Multiple sequence alignment - TraesCS1A01G393200
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1A01G393200
chr1A
100.000
2267
0
0
1
2267
559840717
559842983
0.000000e+00
4187.0
1
TraesCS1A01G393200
chr1A
97.414
696
18
0
1572
2267
513458192
513457497
0.000000e+00
1186.0
2
TraesCS1A01G393200
chr1A
77.225
1146
158
59
460
1553
559799886
559800980
1.950000e-160
575.0
3
TraesCS1A01G393200
chr1A
82.306
373
39
13
1189
1553
559830350
559830703
4.730000e-77
298.0
4
TraesCS1A01G393200
chr1B
88.423
1382
97
21
224
1553
645307291
645308661
0.000000e+00
1607.0
5
TraesCS1A01G393200
chr1B
87.692
130
8
3
117
239
645307139
645307267
6.530000e-31
145.0
6
TraesCS1A01G393200
chr1B
76.678
283
51
11
999
1275
645319903
645320176
2.350000e-30
143.0
7
TraesCS1A01G393200
chr1B
88.158
76
7
1
185
260
645269537
645269464
3.100000e-14
89.8
8
TraesCS1A01G393200
chr5A
97.414
696
18
0
1572
2267
3688615
3687920
0.000000e+00
1186.0
9
TraesCS1A01G393200
chr5A
97.274
697
19
0
1571
2267
682518066
682517370
0.000000e+00
1182.0
10
TraesCS1A01G393200
chr5A
96.624
711
21
2
1560
2267
648344880
648345590
0.000000e+00
1177.0
11
TraesCS1A01G393200
chr3A
97.414
696
18
0
1572
2267
26846774
26846079
0.000000e+00
1186.0
12
TraesCS1A01G393200
chr3A
97.159
704
17
3
1566
2267
691461751
691462453
0.000000e+00
1186.0
13
TraesCS1A01G393200
chr2A
97.278
698
19
0
1570
2267
71718769
71719466
0.000000e+00
1184.0
14
TraesCS1A01G393200
chr6A
97.274
697
19
0
1571
2267
573122900
573122204
0.000000e+00
1182.0
15
TraesCS1A01G393200
chr6A
97.009
702
21
0
1566
2267
8680928
8681629
0.000000e+00
1181.0
16
TraesCS1A01G393200
chr1D
87.382
634
32
16
376
979
467490551
467491166
0.000000e+00
684.0
17
TraesCS1A01G393200
chr1D
85.935
647
48
16
930
1567
467491167
467491779
0.000000e+00
651.0
18
TraesCS1A01G393200
chr1D
80.721
638
81
12
927
1553
467467284
467467890
2.050000e-125
459.0
19
TraesCS1A01G393200
chr1D
78.489
781
99
38
808
1553
467487334
467488080
4.440000e-122
448.0
20
TraesCS1A01G393200
chr1D
77.622
286
46
12
999
1275
467494683
467494959
8.380000e-35
158.0
21
TraesCS1A01G393200
chr1D
83.516
182
13
3
224
388
467490353
467490534
1.080000e-33
154.0
22
TraesCS1A01G393200
chr1D
84.071
113
7
3
809
921
467467149
467467250
5.150000e-17
99.0
23
TraesCS1A01G393200
chr5D
95.556
45
2
0
269
313
334903427
334903383
3.120000e-09
73.1
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1A01G393200
chr1A
559840717
559842983
2266
False
4187
4187
100.0000
1
2267
1
chr1A.!!$F3
2266
1
TraesCS1A01G393200
chr1A
513457497
513458192
695
True
1186
1186
97.4140
1572
2267
1
chr1A.!!$R1
695
2
TraesCS1A01G393200
chr1A
559799886
559800980
1094
False
575
575
77.2250
460
1553
1
chr1A.!!$F1
1093
3
TraesCS1A01G393200
chr1B
645307139
645308661
1522
False
876
1607
88.0575
117
1553
2
chr1B.!!$F2
1436
4
TraesCS1A01G393200
chr5A
3687920
3688615
695
True
1186
1186
97.4140
1572
2267
1
chr5A.!!$R1
695
5
TraesCS1A01G393200
chr5A
682517370
682518066
696
True
1182
1182
97.2740
1571
2267
1
chr5A.!!$R2
696
6
TraesCS1A01G393200
chr5A
648344880
648345590
710
False
1177
1177
96.6240
1560
2267
1
chr5A.!!$F1
707
7
TraesCS1A01G393200
chr3A
26846079
26846774
695
True
1186
1186
97.4140
1572
2267
1
chr3A.!!$R1
695
8
TraesCS1A01G393200
chr3A
691461751
691462453
702
False
1186
1186
97.1590
1566
2267
1
chr3A.!!$F1
701
9
TraesCS1A01G393200
chr2A
71718769
71719466
697
False
1184
1184
97.2780
1570
2267
1
chr2A.!!$F1
697
10
TraesCS1A01G393200
chr6A
573122204
573122900
696
True
1182
1182
97.2740
1571
2267
1
chr6A.!!$R1
696
11
TraesCS1A01G393200
chr6A
8680928
8681629
701
False
1181
1181
97.0090
1566
2267
1
chr6A.!!$F1
701
12
TraesCS1A01G393200
chr1D
467487334
467494959
7625
False
419
684
82.5888
224
1567
5
chr1D.!!$F2
1343
13
TraesCS1A01G393200
chr1D
467467149
467467890
741
False
279
459
82.3960
809
1553
2
chr1D.!!$F1
744
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
227
274
0.098905
CACGATCGACTGGACGTCAT
59.901
55.0
24.34
1.35
42.98
3.06
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1437
4446
1.000736
GCCGCGTCGCTTACTATACC
61.001
60.0
16.36
0.0
0.0
2.73
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
26
27
9.116067
GGTGCTACAATTACCATATAAAAGACA
57.884
33.333
0.00
0.00
34.61
3.41
32
33
9.959721
ACAATTACCATATAAAAGACAGACTGT
57.040
29.630
8.12
8.12
0.00
3.55
35
36
6.743575
ACCATATAAAAGACAGACTGTTGC
57.256
37.500
10.01
0.00
0.00
4.17
36
37
6.237901
ACCATATAAAAGACAGACTGTTGCA
58.762
36.000
10.01
0.00
0.00
4.08
37
38
6.886459
ACCATATAAAAGACAGACTGTTGCAT
59.114
34.615
10.01
2.52
0.00
3.96
38
39
8.046708
ACCATATAAAAGACAGACTGTTGCATA
58.953
33.333
10.01
4.54
0.00
3.14
40
41
4.732285
AAAAGACAGACTGTTGCATACG
57.268
40.909
10.01
0.00
0.00
3.06
41
42
2.370281
AGACAGACTGTTGCATACGG
57.630
50.000
10.01
0.00
39.17
4.02
43
44
1.726791
GACAGACTGTTGCATACGGTG
59.273
52.381
10.01
7.28
46.41
4.94
45
46
2.143122
CAGACTGTTGCATACGGTGTT
58.857
47.619
15.32
4.40
46.41
3.32
46
47
2.548057
CAGACTGTTGCATACGGTGTTT
59.452
45.455
15.32
2.54
46.41
2.83
47
48
3.003275
CAGACTGTTGCATACGGTGTTTT
59.997
43.478
15.32
0.69
46.41
2.43
48
49
3.630312
AGACTGTTGCATACGGTGTTTTT
59.370
39.130
15.32
0.00
46.41
1.94
49
50
4.817464
AGACTGTTGCATACGGTGTTTTTA
59.183
37.500
15.32
0.00
46.41
1.52
51
52
5.275494
ACTGTTGCATACGGTGTTTTTAAC
58.725
37.500
11.22
0.00
44.72
2.01
54
55
3.488363
TGCATACGGTGTTTTTAACCCT
58.512
40.909
0.00
0.00
33.88
4.34
55
56
3.253677
TGCATACGGTGTTTTTAACCCTG
59.746
43.478
0.00
0.00
33.88
4.45
56
57
3.253921
GCATACGGTGTTTTTAACCCTGT
59.746
43.478
0.00
0.00
33.88
4.00
57
58
4.614306
GCATACGGTGTTTTTAACCCTGTC
60.614
45.833
0.00
0.00
33.88
3.51
58
59
3.286329
ACGGTGTTTTTAACCCTGTCT
57.714
42.857
0.00
0.00
33.88
3.41
59
60
4.420522
ACGGTGTTTTTAACCCTGTCTA
57.579
40.909
0.00
0.00
33.88
2.59
61
62
6.112927
ACGGTGTTTTTAACCCTGTCTATA
57.887
37.500
0.00
0.00
33.88
1.31
62
63
6.168389
ACGGTGTTTTTAACCCTGTCTATAG
58.832
40.000
0.00
0.00
33.88
1.31
63
64
5.583457
CGGTGTTTTTAACCCTGTCTATAGG
59.417
44.000
0.00
0.00
37.59
2.57
64
65
6.479006
GGTGTTTTTAACCCTGTCTATAGGT
58.521
40.000
0.00
0.00
36.02
3.08
67
68
7.118825
GTGTTTTTAACCCTGTCTATAGGTGAC
59.881
40.741
0.00
0.00
36.02
3.67
68
69
5.587388
TTTAACCCTGTCTATAGGTGACG
57.413
43.478
0.00
0.00
37.26
4.35
70
71
2.376109
ACCCTGTCTATAGGTGACGTG
58.624
52.381
0.00
0.00
37.26
4.49
72
73
2.651455
CCTGTCTATAGGTGACGTGGA
58.349
52.381
0.00
0.00
37.26
4.02
73
74
3.223435
CCTGTCTATAGGTGACGTGGAT
58.777
50.000
0.00
0.00
37.26
3.41
74
75
3.004839
CCTGTCTATAGGTGACGTGGATG
59.995
52.174
0.00
0.00
37.26
3.51
75
76
2.956333
TGTCTATAGGTGACGTGGATGG
59.044
50.000
0.00
0.00
37.26
3.51
76
77
2.957006
GTCTATAGGTGACGTGGATGGT
59.043
50.000
0.00
0.00
0.00
3.55
77
78
3.383825
GTCTATAGGTGACGTGGATGGTT
59.616
47.826
0.00
0.00
0.00
3.67
78
79
4.581824
GTCTATAGGTGACGTGGATGGTTA
59.418
45.833
0.00
0.00
0.00
2.85
79
80
3.814005
ATAGGTGACGTGGATGGTTAC
57.186
47.619
0.00
0.00
0.00
2.50
80
81
1.640917
AGGTGACGTGGATGGTTACT
58.359
50.000
0.00
0.00
0.00
2.24
82
83
1.549170
GGTGACGTGGATGGTTACTCT
59.451
52.381
0.00
0.00
0.00
3.24
83
84
2.756760
GGTGACGTGGATGGTTACTCTA
59.243
50.000
0.00
0.00
0.00
2.43
84
85
3.181489
GGTGACGTGGATGGTTACTCTAG
60.181
52.174
0.00
0.00
0.00
2.43
85
86
3.693085
GTGACGTGGATGGTTACTCTAGA
59.307
47.826
0.00
0.00
0.00
2.43
87
88
5.530171
GTGACGTGGATGGTTACTCTAGATA
59.470
44.000
0.00
0.00
0.00
1.98
89
90
5.071370
ACGTGGATGGTTACTCTAGATAGG
58.929
45.833
0.00
0.00
0.00
2.57
90
91
4.082679
CGTGGATGGTTACTCTAGATAGGC
60.083
50.000
0.00
0.00
0.00
3.93
91
92
4.079970
TGGATGGTTACTCTAGATAGGCG
58.920
47.826
0.00
0.00
0.00
5.52
92
93
3.444388
GGATGGTTACTCTAGATAGGCGG
59.556
52.174
0.00
0.00
0.00
6.13
93
94
2.872732
TGGTTACTCTAGATAGGCGGG
58.127
52.381
0.00
0.00
0.00
6.13
94
95
2.176364
TGGTTACTCTAGATAGGCGGGT
59.824
50.000
0.00
0.00
0.00
5.28
95
96
2.557490
GGTTACTCTAGATAGGCGGGTG
59.443
54.545
0.00
0.00
0.00
4.61
96
97
3.220940
GTTACTCTAGATAGGCGGGTGT
58.779
50.000
0.00
0.00
0.00
4.16
98
99
1.495574
ACTCTAGATAGGCGGGTGTCT
59.504
52.381
0.00
0.00
0.00
3.41
99
100
2.091775
ACTCTAGATAGGCGGGTGTCTT
60.092
50.000
0.00
0.00
0.00
3.01
100
101
3.137913
ACTCTAGATAGGCGGGTGTCTTA
59.862
47.826
0.00
0.00
0.00
2.10
105
106
4.284178
AGATAGGCGGGTGTCTTAACTAA
58.716
43.478
0.00
0.00
0.00
2.24
106
107
4.900054
AGATAGGCGGGTGTCTTAACTAAT
59.100
41.667
0.00
0.00
0.00
1.73
107
108
3.261981
AGGCGGGTGTCTTAACTAATG
57.738
47.619
0.00
0.00
0.00
1.90
108
109
2.570302
AGGCGGGTGTCTTAACTAATGT
59.430
45.455
0.00
0.00
0.00
2.71
109
110
3.770933
AGGCGGGTGTCTTAACTAATGTA
59.229
43.478
0.00
0.00
0.00
2.29
111
112
4.497300
GCGGGTGTCTTAACTAATGTACA
58.503
43.478
0.00
0.00
0.00
2.90
112
113
5.114081
GCGGGTGTCTTAACTAATGTACAT
58.886
41.667
1.41
1.41
0.00
2.29
113
114
5.006358
GCGGGTGTCTTAACTAATGTACATG
59.994
44.000
9.63
0.00
0.00
3.21
115
116
5.296035
GGGTGTCTTAACTAATGTACATGCC
59.704
44.000
9.63
0.00
0.00
4.40
138
145
5.643777
CCCTGAGTAAATTGATGTCTCGTTT
59.356
40.000
0.00
0.00
0.00
3.60
161
168
2.781923
TGCAGTTTATTCAGCTGAGCA
58.218
42.857
17.43
17.53
32.39
4.26
162
169
3.148412
TGCAGTTTATTCAGCTGAGCAA
58.852
40.909
18.81
13.37
32.39
3.91
227
274
0.098905
CACGATCGACTGGACGTCAT
59.901
55.000
24.34
1.35
42.98
3.06
267
3064
3.742369
TGCACGCACTCACATGATATATG
59.258
43.478
0.00
0.00
0.00
1.78
354
3169
0.319211
TGCACGGACGAATTCGAACT
60.319
50.000
33.05
12.16
43.02
3.01
362
3177
2.991190
GACGAATTCGAACTGCTGGTTA
59.009
45.455
33.05
0.00
43.02
2.85
374
3189
6.238897
CGAACTGCTGGTTATAGAGATCTCTT
60.239
42.308
29.54
18.71
38.45
2.85
403
3248
3.791973
ATTGGCAAGTCAAACGACAAA
57.208
38.095
5.96
0.00
35.75
2.83
413
3258
1.088306
AAACGACAAAGGACGCACAA
58.912
45.000
0.00
0.00
35.61
3.33
416
3261
1.263217
ACGACAAAGGACGCACAAATC
59.737
47.619
0.00
0.00
35.61
2.17
424
3269
4.459331
CGCACAAATCCACCGCCG
62.459
66.667
0.00
0.00
0.00
6.46
476
3329
2.517959
CACATGGCTTTCCCTCAAAGA
58.482
47.619
0.00
0.00
44.02
2.52
523
3376
1.661480
CACACACCATGCAACCCAG
59.339
57.895
0.00
0.00
0.00
4.45
543
3403
4.994852
CCAGACCAAACATATACCATACCG
59.005
45.833
0.00
0.00
0.00
4.02
551
3411
4.820897
ACATATACCATACCGCATCAGTG
58.179
43.478
0.00
0.00
0.00
3.66
552
3412
4.283467
ACATATACCATACCGCATCAGTGT
59.717
41.667
0.00
0.00
0.00
3.55
568
3428
5.836821
TCAGTGTACTAGCTACTCCATTG
57.163
43.478
0.00
0.00
0.00
2.82
569
3429
5.506708
TCAGTGTACTAGCTACTCCATTGA
58.493
41.667
0.00
0.00
0.00
2.57
643
3525
1.270550
CATTTTGAAGTTCAGCGGCCT
59.729
47.619
5.56
0.00
0.00
5.19
671
3557
2.504032
CGGCCGGCCTTCTTATCA
59.496
61.111
41.01
0.00
0.00
2.15
750
3638
0.109689
GACAACTCAGAGACGACGGG
60.110
60.000
3.79
0.00
0.00
5.28
755
3643
2.432628
CAGAGACGACGGGGCAAC
60.433
66.667
0.00
0.00
0.00
4.17
974
3950
4.642437
CAGTTGCTGTAGAGTGGAGATAGA
59.358
45.833
0.00
0.00
0.00
1.98
1021
3997
1.298859
GGCCAAGGCTTGTGTACTCG
61.299
60.000
24.57
9.45
41.60
4.18
1202
4178
4.351938
CCAGGCGGACGACAACGA
62.352
66.667
0.00
0.00
42.66
3.85
1390
4377
5.119898
GCTGTCTTGAATCTTGATATAGCGG
59.880
44.000
0.00
0.00
0.00
5.52
1393
4380
7.445121
TGTCTTGAATCTTGATATAGCGGAAT
58.555
34.615
0.00
0.00
0.00
3.01
1448
4457
7.864379
ACATGTTACATACACGGTATAGTAAGC
59.136
37.037
0.00
0.00
40.19
3.09
1454
4463
0.041839
ACGGTATAGTAAGCGACGCG
60.042
55.000
15.18
3.53
42.76
6.01
1478
4487
4.376340
ACAAGCTTGTGGAAAAGAACAG
57.624
40.909
30.66
0.00
40.49
3.16
1489
4500
4.398044
TGGAAAAGAACAGAAGTTGTGACC
59.602
41.667
7.07
0.00
40.74
4.02
1490
4503
4.202020
GGAAAAGAACAGAAGTTGTGACCC
60.202
45.833
7.07
0.00
40.74
4.46
1503
4516
4.401202
AGTTGTGACCCGTTTTCTCAAAAT
59.599
37.500
0.00
0.00
30.50
1.82
1504
4517
4.300189
TGTGACCCGTTTTCTCAAAATG
57.700
40.909
0.00
0.00
37.18
2.32
1505
4518
3.948473
TGTGACCCGTTTTCTCAAAATGA
59.052
39.130
3.03
0.00
39.23
2.57
1506
4519
4.399618
TGTGACCCGTTTTCTCAAAATGAA
59.600
37.500
3.03
0.00
39.23
2.57
1507
4520
5.068460
TGTGACCCGTTTTCTCAAAATGAAT
59.932
36.000
3.03
0.00
39.23
2.57
1509
4522
7.142680
GTGACCCGTTTTCTCAAAATGAATAA
58.857
34.615
3.03
0.00
39.23
1.40
1553
4573
0.940991
CCCTTTGCGCAAGTTTCAGC
60.941
55.000
23.68
0.00
41.68
4.26
1558
4578
1.304254
TGCGCAAGTTTCAGCTGTTA
58.696
45.000
8.16
0.00
41.68
2.41
1567
4587
6.035975
GCAAGTTTCAGCTGTTATTGTTGTTT
59.964
34.615
14.67
0.00
0.00
2.83
1568
4588
7.221838
GCAAGTTTCAGCTGTTATTGTTGTTTA
59.778
33.333
14.67
0.00
0.00
2.01
1676
4990
2.203422
CCCGGTTTGTGAGCCCAA
60.203
61.111
0.00
0.00
0.00
4.12
1836
5974
1.478972
AGGCTCCCCTTTAGTCCCA
59.521
57.895
0.00
0.00
38.74
4.37
1898
7390
2.433145
CCTCGCGCAAGAGCAGAA
60.433
61.111
8.75
0.00
42.27
3.02
1948
7472
0.538287
GAGAGGGCTTTGTGGTGCTT
60.538
55.000
0.00
0.00
0.00
3.91
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
9
10
8.893727
GCAACAGTCTGTCTTTTATATGGTAAT
58.106
33.333
5.82
0.00
0.00
1.89
10
11
7.880713
TGCAACAGTCTGTCTTTTATATGGTAA
59.119
33.333
5.82
0.00
0.00
2.85
12
13
6.237901
TGCAACAGTCTGTCTTTTATATGGT
58.762
36.000
5.82
0.00
0.00
3.55
13
14
6.741992
TGCAACAGTCTGTCTTTTATATGG
57.258
37.500
5.82
0.00
0.00
2.74
14
15
8.058328
CGTATGCAACAGTCTGTCTTTTATATG
58.942
37.037
5.82
0.00
0.00
1.78
15
16
7.224753
CCGTATGCAACAGTCTGTCTTTTATAT
59.775
37.037
5.82
0.00
0.00
0.86
16
17
6.533723
CCGTATGCAACAGTCTGTCTTTTATA
59.466
38.462
5.82
0.00
0.00
0.98
17
18
5.351465
CCGTATGCAACAGTCTGTCTTTTAT
59.649
40.000
5.82
0.44
0.00
1.40
18
19
4.688879
CCGTATGCAACAGTCTGTCTTTTA
59.311
41.667
5.82
0.00
0.00
1.52
19
20
3.498397
CCGTATGCAACAGTCTGTCTTTT
59.502
43.478
5.82
0.00
0.00
2.27
20
21
3.067106
CCGTATGCAACAGTCTGTCTTT
58.933
45.455
5.82
0.00
0.00
2.52
21
22
2.037251
ACCGTATGCAACAGTCTGTCTT
59.963
45.455
5.82
0.00
0.00
3.01
22
23
1.618837
ACCGTATGCAACAGTCTGTCT
59.381
47.619
5.82
0.00
0.00
3.41
23
24
1.726791
CACCGTATGCAACAGTCTGTC
59.273
52.381
5.82
0.00
0.00
3.51
24
25
1.070134
ACACCGTATGCAACAGTCTGT
59.930
47.619
0.00
0.00
0.00
3.41
26
27
2.543777
AACACCGTATGCAACAGTCT
57.456
45.000
0.00
0.00
0.00
3.24
27
28
3.619233
AAAACACCGTATGCAACAGTC
57.381
42.857
0.00
0.00
0.00
3.51
28
29
5.275494
GTTAAAAACACCGTATGCAACAGT
58.725
37.500
0.00
0.00
0.00
3.55
29
30
4.677832
GGTTAAAAACACCGTATGCAACAG
59.322
41.667
0.00
0.00
0.00
3.16
30
31
4.499357
GGGTTAAAAACACCGTATGCAACA
60.499
41.667
0.00
0.00
34.79
3.33
32
33
3.890147
AGGGTTAAAAACACCGTATGCAA
59.110
39.130
0.00
0.00
34.56
4.08
33
34
3.253677
CAGGGTTAAAAACACCGTATGCA
59.746
43.478
0.00
0.00
34.56
3.96
34
35
3.253921
ACAGGGTTAAAAACACCGTATGC
59.746
43.478
0.00
0.00
34.56
3.14
35
36
4.758165
AGACAGGGTTAAAAACACCGTATG
59.242
41.667
0.00
0.00
34.56
2.39
36
37
4.976864
AGACAGGGTTAAAAACACCGTAT
58.023
39.130
0.00
0.00
34.56
3.06
37
38
4.420522
AGACAGGGTTAAAAACACCGTA
57.579
40.909
0.00
0.00
34.56
4.02
38
39
3.286329
AGACAGGGTTAAAAACACCGT
57.714
42.857
0.00
0.00
34.56
4.83
40
41
6.373495
CACCTATAGACAGGGTTAAAAACACC
59.627
42.308
0.00
0.00
40.29
4.16
41
42
7.118825
GTCACCTATAGACAGGGTTAAAAACAC
59.881
40.741
0.00
0.00
40.29
3.32
43
44
6.312180
CGTCACCTATAGACAGGGTTAAAAAC
59.688
42.308
0.00
0.00
40.29
2.43
45
46
5.481473
ACGTCACCTATAGACAGGGTTAAAA
59.519
40.000
0.00
0.00
40.29
1.52
46
47
5.018809
ACGTCACCTATAGACAGGGTTAAA
58.981
41.667
0.00
0.00
40.29
1.52
47
48
4.400251
CACGTCACCTATAGACAGGGTTAA
59.600
45.833
0.00
0.00
40.29
2.01
48
49
3.949754
CACGTCACCTATAGACAGGGTTA
59.050
47.826
0.00
0.00
40.29
2.85
49
50
2.758979
CACGTCACCTATAGACAGGGTT
59.241
50.000
0.00
0.00
40.29
4.11
51
52
1.681793
CCACGTCACCTATAGACAGGG
59.318
57.143
0.00
0.00
40.29
4.45
54
55
2.956333
CCATCCACGTCACCTATAGACA
59.044
50.000
0.00
0.00
35.77
3.41
55
56
2.957006
ACCATCCACGTCACCTATAGAC
59.043
50.000
0.00
0.00
0.00
2.59
56
57
3.308035
ACCATCCACGTCACCTATAGA
57.692
47.619
0.00
0.00
0.00
1.98
57
58
4.583489
AGTAACCATCCACGTCACCTATAG
59.417
45.833
0.00
0.00
0.00
1.31
58
59
4.539726
AGTAACCATCCACGTCACCTATA
58.460
43.478
0.00
0.00
0.00
1.31
59
60
3.371965
AGTAACCATCCACGTCACCTAT
58.628
45.455
0.00
0.00
0.00
2.57
61
62
1.549170
GAGTAACCATCCACGTCACCT
59.451
52.381
0.00
0.00
0.00
4.00
62
63
1.549170
AGAGTAACCATCCACGTCACC
59.451
52.381
0.00
0.00
0.00
4.02
63
64
3.693085
TCTAGAGTAACCATCCACGTCAC
59.307
47.826
0.00
0.00
0.00
3.67
64
65
3.959293
TCTAGAGTAACCATCCACGTCA
58.041
45.455
0.00
0.00
0.00
4.35
67
68
4.082679
GCCTATCTAGAGTAACCATCCACG
60.083
50.000
0.00
0.00
0.00
4.94
68
69
4.082679
CGCCTATCTAGAGTAACCATCCAC
60.083
50.000
0.00
0.00
0.00
4.02
70
71
3.444388
CCGCCTATCTAGAGTAACCATCC
59.556
52.174
0.00
0.00
0.00
3.51
72
73
3.181420
ACCCGCCTATCTAGAGTAACCAT
60.181
47.826
0.00
0.00
0.00
3.55
73
74
2.176364
ACCCGCCTATCTAGAGTAACCA
59.824
50.000
0.00
0.00
0.00
3.67
74
75
2.557490
CACCCGCCTATCTAGAGTAACC
59.443
54.545
0.00
0.00
0.00
2.85
75
76
3.220940
ACACCCGCCTATCTAGAGTAAC
58.779
50.000
0.00
0.00
0.00
2.50
76
77
3.137913
AGACACCCGCCTATCTAGAGTAA
59.862
47.826
0.00
0.00
0.00
2.24
77
78
2.709934
AGACACCCGCCTATCTAGAGTA
59.290
50.000
0.00
0.00
0.00
2.59
78
79
1.495574
AGACACCCGCCTATCTAGAGT
59.504
52.381
0.00
0.00
0.00
3.24
79
80
2.279935
AGACACCCGCCTATCTAGAG
57.720
55.000
0.00
0.00
0.00
2.43
80
81
2.750141
AAGACACCCGCCTATCTAGA
57.250
50.000
0.00
0.00
0.00
2.43
82
83
3.907221
AGTTAAGACACCCGCCTATCTA
58.093
45.455
0.00
0.00
0.00
1.98
83
84
2.748388
AGTTAAGACACCCGCCTATCT
58.252
47.619
0.00
0.00
0.00
1.98
84
85
4.660789
TTAGTTAAGACACCCGCCTATC
57.339
45.455
0.00
0.00
0.00
2.08
85
86
4.407945
ACATTAGTTAAGACACCCGCCTAT
59.592
41.667
0.00
0.00
0.00
2.57
87
88
2.570302
ACATTAGTTAAGACACCCGCCT
59.430
45.455
0.00
0.00
0.00
5.52
89
90
4.497300
TGTACATTAGTTAAGACACCCGC
58.503
43.478
0.00
0.00
0.00
6.13
90
91
5.006358
GCATGTACATTAGTTAAGACACCCG
59.994
44.000
5.37
0.00
0.00
5.28
91
92
5.296035
GGCATGTACATTAGTTAAGACACCC
59.704
44.000
5.37
0.00
0.00
4.61
92
93
5.296035
GGGCATGTACATTAGTTAAGACACC
59.704
44.000
5.37
0.00
0.00
4.16
93
94
6.037172
CAGGGCATGTACATTAGTTAAGACAC
59.963
42.308
5.37
0.00
0.00
3.67
94
95
6.070481
TCAGGGCATGTACATTAGTTAAGACA
60.070
38.462
5.37
0.00
0.00
3.41
95
96
6.346096
TCAGGGCATGTACATTAGTTAAGAC
58.654
40.000
5.37
0.00
0.00
3.01
96
97
6.156256
ACTCAGGGCATGTACATTAGTTAAGA
59.844
38.462
5.37
0.00
0.00
2.10
98
99
6.308015
ACTCAGGGCATGTACATTAGTTAA
57.692
37.500
5.37
0.00
0.00
2.01
99
100
5.950544
ACTCAGGGCATGTACATTAGTTA
57.049
39.130
5.37
0.00
0.00
2.24
100
101
4.844349
ACTCAGGGCATGTACATTAGTT
57.156
40.909
5.37
0.00
0.00
2.24
105
106
5.754782
TCAATTTACTCAGGGCATGTACAT
58.245
37.500
1.41
1.41
0.00
2.29
106
107
5.172687
TCAATTTACTCAGGGCATGTACA
57.827
39.130
0.00
0.00
0.00
2.90
107
108
5.590259
ACATCAATTTACTCAGGGCATGTAC
59.410
40.000
0.00
0.00
0.00
2.90
108
109
5.754782
ACATCAATTTACTCAGGGCATGTA
58.245
37.500
0.00
0.00
0.00
2.29
109
110
4.603131
ACATCAATTTACTCAGGGCATGT
58.397
39.130
0.00
0.00
0.00
3.21
111
112
5.121380
AGACATCAATTTACTCAGGGCAT
57.879
39.130
0.00
0.00
0.00
4.40
112
113
4.517285
GAGACATCAATTTACTCAGGGCA
58.483
43.478
0.00
0.00
0.00
5.36
113
114
3.557595
CGAGACATCAATTTACTCAGGGC
59.442
47.826
0.00
0.00
0.00
5.19
115
116
6.368791
TGAAACGAGACATCAATTTACTCAGG
59.631
38.462
0.00
0.00
0.00
3.86
138
145
3.376234
GCTCAGCTGAATAAACTGCATGA
59.624
43.478
18.85
0.00
37.23
3.07
227
274
4.512571
CGTGCATCATTGGATATGTTCTCA
59.487
41.667
0.00
0.00
30.87
3.27
326
3140
0.871722
TCGTCCGTGCATTTCCAAAG
59.128
50.000
0.00
0.00
0.00
2.77
354
3169
9.290988
CTAGTTAAGAGATCTCTATAACCAGCA
57.709
37.037
29.86
20.72
39.39
4.41
374
3189
6.930164
TCGTTTGACTTGCCAATTACTAGTTA
59.070
34.615
0.00
0.00
0.00
2.24
403
3248
1.671054
CGGTGGATTTGTGCGTCCT
60.671
57.895
0.00
0.00
35.49
3.85
413
3258
1.303091
GCAACTAACGGCGGTGGATT
61.303
55.000
17.29
2.58
0.00
3.01
416
3261
2.666862
TGCAACTAACGGCGGTGG
60.667
61.111
8.19
7.45
0.00
4.61
424
3269
1.918609
GACCTCGATCGTGCAACTAAC
59.081
52.381
15.94
0.00
31.75
2.34
469
3322
2.690778
CGCCGGCCCTTTCTTTGAG
61.691
63.158
23.46
0.00
0.00
3.02
523
3376
4.382291
TGCGGTATGGTATATGTTTGGTC
58.618
43.478
0.00
0.00
0.00
4.02
543
3403
3.632604
TGGAGTAGCTAGTACACTGATGC
59.367
47.826
9.60
0.00
33.55
3.91
551
3411
3.550436
GCCGTCAATGGAGTAGCTAGTAC
60.550
52.174
3.58
3.58
0.00
2.73
552
3412
2.621998
GCCGTCAATGGAGTAGCTAGTA
59.378
50.000
0.00
0.00
0.00
1.82
568
3428
1.789464
GAAGATCATGTCGATGCCGTC
59.211
52.381
0.00
0.00
33.17
4.79
569
3429
1.136891
TGAAGATCATGTCGATGCCGT
59.863
47.619
0.00
0.00
33.17
5.68
628
3510
2.669569
GCAGGCCGCTGAACTTCA
60.670
61.111
11.61
0.00
37.77
3.02
659
3541
1.369625
CGGTGTGTGATAAGAAGGCC
58.630
55.000
0.00
0.00
0.00
5.19
687
3573
2.708861
ACACTTCCACTACCACCAATCA
59.291
45.455
0.00
0.00
0.00
2.57
750
3638
3.292159
GGTTGGTGGTCGGTTGCC
61.292
66.667
0.00
0.00
0.00
4.52
755
3643
1.447838
CAGATCGGTTGGTGGTCGG
60.448
63.158
0.00
0.00
0.00
4.79
974
3950
2.393768
CGCGTGCAAGCTCAGGAAT
61.394
57.895
22.14
0.00
34.40
3.01
1014
3990
2.913578
ACCACACCGCCGAGTACA
60.914
61.111
0.00
0.00
0.00
2.90
1021
3997
3.055719
CACCATCACCACACCGCC
61.056
66.667
0.00
0.00
0.00
6.13
1051
4027
2.159310
CGAAAGAGGACGAGAGAAGCAT
60.159
50.000
0.00
0.00
0.00
3.79
1143
4119
3.568430
CCTTTCTTACAAAACGCCCTCTT
59.432
43.478
0.00
0.00
0.00
2.85
1275
4251
1.339097
ACTACACGCAAGGAGACCTT
58.661
50.000
0.00
0.00
45.88
3.50
1291
4267
2.758423
TGATGCCGCTGTAGAGAAACTA
59.242
45.455
0.00
0.00
0.00
2.24
1304
4281
2.009774
GTCCCATGTATATGATGCCGC
58.990
52.381
0.25
0.00
36.36
6.53
1437
4446
1.000736
GCCGCGTCGCTTACTATACC
61.001
60.000
16.36
0.00
0.00
2.73
1448
4457
4.724697
CAAGCTTGTGCCGCGTCG
62.725
66.667
18.65
0.00
40.80
5.12
1462
4471
5.801947
CACAACTTCTGTTCTTTTCCACAAG
59.198
40.000
0.00
0.00
35.47
3.16
1475
4484
2.413310
AAACGGGTCACAACTTCTGT
57.587
45.000
0.00
0.00
39.56
3.41
1478
4487
2.940410
TGAGAAAACGGGTCACAACTTC
59.060
45.455
0.00
0.00
0.00
3.01
1509
4522
4.518211
TGGCAAAATGCGGATGAAATTTTT
59.482
33.333
0.00
0.00
46.21
1.94
1567
4587
6.869206
AGCCCTGTTTTCTACTAGTGAATA
57.131
37.500
5.39
0.45
0.00
1.75
1568
4588
5.763876
AGCCCTGTTTTCTACTAGTGAAT
57.236
39.130
5.39
0.00
0.00
2.57
1836
5974
1.003355
CCGGTTGGTGACATGAGCT
60.003
57.895
0.00
0.00
42.32
4.09
1921
7413
3.254035
AAAGCCCTCTCCCCCTCGA
62.254
63.158
0.00
0.00
0.00
4.04
1948
7472
2.466846
TGTGCATAGGAGGTGAGCTAA
58.533
47.619
0.00
0.00
0.00
3.09
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.