Multiple sequence alignment - TraesCS1A01G392900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G392900 chr1A 100.000 2306 0 0 1 2306 559721474 559723779 0.000000e+00 4259.0
1 TraesCS1A01G392900 chr6D 93.913 805 49 0 1 805 212748670 212749474 0.000000e+00 1216.0
2 TraesCS1A01G392900 chr6D 93.898 803 49 0 1 803 216116161 216116963 0.000000e+00 1212.0
3 TraesCS1A01G392900 chr6D 93.898 803 48 1 1 803 214754180 214753379 0.000000e+00 1210.0
4 TraesCS1A01G392900 chr7D 93.898 803 49 0 1 803 337595062 337594260 0.000000e+00 1212.0
5 TraesCS1A01G392900 chr7D 81.395 129 11 6 2168 2289 500927730 500927852 2.440000e-15 93.5
6 TraesCS1A01G392900 chr2D 93.905 804 48 1 1 803 268178542 268177739 0.000000e+00 1212.0
7 TraesCS1A01G392900 chr2D 80.451 133 13 6 2168 2293 511055308 511055182 3.160000e-14 89.8
8 TraesCS1A01G392900 chrUn 93.898 803 48 1 2 803 106184320 106183518 0.000000e+00 1210.0
9 TraesCS1A01G392900 chrUn 79.699 133 14 7 2168 2293 358002996 358003122 1.470000e-12 84.2
10 TraesCS1A01G392900 chr5D 93.029 832 52 4 1 832 187864578 187865403 0.000000e+00 1210.0
11 TraesCS1A01G392900 chr4D 93.898 803 48 1 1 803 213298646 213297845 0.000000e+00 1210.0
12 TraesCS1A01G392900 chr4D 89.744 78 7 1 2221 2297 467969777 467969854 5.240000e-17 99.0
13 TraesCS1A01G392900 chr1D 93.665 805 51 0 1 805 191023771 191022967 0.000000e+00 1205.0
14 TraesCS1A01G392900 chr1D 89.171 748 55 12 1161 1903 467442632 467443358 0.000000e+00 909.0
15 TraesCS1A01G392900 chr1D 79.688 128 13 5 2168 2288 126185068 126185189 1.900000e-11 80.5
16 TraesCS1A01G392900 chr1B 88.500 1000 96 16 801 1795 645244213 645245198 0.000000e+00 1192.0
17 TraesCS1A01G392900 chr6B 82.456 114 11 5 2178 2288 551780710 551780817 8.770000e-15 91.6
18 TraesCS1A01G392900 chr6B 79.699 133 14 5 2168 2293 2655166 2655040 1.470000e-12 84.2
19 TraesCS1A01G392900 chr3A 79.699 133 14 7 2168 2293 737423956 737423830 1.470000e-12 84.2
20 TraesCS1A01G392900 chr7A 85.185 81 6 2 2183 2263 696747024 696746950 6.830000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G392900 chr1A 559721474 559723779 2305 False 4259 4259 100.000 1 2306 1 chr1A.!!$F1 2305
1 TraesCS1A01G392900 chr6D 212748670 212749474 804 False 1216 1216 93.913 1 805 1 chr6D.!!$F1 804
2 TraesCS1A01G392900 chr6D 216116161 216116963 802 False 1212 1212 93.898 1 803 1 chr6D.!!$F2 802
3 TraesCS1A01G392900 chr6D 214753379 214754180 801 True 1210 1210 93.898 1 803 1 chr6D.!!$R1 802
4 TraesCS1A01G392900 chr7D 337594260 337595062 802 True 1212 1212 93.898 1 803 1 chr7D.!!$R1 802
5 TraesCS1A01G392900 chr2D 268177739 268178542 803 True 1212 1212 93.905 1 803 1 chr2D.!!$R1 802
6 TraesCS1A01G392900 chrUn 106183518 106184320 802 True 1210 1210 93.898 2 803 1 chrUn.!!$R1 801
7 TraesCS1A01G392900 chr5D 187864578 187865403 825 False 1210 1210 93.029 1 832 1 chr5D.!!$F1 831
8 TraesCS1A01G392900 chr4D 213297845 213298646 801 True 1210 1210 93.898 1 803 1 chr4D.!!$R1 802
9 TraesCS1A01G392900 chr1D 191022967 191023771 804 True 1205 1205 93.665 1 805 1 chr1D.!!$R1 804
10 TraesCS1A01G392900 chr1D 467442632 467443358 726 False 909 909 89.171 1161 1903 1 chr1D.!!$F2 742
11 TraesCS1A01G392900 chr1B 645244213 645245198 985 False 1192 1192 88.500 801 1795 1 chr1B.!!$F1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.472471 GAAGGTGGGGTTCTGTGACA 59.528 55.0 0.0 0.0 0.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2053 2060 0.029834 CTGGCTGCATTGTTATCCGC 59.97 55.0 0.5 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 0.944311 TCCTGCGAGCAAACGAAGAC 60.944 55.000 7.38 0.00 40.98 3.01
135 136 9.219603 CTGGATATTGCGAATATAAGAGGAAAA 57.780 33.333 0.00 0.00 34.31 2.29
165 166 0.472471 GAAGGTGGGGTTCTGTGACA 59.528 55.000 0.00 0.00 0.00 3.58
204 205 3.515071 ACACAAATGAAGTACGCGAAC 57.485 42.857 15.93 0.00 0.00 3.95
240 241 8.192110 TGGCGAACTTTTAATCTAAACAAAACT 58.808 29.630 0.00 0.00 0.00 2.66
255 256 9.207042 CTAAACAAAACTCAAAGTCTAAACGAC 57.793 33.333 0.00 0.00 43.17 4.34
288 289 6.413325 GGGCTATATATATGGAGGAAGAGGGA 60.413 46.154 10.09 0.00 0.00 4.20
290 291 7.423156 GGCTATATATATGGAGGAAGAGGGAGA 60.423 44.444 10.09 0.00 0.00 3.71
355 358 4.141287 CTCTTGTTTCCCCACACATACAA 58.859 43.478 0.00 0.00 0.00 2.41
370 373 7.971168 CCACACATACAAACTCTAAAAACAACA 59.029 33.333 0.00 0.00 0.00 3.33
406 409 2.238646 TCGAAAATACATGGTCCTGGCT 59.761 45.455 0.00 0.00 0.00 4.75
422 425 4.473196 TCCTGGCTCAATAATAAGGTGACA 59.527 41.667 0.00 0.00 0.00 3.58
428 431 5.297776 GCTCAATAATAAGGTGACACAGCAT 59.702 40.000 8.08 0.00 33.95 3.79
540 543 5.707298 TCCTGAAATCATCACTTGAAACTCC 59.293 40.000 0.00 0.00 38.03 3.85
549 552 4.258543 TCACTTGAAACTCCGTTCTTGTT 58.741 39.130 0.00 0.00 0.00 2.83
582 585 2.290832 TGCCATCAACTCCATGCTTGTA 60.291 45.455 0.00 0.00 0.00 2.41
586 589 5.185454 CCATCAACTCCATGCTTGTACTTA 58.815 41.667 0.00 0.00 0.00 2.24
610 613 4.996793 TCCAATGTTCATCCTTCTCCAAA 58.003 39.130 0.00 0.00 0.00 3.28
630 633 5.245075 CCAAACTAGGCCCTTCATTTGTAAA 59.755 40.000 0.00 0.00 0.00 2.01
726 729 6.826741 AGTACCTGATAATTTAATTGGCGTGT 59.173 34.615 0.00 0.00 0.00 4.49
751 754 4.142138 CGAGCTCTAGTAATTGGTCCAGTT 60.142 45.833 12.85 4.85 0.00 3.16
759 762 8.202137 TCTAGTAATTGGTCCAGTTTGTATAGC 58.798 37.037 4.77 0.00 0.00 2.97
799 802 6.823689 GTGTAACAATGGTATTGATGTCCTCT 59.176 38.462 8.41 0.00 36.32 3.69
808 811 2.479566 TGATGTCCTCTTCAAGCCAC 57.520 50.000 0.00 0.00 0.00 5.01
829 832 6.473455 GCCACTAATGCAATTAATGAACAGAC 59.527 38.462 0.00 0.00 38.21 3.51
929 932 3.806625 AAAGCACACAACTCTTGCATT 57.193 38.095 0.00 0.00 38.81 3.56
934 937 3.243367 GCACACAACTCTTGCATTACCAA 60.243 43.478 0.00 0.00 36.22 3.67
940 943 8.367156 ACACAACTCTTGCATTACCAATTTTAT 58.633 29.630 0.00 0.00 0.00 1.40
941 944 9.853555 CACAACTCTTGCATTACCAATTTTATA 57.146 29.630 0.00 0.00 0.00 0.98
966 969 4.813750 ATTGAAAAATCCAAGAGCCCTG 57.186 40.909 0.00 0.00 0.00 4.45
972 975 0.835941 ATCCAAGAGCCCTGCTAGTG 59.164 55.000 0.00 0.00 39.88 2.74
977 980 2.681778 AGCCCTGCTAGTGTCGCT 60.682 61.111 0.00 0.00 36.99 4.93
988 991 3.860536 GCTAGTGTCGCTAAGAGAAAAGG 59.139 47.826 0.00 0.00 0.00 3.11
993 996 6.562518 AGTGTCGCTAAGAGAAAAGGTATAC 58.437 40.000 0.00 0.00 0.00 1.47
1038 1041 3.491447 GCATAATGTTGGTCCTTGCCATC 60.491 47.826 0.00 0.00 38.48 3.51
1042 1045 1.280710 TGTTGGTCCTTGCCATCGTAT 59.719 47.619 0.00 0.00 38.48 3.06
1055 1058 4.164294 GCCATCGTATCAGTAACCGTATC 58.836 47.826 0.00 0.00 0.00 2.24
1072 1075 1.150567 ATCTGCTGACGAATGCGAGC 61.151 55.000 0.00 0.00 41.64 5.03
1152 1155 1.588239 AACTCATCCCATCAGAGGCA 58.412 50.000 0.00 0.00 33.76 4.75
1253 1256 2.285977 GGAGAAGGTTGTGTTTGTCGT 58.714 47.619 0.00 0.00 0.00 4.34
1314 1317 7.593825 AGTGTGGAAGTAAGTGAAATTAATGC 58.406 34.615 0.00 0.00 0.00 3.56
1339 1342 9.612620 GCTATGTTAGCCATATTCAAACAATAC 57.387 33.333 0.00 0.00 45.95 1.89
1461 1464 6.604171 ACACCATTCCTAATCATGCTTGATA 58.396 36.000 14.86 0.45 41.83 2.15
1463 1469 8.385491 ACACCATTCCTAATCATGCTTGATATA 58.615 33.333 14.86 9.05 41.83 0.86
1552 1559 6.753913 AAGATCTATAATGTGAGGGCTTGA 57.246 37.500 0.00 0.00 0.00 3.02
1569 1576 4.225208 GCTTGAGCTGAGAAATGTTTGTC 58.775 43.478 0.00 0.00 38.21 3.18
1665 1672 1.418637 GGTGTAGGTTCTCCCACACAA 59.581 52.381 15.18 0.00 42.35 3.33
1701 1708 5.747197 GCTGAGATTTGTAATTTGCTCCATG 59.253 40.000 0.00 0.00 0.00 3.66
1744 1751 5.006552 GCTGAGAGCACAATTGAGAAGATAC 59.993 44.000 13.59 0.00 41.89 2.24
1802 1809 7.319646 GCATGTTTACAAAAGACCCATCATAA 58.680 34.615 0.00 0.00 0.00 1.90
1809 1816 6.068010 ACAAAAGACCCATCATAAGTCACAA 58.932 36.000 0.00 0.00 32.82 3.33
1833 1840 4.769345 AAAAACCCACCATGTTTGATGT 57.231 36.364 0.00 0.00 36.14 3.06
1843 1850 5.682422 CACCATGTTTGATGTATTGCATACG 59.318 40.000 0.00 0.00 38.06 3.06
1844 1851 5.588246 ACCATGTTTGATGTATTGCATACGA 59.412 36.000 0.00 0.00 38.06 3.43
1846 1853 7.140705 CCATGTTTGATGTATTGCATACGAAT 58.859 34.615 0.00 0.00 38.06 3.34
1847 1854 7.113825 CCATGTTTGATGTATTGCATACGAATG 59.886 37.037 0.00 0.00 38.06 2.67
1875 1882 8.994429 TTAAATTGTTGTGAAAAAGCTTCTCA 57.006 26.923 0.00 2.99 0.00 3.27
1884 1891 4.949856 TGAAAAAGCTTCTCAAGTGGACTT 59.050 37.500 0.00 0.00 36.45 3.01
1898 1905 1.578206 GGACTTTGCTTCTGGCGTCC 61.578 60.000 0.00 0.00 45.43 4.79
1899 1906 0.884704 GACTTTGCTTCTGGCGTCCA 60.885 55.000 0.00 0.00 45.43 4.02
1900 1907 1.166531 ACTTTGCTTCTGGCGTCCAC 61.167 55.000 0.00 0.00 45.43 4.02
1901 1908 0.886490 CTTTGCTTCTGGCGTCCACT 60.886 55.000 0.00 0.00 45.43 4.00
1902 1909 1.165907 TTTGCTTCTGGCGTCCACTG 61.166 55.000 0.00 0.00 45.43 3.66
1903 1910 2.031163 GCTTCTGGCGTCCACTGT 59.969 61.111 0.00 0.00 0.00 3.55
1904 1911 2.320587 GCTTCTGGCGTCCACTGTG 61.321 63.158 0.00 0.00 0.00 3.66
1905 1912 1.367471 CTTCTGGCGTCCACTGTGA 59.633 57.895 9.86 0.00 0.00 3.58
1906 1913 0.036952 CTTCTGGCGTCCACTGTGAT 60.037 55.000 9.86 0.00 0.00 3.06
1907 1914 0.320683 TTCTGGCGTCCACTGTGATG 60.321 55.000 9.86 2.54 0.00 3.07
1908 1915 1.004560 CTGGCGTCCACTGTGATGT 60.005 57.895 9.86 0.00 0.00 3.06
1909 1916 1.005037 TGGCGTCCACTGTGATGTC 60.005 57.895 9.86 3.50 0.00 3.06
1910 1917 1.005037 GGCGTCCACTGTGATGTCA 60.005 57.895 9.86 0.00 0.00 3.58
1911 1918 1.016130 GGCGTCCACTGTGATGTCAG 61.016 60.000 9.86 0.00 40.80 3.51
1912 1919 0.038251 GCGTCCACTGTGATGTCAGA 60.038 55.000 9.86 0.00 38.63 3.27
1913 1920 1.605457 GCGTCCACTGTGATGTCAGAA 60.605 52.381 9.86 0.00 38.63 3.02
1914 1921 2.061773 CGTCCACTGTGATGTCAGAAC 58.938 52.381 9.86 0.00 38.63 3.01
1915 1922 2.417719 GTCCACTGTGATGTCAGAACC 58.582 52.381 9.86 0.00 38.63 3.62
1916 1923 2.037772 GTCCACTGTGATGTCAGAACCT 59.962 50.000 9.86 0.00 38.63 3.50
1917 1924 2.300152 TCCACTGTGATGTCAGAACCTC 59.700 50.000 9.86 0.00 38.63 3.85
1918 1925 2.301296 CCACTGTGATGTCAGAACCTCT 59.699 50.000 9.86 0.00 38.63 3.69
1919 1926 3.511540 CCACTGTGATGTCAGAACCTCTA 59.488 47.826 9.86 0.00 38.63 2.43
1920 1927 4.381398 CCACTGTGATGTCAGAACCTCTAG 60.381 50.000 9.86 0.00 38.63 2.43
1921 1928 3.194542 ACTGTGATGTCAGAACCTCTAGC 59.805 47.826 0.65 0.00 38.63 3.42
1922 1929 3.435275 TGTGATGTCAGAACCTCTAGCT 58.565 45.455 0.00 0.00 0.00 3.32
1923 1930 3.445450 TGTGATGTCAGAACCTCTAGCTC 59.555 47.826 0.00 0.00 0.00 4.09
1924 1931 3.445450 GTGATGTCAGAACCTCTAGCTCA 59.555 47.826 0.00 0.00 0.00 4.26
1925 1932 4.081972 GTGATGTCAGAACCTCTAGCTCAA 60.082 45.833 0.00 0.00 0.00 3.02
1926 1933 3.944055 TGTCAGAACCTCTAGCTCAAC 57.056 47.619 0.00 0.00 0.00 3.18
1927 1934 3.230976 TGTCAGAACCTCTAGCTCAACA 58.769 45.455 0.00 0.00 0.00 3.33
1928 1935 3.834813 TGTCAGAACCTCTAGCTCAACAT 59.165 43.478 0.00 0.00 0.00 2.71
1929 1936 4.284490 TGTCAGAACCTCTAGCTCAACATT 59.716 41.667 0.00 0.00 0.00 2.71
1930 1937 5.480422 TGTCAGAACCTCTAGCTCAACATTA 59.520 40.000 0.00 0.00 0.00 1.90
1931 1938 6.155221 TGTCAGAACCTCTAGCTCAACATTAT 59.845 38.462 0.00 0.00 0.00 1.28
1932 1939 7.342026 TGTCAGAACCTCTAGCTCAACATTATA 59.658 37.037 0.00 0.00 0.00 0.98
1933 1940 8.364142 GTCAGAACCTCTAGCTCAACATTATAT 58.636 37.037 0.00 0.00 0.00 0.86
1934 1941 8.928448 TCAGAACCTCTAGCTCAACATTATATT 58.072 33.333 0.00 0.00 0.00 1.28
1935 1942 9.553064 CAGAACCTCTAGCTCAACATTATATTT 57.447 33.333 0.00 0.00 0.00 1.40
1959 1966 4.698583 CTAGTATAGTACCCCGTGCATC 57.301 50.000 0.00 0.00 32.85 3.91
1960 1967 1.884579 AGTATAGTACCCCGTGCATCG 59.115 52.381 0.00 0.00 39.52 3.84
1961 1968 0.599558 TATAGTACCCCGTGCATCGC 59.400 55.000 0.00 0.00 38.35 4.58
1962 1969 1.113517 ATAGTACCCCGTGCATCGCT 61.114 55.000 0.00 0.00 38.35 4.93
1963 1970 0.466007 TAGTACCCCGTGCATCGCTA 60.466 55.000 0.00 0.00 38.35 4.26
1964 1971 1.113517 AGTACCCCGTGCATCGCTAT 61.114 55.000 0.00 0.00 38.35 2.97
1965 1972 0.944311 GTACCCCGTGCATCGCTATG 60.944 60.000 0.00 0.00 38.35 2.23
1966 1973 1.396607 TACCCCGTGCATCGCTATGT 61.397 55.000 0.00 0.00 38.35 2.29
1967 1974 1.365999 CCCCGTGCATCGCTATGTA 59.634 57.895 0.00 0.00 38.35 2.29
1968 1975 0.037326 CCCCGTGCATCGCTATGTAT 60.037 55.000 0.00 0.00 38.35 2.29
1969 1976 1.350193 CCCGTGCATCGCTATGTATC 58.650 55.000 0.00 0.00 38.35 2.24
1970 1977 0.984829 CCGTGCATCGCTATGTATCG 59.015 55.000 0.00 2.97 38.35 2.92
1971 1978 1.401018 CCGTGCATCGCTATGTATCGA 60.401 52.381 10.73 0.00 39.17 3.59
1972 1979 2.519963 CGTGCATCGCTATGTATCGAT 58.480 47.619 2.16 2.16 45.11 3.59
1973 1980 2.527887 CGTGCATCGCTATGTATCGATC 59.472 50.000 0.00 0.00 42.73 3.69
1974 1981 3.501950 GTGCATCGCTATGTATCGATCA 58.498 45.455 0.00 0.03 42.73 2.92
1975 1982 4.108336 GTGCATCGCTATGTATCGATCAT 58.892 43.478 0.00 8.29 42.73 2.45
1976 1983 5.273944 GTGCATCGCTATGTATCGATCATA 58.726 41.667 0.00 9.00 42.73 2.15
1977 1984 5.172232 GTGCATCGCTATGTATCGATCATAC 59.828 44.000 0.00 0.00 42.73 2.39
2030 2037 9.520204 AATTTCTTAATCAAAATAGATGCGGTG 57.480 29.630 0.00 0.00 0.00 4.94
2031 2038 7.624360 TTCTTAATCAAAATAGATGCGGTGT 57.376 32.000 0.00 0.00 0.00 4.16
2032 2039 8.725405 TTCTTAATCAAAATAGATGCGGTGTA 57.275 30.769 0.00 0.00 0.00 2.90
2033 2040 8.725405 TCTTAATCAAAATAGATGCGGTGTAA 57.275 30.769 0.00 0.00 0.00 2.41
2034 2041 8.826710 TCTTAATCAAAATAGATGCGGTGTAAG 58.173 33.333 0.00 0.00 0.00 2.34
2035 2042 6.377327 AATCAAAATAGATGCGGTGTAAGG 57.623 37.500 0.00 0.00 0.00 2.69
2036 2043 3.625764 TCAAAATAGATGCGGTGTAAGGC 59.374 43.478 0.00 0.00 0.00 4.35
2037 2044 2.256117 AATAGATGCGGTGTAAGGCC 57.744 50.000 0.00 0.00 0.00 5.19
2038 2045 1.424638 ATAGATGCGGTGTAAGGCCT 58.575 50.000 0.00 0.00 0.00 5.19
2039 2046 0.464036 TAGATGCGGTGTAAGGCCTG 59.536 55.000 5.69 0.00 0.00 4.85
2040 2047 1.220749 GATGCGGTGTAAGGCCTGA 59.779 57.895 5.69 0.00 0.00 3.86
2041 2048 0.392461 GATGCGGTGTAAGGCCTGAA 60.392 55.000 5.69 0.00 0.00 3.02
2042 2049 0.676782 ATGCGGTGTAAGGCCTGAAC 60.677 55.000 5.69 9.05 0.00 3.18
2043 2050 2.038837 GCGGTGTAAGGCCTGAACC 61.039 63.158 5.69 13.99 0.00 3.62
2044 2051 1.376812 CGGTGTAAGGCCTGAACCC 60.377 63.158 20.63 16.26 0.00 4.11
2045 2052 1.376812 GGTGTAAGGCCTGAACCCG 60.377 63.158 5.69 0.00 0.00 5.28
2046 2053 1.376812 GTGTAAGGCCTGAACCCGG 60.377 63.158 5.69 0.00 0.00 5.73
2047 2054 1.536907 TGTAAGGCCTGAACCCGGA 60.537 57.895 5.69 0.00 0.00 5.14
2048 2055 1.078637 GTAAGGCCTGAACCCGGAC 60.079 63.158 5.69 0.00 0.00 4.79
2049 2056 1.536907 TAAGGCCTGAACCCGGACA 60.537 57.895 5.69 0.00 29.42 4.02
2050 2057 1.550130 TAAGGCCTGAACCCGGACAG 61.550 60.000 5.69 9.66 29.42 3.51
2051 2058 3.319198 GGCCTGAACCCGGACAGA 61.319 66.667 19.46 0.00 36.38 3.41
2052 2059 2.747686 GCCTGAACCCGGACAGAA 59.252 61.111 19.46 0.00 36.38 3.02
2053 2060 1.376037 GCCTGAACCCGGACAGAAG 60.376 63.158 19.46 8.95 36.38 2.85
2054 2061 1.376037 CCTGAACCCGGACAGAAGC 60.376 63.158 19.46 0.00 36.38 3.86
2055 2062 1.738099 CTGAACCCGGACAGAAGCG 60.738 63.158 0.73 0.00 36.38 4.68
2056 2063 2.434359 GAACCCGGACAGAAGCGG 60.434 66.667 0.73 0.00 0.00 5.52
2057 2064 2.920912 AACCCGGACAGAAGCGGA 60.921 61.111 0.73 0.00 0.00 5.54
2058 2065 2.240162 GAACCCGGACAGAAGCGGAT 62.240 60.000 0.73 0.00 0.00 4.18
2059 2066 0.974010 AACCCGGACAGAAGCGGATA 60.974 55.000 0.73 0.00 0.00 2.59
2060 2067 0.974010 ACCCGGACAGAAGCGGATAA 60.974 55.000 0.73 0.00 0.00 1.75
2061 2068 0.529992 CCCGGACAGAAGCGGATAAC 60.530 60.000 0.73 0.00 0.00 1.89
2062 2069 0.174845 CCGGACAGAAGCGGATAACA 59.825 55.000 0.00 0.00 0.00 2.41
2063 2070 1.404986 CCGGACAGAAGCGGATAACAA 60.405 52.381 0.00 0.00 0.00 2.83
2064 2071 2.550978 CGGACAGAAGCGGATAACAAT 58.449 47.619 0.00 0.00 0.00 2.71
2065 2072 2.285220 CGGACAGAAGCGGATAACAATG 59.715 50.000 0.00 0.00 0.00 2.82
2066 2073 2.032178 GGACAGAAGCGGATAACAATGC 59.968 50.000 0.00 0.00 0.00 3.56
2067 2074 2.677836 GACAGAAGCGGATAACAATGCA 59.322 45.455 0.00 0.00 0.00 3.96
2068 2075 2.679837 ACAGAAGCGGATAACAATGCAG 59.320 45.455 0.00 0.00 0.00 4.41
2069 2076 1.672881 AGAAGCGGATAACAATGCAGC 59.327 47.619 0.00 0.00 0.00 5.25
2070 2077 0.740737 AAGCGGATAACAATGCAGCC 59.259 50.000 0.00 0.00 0.00 4.85
2071 2078 0.394216 AGCGGATAACAATGCAGCCA 60.394 50.000 0.00 0.00 0.00 4.75
2072 2079 0.029834 GCGGATAACAATGCAGCCAG 59.970 55.000 0.00 0.00 0.00 4.85
2073 2080 0.029834 CGGATAACAATGCAGCCAGC 59.970 55.000 0.00 0.00 45.96 4.85
2074 2081 0.386838 GGATAACAATGCAGCCAGCC 59.613 55.000 0.00 0.00 44.83 4.85
2075 2082 0.029834 GATAACAATGCAGCCAGCCG 59.970 55.000 0.00 0.00 44.83 5.52
2076 2083 1.386525 ATAACAATGCAGCCAGCCGG 61.387 55.000 0.00 0.00 44.83 6.13
2077 2084 2.476852 TAACAATGCAGCCAGCCGGA 62.477 55.000 5.05 0.00 44.83 5.14
2078 2085 3.818787 CAATGCAGCCAGCCGGAC 61.819 66.667 5.05 0.00 44.83 4.79
2079 2086 4.039092 AATGCAGCCAGCCGGACT 62.039 61.111 5.05 0.00 44.83 3.85
2080 2087 3.574074 AATGCAGCCAGCCGGACTT 62.574 57.895 5.05 0.00 44.83 3.01
2081 2088 2.196997 AATGCAGCCAGCCGGACTTA 62.197 55.000 5.05 0.00 44.83 2.24
2082 2089 1.987807 ATGCAGCCAGCCGGACTTAT 61.988 55.000 5.05 0.00 44.83 1.73
2083 2090 1.889573 GCAGCCAGCCGGACTTATC 60.890 63.158 5.05 0.00 37.23 1.75
2084 2091 1.522092 CAGCCAGCCGGACTTATCA 59.478 57.895 5.05 0.00 0.00 2.15
2085 2092 0.107456 CAGCCAGCCGGACTTATCAT 59.893 55.000 5.05 0.00 0.00 2.45
2086 2093 1.344438 CAGCCAGCCGGACTTATCATA 59.656 52.381 5.05 0.00 0.00 2.15
2087 2094 2.047061 AGCCAGCCGGACTTATCATAA 58.953 47.619 5.05 0.00 0.00 1.90
2088 2095 2.438021 AGCCAGCCGGACTTATCATAAA 59.562 45.455 5.05 0.00 0.00 1.40
2089 2096 3.118038 AGCCAGCCGGACTTATCATAAAA 60.118 43.478 5.05 0.00 0.00 1.52
2090 2097 3.003378 GCCAGCCGGACTTATCATAAAAC 59.997 47.826 5.05 0.00 0.00 2.43
2091 2098 3.564225 CCAGCCGGACTTATCATAAAACC 59.436 47.826 5.05 0.00 0.00 3.27
2092 2099 4.451900 CAGCCGGACTTATCATAAAACCT 58.548 43.478 5.05 0.00 0.00 3.50
2093 2100 4.273480 CAGCCGGACTTATCATAAAACCTG 59.727 45.833 5.05 0.00 0.00 4.00
2094 2101 3.564225 GCCGGACTTATCATAAAACCTGG 59.436 47.826 5.05 0.00 0.00 4.45
2095 2102 3.564225 CCGGACTTATCATAAAACCTGGC 59.436 47.826 0.00 0.00 0.00 4.85
2096 2103 4.196193 CGGACTTATCATAAAACCTGGCA 58.804 43.478 0.00 0.00 0.00 4.92
2097 2104 4.821805 CGGACTTATCATAAAACCTGGCAT 59.178 41.667 0.00 0.00 0.00 4.40
2098 2105 5.299279 CGGACTTATCATAAAACCTGGCATT 59.701 40.000 0.00 0.00 0.00 3.56
2099 2106 6.485313 CGGACTTATCATAAAACCTGGCATTA 59.515 38.462 0.00 0.00 0.00 1.90
2100 2107 7.174946 CGGACTTATCATAAAACCTGGCATTAT 59.825 37.037 0.00 0.00 0.00 1.28
2101 2108 8.860088 GGACTTATCATAAAACCTGGCATTATT 58.140 33.333 0.00 0.00 0.00 1.40
2108 2115 8.691797 TCATAAAACCTGGCATTATTTTAGACC 58.308 33.333 12.99 0.00 31.86 3.85
2109 2116 5.932619 AAACCTGGCATTATTTTAGACCC 57.067 39.130 0.00 0.00 0.00 4.46
2110 2117 4.601406 ACCTGGCATTATTTTAGACCCA 57.399 40.909 0.00 0.00 0.00 4.51
2111 2118 4.941713 ACCTGGCATTATTTTAGACCCAA 58.058 39.130 0.00 0.00 0.00 4.12
2112 2119 4.956075 ACCTGGCATTATTTTAGACCCAAG 59.044 41.667 0.00 0.00 0.00 3.61
2113 2120 4.202151 CCTGGCATTATTTTAGACCCAAGC 60.202 45.833 0.00 0.00 0.00 4.01
2114 2121 3.380004 TGGCATTATTTTAGACCCAAGCG 59.620 43.478 0.00 0.00 0.00 4.68
2115 2122 3.372060 GCATTATTTTAGACCCAAGCGC 58.628 45.455 0.00 0.00 0.00 5.92
2116 2123 3.617669 CATTATTTTAGACCCAAGCGCG 58.382 45.455 0.00 0.00 0.00 6.86
2117 2124 2.676632 TATTTTAGACCCAAGCGCGA 57.323 45.000 12.10 0.00 0.00 5.87
2118 2125 1.084289 ATTTTAGACCCAAGCGCGAC 58.916 50.000 12.10 0.04 0.00 5.19
2119 2126 0.952010 TTTTAGACCCAAGCGCGACC 60.952 55.000 12.10 0.00 0.00 4.79
2120 2127 2.102109 TTTAGACCCAAGCGCGACCA 62.102 55.000 12.10 0.00 0.00 4.02
2121 2128 1.895020 TTAGACCCAAGCGCGACCAT 61.895 55.000 12.10 0.00 0.00 3.55
2122 2129 1.038681 TAGACCCAAGCGCGACCATA 61.039 55.000 12.10 0.00 0.00 2.74
2123 2130 1.448893 GACCCAAGCGCGACCATAA 60.449 57.895 12.10 0.00 0.00 1.90
2124 2131 0.814010 GACCCAAGCGCGACCATAAT 60.814 55.000 12.10 0.00 0.00 1.28
2125 2132 0.393808 ACCCAAGCGCGACCATAATT 60.394 50.000 12.10 0.00 0.00 1.40
2126 2133 1.134340 ACCCAAGCGCGACCATAATTA 60.134 47.619 12.10 0.00 0.00 1.40
2127 2134 1.531149 CCCAAGCGCGACCATAATTAG 59.469 52.381 12.10 0.00 0.00 1.73
2128 2135 2.210116 CCAAGCGCGACCATAATTAGT 58.790 47.619 12.10 0.00 0.00 2.24
2129 2136 2.612212 CCAAGCGCGACCATAATTAGTT 59.388 45.455 12.10 0.00 0.00 2.24
2130 2137 3.546020 CCAAGCGCGACCATAATTAGTTG 60.546 47.826 12.10 0.00 0.00 3.16
2131 2138 2.901249 AGCGCGACCATAATTAGTTGT 58.099 42.857 12.10 0.00 0.00 3.32
2132 2139 3.267483 AGCGCGACCATAATTAGTTGTT 58.733 40.909 12.10 0.00 0.00 2.83
2133 2140 4.435425 AGCGCGACCATAATTAGTTGTTA 58.565 39.130 12.10 0.00 0.00 2.41
2134 2141 4.506654 AGCGCGACCATAATTAGTTGTTAG 59.493 41.667 12.10 0.00 0.00 2.34
2135 2142 4.318546 GCGCGACCATAATTAGTTGTTAGG 60.319 45.833 12.10 0.00 0.00 2.69
2136 2143 4.318546 CGCGACCATAATTAGTTGTTAGGC 60.319 45.833 0.00 0.00 0.00 3.93
2137 2144 4.573201 GCGACCATAATTAGTTGTTAGGCA 59.427 41.667 0.00 0.00 0.00 4.75
2138 2145 5.065474 GCGACCATAATTAGTTGTTAGGCAA 59.935 40.000 0.00 0.00 34.16 4.52
2139 2146 6.403855 GCGACCATAATTAGTTGTTAGGCAAA 60.404 38.462 0.00 0.00 39.03 3.68
2140 2147 7.531716 CGACCATAATTAGTTGTTAGGCAAAA 58.468 34.615 0.00 0.00 39.03 2.44
2141 2148 8.188139 CGACCATAATTAGTTGTTAGGCAAAAT 58.812 33.333 0.00 0.00 39.03 1.82
2142 2149 9.869757 GACCATAATTAGTTGTTAGGCAAAATT 57.130 29.630 0.00 0.00 39.03 1.82
2147 2154 7.889589 ATTAGTTGTTAGGCAAAATTTCTGC 57.110 32.000 13.59 13.59 39.03 4.26
2148 2155 5.275067 AGTTGTTAGGCAAAATTTCTGCA 57.725 34.783 19.78 0.00 41.78 4.41
2149 2156 5.669477 AGTTGTTAGGCAAAATTTCTGCAA 58.331 33.333 19.78 9.32 41.78 4.08
2150 2157 6.112058 AGTTGTTAGGCAAAATTTCTGCAAA 58.888 32.000 19.78 13.42 41.78 3.68
2151 2158 6.597280 AGTTGTTAGGCAAAATTTCTGCAAAA 59.403 30.769 19.78 13.18 41.78 2.44
2152 2159 6.356757 TGTTAGGCAAAATTTCTGCAAAAC 57.643 33.333 19.78 19.96 41.78 2.43
2153 2160 5.006165 TGTTAGGCAAAATTTCTGCAAAACG 59.994 36.000 19.78 0.00 41.78 3.60
2154 2161 2.287644 AGGCAAAATTTCTGCAAAACGC 59.712 40.909 19.78 7.68 41.78 4.84
2168 2175 4.794169 GCAAAACGCAGAAAAAGATAGGA 58.206 39.130 0.00 0.00 41.79 2.94
2169 2176 5.219633 GCAAAACGCAGAAAAAGATAGGAA 58.780 37.500 0.00 0.00 41.79 3.36
2170 2177 5.689961 GCAAAACGCAGAAAAAGATAGGAAA 59.310 36.000 0.00 0.00 41.79 3.13
2171 2178 6.200097 GCAAAACGCAGAAAAAGATAGGAAAA 59.800 34.615 0.00 0.00 41.79 2.29
2172 2179 7.567590 GCAAAACGCAGAAAAAGATAGGAAAAG 60.568 37.037 0.00 0.00 41.79 2.27
2173 2180 5.048153 ACGCAGAAAAAGATAGGAAAAGC 57.952 39.130 0.00 0.00 0.00 3.51
2174 2181 4.082733 ACGCAGAAAAAGATAGGAAAAGCC 60.083 41.667 0.00 0.00 0.00 4.35
2204 2211 2.755836 TTTTGAAGCACTGACGAAGC 57.244 45.000 0.00 0.00 0.00 3.86
2205 2212 1.662517 TTTGAAGCACTGACGAAGCA 58.337 45.000 0.00 0.00 0.00 3.91
2206 2213 1.882912 TTGAAGCACTGACGAAGCAT 58.117 45.000 0.00 0.00 0.00 3.79
2207 2214 1.882912 TGAAGCACTGACGAAGCATT 58.117 45.000 0.00 0.00 0.00 3.56
2208 2215 3.038788 TGAAGCACTGACGAAGCATTA 57.961 42.857 0.00 0.00 0.00 1.90
2209 2216 3.599343 TGAAGCACTGACGAAGCATTAT 58.401 40.909 0.00 0.00 0.00 1.28
2210 2217 4.002982 TGAAGCACTGACGAAGCATTATT 58.997 39.130 0.00 0.00 0.00 1.40
2211 2218 5.175127 TGAAGCACTGACGAAGCATTATTA 58.825 37.500 0.00 0.00 0.00 0.98
2212 2219 5.817296 TGAAGCACTGACGAAGCATTATTAT 59.183 36.000 0.00 0.00 0.00 1.28
2213 2220 6.316140 TGAAGCACTGACGAAGCATTATTATT 59.684 34.615 0.00 0.00 0.00 1.40
2214 2221 6.052840 AGCACTGACGAAGCATTATTATTG 57.947 37.500 0.00 0.00 0.00 1.90
2215 2222 5.586243 AGCACTGACGAAGCATTATTATTGT 59.414 36.000 0.00 0.00 0.00 2.71
2216 2223 6.094048 AGCACTGACGAAGCATTATTATTGTT 59.906 34.615 0.00 0.00 0.00 2.83
2217 2224 6.195244 GCACTGACGAAGCATTATTATTGTTG 59.805 38.462 0.00 0.00 0.00 3.33
2218 2225 7.243487 CACTGACGAAGCATTATTATTGTTGT 58.757 34.615 0.00 0.00 0.00 3.32
2219 2226 7.426456 CACTGACGAAGCATTATTATTGTTGTC 59.574 37.037 0.00 0.00 0.00 3.18
2220 2227 6.474364 TGACGAAGCATTATTATTGTTGTCG 58.526 36.000 0.00 0.00 0.00 4.35
2221 2228 5.806286 ACGAAGCATTATTATTGTTGTCGG 58.194 37.500 0.00 0.00 0.00 4.79
2222 2229 4.670621 CGAAGCATTATTATTGTTGTCGGC 59.329 41.667 0.00 0.00 0.00 5.54
2223 2230 4.209452 AGCATTATTATTGTTGTCGGCG 57.791 40.909 0.00 0.00 0.00 6.46
2224 2231 3.003275 AGCATTATTATTGTTGTCGGCGG 59.997 43.478 7.21 0.00 0.00 6.13
2225 2232 3.002862 GCATTATTATTGTTGTCGGCGGA 59.997 43.478 7.21 0.00 0.00 5.54
2226 2233 4.772434 CATTATTATTGTTGTCGGCGGAG 58.228 43.478 7.21 0.00 0.00 4.63
2227 2234 2.396590 ATTATTGTTGTCGGCGGAGT 57.603 45.000 7.21 0.00 0.00 3.85
2228 2235 1.717194 TTATTGTTGTCGGCGGAGTC 58.283 50.000 7.21 0.00 0.00 3.36
2229 2236 0.604073 TATTGTTGTCGGCGGAGTCA 59.396 50.000 7.21 0.00 0.00 3.41
2230 2237 0.250124 ATTGTTGTCGGCGGAGTCAA 60.250 50.000 7.21 8.85 0.00 3.18
2231 2238 0.250124 TTGTTGTCGGCGGAGTCAAT 60.250 50.000 7.21 0.00 0.00 2.57
2232 2239 0.604073 TGTTGTCGGCGGAGTCAATA 59.396 50.000 7.21 3.94 0.00 1.90
2233 2240 1.001068 TGTTGTCGGCGGAGTCAATAA 59.999 47.619 7.21 0.00 0.00 1.40
2234 2241 2.070783 GTTGTCGGCGGAGTCAATAAA 58.929 47.619 7.21 0.00 0.00 1.40
2235 2242 2.459060 TGTCGGCGGAGTCAATAAAA 57.541 45.000 7.21 0.00 0.00 1.52
2236 2243 2.980568 TGTCGGCGGAGTCAATAAAAT 58.019 42.857 7.21 0.00 0.00 1.82
2237 2244 3.340034 TGTCGGCGGAGTCAATAAAATT 58.660 40.909 7.21 0.00 0.00 1.82
2238 2245 3.754323 TGTCGGCGGAGTCAATAAAATTT 59.246 39.130 7.21 0.00 0.00 1.82
2239 2246 4.095610 GTCGGCGGAGTCAATAAAATTTG 58.904 43.478 7.21 0.00 0.00 2.32
2240 2247 3.127895 TCGGCGGAGTCAATAAAATTTGG 59.872 43.478 7.21 0.00 0.00 3.28
2241 2248 3.119637 CGGCGGAGTCAATAAAATTTGGT 60.120 43.478 0.00 0.00 0.00 3.67
2242 2249 4.617298 CGGCGGAGTCAATAAAATTTGGTT 60.617 41.667 0.00 0.00 0.00 3.67
2243 2250 4.862574 GGCGGAGTCAATAAAATTTGGTTC 59.137 41.667 0.00 0.00 0.00 3.62
2244 2251 5.336451 GGCGGAGTCAATAAAATTTGGTTCT 60.336 40.000 0.00 0.00 0.00 3.01
2245 2252 6.156519 GCGGAGTCAATAAAATTTGGTTCTT 58.843 36.000 0.00 0.00 0.00 2.52
2246 2253 7.309920 GCGGAGTCAATAAAATTTGGTTCTTA 58.690 34.615 0.00 0.00 0.00 2.10
2247 2254 7.973944 GCGGAGTCAATAAAATTTGGTTCTTAT 59.026 33.333 0.00 0.00 0.00 1.73
2248 2255 9.855021 CGGAGTCAATAAAATTTGGTTCTTATT 57.145 29.630 0.00 0.00 0.00 1.40
2264 2271 9.967451 TGGTTCTTATTTAAGGTAATCATGTCA 57.033 29.630 0.00 0.00 34.14 3.58
2276 2283 7.092716 AGGTAATCATGTCAGTTTGATTTTGC 58.907 34.615 5.66 0.00 41.52 3.68
2277 2284 7.039504 AGGTAATCATGTCAGTTTGATTTTGCT 60.040 33.333 5.66 0.00 41.52 3.91
2278 2285 8.243426 GGTAATCATGTCAGTTTGATTTTGCTA 58.757 33.333 5.66 0.00 41.52 3.49
2279 2286 9.793252 GTAATCATGTCAGTTTGATTTTGCTAT 57.207 29.630 5.66 0.00 41.52 2.97
2280 2287 8.922058 AATCATGTCAGTTTGATTTTGCTATC 57.078 30.769 0.00 0.00 39.01 2.08
2281 2288 7.692460 TCATGTCAGTTTGATTTTGCTATCT 57.308 32.000 0.00 0.00 0.00 1.98
2282 2289 8.114331 TCATGTCAGTTTGATTTTGCTATCTT 57.886 30.769 0.00 0.00 0.00 2.40
2283 2290 8.579006 TCATGTCAGTTTGATTTTGCTATCTTT 58.421 29.630 0.00 0.00 0.00 2.52
2284 2291 9.199982 CATGTCAGTTTGATTTTGCTATCTTTT 57.800 29.630 0.00 0.00 0.00 2.27
2285 2292 9.768662 ATGTCAGTTTGATTTTGCTATCTTTTT 57.231 25.926 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 0.396435 TGGTCAGGTTGATCGTGCTT 59.604 50.000 0.00 0.00 27.66 3.91
84 85 3.005050 TGCAATCTCAGTTTCTTGCTTGG 59.995 43.478 7.52 0.00 43.33 3.61
135 136 6.663523 CAGAACCCCACCTTCATTAATAAAGT 59.336 38.462 0.00 0.00 0.00 2.66
165 166 2.285977 GTTCAACGACCAGACAAAGGT 58.714 47.619 0.00 0.00 43.46 3.50
204 205 1.089920 AAGTTCGCCATAGCTGCAAG 58.910 50.000 1.02 0.00 36.60 4.01
262 263 6.413802 CCCTCTTCCTCCATATATATAGCCCT 60.414 46.154 0.00 0.00 0.00 5.19
268 269 9.811208 AATTTCTCCCTCTTCCTCCATATATAT 57.189 33.333 0.00 0.00 0.00 0.86
288 289 1.203001 TCCAAGGGCCACGAAATTTCT 60.203 47.619 15.92 0.92 0.00 2.52
290 291 1.256812 CTCCAAGGGCCACGAAATTT 58.743 50.000 6.18 0.00 0.00 1.82
325 327 2.787035 TGGGGAAACAAGAGTTAGGGTT 59.213 45.455 0.00 0.00 36.84 4.11
375 378 9.931210 GGACCATGTATTTTCGAAATACTTAAG 57.069 33.333 12.12 0.00 34.93 1.85
377 380 9.104965 CAGGACCATGTATTTTCGAAATACTTA 57.895 33.333 12.12 0.00 34.93 2.24
391 394 5.589367 ATTATTGAGCCAGGACCATGTAT 57.411 39.130 0.00 0.00 0.00 2.29
399 402 4.473196 TGTCACCTTATTATTGAGCCAGGA 59.527 41.667 0.00 0.00 0.00 3.86
406 409 6.653020 AGATGCTGTGTCACCTTATTATTGA 58.347 36.000 0.00 0.00 0.00 2.57
422 425 3.577848 CCAGAGGCTATTCTAGATGCTGT 59.422 47.826 11.07 2.21 0.00 4.40
428 431 3.859061 TCGTCCAGAGGCTATTCTAGA 57.141 47.619 0.00 0.00 0.00 2.43
540 543 0.660300 GCGCAAGGGAAACAAGAACG 60.660 55.000 0.30 0.00 38.28 3.95
549 552 2.362760 ATGGCATGCGCAAGGGAA 60.363 55.556 17.11 0.00 41.24 3.97
582 585 6.380079 AGAAGGATGAACATTGGAGTAAGT 57.620 37.500 0.00 0.00 0.00 2.24
586 589 3.588842 TGGAGAAGGATGAACATTGGAGT 59.411 43.478 0.00 0.00 0.00 3.85
610 613 4.993028 TGTTTACAAATGAAGGGCCTAGT 58.007 39.130 6.41 0.00 0.00 2.57
709 712 4.597079 CTCGCACACGCCAATTAAATTAT 58.403 39.130 0.00 0.00 39.84 1.28
726 729 2.100916 GGACCAATTACTAGAGCTCGCA 59.899 50.000 8.37 0.00 0.00 5.10
751 754 3.544684 CACAATCCCTGCTGCTATACAA 58.455 45.455 0.00 0.00 0.00 2.41
759 762 0.327924 TACACCCACAATCCCTGCTG 59.672 55.000 0.00 0.00 0.00 4.41
799 802 7.167924 TCATTAATTGCATTAGTGGCTTGAA 57.832 32.000 0.00 0.00 34.40 2.69
880 883 9.403583 GTGAATGTTTTAGGTGGGATATTAGAA 57.596 33.333 0.00 0.00 0.00 2.10
887 890 4.396357 TGGTGAATGTTTTAGGTGGGAT 57.604 40.909 0.00 0.00 0.00 3.85
895 898 5.724328 TGTGTGCTTTTGGTGAATGTTTTA 58.276 33.333 0.00 0.00 0.00 1.52
902 905 3.088532 AGAGTTGTGTGCTTTTGGTGAA 58.911 40.909 0.00 0.00 0.00 3.18
940 943 8.477256 CAGGGCTCTTGGATTTTTCAATTAATA 58.523 33.333 0.00 0.00 0.00 0.98
941 944 7.333323 CAGGGCTCTTGGATTTTTCAATTAAT 58.667 34.615 0.00 0.00 0.00 1.40
942 945 6.700352 CAGGGCTCTTGGATTTTTCAATTAA 58.300 36.000 0.00 0.00 0.00 1.40
943 946 5.337491 GCAGGGCTCTTGGATTTTTCAATTA 60.337 40.000 0.00 0.00 0.00 1.40
944 947 4.564199 GCAGGGCTCTTGGATTTTTCAATT 60.564 41.667 0.00 0.00 0.00 2.32
945 948 3.055602 GCAGGGCTCTTGGATTTTTCAAT 60.056 43.478 0.00 0.00 0.00 2.57
954 957 0.545309 ACACTAGCAGGGCTCTTGGA 60.545 55.000 0.00 0.00 40.44 3.53
956 959 0.459237 CGACACTAGCAGGGCTCTTG 60.459 60.000 0.00 0.00 40.44 3.02
966 969 3.860536 CCTTTTCTCTTAGCGACACTAGC 59.139 47.826 0.00 0.00 30.79 3.42
972 975 7.326547 GCTATGTATACCTTTTCTCTTAGCGAC 59.673 40.741 0.00 0.00 0.00 5.19
977 980 9.778741 CCATTGCTATGTATACCTTTTCTCTTA 57.221 33.333 7.37 0.00 0.00 2.10
988 991 5.107065 GGAGTTTCGCCATTGCTATGTATAC 60.107 44.000 7.37 0.00 34.43 1.47
993 996 2.292267 AGGAGTTTCGCCATTGCTATG 58.708 47.619 0.68 0.68 34.43 2.23
1005 1008 6.183360 GGACCAACATTATGCTTAGGAGTTTC 60.183 42.308 0.00 0.00 0.00 2.78
1008 1011 4.475016 AGGACCAACATTATGCTTAGGAGT 59.525 41.667 0.00 0.00 0.00 3.85
1038 1041 4.024302 TCAGCAGATACGGTTACTGATACG 60.024 45.833 15.01 0.00 34.07 3.06
1042 1045 2.096980 CGTCAGCAGATACGGTTACTGA 59.903 50.000 15.01 6.38 35.51 3.41
1055 1058 2.096442 TGCTCGCATTCGTCAGCAG 61.096 57.895 0.00 0.00 39.56 4.24
1072 1075 3.551890 CGTTTCATGTCTATTCGGTCCTG 59.448 47.826 0.00 0.00 0.00 3.86
1178 1181 2.809696 TCTTTGTAAAGGCAAGGTACGC 59.190 45.455 4.67 0.00 36.67 4.42
1182 1185 4.469657 TGACATCTTTGTAAAGGCAAGGT 58.530 39.130 4.67 0.00 35.79 3.50
1193 1196 8.859090 TCATTTTATCCTTGTTGACATCTTTGT 58.141 29.630 0.00 0.00 39.32 2.83
1253 1256 6.402442 CGTGAATGACATCTTGCAATACTTGA 60.402 38.462 0.00 0.00 0.00 3.02
1268 1271 0.107703 GGATCCAGGCGTGAATGACA 60.108 55.000 6.95 0.00 0.00 3.58
1270 1273 0.617935 TTGGATCCAGGCGTGAATGA 59.382 50.000 15.53 0.00 0.00 2.57
1430 1433 3.767131 TGATTAGGAATGGTGTCGACTGA 59.233 43.478 17.92 0.37 0.00 3.41
1436 1439 4.883585 TCAAGCATGATTAGGAATGGTGTC 59.116 41.667 0.00 0.00 34.86 3.67
1461 1464 5.026790 GCTTCCTCCTCATAGTACCCATAT 58.973 45.833 0.00 0.00 0.00 1.78
1463 1469 3.243724 GCTTCCTCCTCATAGTACCCAT 58.756 50.000 0.00 0.00 0.00 4.00
1544 1551 1.353694 ACATTTCTCAGCTCAAGCCCT 59.646 47.619 0.00 0.00 43.38 5.19
1545 1552 1.831580 ACATTTCTCAGCTCAAGCCC 58.168 50.000 0.00 0.00 43.38 5.19
1552 1559 2.555757 GCAGGACAAACATTTCTCAGCT 59.444 45.455 0.00 0.00 0.00 4.24
1665 1672 9.715121 ATTACAAATCTCAGCAAATCAACAAAT 57.285 25.926 0.00 0.00 0.00 2.32
1701 1708 3.932089 CAGCTAGACTTCTCCAAGAAAGC 59.068 47.826 0.00 3.89 33.19 3.51
1753 1760 6.349694 GCCTGGAAAAGAGAAGTTTATTGAGG 60.350 42.308 0.00 0.00 0.00 3.86
1758 1765 6.012745 ACATGCCTGGAAAAGAGAAGTTTAT 58.987 36.000 0.00 0.00 0.00 1.40
1817 1824 3.195182 TGCAATACATCAAACATGGTGGG 59.805 43.478 0.00 0.00 0.00 4.61
1846 1853 9.818796 GAAGCTTTTTCACAACAATTTAAAACA 57.181 25.926 0.00 0.00 0.00 2.83
1853 1860 7.063780 CACTTGAGAAGCTTTTTCACAACAATT 59.936 33.333 12.53 0.00 0.00 2.32
1857 1864 4.800471 CCACTTGAGAAGCTTTTTCACAAC 59.200 41.667 12.53 0.00 0.00 3.32
1866 1873 2.620585 GCAAAGTCCACTTGAGAAGCTT 59.379 45.455 0.00 0.00 36.12 3.74
1873 1880 2.575532 CCAGAAGCAAAGTCCACTTGA 58.424 47.619 0.00 0.00 36.12 3.02
1875 1882 1.322442 GCCAGAAGCAAAGTCCACTT 58.678 50.000 0.00 0.00 42.97 3.16
1884 1891 1.597854 CAGTGGACGCCAGAAGCAA 60.598 57.895 0.00 0.00 44.04 3.91
1898 1905 3.674528 AGAGGTTCTGACATCACAGTG 57.325 47.619 0.00 0.00 38.98 3.66
1899 1906 3.194542 GCTAGAGGTTCTGACATCACAGT 59.805 47.826 0.00 0.00 38.98 3.55
1900 1907 3.446873 AGCTAGAGGTTCTGACATCACAG 59.553 47.826 0.00 0.00 38.98 3.66
1901 1908 3.435275 AGCTAGAGGTTCTGACATCACA 58.565 45.455 0.00 0.00 38.98 3.58
1902 1909 3.445450 TGAGCTAGAGGTTCTGACATCAC 59.555 47.826 0.00 0.00 38.98 3.06
1903 1910 3.701664 TGAGCTAGAGGTTCTGACATCA 58.298 45.455 0.00 0.00 38.98 3.07
1904 1911 4.081972 TGTTGAGCTAGAGGTTCTGACATC 60.082 45.833 0.00 0.00 36.86 3.06
1905 1912 3.834813 TGTTGAGCTAGAGGTTCTGACAT 59.165 43.478 0.00 0.00 0.00 3.06
1906 1913 3.230976 TGTTGAGCTAGAGGTTCTGACA 58.769 45.455 0.00 0.00 0.00 3.58
1907 1914 3.944055 TGTTGAGCTAGAGGTTCTGAC 57.056 47.619 0.00 0.00 0.00 3.51
1908 1915 6.798427 ATAATGTTGAGCTAGAGGTTCTGA 57.202 37.500 0.00 0.00 0.00 3.27
1909 1916 9.553064 AAATATAATGTTGAGCTAGAGGTTCTG 57.447 33.333 0.00 0.00 0.00 3.02
1930 1937 8.743714 GCACGGGGTACTATACTAGTAAAATAT 58.256 37.037 6.70 0.00 42.45 1.28
1931 1938 7.723616 TGCACGGGGTACTATACTAGTAAAATA 59.276 37.037 6.70 0.00 42.45 1.40
1932 1939 6.550854 TGCACGGGGTACTATACTAGTAAAAT 59.449 38.462 6.70 0.00 42.45 1.82
1933 1940 5.890985 TGCACGGGGTACTATACTAGTAAAA 59.109 40.000 6.70 0.00 42.45 1.52
1934 1941 5.445069 TGCACGGGGTACTATACTAGTAAA 58.555 41.667 6.70 0.00 42.45 2.01
1935 1942 5.047566 TGCACGGGGTACTATACTAGTAA 57.952 43.478 6.70 0.00 42.45 2.24
1936 1943 4.705110 TGCACGGGGTACTATACTAGTA 57.295 45.455 4.77 4.77 40.14 1.82
1937 1944 3.582998 TGCACGGGGTACTATACTAGT 57.417 47.619 0.00 0.00 42.68 2.57
1938 1945 3.126514 CGATGCACGGGGTACTATACTAG 59.873 52.174 0.00 0.00 38.46 2.57
1939 1946 3.076621 CGATGCACGGGGTACTATACTA 58.923 50.000 0.00 0.00 38.46 1.82
1940 1947 1.884579 CGATGCACGGGGTACTATACT 59.115 52.381 0.00 0.00 38.46 2.12
1941 1948 1.668047 GCGATGCACGGGGTACTATAC 60.668 57.143 10.02 0.00 42.83 1.47
1942 1949 0.599558 GCGATGCACGGGGTACTATA 59.400 55.000 10.02 0.00 42.83 1.31
1943 1950 1.113517 AGCGATGCACGGGGTACTAT 61.114 55.000 10.02 0.00 42.83 2.12
1944 1951 0.466007 TAGCGATGCACGGGGTACTA 60.466 55.000 10.02 1.54 42.83 1.82
1945 1952 1.113517 ATAGCGATGCACGGGGTACT 61.114 55.000 10.02 2.31 42.83 2.73
1946 1953 0.944311 CATAGCGATGCACGGGGTAC 60.944 60.000 10.02 0.00 42.83 3.34
1947 1954 1.365999 CATAGCGATGCACGGGGTA 59.634 57.895 10.02 3.42 42.83 3.69
1948 1955 1.396607 TACATAGCGATGCACGGGGT 61.397 55.000 6.73 1.36 42.83 4.95
1949 1956 0.037326 ATACATAGCGATGCACGGGG 60.037 55.000 6.73 0.00 42.83 5.73
1950 1957 1.350193 GATACATAGCGATGCACGGG 58.650 55.000 6.73 0.00 42.83 5.28
1951 1958 0.984829 CGATACATAGCGATGCACGG 59.015 55.000 6.73 0.00 42.83 4.94
1952 1959 1.963747 TCGATACATAGCGATGCACG 58.036 50.000 6.73 9.97 39.36 5.34
2004 2011 9.520204 CACCGCATCTATTTTGATTAAGAAATT 57.480 29.630 1.21 0.00 0.00 1.82
2005 2012 8.686334 ACACCGCATCTATTTTGATTAAGAAAT 58.314 29.630 0.00 0.00 0.00 2.17
2006 2013 8.050778 ACACCGCATCTATTTTGATTAAGAAA 57.949 30.769 0.00 0.00 0.00 2.52
2007 2014 7.624360 ACACCGCATCTATTTTGATTAAGAA 57.376 32.000 0.00 0.00 0.00 2.52
2008 2015 8.725405 TTACACCGCATCTATTTTGATTAAGA 57.275 30.769 0.00 0.00 0.00 2.10
2009 2016 8.070171 CCTTACACCGCATCTATTTTGATTAAG 58.930 37.037 0.00 0.00 0.00 1.85
2010 2017 7.468084 GCCTTACACCGCATCTATTTTGATTAA 60.468 37.037 0.00 0.00 0.00 1.40
2011 2018 6.017440 GCCTTACACCGCATCTATTTTGATTA 60.017 38.462 0.00 0.00 0.00 1.75
2012 2019 5.221048 GCCTTACACCGCATCTATTTTGATT 60.221 40.000 0.00 0.00 0.00 2.57
2013 2020 4.275936 GCCTTACACCGCATCTATTTTGAT 59.724 41.667 0.00 0.00 0.00 2.57
2014 2021 3.625764 GCCTTACACCGCATCTATTTTGA 59.374 43.478 0.00 0.00 0.00 2.69
2015 2022 3.243068 GGCCTTACACCGCATCTATTTTG 60.243 47.826 0.00 0.00 0.00 2.44
2016 2023 2.949644 GGCCTTACACCGCATCTATTTT 59.050 45.455 0.00 0.00 0.00 1.82
2017 2024 2.172717 AGGCCTTACACCGCATCTATTT 59.827 45.455 0.00 0.00 0.00 1.40
2018 2025 1.768870 AGGCCTTACACCGCATCTATT 59.231 47.619 0.00 0.00 0.00 1.73
2019 2026 1.070758 CAGGCCTTACACCGCATCTAT 59.929 52.381 0.00 0.00 0.00 1.98
2020 2027 0.464036 CAGGCCTTACACCGCATCTA 59.536 55.000 0.00 0.00 0.00 1.98
2021 2028 1.221840 CAGGCCTTACACCGCATCT 59.778 57.895 0.00 0.00 0.00 2.90
2022 2029 0.392461 TTCAGGCCTTACACCGCATC 60.392 55.000 0.00 0.00 0.00 3.91
2023 2030 0.676782 GTTCAGGCCTTACACCGCAT 60.677 55.000 0.00 0.00 0.00 4.73
2024 2031 1.302192 GTTCAGGCCTTACACCGCA 60.302 57.895 0.00 0.00 0.00 5.69
2025 2032 2.038837 GGTTCAGGCCTTACACCGC 61.039 63.158 0.00 0.00 0.00 5.68
2026 2033 1.376812 GGGTTCAGGCCTTACACCG 60.377 63.158 0.00 0.00 0.00 4.94
2027 2034 1.376812 CGGGTTCAGGCCTTACACC 60.377 63.158 0.00 9.61 0.00 4.16
2028 2035 1.376812 CCGGGTTCAGGCCTTACAC 60.377 63.158 0.00 4.43 0.00 2.90
2029 2036 1.536907 TCCGGGTTCAGGCCTTACA 60.537 57.895 0.00 0.00 0.00 2.41
2030 2037 1.078637 GTCCGGGTTCAGGCCTTAC 60.079 63.158 0.00 4.00 0.00 2.34
2031 2038 1.536907 TGTCCGGGTTCAGGCCTTA 60.537 57.895 0.00 0.00 0.00 2.69
2032 2039 2.852075 TGTCCGGGTTCAGGCCTT 60.852 61.111 0.00 0.00 0.00 4.35
2033 2040 3.322466 CTGTCCGGGTTCAGGCCT 61.322 66.667 0.00 0.00 0.00 5.19
2034 2041 2.804828 CTTCTGTCCGGGTTCAGGCC 62.805 65.000 17.31 0.00 33.13 5.19
2035 2042 1.376037 CTTCTGTCCGGGTTCAGGC 60.376 63.158 17.31 0.00 33.13 4.85
2036 2043 1.376037 GCTTCTGTCCGGGTTCAGG 60.376 63.158 17.31 7.71 33.13 3.86
2037 2044 1.738099 CGCTTCTGTCCGGGTTCAG 60.738 63.158 0.00 8.71 0.00 3.02
2038 2045 2.342279 CGCTTCTGTCCGGGTTCA 59.658 61.111 0.00 0.00 0.00 3.18
2039 2046 2.240162 ATCCGCTTCTGTCCGGGTTC 62.240 60.000 0.00 0.00 44.45 3.62
2040 2047 0.974010 TATCCGCTTCTGTCCGGGTT 60.974 55.000 0.00 0.00 44.45 4.11
2041 2048 0.974010 TTATCCGCTTCTGTCCGGGT 60.974 55.000 0.00 0.00 44.45 5.28
2042 2049 0.529992 GTTATCCGCTTCTGTCCGGG 60.530 60.000 0.00 0.00 44.45 5.73
2043 2050 0.174845 TGTTATCCGCTTCTGTCCGG 59.825 55.000 0.00 0.00 45.64 5.14
2044 2051 2.004583 TTGTTATCCGCTTCTGTCCG 57.995 50.000 0.00 0.00 0.00 4.79
2045 2052 2.032178 GCATTGTTATCCGCTTCTGTCC 59.968 50.000 0.00 0.00 0.00 4.02
2046 2053 2.677836 TGCATTGTTATCCGCTTCTGTC 59.322 45.455 0.00 0.00 0.00 3.51
2047 2054 2.679837 CTGCATTGTTATCCGCTTCTGT 59.320 45.455 0.00 0.00 0.00 3.41
2048 2055 2.540361 GCTGCATTGTTATCCGCTTCTG 60.540 50.000 0.00 0.00 0.00 3.02
2049 2056 1.672881 GCTGCATTGTTATCCGCTTCT 59.327 47.619 0.00 0.00 0.00 2.85
2050 2057 1.268743 GGCTGCATTGTTATCCGCTTC 60.269 52.381 0.50 0.00 0.00 3.86
2051 2058 0.740737 GGCTGCATTGTTATCCGCTT 59.259 50.000 0.50 0.00 0.00 4.68
2052 2059 0.394216 TGGCTGCATTGTTATCCGCT 60.394 50.000 0.50 0.00 0.00 5.52
2053 2060 0.029834 CTGGCTGCATTGTTATCCGC 59.970 55.000 0.50 0.00 0.00 5.54
2054 2061 0.029834 GCTGGCTGCATTGTTATCCG 59.970 55.000 11.80 0.00 42.31 4.18
2055 2062 0.386838 GGCTGGCTGCATTGTTATCC 59.613 55.000 18.32 0.00 45.15 2.59
2056 2063 0.029834 CGGCTGGCTGCATTGTTATC 59.970 55.000 18.32 0.00 45.15 1.75
2057 2064 1.386525 CCGGCTGGCTGCATTGTTAT 61.387 55.000 18.32 0.00 45.15 1.89
2058 2065 2.045708 CCGGCTGGCTGCATTGTTA 61.046 57.895 18.32 0.00 45.15 2.41
2059 2066 3.376078 CCGGCTGGCTGCATTGTT 61.376 61.111 18.32 0.00 45.15 2.83
2060 2067 4.349503 TCCGGCTGGCTGCATTGT 62.350 61.111 18.32 0.00 45.15 2.71
2061 2068 3.818787 GTCCGGCTGGCTGCATTG 61.819 66.667 18.32 7.06 45.15 2.82
2062 2069 2.196997 TAAGTCCGGCTGGCTGCATT 62.197 55.000 18.32 6.91 45.15 3.56
2063 2070 1.987807 ATAAGTCCGGCTGGCTGCAT 61.988 55.000 18.32 2.53 45.15 3.96
2064 2071 2.593468 GATAAGTCCGGCTGGCTGCA 62.593 60.000 18.32 0.14 45.15 4.41
2065 2072 1.889573 GATAAGTCCGGCTGGCTGC 60.890 63.158 6.73 7.96 41.94 5.25
2066 2073 0.107456 ATGATAAGTCCGGCTGGCTG 59.893 55.000 6.73 0.00 34.14 4.85
2067 2074 1.717032 TATGATAAGTCCGGCTGGCT 58.283 50.000 6.73 4.51 34.14 4.75
2068 2075 2.543777 TTATGATAAGTCCGGCTGGC 57.456 50.000 6.73 1.77 34.14 4.85
2069 2076 3.564225 GGTTTTATGATAAGTCCGGCTGG 59.436 47.826 4.71 4.71 0.00 4.85
2070 2077 4.273480 CAGGTTTTATGATAAGTCCGGCTG 59.727 45.833 0.00 0.00 0.00 4.85
2071 2078 4.451900 CAGGTTTTATGATAAGTCCGGCT 58.548 43.478 0.00 0.00 0.00 5.52
2072 2079 3.564225 CCAGGTTTTATGATAAGTCCGGC 59.436 47.826 0.00 0.00 0.00 6.13
2073 2080 3.564225 GCCAGGTTTTATGATAAGTCCGG 59.436 47.826 0.00 0.00 0.00 5.14
2074 2081 4.196193 TGCCAGGTTTTATGATAAGTCCG 58.804 43.478 0.00 0.00 0.00 4.79
2075 2082 6.715347 AATGCCAGGTTTTATGATAAGTCC 57.285 37.500 0.00 1.34 0.00 3.85
2082 2089 8.691797 GGTCTAAAATAATGCCAGGTTTTATGA 58.308 33.333 0.00 0.00 0.00 2.15
2083 2090 7.926018 GGGTCTAAAATAATGCCAGGTTTTATG 59.074 37.037 0.00 0.00 0.00 1.90
2084 2091 7.621683 TGGGTCTAAAATAATGCCAGGTTTTAT 59.378 33.333 0.00 0.00 0.00 1.40
2085 2092 6.954684 TGGGTCTAAAATAATGCCAGGTTTTA 59.045 34.615 0.00 0.00 0.00 1.52
2086 2093 5.782845 TGGGTCTAAAATAATGCCAGGTTTT 59.217 36.000 0.00 0.00 0.00 2.43
2087 2094 5.337788 TGGGTCTAAAATAATGCCAGGTTT 58.662 37.500 0.00 0.00 0.00 3.27
2088 2095 4.941713 TGGGTCTAAAATAATGCCAGGTT 58.058 39.130 0.00 0.00 0.00 3.50
2089 2096 4.601406 TGGGTCTAAAATAATGCCAGGT 57.399 40.909 0.00 0.00 0.00 4.00
2090 2097 4.202151 GCTTGGGTCTAAAATAATGCCAGG 60.202 45.833 0.00 0.00 0.00 4.45
2091 2098 4.498009 CGCTTGGGTCTAAAATAATGCCAG 60.498 45.833 0.00 0.00 0.00 4.85
2092 2099 3.380004 CGCTTGGGTCTAAAATAATGCCA 59.620 43.478 0.00 0.00 0.00 4.92
2093 2100 3.795488 GCGCTTGGGTCTAAAATAATGCC 60.795 47.826 0.00 0.00 0.00 4.40
2094 2101 3.372060 GCGCTTGGGTCTAAAATAATGC 58.628 45.455 0.00 0.00 0.00 3.56
2095 2102 3.311322 TCGCGCTTGGGTCTAAAATAATG 59.689 43.478 5.56 0.00 0.00 1.90
2096 2103 3.311596 GTCGCGCTTGGGTCTAAAATAAT 59.688 43.478 5.56 0.00 0.00 1.28
2097 2104 2.674357 GTCGCGCTTGGGTCTAAAATAA 59.326 45.455 5.56 0.00 0.00 1.40
2098 2105 2.273557 GTCGCGCTTGGGTCTAAAATA 58.726 47.619 5.56 0.00 0.00 1.40
2099 2106 1.084289 GTCGCGCTTGGGTCTAAAAT 58.916 50.000 5.56 0.00 0.00 1.82
2100 2107 0.952010 GGTCGCGCTTGGGTCTAAAA 60.952 55.000 5.56 0.00 0.00 1.52
2101 2108 1.375013 GGTCGCGCTTGGGTCTAAA 60.375 57.895 5.56 0.00 0.00 1.85
2102 2109 1.895020 ATGGTCGCGCTTGGGTCTAA 61.895 55.000 5.56 0.00 0.00 2.10
2103 2110 1.038681 TATGGTCGCGCTTGGGTCTA 61.039 55.000 5.56 0.00 0.00 2.59
2104 2111 1.895020 TTATGGTCGCGCTTGGGTCT 61.895 55.000 5.56 0.00 0.00 3.85
2105 2112 0.814010 ATTATGGTCGCGCTTGGGTC 60.814 55.000 5.56 0.00 0.00 4.46
2106 2113 0.393808 AATTATGGTCGCGCTTGGGT 60.394 50.000 5.56 0.00 0.00 4.51
2107 2114 1.531149 CTAATTATGGTCGCGCTTGGG 59.469 52.381 5.56 0.00 0.00 4.12
2108 2115 2.210116 ACTAATTATGGTCGCGCTTGG 58.790 47.619 5.56 0.00 0.00 3.61
2109 2116 3.063452 ACAACTAATTATGGTCGCGCTTG 59.937 43.478 5.56 0.26 0.00 4.01
2110 2117 3.267483 ACAACTAATTATGGTCGCGCTT 58.733 40.909 5.56 0.00 0.00 4.68
2111 2118 2.901249 ACAACTAATTATGGTCGCGCT 58.099 42.857 5.56 0.00 0.00 5.92
2112 2119 3.668596 AACAACTAATTATGGTCGCGC 57.331 42.857 0.00 0.00 0.00 6.86
2113 2120 4.318546 GCCTAACAACTAATTATGGTCGCG 60.319 45.833 0.00 0.00 0.00 5.87
2114 2121 4.573201 TGCCTAACAACTAATTATGGTCGC 59.427 41.667 0.00 0.00 0.00 5.19
2115 2122 6.671614 TTGCCTAACAACTAATTATGGTCG 57.328 37.500 0.00 0.00 31.73 4.79
2116 2123 9.869757 AATTTTGCCTAACAACTAATTATGGTC 57.130 29.630 0.00 0.00 38.23 4.02
2121 2128 9.418045 GCAGAAATTTTGCCTAACAACTAATTA 57.582 29.630 11.83 0.00 38.23 1.40
2122 2129 7.930865 TGCAGAAATTTTGCCTAACAACTAATT 59.069 29.630 17.13 0.00 40.81 1.40
2123 2130 7.441017 TGCAGAAATTTTGCCTAACAACTAAT 58.559 30.769 17.13 0.00 40.81 1.73
2124 2131 6.810911 TGCAGAAATTTTGCCTAACAACTAA 58.189 32.000 17.13 0.00 40.81 2.24
2125 2132 6.398234 TGCAGAAATTTTGCCTAACAACTA 57.602 33.333 17.13 0.36 40.81 2.24
2126 2133 5.275067 TGCAGAAATTTTGCCTAACAACT 57.725 34.783 17.13 0.00 40.81 3.16
2127 2134 5.982465 TTGCAGAAATTTTGCCTAACAAC 57.018 34.783 17.13 0.00 40.81 3.32
2128 2135 6.456181 CGTTTTGCAGAAATTTTGCCTAACAA 60.456 34.615 21.70 11.03 40.81 2.83
2129 2136 5.006165 CGTTTTGCAGAAATTTTGCCTAACA 59.994 36.000 21.70 7.60 40.81 2.41
2130 2137 5.431309 CGTTTTGCAGAAATTTTGCCTAAC 58.569 37.500 17.13 17.36 40.81 2.34
2131 2138 4.025313 GCGTTTTGCAGAAATTTTGCCTAA 60.025 37.500 17.13 11.33 45.45 2.69
2132 2139 3.492756 GCGTTTTGCAGAAATTTTGCCTA 59.507 39.130 17.13 7.52 45.45 3.93
2133 2140 2.287644 GCGTTTTGCAGAAATTTTGCCT 59.712 40.909 17.13 0.00 45.45 4.75
2134 2141 2.638673 GCGTTTTGCAGAAATTTTGCC 58.361 42.857 17.13 6.26 45.45 4.52
2146 2153 4.794169 TCCTATCTTTTTCTGCGTTTTGC 58.206 39.130 0.00 0.00 46.70 3.68
2147 2154 7.567590 GCTTTTCCTATCTTTTTCTGCGTTTTG 60.568 37.037 0.00 0.00 0.00 2.44
2148 2155 6.420903 GCTTTTCCTATCTTTTTCTGCGTTTT 59.579 34.615 0.00 0.00 0.00 2.43
2149 2156 5.920840 GCTTTTCCTATCTTTTTCTGCGTTT 59.079 36.000 0.00 0.00 0.00 3.60
2150 2157 5.461526 GCTTTTCCTATCTTTTTCTGCGTT 58.538 37.500 0.00 0.00 0.00 4.84
2151 2158 4.082733 GGCTTTTCCTATCTTTTTCTGCGT 60.083 41.667 0.00 0.00 0.00 5.24
2152 2159 4.156739 AGGCTTTTCCTATCTTTTTCTGCG 59.843 41.667 0.00 0.00 45.41 5.18
2153 2160 5.651387 AGGCTTTTCCTATCTTTTTCTGC 57.349 39.130 0.00 0.00 45.41 4.26
2154 2161 9.014297 TCTTAAGGCTTTTCCTATCTTTTTCTG 57.986 33.333 4.45 0.00 46.94 3.02
2155 2162 9.588096 TTCTTAAGGCTTTTCCTATCTTTTTCT 57.412 29.630 4.45 0.00 46.94 2.52
2184 2191 2.421775 TGCTTCGTCAGTGCTTCAAAAA 59.578 40.909 0.00 0.00 0.00 1.94
2185 2192 2.013400 TGCTTCGTCAGTGCTTCAAAA 58.987 42.857 0.00 0.00 0.00 2.44
2186 2193 1.662517 TGCTTCGTCAGTGCTTCAAA 58.337 45.000 0.00 0.00 0.00 2.69
2187 2194 1.882912 ATGCTTCGTCAGTGCTTCAA 58.117 45.000 0.00 0.00 0.00 2.69
2188 2195 1.882912 AATGCTTCGTCAGTGCTTCA 58.117 45.000 0.00 0.00 0.00 3.02
2189 2196 4.606457 AATAATGCTTCGTCAGTGCTTC 57.394 40.909 0.00 0.00 0.00 3.86
2190 2197 6.094048 ACAATAATAATGCTTCGTCAGTGCTT 59.906 34.615 0.00 0.00 0.00 3.91
2191 2198 5.586243 ACAATAATAATGCTTCGTCAGTGCT 59.414 36.000 0.00 0.00 0.00 4.40
2192 2199 5.810525 ACAATAATAATGCTTCGTCAGTGC 58.189 37.500 0.00 0.00 0.00 4.40
2193 2200 7.243487 ACAACAATAATAATGCTTCGTCAGTG 58.757 34.615 0.00 0.00 0.00 3.66
2194 2201 7.377766 ACAACAATAATAATGCTTCGTCAGT 57.622 32.000 0.00 0.00 0.00 3.41
2195 2202 6.624917 CGACAACAATAATAATGCTTCGTCAG 59.375 38.462 0.00 0.00 0.00 3.51
2196 2203 6.456315 CCGACAACAATAATAATGCTTCGTCA 60.456 38.462 0.00 0.00 0.00 4.35
2197 2204 5.901884 CCGACAACAATAATAATGCTTCGTC 59.098 40.000 0.00 0.00 0.00 4.20
2198 2205 5.729454 GCCGACAACAATAATAATGCTTCGT 60.729 40.000 0.00 0.00 0.00 3.85
2199 2206 4.670621 GCCGACAACAATAATAATGCTTCG 59.329 41.667 0.00 0.00 0.00 3.79
2200 2207 4.670621 CGCCGACAACAATAATAATGCTTC 59.329 41.667 0.00 0.00 0.00 3.86
2201 2208 4.497340 CCGCCGACAACAATAATAATGCTT 60.497 41.667 0.00 0.00 0.00 3.91
2202 2209 3.003275 CCGCCGACAACAATAATAATGCT 59.997 43.478 0.00 0.00 0.00 3.79
2203 2210 3.002862 TCCGCCGACAACAATAATAATGC 59.997 43.478 0.00 0.00 0.00 3.56
2204 2211 4.272504 ACTCCGCCGACAACAATAATAATG 59.727 41.667 0.00 0.00 0.00 1.90
2205 2212 4.448210 ACTCCGCCGACAACAATAATAAT 58.552 39.130 0.00 0.00 0.00 1.28
2206 2213 3.864243 ACTCCGCCGACAACAATAATAA 58.136 40.909 0.00 0.00 0.00 1.40
2207 2214 3.119065 TGACTCCGCCGACAACAATAATA 60.119 43.478 0.00 0.00 0.00 0.98
2208 2215 2.277084 GACTCCGCCGACAACAATAAT 58.723 47.619 0.00 0.00 0.00 1.28
2209 2216 1.001068 TGACTCCGCCGACAACAATAA 59.999 47.619 0.00 0.00 0.00 1.40
2210 2217 0.604073 TGACTCCGCCGACAACAATA 59.396 50.000 0.00 0.00 0.00 1.90
2211 2218 0.250124 TTGACTCCGCCGACAACAAT 60.250 50.000 0.00 0.00 0.00 2.71
2212 2219 0.250124 ATTGACTCCGCCGACAACAA 60.250 50.000 0.00 0.00 0.00 2.83
2213 2220 0.604073 TATTGACTCCGCCGACAACA 59.396 50.000 0.00 0.00 0.00 3.33
2214 2221 1.717194 TTATTGACTCCGCCGACAAC 58.283 50.000 0.00 0.00 0.00 3.32
2215 2222 2.459060 TTTATTGACTCCGCCGACAA 57.541 45.000 0.00 0.00 0.00 3.18
2216 2223 2.459060 TTTTATTGACTCCGCCGACA 57.541 45.000 0.00 0.00 0.00 4.35
2217 2224 4.095610 CAAATTTTATTGACTCCGCCGAC 58.904 43.478 0.00 0.00 31.84 4.79
2218 2225 3.127895 CCAAATTTTATTGACTCCGCCGA 59.872 43.478 0.00 0.00 31.84 5.54
2219 2226 3.119637 ACCAAATTTTATTGACTCCGCCG 60.120 43.478 0.00 0.00 31.84 6.46
2220 2227 4.450082 ACCAAATTTTATTGACTCCGCC 57.550 40.909 0.00 0.00 31.84 6.13
2221 2228 5.709966 AGAACCAAATTTTATTGACTCCGC 58.290 37.500 0.00 0.00 31.84 5.54
2222 2229 9.855021 AATAAGAACCAAATTTTATTGACTCCG 57.145 29.630 0.00 0.00 31.84 4.63
2238 2245 9.967451 TGACATGATTACCTTAAATAAGAACCA 57.033 29.630 0.00 0.00 35.33 3.67
2250 2257 7.599998 GCAAAATCAAACTGACATGATTACCTT 59.400 33.333 0.00 0.00 43.54 3.50
2251 2258 7.039504 AGCAAAATCAAACTGACATGATTACCT 60.040 33.333 0.00 0.00 43.54 3.08
2252 2259 7.092716 AGCAAAATCAAACTGACATGATTACC 58.907 34.615 0.00 0.00 43.54 2.85
2253 2260 9.793252 ATAGCAAAATCAAACTGACATGATTAC 57.207 29.630 0.00 0.00 43.54 1.89
2255 2262 8.746530 AGATAGCAAAATCAAACTGACATGATT 58.253 29.630 0.00 0.00 45.61 2.57
2256 2263 8.289939 AGATAGCAAAATCAAACTGACATGAT 57.710 30.769 0.00 0.00 37.88 2.45
2257 2264 7.692460 AGATAGCAAAATCAAACTGACATGA 57.308 32.000 0.00 0.00 0.00 3.07
2258 2265 8.752766 AAAGATAGCAAAATCAAACTGACATG 57.247 30.769 0.00 0.00 0.00 3.21
2259 2266 9.768662 AAAAAGATAGCAAAATCAAACTGACAT 57.231 25.926 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.