00 4.57
111 112 2.593775 CCGTTTCAATAATTGTGCGCAG 59.406 45.455 12.22 0.00 0.00 5.18
202 209 2.998772 TGTCTGCGTTCTGAATTTTGC 58.001 42.857 0.00 0.00 0.00 3.68
404 441 8.910351 TCAAAAATAAAATCCCGTTTTTGGAT 57.090 26.923 17.08 1.42 45.00 3.41
453 508 7.908193 AGTGTTCACGTTTCATAAAACATTC 57.092 32.000 0.00 0.00 44.13 2.67
456 511 9.440784 GTGTTCACGTTTCATAAAACATTCTTA 57.559 29.630 0.00 0.00 44.13 2.10
537 592 5.060446 GGTTTTGGTTCTTAATTGATTCGCG 59.940 40.000 0.00 0.00 0.00 5.87
565 621 7.493320 AGCAAAATATTCAGATACGGTCGTTAA 59.507 33.333 0.16 0.00 0.00 2.01
701 768 4.547367 GATTGCGCCGGCTACCCT 62.547 66.667 26.68 4.84 40.82 4.34
711 791 1.988406 GGCTACCCTTGACTCCCGT 60.988 63.158 0.00 0.00 0.00 5.28
883 975 8.862091 TTATCCTTCCTCTTCTCTCCTAATTT 57.138 34.615 0.00 0.00 0.00 1.82
884 976 6.800072 TCCTTCCTCTTCTCTCCTAATTTC 57.200 41.667 0.00 0.00 0.00 2.17
892 984 7.763985 CCTCTTCTCTCCTAATTTCTTCTTCAC 59.236 40.741 0.00 0.00 0.00 3.18
970 1068 7.636150 TCAACTCTACCTACATGTACTTACC 57.364 40.000 0.08 0.00 0.00 2.85
1028 1129 0.179043 GCTTCCGAGGAGATTTCCCC 60.179 60.000 0.00 0.00 45.24 4.81
1029 1130 1.204146 CTTCCGAGGAGATTTCCCCA 58.796 55.000 0.00 0.00 45.24 4.96
1066 1167 2.130193 TCTCCCCATCCCTTCAGATTG 58.870 52.381 0.00 0.00 0.00 2.67
1126 1227 2.722094 TCAGTGTCCTGCAGTTTGTTT 58.278 42.857 13.81 0.00 38.66 2.83
1180 1281 1.069513 CAATCGGCCCATTGCATTGAT 59.930 47.619 10.31 0.00 43.89 2.57
1331 1443 2.633967 CCTCCTCATTGAGATCCTCCTG 59.366 54.545 15.36 0.00 34.11 3.86
1556 1677 4.883354 GCCCCCTTCATCTGCCGG 62.883 72.222 0.00 0.00 0.00 6.13
1685 1806 4.875713 CACCGCCCACTATGCCCC 62.876 72.222 0.00 0.00 0.00 5.80
1697 1818 2.053244 CTATGCCCCCAGAGAGACATT 58.947 52.381 0.00 0.00 32.01 2.71
1808 1929 3.070446 CCTACCTGTATATGTTGGCCGAA 59.930 47.826 0.00 0.00 0.00 4.30
1821 1942 1.070821 GGCCGAATTTTTCAGCAAGC 58.929 50.000 0.00 0.00 34.79 4.01
1828 1949 5.277925 CCGAATTTTTCAGCAAGCCAAAAAT 60.278 36.000 14.54 14.54 40.03 1.82
1940 2061 1.190323 GAAGTCGTGCTTGTTGACGAG 59.810 52.381 0.00 0.00 44.77 4.18
2017 2138 2.084546 CTCGGGTTTCTCCACAATTCC 58.915 52.381 0.00 0.00 38.11 3.01
2603 2746 7.972623 ACTACGCGATATTAGATAATGCTTC 57.027 36.000 15.93 0.00 0.00 3.86
2646 2789 5.045215 CACTTGTGCAATGGGCTAATATTG 58.955 41.667 0.00 0.00 45.15 1.90
2669 2812 3.122278 CGTGGTGTTTACGACCATACAAG 59.878 47.826 0.00 0.00 45.27 3.16
2906 3053 8.417106 ACACAAATGGATGTACATTTTACACAA 58.583 29.630 10.30 0.00 45.94 3.33
3100 3250 7.985476 TCTATTGGCTGTAGCTTTTGATAAAC 58.015 34.615 3.63 0.00 41.70 2.01
3101 3251 6.840780 ATTGGCTGTAGCTTTTGATAAACT 57.159 33.333 3.63 0.00 41.70 2.66
3213 3365 7.278461 TCTGATGCTGAATTACCTCTACTAC 57.722 40.000 0.00 0.00 0.00 2.73
3291 3443 6.377996 TGATATCAGGAAGTTTTTGGATGGTG 59.622 38.462 0.00 0.00 0.00 4.17
3470 3632 8.588290 AAACTCCCTGTATGCATGTTAATTAA 57.412 30.769 10.16 0.00 0.00 1.40
3508 3753 1.442769 CACTTGGGTCATTCAGTCCG 58.557 55.000 0.00 0.00 0.00 4.79
3511 3756 2.093447 ACTTGGGTCATTCAGTCCGATC 60.093 50.000 0.00 0.00 0.00 3.69
3512 3757 0.830648 TGGGTCATTCAGTCCGATCC 59.169 55.000 0.00 0.00 0.00 3.36
3513 3758 0.830648 GGGTCATTCAGTCCGATCCA 59.169 55.000 0.00 0.00 29.78 3.41
3514 3759 1.473434 GGGTCATTCAGTCCGATCCAC 60.473 57.143 0.00 0.00 29.78 4.02
3515 3760 1.482593 GGTCATTCAGTCCGATCCACT 59.517 52.381 0.00 0.00 0.00 4.00
3516 3761 2.093447 GGTCATTCAGTCCGATCCACTT 60.093 50.000 0.00 0.00 0.00 3.16
3517 3762 2.932614 GTCATTCAGTCCGATCCACTTG 59.067 50.000 0.00 0.00 0.00 3.16
3518 3763 2.093500 TCATTCAGTCCGATCCACTTGG 60.093 50.000 0.00 0.00 0.00 3.61
3519 3764 0.613260 TTCAGTCCGATCCACTTGGG 59.387 55.000 0.00 0.00 35.41 4.12
3520 3765 0.544357 TCAGTCCGATCCACTTGGGT 60.544 55.000 0.00 0.00 38.11 4.51
3521 3766 0.108138 CAGTCCGATCCACTTGGGTC 60.108 60.000 0.00 0.00 41.94 4.46
3522 3767 0.544357 AGTCCGATCCACTTGGGTCA 60.544 55.000 9.24 0.00 45.67 4.02
3523 3768 0.541863 GTCCGATCCACTTGGGTCAT 59.458 55.000 9.24 0.00 45.67 3.06
3524 3769 1.065418 GTCCGATCCACTTGGGTCATT 60.065 52.381 9.24 0.00 45.67 2.57
3525 3770 1.209504 TCCGATCCACTTGGGTCATTC 59.790 52.381 9.24 0.00 45.67 2.67
3526 3771 1.065491 CCGATCCACTTGGGTCATTCA 60.065 52.381 9.24 0.00 45.67 2.57
3546 3791 1.156736 GTCCGCTGCTTGCTCTTTTA 58.843 50.000 0.00 0.00 40.11 1.52
3566 3811 9.228949 TCTTTTAGTTAGTTGTGGTGTTTGTAA 57.771 29.630 0.00 0.00 0.00 2.41
3737 3982 6.409704 ACAAATGTACAGATCTAGTGCACAT 58.590 36.000 21.04 3.32 34.04 3.21
3782 4029 6.020678 GTGTGTCATTTTAGTGAGTGTTTTGC 60.021 38.462 0.00 0.00 0.00 3.68
3793 4040 7.744087 AGTGAGTGTTTTGCTATGTCAATTA 57.256 32.000 0.00 0.00 0.00 1.40
3807 4054 9.604626 GCTATGTCAATTATTTTGTCTAGCATC 57.395 33.333 0.00 0.00 0.00 3.91
4005 4284 8.159447 TGGATAAGGTCAATTAAGGATGATCTG 58.841 37.037 0.00 0.00 37.11 2.90
4098 4387 3.055458 TCTTCCTTGTACGCCATGAATCA 60.055 43.478 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.990360 GGAATTTATCTTTAAACTCCCAAACAA 57.010 29.630 0.00 0.00 37.61 2.83
82 83 8.259194 CGCACAATTATTGAAACGGAATTTATC 58.741 33.333 12.28 0.00 0.00 1.75
104 105 3.040099 ACATTTTTCGTAAACTGCGCAC 58.960 40.909 5.66 0.00 29.64 5.34
107 108 5.398122 ACATGAACATTTTTCGTAAACTGCG 59.602 36.000 0.00 0.00 29.64 5.18
111 112 9.959775 TTGAAAACATGAACATTTTTCGTAAAC 57.040 25.926 0.00 0.00 40.58 2.01
164 169 8.177663 ACGCAGACATTTTATGAAAACTAGATG 58.822 33.333 0.00 0.00 32.37 2.90
295 325 9.607988 AAAACGGGAACTTTTTGAAATTTCTAT 57.392 25.926 18.64 0.00 39.94 1.98
537 592 5.424121 ACCGTATCTGAATATTTTGCTGC 57.576 39.130 0.00 0.00 0.00 5.25
565 621 1.251251 GACCAAGCTGCCAGTTGAAT 58.749 50.000 0.00 0.00 0.00 2.57
598 654 2.516227 TTTAATGGTGGGCGAATGGA 57.484 45.000 0.00 0.00 0.00 3.41
701 768 0.107831 CTGGGTTTCACGGGAGTCAA 59.892 55.000 0.00 0.00 44.67 3.18
711 791 0.690192 TTGAGCGGATCTGGGTTTCA 59.310 50.000 3.14 0.00 0.00 2.69
742 834 2.577059 GTCGATGCGGTGGAGGAA 59.423 61.111 0.00 0.00 0.00 3.36
883 975 5.473931 CGAGATGAAAAGAGGTGAAGAAGA 58.526 41.667 0.00 0.00 0.00 2.87
884 976 4.092675 GCGAGATGAAAAGAGGTGAAGAAG 59.907 45.833 0.00 0.00 0.00 2.85
892 984 0.175760 TCCCGCGAGATGAAAAGAGG 59.824 55.000 8.23 0.00 0.00 3.69
970 1068 1.277580 ATTGGAGTCCCCTCAGCTGG 61.278 60.000 15.13 4.45 39.64 4.85
1002 1100 1.043816 TCTCCTCGGAAGCATCCATC 58.956 55.000 8.98 0.00 46.97 3.51
1028 1129 1.478510 AGACTGGATGCTCTTACCGTG 59.521 52.381 0.00 0.00 0.00 4.94
1029 1130 1.751924 GAGACTGGATGCTCTTACCGT 59.248 52.381 0.00 0.00 0.00 4.83
1066 1167 4.002982 GGAAATGAAACAAATTGGGGAGC 58.997 43.478 0.00 0.00 0.00 4.70
1126 1227 5.601583 ATGGCATAAAAACATCAGCATCA 57.398 34.783 0.00 0.00 0.00 3.07
1180 1281 0.869454 CGGCGAACAAAGCAAAAGCA 60.869 50.000 0.00 0.00 36.08 3.91
1623 1744 3.058450 CTCTGCGGCATCTGATTAAGAG 58.942 50.000 1.75 0.00 38.67 2.85
1697 1818 0.911769 GGAGTGGTGGGATGACATCA 59.088 55.000 17.08 0.00 0.00 3.07
1808 1929 7.545489 TGAAAATTTTTGGCTTGCTGAAAAAT 58.455 26.923 4.63 15.79 39.71 1.82
1821 1942 1.530720 GCGCACCCTGAAAATTTTTGG 59.469 47.619 0.30 10.30 0.00 3.28
1828 1949 0.604243 ATACACGCGCACCCTGAAAA 60.604 50.000 5.73 0.00 0.00 2.29
1925 2046 2.730183 TTTTCTCGTCAACAAGCACG 57.270 45.000 0.00 0.00 37.36 5.34
1940 2061 6.767902 TGAAGGTGTCAGCCATATAGATTTTC 59.232 38.462 0.00 0.00 0.00 2.29
2163 2284 7.201487 CCACATCTGATGCAAACAAATTGTATG 60.201 37.037 17.24 0.00 43.35 2.39
2559 2702 7.412063 CGTAGTTAGTATTGTTAAAATGGCCC 58.588 38.462 0.00 0.00 0.00 5.80
2603 2746 9.014297 ACAAGTGATTTTAAGACATCTTAAGGG 57.986 33.333 12.58 0.00 45.72 3.95
2646 2789 1.391144 GTATGGTCGTAAACACCACGC 59.609 52.381 0.00 0.00 46.90 5.34
2669 2812 8.030106 GTCAAGCTCCTATACATGTTCTATACC 58.970 40.741 2.30 0.00 0.00 2.73
2873 3020 1.895131 ACATCCATTTGTGTCCAAGGC 59.105 47.619 0.00 0.00 0.00 4.35
2906 3053 6.886178 AGTATAACCTCAACAATACCTGGT 57.114 37.500 4.05 4.05 0.00 4.00
3213 3365 4.450053 GAAACAGAGGAAGGATCAGGATG 58.550 47.826 0.00 0.00 37.54 3.51
3291 3443 1.739562 CTGCTCACCCTTGTCGCTC 60.740 63.158 0.00 0.00 0.00 5.03
3365 3527 5.841237 ACTACCTGCTCCAGTTATACATCAT 59.159 40.000 0.00 0.00 0.00 2.45
3470 3632 7.557719 CCCAAGTGGATCAGAAAACATAACTAT 59.442 37.037 0.00 0.00 37.39 2.12
3490 3735 1.348064 TCGGACTGAATGACCCAAGT 58.652 50.000 0.00 0.00 0.00 3.16
3508 3753 3.274288 GACTGAATGACCCAAGTGGATC 58.726 50.000 0.00 0.00 37.39 3.36
3511 3756 1.826385 GGACTGAATGACCCAAGTGG 58.174 55.000 0.00 0.00 41.37 4.00
3512 3757 1.442769 CGGACTGAATGACCCAAGTG 58.557 55.000 0.00 0.00 0.00 3.16
3513 3758 0.321653 GCGGACTGAATGACCCAAGT 60.322 55.000 0.00 0.00 0.00 3.16
3514 3759 0.036010 AGCGGACTGAATGACCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
3515 3760 2.066340 AGCGGACTGAATGACCCAA 58.934 52.632 0.00 0.00 0.00 4.12
3516 3761 3.805928 AGCGGACTGAATGACCCA 58.194 55.556 0.00 0.00 0.00 4.51
3546 3791 6.412214 AGAGTTACAAACACCACAACTAACT 58.588 36.000 0.00 0.00 29.89 2.24
3566 3811 9.923143 GTTTTATTTTGCCTGGTAAATTAGAGT 57.077 29.630 10.80 0.00 0.00 3.24
3737 3982 4.000325 CACAACGGATTACTGGAACATGA 59.000 43.478 0.00 0.00 38.20 3.07
3793 4040 8.515695 TCAATGATCTTGATGCTAGACAAAAT 57.484 30.769 0.00 0.00 0.00 1.82
3807 4054 5.470437 AGCAGTATCAGCATCAATGATCTTG 59.530 40.000 0.00 0.00 38.36 3.02
4005 4284 5.388944 CAAGCTCAGTCATTTACAAAGAGC 58.611 41.667 0.00 0.00 43.93 4.09
4039 4320 0.465705 CCTGCTTAATCGGAGAGGCA 59.534 55.000 0.64 0.64 43.63 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.