Multiple sequence alignment - TraesCS1A01G393000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G393000 chr1A 100.000 2261 0 0 1 2261 559799433 559801693 0.000000e+00 4176.0
1 TraesCS1A01G393000 chr1A 78.342 1399 201 62 807 2128 559836802 559838175 0.000000e+00 811.0
2 TraesCS1A01G393000 chr1A 77.225 1146 158 59 454 1548 559841176 559842269 1.950000e-160 575.0
3 TraesCS1A01G393000 chr1A 78.114 891 150 27 1201 2075 559830368 559831229 7.160000e-145 523.0
4 TraesCS1A01G393000 chr1A 80.851 282 45 7 985 1260 559881479 559881757 1.760000e-51 213.0
5 TraesCS1A01G393000 chr1A 81.092 238 30 11 547 778 559805865 559806093 2.310000e-40 176.0
6 TraesCS1A01G393000 chr1A 83.465 127 14 5 543 666 559834959 559835081 6.600000e-21 111.0
7 TraesCS1A01G393000 chr1A 81.752 137 13 9 690 815 559836644 559836779 1.100000e-18 104.0
8 TraesCS1A01G393000 chr1D 87.514 897 90 18 452 1337 467457763 467458648 0.000000e+00 1016.0
9 TraesCS1A01G393000 chr1D 81.545 932 115 32 808 1711 467467149 467468051 0.000000e+00 715.0
10 TraesCS1A01G393000 chr1D 79.408 879 131 30 807 1658 467487334 467488189 1.950000e-160 575.0
11 TraesCS1A01G393000 chr1D 92.655 354 18 2 1 350 467457411 467457760 9.320000e-139 503.0
12 TraesCS1A01G393000 chr1D 80.477 461 52 22 454 891 467490643 467491088 3.620000e-83 318.0
13 TraesCS1A01G393000 chr1D 80.000 285 30 17 543 815 467466856 467467125 3.830000e-43 185.0
14 TraesCS1A01G393000 chr1D 79.514 288 33 19 542 815 467487035 467487310 4.960000e-42 182.0
15 TraesCS1A01G393000 chr1B 87.050 834 65 18 452 1262 645279576 645280389 0.000000e+00 902.0
16 TraesCS1A01G393000 chr1B 81.462 944 123 30 807 1711 645275506 645274576 0.000000e+00 726.0
17 TraesCS1A01G393000 chr1B 93.023 43 3 0 410 452 344910633 344910675 1.870000e-06 63.9
18 TraesCS1A01G393000 chr7D 95.455 44 2 0 2218 2261 498255604 498255561 1.120000e-08 71.3
19 TraesCS1A01G393000 chr3B 93.333 45 3 0 408 452 174449847 174449803 1.450000e-07 67.6
20 TraesCS1A01G393000 chr3B 90.385 52 3 1 401 452 556429567 556429616 1.450000e-07 67.6
21 TraesCS1A01G393000 chr5B 93.023 43 3 0 410 452 418194524 418194566 1.870000e-06 63.9
22 TraesCS1A01G393000 chr5B 92.857 42 3 0 410 451 695488042 695488001 6.740000e-06 62.1
23 TraesCS1A01G393000 chr5B 89.362 47 5 0 410 456 75817591 75817545 2.430000e-05 60.2
24 TraesCS1A01G393000 chr4B 93.023 43 3 0 410 452 591538309 591538267 1.870000e-06 63.9
25 TraesCS1A01G393000 chr3D 93.023 43 3 0 410 452 59924283 59924241 1.870000e-06 63.9
26 TraesCS1A01G393000 chr2A 91.111 45 4 0 408 452 710389420 710389464 6.740000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G393000 chr1A 559799433 559801693 2260 False 4176.000000 4176 100.000000 1 2261 1 chr1A.!!$F1 2260
1 TraesCS1A01G393000 chr1A 559830368 559842269 11901 False 424.800000 811 79.779600 454 2128 5 chr1A.!!$F4 1674
2 TraesCS1A01G393000 chr1D 467457411 467458648 1237 False 759.500000 1016 90.084500 1 1337 2 chr1D.!!$F1 1336
3 TraesCS1A01G393000 chr1D 467466856 467468051 1195 False 450.000000 715 80.772500 543 1711 2 chr1D.!!$F2 1168
4 TraesCS1A01G393000 chr1D 467487035 467491088 4053 False 358.333333 575 79.799667 454 1658 3 chr1D.!!$F3 1204
5 TraesCS1A01G393000 chr1B 645279576 645280389 813 False 902.000000 902 87.050000 452 1262 1 chr1B.!!$F2 810
6 TraesCS1A01G393000 chr1B 645274576 645275506 930 True 726.000000 726 81.462000 807 1711 1 chr1B.!!$R1 904

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 6578 0.106868 TCCCATGCATTCAGCTCAGG 60.107 55.0 0.0 0.0 45.94 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1897 7887 0.179076 TGCTCTCATACATGCGTGGG 60.179 55.0 11.36 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 4.921470 AGAACGTCAAACCAATACGATG 57.079 40.909 0.00 0.00 39.80 3.84
82 83 1.065701 ACGTCACGAGAGCATATCCAC 59.934 52.381 2.91 0.00 0.00 4.02
110 111 3.131046 TGATACACGCACTCACATGATCT 59.869 43.478 0.00 0.00 0.00 2.75
115 116 3.373130 CACGCACTCACATGATCTTGATT 59.627 43.478 15.03 0.00 0.00 2.57
124 125 9.037737 ACTCACATGATCTTGATTTTGTTTTTG 57.962 29.630 15.03 0.00 0.00 2.44
142 143 2.554370 TGAAAAGGGAACGGACGAAT 57.446 45.000 0.00 0.00 0.00 3.34
148 149 3.067684 AGGGAACGGACGAATTTGAAT 57.932 42.857 0.00 0.00 0.00 2.57
149 150 4.210724 AGGGAACGGACGAATTTGAATA 57.789 40.909 0.00 0.00 0.00 1.75
150 151 4.189231 AGGGAACGGACGAATTTGAATAG 58.811 43.478 0.00 0.00 0.00 1.73
188 189 5.942872 AGAAACACGAATTTGAATAGCTGG 58.057 37.500 0.00 0.00 0.00 4.85
200 201 0.816825 ATAGCTGGTGCAGGCATTCG 60.817 55.000 0.00 0.00 42.74 3.34
291 296 5.772825 TTCCTGGTGAAAATGTTTCAGAG 57.227 39.130 3.71 3.87 0.00 3.35
294 299 5.707298 TCCTGGTGAAAATGTTTCAGAGATC 59.293 40.000 3.71 0.00 0.00 2.75
350 355 1.207390 CATGCTGTCGAGCTTAGAGC 58.793 55.000 11.01 11.01 46.39 4.09
363 368 4.587584 GCTTAGAGCTATTACCTCCGTT 57.412 45.455 0.00 0.00 38.45 4.44
364 369 4.548494 GCTTAGAGCTATTACCTCCGTTC 58.452 47.826 0.00 0.00 38.45 3.95
365 370 4.785417 CTTAGAGCTATTACCTCCGTTCG 58.215 47.826 0.00 0.00 0.00 3.95
366 371 1.955080 AGAGCTATTACCTCCGTTCGG 59.045 52.381 4.74 4.74 0.00 4.30
367 372 0.388294 AGCTATTACCTCCGTTCGGC 59.612 55.000 6.35 0.00 0.00 5.54
368 373 0.599466 GCTATTACCTCCGTTCGGCC 60.599 60.000 6.35 0.00 0.00 6.13
369 374 0.318445 CTATTACCTCCGTTCGGCCG 60.318 60.000 22.12 22.12 0.00 6.13
371 376 1.891722 ATTACCTCCGTTCGGCCGTT 61.892 55.000 27.15 2.94 0.00 4.44
372 377 2.490993 TTACCTCCGTTCGGCCGTTC 62.491 60.000 27.15 17.78 0.00 3.95
375 380 2.676121 TCCGTTCGGCCGTTCCTA 60.676 61.111 27.15 1.01 0.00 2.94
376 381 2.216750 CTCCGTTCGGCCGTTCCTAA 62.217 60.000 27.15 8.84 0.00 2.69
377 382 1.808390 CCGTTCGGCCGTTCCTAAG 60.808 63.158 27.15 10.44 0.00 2.18
379 384 0.171007 CGTTCGGCCGTTCCTAAGTA 59.829 55.000 27.15 0.00 0.00 2.24
381 386 2.199236 GTTCGGCCGTTCCTAAGTATG 58.801 52.381 27.15 0.00 0.00 2.39
382 387 0.748450 TCGGCCGTTCCTAAGTATGG 59.252 55.000 27.15 0.00 0.00 2.74
383 388 0.748450 CGGCCGTTCCTAAGTATGGA 59.252 55.000 19.50 0.00 0.00 3.41
384 389 1.537562 CGGCCGTTCCTAAGTATGGAC 60.538 57.143 19.50 0.00 32.65 4.02
385 390 1.761198 GGCCGTTCCTAAGTATGGACT 59.239 52.381 0.00 0.00 37.59 3.85
386 391 2.961062 GGCCGTTCCTAAGTATGGACTA 59.039 50.000 0.00 0.00 33.58 2.59
387 392 3.577415 GGCCGTTCCTAAGTATGGACTAT 59.423 47.826 0.00 0.00 33.58 2.12
389 394 5.421374 GGCCGTTCCTAAGTATGGACTATAT 59.579 44.000 0.00 0.00 33.58 0.86
440 445 9.905713 ACATCTGTATGTGGTTTATAGTGAAAT 57.094 29.630 0.00 0.00 44.79 2.17
694 6311 3.774959 CTTATCGCACGCTCGGGCT 62.775 63.158 14.80 0.00 43.46 5.19
726 6345 2.281276 GGAACCCGCGGAAAGTGT 60.281 61.111 30.73 13.24 0.00 3.55
737 6356 2.828877 CGGAAAGTGTACTGGACAACA 58.171 47.619 0.00 0.00 40.66 3.33
843 6504 2.031163 GGCTCTTCAGGCACACGT 59.969 61.111 0.00 0.00 44.88 4.49
860 6521 5.808540 GCACACGTCTATATAAACCAGTCAA 59.191 40.000 0.00 0.00 0.00 3.18
896 6576 1.687563 CATCCCATGCATTCAGCTCA 58.312 50.000 0.00 0.00 45.94 4.26
898 6578 0.106868 TCCCATGCATTCAGCTCAGG 60.107 55.000 0.00 0.00 45.94 3.86
899 6579 1.734137 CCATGCATTCAGCTCAGGC 59.266 57.895 0.00 0.00 45.94 4.85
900 6580 1.035385 CCATGCATTCAGCTCAGGCA 61.035 55.000 0.00 4.34 45.94 4.75
901 6581 1.032794 CATGCATTCAGCTCAGGCAT 58.967 50.000 8.44 8.44 45.33 4.40
902 6582 1.409064 CATGCATTCAGCTCAGGCATT 59.591 47.619 11.05 0.00 42.81 3.56
964 6678 1.071228 TGAGCAGATCACTTGCTGTGT 59.929 47.619 12.27 0.00 46.27 3.72
1031 6748 4.143333 CCTACTCCGCGGTGTGGG 62.143 72.222 37.25 37.25 34.82 4.61
1063 6780 1.809209 GCACTCCTGCTTCTCTCGC 60.809 63.158 0.00 0.00 40.63 5.03
1084 6801 1.078214 TCTTTCATGGCGGCTGAGG 60.078 57.895 11.43 8.40 0.00 3.86
1227 6968 0.981183 TTGCCGGCTCTAAGAGGAAA 59.019 50.000 29.70 6.16 0.00 3.13
1279 7020 1.757682 ACTGATGTCGAGGTCTCCTC 58.242 55.000 5.79 5.79 46.44 3.71
1287 7028 1.219124 GAGGTCTCCTCGCATGCAA 59.781 57.895 19.57 0.00 41.08 4.08
1288 7029 0.391661 GAGGTCTCCTCGCATGCAAA 60.392 55.000 19.57 3.85 41.08 3.68
1300 7059 5.369685 TCGCATGCAAATTTCTCTACAAA 57.630 34.783 19.57 0.00 0.00 2.83
1326 7088 5.948162 GCATCATATACATGGGACCTGAATT 59.052 40.000 0.00 0.00 32.61 2.17
1341 7105 6.484977 GGACCTGAATTCCAAGATAGATTGAC 59.515 42.308 2.27 0.00 32.82 3.18
1371 7135 6.734104 AGCTTGTGTTCTTGTCTTGATATC 57.266 37.500 0.00 0.00 0.00 1.63
1376 7140 6.920817 TGTGTTCTTGTCTTGATATCGTAGT 58.079 36.000 0.00 0.00 0.00 2.73
1397 7161 6.773976 AGTGAAAGAGATGGTTTTGTTTCA 57.226 33.333 0.00 0.00 32.84 2.69
1398 7162 7.352079 AGTGAAAGAGATGGTTTTGTTTCAT 57.648 32.000 0.00 0.00 36.57 2.57
1406 7170 8.680903 AGAGATGGTTTTGTTTCATAAGCATAG 58.319 33.333 13.94 0.00 41.07 2.23
1493 7268 8.238481 TCAAATGTTGTGTCTTTTTCTCAAAC 57.762 30.769 0.00 0.00 0.00 2.93
1519 7295 8.318167 CGGAATAAAATTAAATTTTCGTCTGCC 58.682 33.333 0.00 0.00 41.26 4.85
1525 7301 8.432110 AAATTAAATTTTCGTCTGCCTTTTGT 57.568 26.923 0.00 0.00 0.00 2.83
1542 7318 1.846007 TGTCAACCCTTTGCACAAGT 58.154 45.000 0.00 0.00 32.17 3.16
1578 7359 5.221461 GGGATTGTCTATCATAGTCGGTGTT 60.221 44.000 0.00 0.00 34.77 3.32
1607 7388 2.254152 TTCTAGTCTCCCTGCCACAT 57.746 50.000 0.00 0.00 0.00 3.21
1712 7671 2.547299 AGCATAGCTCAGATGGCTTC 57.453 50.000 0.00 0.00 40.74 3.86
1720 7701 2.939640 GCTCAGATGGCTTCGGGTTAAA 60.940 50.000 1.04 0.00 0.00 1.52
1727 7711 2.638855 TGGCTTCGGGTTAAAGTCCTAA 59.361 45.455 0.00 0.00 0.00 2.69
1765 7751 9.995003 TGTTGCATTTTTCTAGGTTTATTTCAT 57.005 25.926 0.00 0.00 0.00 2.57
1774 7760 8.862325 TTCTAGGTTTATTTCATGCTTTCTGA 57.138 30.769 0.00 0.00 0.00 3.27
1781 7767 9.937175 GTTTATTTCATGCTTTCTGATAGTACC 57.063 33.333 0.00 0.00 0.00 3.34
1805 7791 2.267642 GCAGTATGGTGTGCCCGA 59.732 61.111 0.00 0.00 35.86 5.14
1809 7795 0.036388 AGTATGGTGTGCCCGACAAG 60.036 55.000 0.00 0.00 35.91 3.16
1813 7799 0.321210 TGGTGTGCCCGACAAGTATG 60.321 55.000 0.00 0.00 35.91 2.39
1817 7803 0.249398 GTGCCCGACAAGTATGAGGT 59.751 55.000 0.00 0.00 0.00 3.85
1822 7808 2.417379 CCCGACAAGTATGAGGTGTCTG 60.417 54.545 0.00 0.00 39.61 3.51
1824 7810 3.245797 CGACAAGTATGAGGTGTCTGTG 58.754 50.000 0.00 0.00 39.61 3.66
1838 7826 2.891580 TGTCTGTGGTGACTTAGTCTCC 59.108 50.000 22.32 22.32 43.84 3.71
1846 7834 3.133183 GGTGACTTAGTCTCCCAAGATCC 59.867 52.174 19.46 3.39 39.46 3.36
1860 7850 3.157881 CAAGATCCATCGGCTAGGTCTA 58.842 50.000 0.00 0.00 0.00 2.59
1862 7852 4.864483 AGATCCATCGGCTAGGTCTATA 57.136 45.455 0.00 0.00 0.00 1.31
1876 7866 7.396623 GGCTAGGTCTATAAGAGGTGCTTATAA 59.603 40.741 0.00 0.00 46.24 0.98
1877 7867 8.804204 GCTAGGTCTATAAGAGGTGCTTATAAA 58.196 37.037 0.00 0.00 46.24 1.40
1883 7873 9.878737 TCTATAAGAGGTGCTTATAAAGGTAGT 57.121 33.333 0.00 0.00 46.24 2.73
1884 7874 9.915629 CTATAAGAGGTGCTTATAAAGGTAGTG 57.084 37.037 0.00 0.00 46.24 2.74
1887 7877 5.484290 AGAGGTGCTTATAAAGGTAGTGTGT 59.516 40.000 0.00 0.00 0.00 3.72
1893 7883 1.504359 TAAAGGTAGTGTGTGTGCGC 58.496 50.000 0.00 0.00 0.00 6.09
1895 7885 4.072088 GGTAGTGTGTGTGCGCGC 62.072 66.667 27.26 27.26 35.99 6.86
1896 7886 4.409588 GTAGTGTGTGTGCGCGCG 62.410 66.667 28.44 28.44 40.26 6.86
1912 7902 3.323000 CGCCCACGCATGTATGAG 58.677 61.111 0.00 0.00 34.03 2.90
1915 7905 1.502163 GCCCACGCATGTATGAGAGC 61.502 60.000 2.60 0.00 34.03 4.09
1916 7906 0.179076 CCCACGCATGTATGAGAGCA 60.179 55.000 2.60 0.00 0.00 4.26
1918 7908 2.289010 CCCACGCATGTATGAGAGCATA 60.289 50.000 2.60 0.00 35.94 3.14
1939 7929 9.008965 AGCATATGTGTCTATACTCTACTTCTG 57.991 37.037 4.29 0.00 0.00 3.02
1945 7939 9.074576 TGTGTCTATACTCTACTTCTGAAAACA 57.925 33.333 0.00 0.00 0.00 2.83
1972 7966 6.707599 AACTTCTCGTTGACATAGCTAAAC 57.292 37.500 0.00 0.00 33.72 2.01
1981 7975 6.511121 CGTTGACATAGCTAAACACACACTTT 60.511 38.462 0.00 0.00 0.00 2.66
1982 7976 7.306925 CGTTGACATAGCTAAACACACACTTTA 60.307 37.037 0.00 0.00 0.00 1.85
1983 7977 7.416154 TGACATAGCTAAACACACACTTTAC 57.584 36.000 0.00 0.00 0.00 2.01
1984 7978 6.987404 TGACATAGCTAAACACACACTTTACA 59.013 34.615 0.00 0.00 0.00 2.41
1994 7988 4.334481 ACACACACTTTACAACCAAGTAGC 59.666 41.667 0.00 0.00 32.48 3.58
2013 8007 2.828520 AGCGAGAGAGAAGTCATGGAAA 59.171 45.455 0.00 0.00 0.00 3.13
2016 8010 4.981674 GCGAGAGAGAAGTCATGGAAATAG 59.018 45.833 0.00 0.00 0.00 1.73
2020 8014 3.134458 GAGAAGTCATGGAAATAGCCCG 58.866 50.000 0.00 0.00 0.00 6.13
2023 8017 1.134098 AGTCATGGAAATAGCCCGTGG 60.134 52.381 0.00 0.00 40.29 4.94
2035 8029 3.680786 CCGTGGGCGAGTCACTCA 61.681 66.667 5.45 0.00 41.33 3.41
2044 8038 1.454653 GCGAGTCACTCACCGTTTTAC 59.545 52.381 5.45 0.00 0.00 2.01
2045 8039 2.861360 GCGAGTCACTCACCGTTTTACT 60.861 50.000 5.45 0.00 0.00 2.24
2048 8042 4.083643 CGAGTCACTCACCGTTTTACTCTA 60.084 45.833 5.45 0.00 30.59 2.43
2052 8046 5.924825 GTCACTCACCGTTTTACTCTATGTT 59.075 40.000 0.00 0.00 0.00 2.71
2054 8048 5.060569 CACTCACCGTTTTACTCTATGTTCG 59.939 44.000 0.00 0.00 0.00 3.95
2063 8057 1.749634 ACTCTATGTTCGTTCCCCTCG 59.250 52.381 0.00 0.00 0.00 4.63
2077 8071 0.737715 CCCTCGCCTTCAACTCTTCG 60.738 60.000 0.00 0.00 0.00 3.79
2083 8077 2.672478 CGCCTTCAACTCTTCGACTGAT 60.672 50.000 0.00 0.00 0.00 2.90
2085 8079 3.860536 GCCTTCAACTCTTCGACTGATAC 59.139 47.826 0.00 0.00 0.00 2.24
2087 8081 3.759527 TCAACTCTTCGACTGATACCG 57.240 47.619 0.00 0.00 0.00 4.02
2092 8086 1.337071 TCTTCGACTGATACCGCCATC 59.663 52.381 0.00 0.00 0.00 3.51
2093 8087 1.067060 CTTCGACTGATACCGCCATCA 59.933 52.381 0.00 0.00 33.88 3.07
2094 8088 1.107945 TCGACTGATACCGCCATCAA 58.892 50.000 0.00 0.00 34.59 2.57
2095 8089 1.067060 TCGACTGATACCGCCATCAAG 59.933 52.381 0.00 0.00 34.59 3.02
2121 8115 0.036022 AGTTGCACCAGAGAGGCTTC 59.964 55.000 0.00 0.00 43.14 3.86
2126 8120 2.685380 CCAGAGAGGCTTCGGGGT 60.685 66.667 0.00 0.00 0.00 4.95
2127 8121 2.581354 CAGAGAGGCTTCGGGGTG 59.419 66.667 0.00 0.00 0.00 4.61
2128 8122 2.120718 AGAGAGGCTTCGGGGTGT 59.879 61.111 0.00 0.00 0.00 4.16
2130 8124 0.971447 AGAGAGGCTTCGGGGTGTAC 60.971 60.000 0.00 0.00 0.00 2.90
2131 8125 1.957765 GAGAGGCTTCGGGGTGTACC 61.958 65.000 0.00 0.00 39.11 3.34
2139 8133 4.440145 GGGGTGTACCGAGTACCA 57.560 61.111 10.45 0.00 41.60 3.25
2140 8134 2.669878 GGGGTGTACCGAGTACCAA 58.330 57.895 10.45 0.00 41.60 3.67
2141 8135 0.533951 GGGGTGTACCGAGTACCAAG 59.466 60.000 10.45 0.00 41.60 3.61
2142 8136 1.549203 GGGTGTACCGAGTACCAAGA 58.451 55.000 10.45 0.00 38.14 3.02
2144 8138 1.135170 GGTGTACCGAGTACCAAGAGC 60.135 57.143 10.45 0.86 38.14 4.09
2146 8140 0.525029 GTACCGAGTACCAAGAGCGC 60.525 60.000 0.00 0.00 33.38 5.92
2169 8773 2.278854 TGCTGGCAAAACAAGAAAAGC 58.721 42.857 0.00 0.00 0.00 3.51
2173 8777 3.871485 TGGCAAAACAAGAAAAGCACAT 58.129 36.364 0.00 0.00 0.00 3.21
2185 8791 3.831715 AAAGCACATCGCCTTACTTTC 57.168 42.857 0.00 0.00 44.04 2.62
2186 8792 2.472695 AGCACATCGCCTTACTTTCA 57.527 45.000 0.00 0.00 44.04 2.69
2214 8820 0.165295 GAGTGACACGATCGACGACA 59.835 55.000 24.34 15.27 45.77 4.35
2218 8825 2.048498 TGACACGATCGACGACAAAAG 58.952 47.619 24.34 2.36 45.77 2.27
2220 8827 2.722629 GACACGATCGACGACAAAAGAA 59.277 45.455 24.34 0.00 45.77 2.52
2221 8828 3.314553 ACACGATCGACGACAAAAGAAT 58.685 40.909 24.34 0.00 45.77 2.40
2222 8829 3.121279 ACACGATCGACGACAAAAGAATG 59.879 43.478 24.34 7.05 45.77 2.67
2226 8833 5.004440 ACGATCGACGACAAAAGAATGTATG 59.996 40.000 24.34 0.00 45.77 2.39
2227 8834 5.004440 CGATCGACGACAAAAGAATGTATGT 59.996 40.000 10.26 0.00 45.77 2.29
2228 8835 5.509605 TCGACGACAAAAGAATGTATGTG 57.490 39.130 0.00 0.00 32.57 3.21
2229 8836 4.387559 TCGACGACAAAAGAATGTATGTGG 59.612 41.667 0.00 0.00 32.57 4.17
2230 8837 4.435518 CGACGACAAAAGAATGTATGTGGG 60.436 45.833 0.00 0.00 32.57 4.61
2231 8838 3.190535 ACGACAAAAGAATGTATGTGGGC 59.809 43.478 0.00 0.00 32.57 5.36
2232 8839 3.727673 CGACAAAAGAATGTATGTGGGCG 60.728 47.826 0.00 0.00 32.57 6.13
2233 8840 3.153919 ACAAAAGAATGTATGTGGGCGT 58.846 40.909 0.00 0.00 0.00 5.68
2234 8841 3.190535 ACAAAAGAATGTATGTGGGCGTC 59.809 43.478 0.00 0.00 0.00 5.19
2235 8842 2.038387 AAGAATGTATGTGGGCGTCC 57.962 50.000 0.00 0.00 0.00 4.79
2236 8843 0.908910 AGAATGTATGTGGGCGTCCA 59.091 50.000 3.51 3.51 41.58 4.02
2237 8844 1.280710 AGAATGTATGTGGGCGTCCAA 59.719 47.619 12.16 0.90 46.04 3.53
2238 8845 1.400494 GAATGTATGTGGGCGTCCAAC 59.600 52.381 12.16 6.31 46.04 3.77
2239 8846 0.326595 ATGTATGTGGGCGTCCAACA 59.673 50.000 12.16 13.32 46.04 3.33
2240 8847 0.604243 TGTATGTGGGCGTCCAACAC 60.604 55.000 12.16 9.85 46.04 3.32
2241 8848 0.604243 GTATGTGGGCGTCCAACACA 60.604 55.000 12.16 4.98 46.04 3.72
2242 8849 0.321210 TATGTGGGCGTCCAACACAG 60.321 55.000 12.16 0.00 46.82 3.66
2244 8851 2.110213 TGGGCGTCCAACACAGAC 59.890 61.111 6.10 0.00 40.73 3.51
2252 8859 1.145156 CCAACACAGACGGGACACA 59.855 57.895 0.00 0.00 0.00 3.72
2253 8860 0.462937 CCAACACAGACGGGACACAA 60.463 55.000 0.00 0.00 0.00 3.33
2255 8862 0.814010 AACACAGACGGGACACAAGC 60.814 55.000 0.00 0.00 0.00 4.01
2256 8863 1.961277 CACAGACGGGACACAAGCC 60.961 63.158 0.00 0.00 0.00 4.35
2257 8864 2.140792 ACAGACGGGACACAAGCCT 61.141 57.895 0.00 0.00 0.00 4.58
2258 8865 1.669115 CAGACGGGACACAAGCCTG 60.669 63.158 0.00 0.00 37.80 4.85
2259 8866 3.050275 GACGGGACACAAGCCTGC 61.050 66.667 0.00 0.00 35.09 4.85
2260 8867 4.643387 ACGGGACACAAGCCTGCC 62.643 66.667 0.00 0.00 35.09 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 2.102438 CGTCCATGCATGTGCGAGT 61.102 57.895 25.92 0.00 45.83 4.18
82 83 1.202348 TGAGTGCGTGTATCACTGGAG 59.798 52.381 0.00 0.00 44.09 3.86
110 111 7.361286 CCGTTCCCTTTTCAAAAACAAAATCAA 60.361 33.333 0.00 0.00 0.00 2.57
115 116 4.930405 GTCCGTTCCCTTTTCAAAAACAAA 59.070 37.500 0.00 0.00 0.00 2.83
124 125 3.251487 TCAAATTCGTCCGTTCCCTTTTC 59.749 43.478 0.00 0.00 0.00 2.29
188 189 1.750399 ATGGACCGAATGCCTGCAC 60.750 57.895 0.00 0.00 0.00 4.57
200 201 3.002791 CGGATGCATACATACATGGACC 58.997 50.000 10.18 0.00 36.88 4.46
291 296 5.877012 TGAGTTGCCAATTAGTTCAGAGATC 59.123 40.000 0.00 0.00 0.00 2.75
294 299 5.947228 TTGAGTTGCCAATTAGTTCAGAG 57.053 39.130 0.00 0.00 0.00 3.35
350 355 0.318445 CGGCCGAACGGAGGTAATAG 60.318 60.000 24.07 0.00 37.50 1.73
352 357 1.891722 AACGGCCGAACGGAGGTAAT 61.892 55.000 35.90 0.00 38.39 1.89
353 358 2.490993 GAACGGCCGAACGGAGGTAA 62.491 60.000 35.90 0.00 38.39 2.85
354 359 2.990967 AACGGCCGAACGGAGGTA 60.991 61.111 35.90 0.00 38.39 3.08
355 360 4.368543 GAACGGCCGAACGGAGGT 62.369 66.667 35.90 2.60 38.39 3.85
357 362 2.216750 TTAGGAACGGCCGAACGGAG 62.217 60.000 35.90 11.79 43.43 4.63
358 363 2.216750 CTTAGGAACGGCCGAACGGA 62.217 60.000 35.90 11.22 43.43 4.69
359 364 1.808390 CTTAGGAACGGCCGAACGG 60.808 63.158 35.90 10.80 43.43 4.44
360 365 0.171007 TACTTAGGAACGGCCGAACG 59.829 55.000 35.90 14.34 43.43 3.95
361 366 2.199236 CATACTTAGGAACGGCCGAAC 58.801 52.381 35.90 23.74 43.43 3.95
362 367 1.137479 CCATACTTAGGAACGGCCGAA 59.863 52.381 35.90 14.71 43.43 4.30
363 368 0.748450 CCATACTTAGGAACGGCCGA 59.252 55.000 35.90 5.52 43.43 5.54
364 369 0.748450 TCCATACTTAGGAACGGCCG 59.252 55.000 26.86 26.86 43.43 6.13
365 370 1.761198 AGTCCATACTTAGGAACGGCC 59.239 52.381 0.00 0.00 36.80 6.13
366 371 4.868314 ATAGTCCATACTTAGGAACGGC 57.132 45.455 0.00 0.00 36.80 5.68
371 376 9.784376 AGGCAAATATATAGTCCATACTTAGGA 57.216 33.333 0.00 0.00 37.15 2.94
439 444 9.841880 GACGGAAAGCTATCTCTTTTTAAAAAT 57.158 29.630 13.55 2.17 36.50 1.82
440 445 8.013378 CGACGGAAAGCTATCTCTTTTTAAAAA 58.987 33.333 12.62 12.62 36.50 1.94
441 446 7.385752 TCGACGGAAAGCTATCTCTTTTTAAAA 59.614 33.333 0.00 0.00 36.50 1.52
443 448 6.392354 TCGACGGAAAGCTATCTCTTTTTAA 58.608 36.000 0.00 0.00 36.50 1.52
446 451 4.451629 TCGACGGAAAGCTATCTCTTTT 57.548 40.909 0.00 0.00 36.50 2.27
448 453 3.735514 GCTTCGACGGAAAGCTATCTCTT 60.736 47.826 12.58 0.00 0.00 2.85
449 454 2.223618 GCTTCGACGGAAAGCTATCTCT 60.224 50.000 12.58 0.00 0.00 3.10
450 455 2.121009 GCTTCGACGGAAAGCTATCTC 58.879 52.381 12.58 0.00 0.00 2.75
490 4525 3.006756 ATGACCTGTGCCGACCTCG 62.007 63.158 0.00 0.00 39.44 4.63
505 4568 6.751514 ATATGTTAGGTTTTCGTTGCATGA 57.248 33.333 0.00 0.00 0.00 3.07
541 4604 2.222886 GAGTAGCTAGCACTGATCGGA 58.777 52.381 18.83 0.00 0.00 4.55
666 4739 4.587189 GCGATAAGACGGCCGGCT 62.587 66.667 32.76 32.76 32.88 5.52
694 6311 0.178975 GTTCCACCAATCCACCACCA 60.179 55.000 0.00 0.00 0.00 4.17
726 6345 3.460103 GTCGTTTTCCTGTTGTCCAGTA 58.540 45.455 0.00 0.00 39.74 2.74
737 6356 1.342174 TCGTTGCTAGGTCGTTTTCCT 59.658 47.619 0.00 0.00 38.91 3.36
739 6358 2.401351 AGTCGTTGCTAGGTCGTTTTC 58.599 47.619 0.00 0.00 0.00 2.29
801 6429 3.181473 ACGAAACTGGTGTAGCACTACAA 60.181 43.478 11.92 0.00 46.33 2.41
843 6504 6.611642 AGCTGGAGTTGACTGGTTTATATAGA 59.388 38.462 0.00 0.00 0.00 1.98
894 6574 2.352127 CGCTCGATATCTCAATGCCTGA 60.352 50.000 0.34 0.00 0.00 3.86
895 6575 1.991264 CGCTCGATATCTCAATGCCTG 59.009 52.381 0.34 0.00 0.00 4.85
896 6576 1.615883 ACGCTCGATATCTCAATGCCT 59.384 47.619 0.34 0.00 0.00 4.75
898 6578 2.666026 TGACGCTCGATATCTCAATGC 58.334 47.619 0.34 0.00 0.00 3.56
899 6579 5.060693 CAGATTGACGCTCGATATCTCAATG 59.939 44.000 17.28 6.44 32.85 2.82
900 6580 5.159925 CAGATTGACGCTCGATATCTCAAT 58.840 41.667 13.93 13.93 34.89 2.57
901 6581 4.540824 CAGATTGACGCTCGATATCTCAA 58.459 43.478 6.76 6.76 0.00 3.02
902 6582 3.610349 GCAGATTGACGCTCGATATCTCA 60.610 47.826 0.34 0.00 0.00 3.27
963 6677 3.197983 AGGAACCTGTACCTGCAATCTAC 59.802 47.826 0.00 0.00 34.99 2.59
964 6678 3.197766 CAGGAACCTGTACCTGCAATCTA 59.802 47.826 12.21 0.00 45.30 1.98
1015 6732 4.143333 CCCCACACCGCGGAGTAG 62.143 72.222 35.90 23.71 0.00 2.57
1047 6764 2.355193 GGGCGAGAGAAGCAGGAGT 61.355 63.158 0.00 0.00 36.08 3.85
1063 6780 2.117156 CAGCCGCCATGAAAGAGGG 61.117 63.158 0.00 0.00 0.00 4.30
1084 6801 2.573340 CCATTTCCGGCCAGTTGC 59.427 61.111 2.24 0.00 40.16 4.17
1086 6803 0.395724 GATCCCATTTCCGGCCAGTT 60.396 55.000 2.24 0.00 0.00 3.16
1087 6804 1.227383 GATCCCATTTCCGGCCAGT 59.773 57.895 2.24 0.00 0.00 4.00
1096 6813 1.765314 CTCTCTCCCGTGATCCCATTT 59.235 52.381 0.00 0.00 0.00 2.32
1137 6857 1.758122 AAAATGCCCTCCCGCCATC 60.758 57.895 0.00 0.00 0.00 3.51
1279 7020 4.560035 CCTTTGTAGAGAAATTTGCATGCG 59.440 41.667 14.09 0.00 0.00 4.73
1287 7028 9.851686 TGTATATGATGCCTTTGTAGAGAAATT 57.148 29.630 0.00 0.00 0.00 1.82
1300 7059 3.265221 CAGGTCCCATGTATATGATGCCT 59.735 47.826 0.25 2.53 36.36 4.75
1326 7088 5.740224 GCTTGATCGGTCAATCTATCTTGGA 60.740 44.000 12.35 0.00 43.08 3.53
1341 7105 2.549754 ACAAGAACACAAGCTTGATCGG 59.450 45.455 32.50 22.02 43.11 4.18
1350 7114 6.712241 ACGATATCAAGACAAGAACACAAG 57.288 37.500 3.12 0.00 0.00 3.16
1371 7135 5.924475 ACAAAACCATCTCTTTCACTACG 57.076 39.130 0.00 0.00 0.00 3.51
1376 7140 7.867403 GCTTATGAAACAAAACCATCTCTTTCA 59.133 33.333 0.00 0.00 33.43 2.69
1419 7183 5.889853 TCTCCTTCTACACGGTGTATGTAAT 59.110 40.000 20.35 0.00 31.66 1.89
1431 7200 0.243907 TGCTGCGTCTCCTTCTACAC 59.756 55.000 0.00 0.00 0.00 2.90
1433 7202 0.798771 CGTGCTGCGTCTCCTTCTAC 60.799 60.000 0.00 0.00 35.54 2.59
1437 7206 2.088674 AACTCGTGCTGCGTCTCCTT 62.089 55.000 0.00 0.00 42.13 3.36
1452 7224 9.677567 ACAACATTTGATATGTTACACAAACTC 57.322 29.630 1.03 0.00 39.94 3.01
1493 7268 8.318167 GGCAGACGAAAATTTAATTTTATTCCG 58.682 33.333 14.62 15.11 42.15 4.30
1507 7283 4.359706 GTTGACAAAAGGCAGACGAAAAT 58.640 39.130 0.00 0.00 0.00 1.82
1519 7295 3.244033 TGTGCAAAGGGTTGACAAAAG 57.756 42.857 0.00 0.00 36.83 2.27
1525 7301 2.828520 TGAAACTTGTGCAAAGGGTTGA 59.171 40.909 0.00 0.00 36.83 3.18
1542 7318 8.089625 TGATAGACAATCCCATAGAACTGAAA 57.910 34.615 0.00 0.00 33.22 2.69
1578 7359 6.828785 GGCAGGGAGACTAGAATAAATTTTGA 59.171 38.462 0.00 0.00 0.00 2.69
1590 7371 2.503356 AGAAATGTGGCAGGGAGACTAG 59.497 50.000 0.00 0.00 0.00 2.57
1629 7410 2.795329 AGCTGACCACGGAATGAAAAT 58.205 42.857 0.00 0.00 0.00 1.82
1673 7631 5.666462 TGCTCAGTCTGTAGTTAACAAACA 58.334 37.500 8.61 10.54 37.74 2.83
1711 7670 4.347583 TCCAAGTTTAGGACTTTAACCCGA 59.652 41.667 0.00 0.00 46.34 5.14
1712 7671 4.644498 TCCAAGTTTAGGACTTTAACCCG 58.356 43.478 0.00 0.00 46.34 5.28
1734 7718 9.830975 ATAAACCTAGAAAAATGCAACAACTTT 57.169 25.926 0.00 0.00 0.00 2.66
1738 7722 9.823647 TGAAATAAACCTAGAAAAATGCAACAA 57.176 25.926 0.00 0.00 0.00 2.83
1741 7725 8.934825 GCATGAAATAAACCTAGAAAAATGCAA 58.065 29.630 0.00 0.00 36.44 4.08
1742 7726 8.313292 AGCATGAAATAAACCTAGAAAAATGCA 58.687 29.630 0.00 0.00 38.33 3.96
1765 7751 5.734720 CTGAAAGGGTACTATCAGAAAGCA 58.265 41.667 10.28 0.00 41.38 3.91
1771 7757 4.744795 ACTGCTGAAAGGGTACTATCAG 57.255 45.455 0.00 11.05 41.69 2.90
1774 7760 4.969359 ACCATACTGCTGAAAGGGTACTAT 59.031 41.667 0.00 0.00 0.00 2.12
1776 7762 3.055094 CACCATACTGCTGAAAGGGTACT 60.055 47.826 0.00 0.00 0.00 2.73
1781 7767 1.470098 GCACACCATACTGCTGAAAGG 59.530 52.381 0.00 0.00 0.00 3.11
1805 7791 2.972713 ACCACAGACACCTCATACTTGT 59.027 45.455 0.00 0.00 0.00 3.16
1809 7795 2.563179 AGTCACCACAGACACCTCATAC 59.437 50.000 0.00 0.00 40.98 2.39
1813 7799 2.628657 ACTAAGTCACCACAGACACCTC 59.371 50.000 0.00 0.00 40.98 3.85
1817 7803 2.891580 GGAGACTAAGTCACCACAGACA 59.108 50.000 0.00 0.00 41.69 3.41
1822 7808 3.320673 CTTGGGAGACTAAGTCACCAC 57.679 52.381 0.00 0.00 43.38 4.16
1838 7826 1.001406 GACCTAGCCGATGGATCTTGG 59.999 57.143 0.00 0.00 0.00 3.61
1846 7834 4.156922 CACCTCTTATAGACCTAGCCGATG 59.843 50.000 0.00 0.00 0.00 3.84
1860 7850 8.204836 CACACTACCTTTATAAGCACCTCTTAT 58.795 37.037 3.15 3.15 46.66 1.73
1862 7852 6.013639 ACACACTACCTTTATAAGCACCTCTT 60.014 38.462 0.00 0.00 38.79 2.85
1874 7864 1.504359 GCGCACACACACTACCTTTA 58.496 50.000 0.30 0.00 0.00 1.85
1876 7866 1.954146 CGCGCACACACACTACCTT 60.954 57.895 8.75 0.00 0.00 3.50
1877 7867 2.355837 CGCGCACACACACTACCT 60.356 61.111 8.75 0.00 0.00 3.08
1895 7885 1.217585 CTCTCATACATGCGTGGGCG 61.218 60.000 11.36 0.00 44.10 6.13
1896 7886 1.502163 GCTCTCATACATGCGTGGGC 61.502 60.000 11.36 0.00 40.52 5.36
1897 7887 0.179076 TGCTCTCATACATGCGTGGG 60.179 55.000 11.36 0.00 0.00 4.61
1898 7888 1.875009 ATGCTCTCATACATGCGTGG 58.125 50.000 11.36 0.00 0.00 4.94
1899 7889 3.992427 ACATATGCTCTCATACATGCGTG 59.008 43.478 3.82 3.82 37.94 5.34
1900 7890 3.992427 CACATATGCTCTCATACATGCGT 59.008 43.478 1.58 0.00 37.94 5.24
1901 7891 3.992427 ACACATATGCTCTCATACATGCG 59.008 43.478 1.58 0.00 37.94 4.73
1912 7902 9.226606 AGAAGTAGAGTATAGACACATATGCTC 57.773 37.037 1.58 4.30 42.15 4.26
1953 7947 4.921515 GTGTGTTTAGCTATGTCAACGAGA 59.078 41.667 0.00 0.00 0.00 4.04
1956 7950 4.447724 AGTGTGTGTTTAGCTATGTCAACG 59.552 41.667 0.00 0.00 0.00 4.10
1963 7957 6.768861 TGGTTGTAAAGTGTGTGTTTAGCTAT 59.231 34.615 0.00 0.00 0.00 2.97
1966 7960 5.238006 TGGTTGTAAAGTGTGTGTTTAGC 57.762 39.130 0.00 0.00 0.00 3.09
1972 7966 4.551990 CGCTACTTGGTTGTAAAGTGTGTG 60.552 45.833 0.00 0.00 38.32 3.82
1981 7975 3.682696 TCTCTCTCGCTACTTGGTTGTA 58.317 45.455 0.00 0.00 0.00 2.41
1982 7976 2.515854 TCTCTCTCGCTACTTGGTTGT 58.484 47.619 0.00 0.00 0.00 3.32
1983 7977 3.057174 ACTTCTCTCTCGCTACTTGGTTG 60.057 47.826 0.00 0.00 0.00 3.77
1984 7978 3.158676 ACTTCTCTCTCGCTACTTGGTT 58.841 45.455 0.00 0.00 0.00 3.67
1994 7988 4.981674 GCTATTTCCATGACTTCTCTCTCG 59.018 45.833 0.00 0.00 0.00 4.04
2028 8022 5.467705 ACATAGAGTAAAACGGTGAGTGAC 58.532 41.667 0.00 0.00 0.00 3.67
2035 8029 4.925646 GGAACGAACATAGAGTAAAACGGT 59.074 41.667 0.00 0.00 0.00 4.83
2044 8038 1.536284 GCGAGGGGAACGAACATAGAG 60.536 57.143 0.00 0.00 0.00 2.43
2045 8039 0.458669 GCGAGGGGAACGAACATAGA 59.541 55.000 0.00 0.00 0.00 1.98
2048 8042 1.838073 AAGGCGAGGGGAACGAACAT 61.838 55.000 0.00 0.00 0.00 2.71
2052 8046 2.211410 TTGAAGGCGAGGGGAACGA 61.211 57.895 0.00 0.00 0.00 3.85
2054 8048 0.673956 GAGTTGAAGGCGAGGGGAAC 60.674 60.000 0.00 0.00 0.00 3.62
2063 8057 2.440539 TCAGTCGAAGAGTTGAAGGC 57.559 50.000 0.00 0.00 38.70 4.35
2077 8071 2.890808 TCTTGATGGCGGTATCAGTC 57.109 50.000 0.00 0.00 38.25 3.51
2108 8102 2.685380 CCCCGAAGCCTCTCTGGT 60.685 66.667 0.00 0.00 38.35 4.00
2110 8104 0.970937 TACACCCCGAAGCCTCTCTG 60.971 60.000 0.00 0.00 0.00 3.35
2111 8105 0.971447 GTACACCCCGAAGCCTCTCT 60.971 60.000 0.00 0.00 0.00 3.10
2126 8120 0.806868 CGCTCTTGGTACTCGGTACA 59.193 55.000 13.76 1.43 40.41 2.90
2127 8121 0.525029 GCGCTCTTGGTACTCGGTAC 60.525 60.000 0.00 5.84 38.19 3.34
2128 8122 0.961857 TGCGCTCTTGGTACTCGGTA 60.962 55.000 9.73 0.00 0.00 4.02
2130 8124 1.805945 GTGCGCTCTTGGTACTCGG 60.806 63.158 9.73 0.00 0.00 4.63
2131 8125 1.073216 CAGTGCGCTCTTGGTACTCG 61.073 60.000 9.70 0.00 0.00 4.18
2133 8127 1.374758 GCAGTGCGCTCTTGGTACT 60.375 57.895 9.70 0.00 37.77 2.73
2144 8138 1.210545 CTTGTTTTGCCAGCAGTGCG 61.211 55.000 10.00 4.69 0.00 5.34
2146 8140 2.582728 TTCTTGTTTTGCCAGCAGTG 57.417 45.000 0.00 0.00 0.00 3.66
2169 8773 3.684305 TGTGATGAAAGTAAGGCGATGTG 59.316 43.478 0.00 0.00 0.00 3.21
2173 8777 3.325870 CTGTGTGATGAAAGTAAGGCGA 58.674 45.455 0.00 0.00 0.00 5.54
2185 8791 1.000274 TCGTGTCACTCCTGTGTGATG 60.000 52.381 5.46 0.78 46.77 3.07
2186 8792 1.328279 TCGTGTCACTCCTGTGTGAT 58.672 50.000 5.46 0.00 46.77 3.06
2214 8820 2.752903 GGACGCCCACATACATTCTTTT 59.247 45.455 0.00 0.00 0.00 2.27
2218 8825 1.400494 GTTGGACGCCCACATACATTC 59.600 52.381 0.00 0.00 43.41 2.67
2220 8827 0.326595 TGTTGGACGCCCACATACAT 59.673 50.000 0.00 0.00 43.41 2.29
2221 8828 0.604243 GTGTTGGACGCCCACATACA 60.604 55.000 0.00 0.00 43.41 2.29
2222 8829 0.604243 TGTGTTGGACGCCCACATAC 60.604 55.000 0.00 0.00 43.41 2.39
2226 8833 2.110213 TCTGTGTTGGACGCCCAC 59.890 61.111 0.00 0.00 43.41 4.61
2227 8834 2.110213 GTCTGTGTTGGACGCCCA 59.890 61.111 0.00 0.00 41.64 5.36
2232 8839 0.878961 GTGTCCCGTCTGTGTTGGAC 60.879 60.000 0.00 0.00 45.99 4.02
2233 8840 1.331399 TGTGTCCCGTCTGTGTTGGA 61.331 55.000 0.00 0.00 0.00 3.53
2234 8841 0.462937 TTGTGTCCCGTCTGTGTTGG 60.463 55.000 0.00 0.00 0.00 3.77
2235 8842 0.937304 CTTGTGTCCCGTCTGTGTTG 59.063 55.000 0.00 0.00 0.00 3.33
2236 8843 0.814010 GCTTGTGTCCCGTCTGTGTT 60.814 55.000 0.00 0.00 0.00 3.32
2237 8844 1.227556 GCTTGTGTCCCGTCTGTGT 60.228 57.895 0.00 0.00 0.00 3.72
2238 8845 1.961277 GGCTTGTGTCCCGTCTGTG 60.961 63.158 0.00 0.00 0.00 3.66
2239 8846 2.140792 AGGCTTGTGTCCCGTCTGT 61.141 57.895 0.00 0.00 0.00 3.41
2240 8847 1.669115 CAGGCTTGTGTCCCGTCTG 60.669 63.158 0.00 0.00 0.00 3.51
2241 8848 2.743718 CAGGCTTGTGTCCCGTCT 59.256 61.111 0.00 0.00 0.00 4.18
2242 8849 3.050275 GCAGGCTTGTGTCCCGTC 61.050 66.667 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.