Multiple sequence alignment - TraesCS1A01G392600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G392600 chr1A 100.000 3383 0 0 1 3383 559348334 559351716 0.000000e+00 6248.0
1 TraesCS1A01G392600 chr1A 82.666 1223 159 39 578 1765 559046000 559044796 0.000000e+00 1035.0
2 TraesCS1A01G392600 chr1A 88.011 367 21 15 2033 2383 559044492 559044133 2.430000e-111 412.0
3 TraesCS1A01G392600 chr1A 86.198 384 23 20 2030 2384 559232409 559232027 4.090000e-104 388.0
4 TraesCS1A01G392600 chr1A 81.003 379 60 11 1 372 563184771 563185144 1.190000e-74 291.0
5 TraesCS1A01G392600 chr1D 90.215 1952 104 35 457 2384 467298853 467300741 0.000000e+00 2466.0
6 TraesCS1A01G392600 chr1D 85.010 1034 117 25 746 1765 467108778 467107769 0.000000e+00 1016.0
7 TraesCS1A01G392600 chr1D 87.123 365 24 15 2036 2383 467107446 467107088 3.160000e-105 392.0
8 TraesCS1A01G392600 chr1D 94.152 171 4 6 2502 2667 467300754 467300923 4.330000e-64 255.0
9 TraesCS1A01G392600 chr1B 91.424 1341 73 17 457 1782 644799549 644798236 0.000000e+00 1801.0
10 TraesCS1A01G392600 chr1B 82.827 1217 149 35 553 1735 643908755 643907565 0.000000e+00 1035.0
11 TraesCS1A01G392600 chr1B 87.596 911 56 26 1831 2718 644798224 644797348 0.000000e+00 1003.0
12 TraesCS1A01G392600 chr1B 88.243 791 75 11 985 1758 644527399 644526610 0.000000e+00 929.0
13 TraesCS1A01G392600 chr1B 84.241 698 87 6 1073 1757 644310622 644311309 0.000000e+00 658.0
14 TraesCS1A01G392600 chr1B 90.047 422 42 0 985 1406 644341714 644342135 6.380000e-152 547.0
15 TraesCS1A01G392600 chr1B 93.985 266 16 0 2048 2313 644526307 644526042 1.460000e-108 403.0
16 TraesCS1A01G392600 chr1B 85.279 394 52 3 963 1350 645092874 645093267 5.260000e-108 401.0
17 TraesCS1A01G392600 chr1B 91.873 283 19 4 2030 2308 644311463 644311745 3.160000e-105 392.0
18 TraesCS1A01G392600 chr1B 86.486 370 34 5 1377 1736 645095715 645096078 3.160000e-105 392.0
19 TraesCS1A01G392600 chr1B 85.366 246 36 0 2048 2293 645096755 645097000 4.330000e-64 255.0
20 TraesCS1A01G392600 chr1B 92.500 120 9 0 2194 2313 644342146 644342265 4.490000e-39 172.0
21 TraesCS1A01G392600 chr1B 93.407 91 5 1 2036 2125 643907237 643907147 2.120000e-27 134.0
22 TraesCS1A01G392600 chr5B 85.253 651 72 12 2756 3383 247673743 247673094 0.000000e+00 649.0
23 TraesCS1A01G392600 chr6B 84.441 662 64 15 2749 3383 394649212 394648563 1.720000e-172 616.0
24 TraesCS1A01G392600 chr6B 78.862 246 45 7 2748 2989 103264806 103265048 3.490000e-35 159.0
25 TraesCS1A01G392600 chr5A 85.956 591 61 11 2750 3321 389760059 389760646 2.230000e-171 612.0
26 TraesCS1A01G392600 chr5A 78.367 245 48 4 2750 2991 426207742 426207984 1.630000e-33 154.0
27 TraesCS1A01G392600 chr2D 83.788 660 66 16 2752 3383 45508990 45509636 3.760000e-164 588.0
28 TraesCS1A01G392600 chr3A 82.398 659 89 11 2749 3383 516297382 516296727 1.770000e-152 549.0
29 TraesCS1A01G392600 chr3A 83.059 608 74 17 2800 3383 716203751 716203149 2.990000e-145 525.0
30 TraesCS1A01G392600 chr3A 81.848 617 70 19 2795 3383 425288231 425288833 6.570000e-132 481.0
31 TraesCS1A01G392600 chr3A 78.592 355 70 5 1 350 194078144 194077791 2.630000e-56 230.0
32 TraesCS1A01G392600 chr6D 82.055 652 84 19 2752 3381 142141154 142140514 2.990000e-145 525.0
33 TraesCS1A01G392600 chr6D 78.884 251 46 7 2750 2996 447437303 447437056 2.700000e-36 163.0
34 TraesCS1A01G392600 chr6D 78.142 183 34 5 25 202 389587320 389587501 9.920000e-21 111.0
35 TraesCS1A01G392600 chr2A 80.989 647 81 19 2752 3382 761079345 761078725 3.050000e-130 475.0
36 TraesCS1A01G392600 chr2A 79.518 249 49 2 2750 2996 606835365 606835117 3.470000e-40 176.0
37 TraesCS1A01G392600 chr5D 85.608 403 39 11 2999 3383 245713800 245714201 4.060000e-109 405.0
38 TraesCS1A01G392600 chr7A 79.885 348 62 7 4 348 30869037 30868695 7.250000e-62 248.0
39 TraesCS1A01G392600 chr7A 77.994 359 62 12 2 350 298477193 298477544 3.420000e-50 209.0
40 TraesCS1A01G392600 chr7A 86.813 91 10 2 234 323 166494858 166494947 2.150000e-17 100.0
41 TraesCS1A01G392600 chr4A 79.050 358 58 13 1 350 602098610 602098958 2.630000e-56 230.0
42 TraesCS1A01G392600 chr4A 78.028 355 70 8 1 349 632012085 632011733 2.040000e-52 217.0
43 TraesCS1A01G392600 chr4A 81.466 232 42 1 2752 2982 542622329 542622098 4.460000e-44 189.0
44 TraesCS1A01G392600 chr7D 89.759 166 16 1 2752 2916 87443740 87443905 9.510000e-51 211.0
45 TraesCS1A01G392600 chr7D 79.327 208 40 3 1 207 604625640 604625435 3.520000e-30 143.0
46 TraesCS1A01G392600 chr7D 80.531 113 21 1 238 350 573909042 573908931 6.010000e-13 86.1
47 TraesCS1A01G392600 chr3D 81.481 243 44 1 2752 2993 109324025 109323783 7.400000e-47 198.0
48 TraesCS1A01G392600 chr4D 81.526 249 33 8 2750 2996 440800018 440800255 3.440000e-45 193.0
49 TraesCS1A01G392600 chr4D 80.488 205 36 4 1 203 505533812 505534014 1.630000e-33 154.0
50 TraesCS1A01G392600 chr2B 76.331 338 64 7 2750 3073 429149475 429149810 2.090000e-37 167.0
51 TraesCS1A01G392600 chrUn 86.154 65 9 0 234 298 96950841 96950905 1.680000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G392600 chr1A 559348334 559351716 3382 False 6248.000000 6248 100.000000 1 3383 1 chr1A.!!$F1 3382
1 TraesCS1A01G392600 chr1A 559044133 559046000 1867 True 723.500000 1035 85.338500 578 2383 2 chr1A.!!$R2 1805
2 TraesCS1A01G392600 chr1D 467298853 467300923 2070 False 1360.500000 2466 92.183500 457 2667 2 chr1D.!!$F1 2210
3 TraesCS1A01G392600 chr1D 467107088 467108778 1690 True 704.000000 1016 86.066500 746 2383 2 chr1D.!!$R1 1637
4 TraesCS1A01G392600 chr1B 644797348 644799549 2201 True 1402.000000 1801 89.510000 457 2718 2 chr1B.!!$R3 2261
5 TraesCS1A01G392600 chr1B 644526042 644527399 1357 True 666.000000 929 91.114000 985 2313 2 chr1B.!!$R2 1328
6 TraesCS1A01G392600 chr1B 643907147 643908755 1608 True 584.500000 1035 88.117000 553 2125 2 chr1B.!!$R1 1572
7 TraesCS1A01G392600 chr1B 644310622 644311745 1123 False 525.000000 658 88.057000 1073 2308 2 chr1B.!!$F1 1235
8 TraesCS1A01G392600 chr1B 644341714 644342265 551 False 359.500000 547 91.273500 985 2313 2 chr1B.!!$F2 1328
9 TraesCS1A01G392600 chr1B 645092874 645097000 4126 False 349.333333 401 85.710333 963 2293 3 chr1B.!!$F3 1330
10 TraesCS1A01G392600 chr5B 247673094 247673743 649 True 649.000000 649 85.253000 2756 3383 1 chr5B.!!$R1 627
11 TraesCS1A01G392600 chr6B 394648563 394649212 649 True 616.000000 616 84.441000 2749 3383 1 chr6B.!!$R1 634
12 TraesCS1A01G392600 chr5A 389760059 389760646 587 False 612.000000 612 85.956000 2750 3321 1 chr5A.!!$F1 571
13 TraesCS1A01G392600 chr2D 45508990 45509636 646 False 588.000000 588 83.788000 2752 3383 1 chr2D.!!$F1 631
14 TraesCS1A01G392600 chr3A 516296727 516297382 655 True 549.000000 549 82.398000 2749 3383 1 chr3A.!!$R2 634
15 TraesCS1A01G392600 chr3A 716203149 716203751 602 True 525.000000 525 83.059000 2800 3383 1 chr3A.!!$R3 583
16 TraesCS1A01G392600 chr3A 425288231 425288833 602 False 481.000000 481 81.848000 2795 3383 1 chr3A.!!$F1 588
17 TraesCS1A01G392600 chr6D 142140514 142141154 640 True 525.000000 525 82.055000 2752 3381 1 chr6D.!!$R1 629
18 TraesCS1A01G392600 chr2A 761078725 761079345 620 True 475.000000 475 80.989000 2752 3382 1 chr2A.!!$R2 630

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.031616 AGATCGAGGGGAGAAAGGCT 60.032 55.0 0.00 0.00 0.00 4.58 F
445 446 0.179009 ACAGGGGCAATGATCATCCG 60.179 55.0 9.06 4.69 0.00 4.18 F
1175 1290 0.179111 ATCAATCACGACGTGCCGAT 60.179 50.0 22.99 18.88 32.98 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 4391 0.033781 GCTTGGTTCAAATGGCTGCA 59.966 50.0 0.50 0.00 0.00 4.41 R
2208 5362 0.905357 CCCAGGTGAAGTCCCTGTAG 59.095 60.0 12.19 3.51 46.68 2.74 R
2580 5759 0.599991 TGTACGTGGAAGTGCTGCTG 60.600 55.0 0.00 0.00 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.592381 CACCAAATATCGCTGTAGTGC 57.408 47.619 0.00 0.00 0.00 4.40
21 22 2.935849 CACCAAATATCGCTGTAGTGCA 59.064 45.455 0.00 0.00 0.00 4.57
22 23 2.936498 ACCAAATATCGCTGTAGTGCAC 59.064 45.455 9.40 9.40 0.00 4.57
23 24 2.033747 CCAAATATCGCTGTAGTGCACG 60.034 50.000 12.01 0.00 0.00 5.34
24 25 1.209128 AATATCGCTGTAGTGCACGC 58.791 50.000 12.01 7.83 0.00 5.34
25 26 0.102300 ATATCGCTGTAGTGCACGCA 59.898 50.000 12.01 13.58 0.00 5.24
26 27 0.800683 TATCGCTGTAGTGCACGCAC 60.801 55.000 14.28 14.28 46.50 5.34
43 44 1.984297 GCACGACGAGAAACTCTAACC 59.016 52.381 0.00 0.00 0.00 2.85
44 45 2.351544 GCACGACGAGAAACTCTAACCT 60.352 50.000 0.00 0.00 0.00 3.50
45 46 3.490399 CACGACGAGAAACTCTAACCTC 58.510 50.000 0.00 0.00 0.00 3.85
46 47 3.058432 CACGACGAGAAACTCTAACCTCA 60.058 47.826 0.00 0.00 0.00 3.86
47 48 3.058363 ACGACGAGAAACTCTAACCTCAC 60.058 47.826 0.00 0.00 0.00 3.51
48 49 3.670091 CGACGAGAAACTCTAACCTCACC 60.670 52.174 0.00 0.00 0.00 4.02
49 50 2.228343 ACGAGAAACTCTAACCTCACCG 59.772 50.000 0.00 0.00 0.00 4.94
50 51 2.608268 GAGAAACTCTAACCTCACCGC 58.392 52.381 0.00 0.00 0.00 5.68
51 52 1.275573 AGAAACTCTAACCTCACCGCC 59.724 52.381 0.00 0.00 0.00 6.13
52 53 0.323957 AAACTCTAACCTCACCGCCC 59.676 55.000 0.00 0.00 0.00 6.13
53 54 1.551019 AACTCTAACCTCACCGCCCC 61.551 60.000 0.00 0.00 0.00 5.80
54 55 1.987855 CTCTAACCTCACCGCCCCA 60.988 63.158 0.00 0.00 0.00 4.96
55 56 1.536907 TCTAACCTCACCGCCCCAA 60.537 57.895 0.00 0.00 0.00 4.12
56 57 1.078426 CTAACCTCACCGCCCCAAG 60.078 63.158 0.00 0.00 0.00 3.61
57 58 2.536997 CTAACCTCACCGCCCCAAGG 62.537 65.000 0.00 0.00 34.94 3.61
58 59 4.974438 ACCTCACCGCCCCAAGGA 62.974 66.667 0.00 0.00 33.47 3.36
59 60 4.101448 CCTCACCGCCCCAAGGAG 62.101 72.222 0.00 0.00 33.47 3.69
60 61 4.785453 CTCACCGCCCCAAGGAGC 62.785 72.222 0.00 0.00 33.47 4.70
66 67 4.453892 GCCCCAAGGAGCTGGCAT 62.454 66.667 5.66 0.00 43.46 4.40
67 68 2.441532 CCCCAAGGAGCTGGCATG 60.442 66.667 0.00 0.00 34.88 4.06
68 69 2.679092 CCCAAGGAGCTGGCATGA 59.321 61.111 0.00 0.00 34.88 3.07
69 70 1.000521 CCCAAGGAGCTGGCATGAA 60.001 57.895 0.00 0.00 34.88 2.57
70 71 0.396695 CCCAAGGAGCTGGCATGAAT 60.397 55.000 0.00 0.00 34.88 2.57
71 72 1.030457 CCAAGGAGCTGGCATGAATC 58.970 55.000 0.00 0.00 0.00 2.52
72 73 1.409802 CCAAGGAGCTGGCATGAATCT 60.410 52.381 0.00 0.00 0.00 2.40
73 74 2.158711 CCAAGGAGCTGGCATGAATCTA 60.159 50.000 0.00 0.00 0.00 1.98
74 75 2.877168 CAAGGAGCTGGCATGAATCTAC 59.123 50.000 0.00 0.00 0.00 2.59
75 76 1.069823 AGGAGCTGGCATGAATCTACG 59.930 52.381 0.00 0.00 0.00 3.51
76 77 0.864455 GAGCTGGCATGAATCTACGC 59.136 55.000 0.00 0.00 0.00 4.42
77 78 0.533755 AGCTGGCATGAATCTACGCC 60.534 55.000 0.00 0.00 45.11 5.68
80 81 3.686622 GGCATGAATCTACGCCAGA 57.313 52.632 0.00 0.00 44.25 3.86
81 82 1.953559 GGCATGAATCTACGCCAGAA 58.046 50.000 0.00 0.00 44.25 3.02
82 83 1.599542 GGCATGAATCTACGCCAGAAC 59.400 52.381 0.00 0.00 44.25 3.01
83 84 2.555199 GCATGAATCTACGCCAGAACT 58.445 47.619 0.00 0.00 36.67 3.01
84 85 2.541762 GCATGAATCTACGCCAGAACTC 59.458 50.000 0.00 0.00 36.67 3.01
85 86 2.961526 TGAATCTACGCCAGAACTCC 57.038 50.000 0.00 0.00 36.67 3.85
86 87 1.134367 TGAATCTACGCCAGAACTCCG 59.866 52.381 0.00 0.00 36.67 4.63
87 88 1.134560 GAATCTACGCCAGAACTCCGT 59.865 52.381 0.00 0.00 36.67 4.69
88 89 0.739561 ATCTACGCCAGAACTCCGTC 59.260 55.000 0.00 0.00 36.67 4.79
89 90 0.322277 TCTACGCCAGAACTCCGTCT 60.322 55.000 0.00 0.00 36.51 4.18
90 91 1.065926 TCTACGCCAGAACTCCGTCTA 60.066 52.381 0.00 0.00 36.51 2.59
91 92 1.741706 CTACGCCAGAACTCCGTCTAA 59.258 52.381 0.00 0.00 36.51 2.10
92 93 1.183549 ACGCCAGAACTCCGTCTAAT 58.816 50.000 0.00 0.00 0.00 1.73
93 94 1.134560 ACGCCAGAACTCCGTCTAATC 59.865 52.381 0.00 0.00 0.00 1.75
94 95 1.536284 CGCCAGAACTCCGTCTAATCC 60.536 57.143 0.00 0.00 0.00 3.01
95 96 1.536284 GCCAGAACTCCGTCTAATCCG 60.536 57.143 0.00 0.00 0.00 4.18
96 97 1.749634 CCAGAACTCCGTCTAATCCGT 59.250 52.381 0.00 0.00 0.00 4.69
97 98 2.223525 CCAGAACTCCGTCTAATCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
98 99 2.022934 AGAACTCCGTCTAATCCGTCC 58.977 52.381 0.00 0.00 0.00 4.79
99 100 1.066757 GAACTCCGTCTAATCCGTCCC 59.933 57.143 0.00 0.00 0.00 4.46
100 101 0.033796 ACTCCGTCTAATCCGTCCCA 60.034 55.000 0.00 0.00 0.00 4.37
101 102 1.108776 CTCCGTCTAATCCGTCCCAA 58.891 55.000 0.00 0.00 0.00 4.12
102 103 0.819582 TCCGTCTAATCCGTCCCAAC 59.180 55.000 0.00 0.00 0.00 3.77
115 116 4.852609 CGTCCCAACGGATAAACTTAAG 57.147 45.455 0.00 0.00 45.21 1.85
116 117 4.497300 CGTCCCAACGGATAAACTTAAGA 58.503 43.478 10.09 0.00 45.21 2.10
117 118 4.565564 CGTCCCAACGGATAAACTTAAGAG 59.434 45.833 10.09 0.00 45.21 2.85
118 119 5.485620 GTCCCAACGGATAAACTTAAGAGT 58.514 41.667 10.09 0.00 41.40 3.24
119 120 5.936372 GTCCCAACGGATAAACTTAAGAGTT 59.064 40.000 10.09 5.50 43.52 3.01
120 121 7.099120 GTCCCAACGGATAAACTTAAGAGTTA 58.901 38.462 10.09 7.57 42.04 2.24
121 122 7.767659 GTCCCAACGGATAAACTTAAGAGTTAT 59.232 37.037 10.09 11.85 42.04 1.89
122 123 7.983484 TCCCAACGGATAAACTTAAGAGTTATC 59.017 37.037 22.27 22.27 38.00 1.75
123 124 7.042925 CCCAACGGATAAACTTAAGAGTTATCG 60.043 40.741 22.83 20.74 45.18 2.92
124 125 7.042925 CCAACGGATAAACTTAAGAGTTATCGG 60.043 40.741 26.75 26.75 45.18 4.18
125 126 7.338800 ACGGATAAACTTAAGAGTTATCGGA 57.661 36.000 30.38 9.78 45.18 4.55
126 127 7.424001 ACGGATAAACTTAAGAGTTATCGGAG 58.576 38.462 30.38 23.95 45.18 4.63
127 128 7.284034 ACGGATAAACTTAAGAGTTATCGGAGA 59.716 37.037 30.38 8.86 45.18 3.71
128 129 7.590689 CGGATAAACTTAAGAGTTATCGGAGAC 59.409 40.741 25.74 16.47 45.18 3.36
129 130 7.866898 GGATAAACTTAAGAGTTATCGGAGACC 59.133 40.741 22.83 13.56 45.18 3.85
130 131 4.897025 ACTTAAGAGTTATCGGAGACCG 57.103 45.455 10.09 3.66 39.97 4.79
132 133 4.946157 ACTTAAGAGTTATCGGAGACCGAA 59.054 41.667 16.48 4.35 46.48 4.30
133 134 5.416952 ACTTAAGAGTTATCGGAGACCGAAA 59.583 40.000 16.48 9.57 46.48 3.46
134 135 6.624642 ACTTAAGAGTTATCGGAGACCGAAAC 60.625 42.308 16.48 18.45 46.48 2.78
135 136 8.920108 ACTTAAGAGTTATCGGAGACCGAAACA 61.920 40.741 24.24 11.73 46.48 2.83
142 143 2.067414 GGAGACCGAAACACTGACTC 57.933 55.000 0.00 0.00 0.00 3.36
143 144 1.666311 GGAGACCGAAACACTGACTCG 60.666 57.143 0.00 0.00 0.00 4.18
144 145 1.266175 GAGACCGAAACACTGACTCGA 59.734 52.381 6.22 0.00 34.52 4.04
145 146 1.679680 AGACCGAAACACTGACTCGAA 59.320 47.619 6.22 0.00 34.52 3.71
146 147 2.100252 AGACCGAAACACTGACTCGAAA 59.900 45.455 6.22 0.00 34.52 3.46
147 148 2.861935 GACCGAAACACTGACTCGAAAA 59.138 45.455 6.22 0.00 34.52 2.29
148 149 3.264104 ACCGAAACACTGACTCGAAAAA 58.736 40.909 6.22 0.00 34.52 1.94
149 150 3.308866 ACCGAAACACTGACTCGAAAAAG 59.691 43.478 6.22 0.00 34.52 2.27
150 151 3.303132 CCGAAACACTGACTCGAAAAAGG 60.303 47.826 6.22 0.00 34.52 3.11
151 152 3.308866 CGAAACACTGACTCGAAAAAGGT 59.691 43.478 0.00 0.00 34.52 3.50
152 153 4.588278 GAAACACTGACTCGAAAAAGGTG 58.412 43.478 0.00 0.00 0.00 4.00
153 154 1.940613 ACACTGACTCGAAAAAGGTGC 59.059 47.619 0.00 0.00 0.00 5.01
154 155 1.070577 CACTGACTCGAAAAAGGTGCG 60.071 52.381 0.00 0.00 0.00 5.34
155 156 0.110644 CTGACTCGAAAAAGGTGCGC 60.111 55.000 0.00 0.00 0.00 6.09
156 157 1.206831 GACTCGAAAAAGGTGCGCC 59.793 57.895 8.71 8.71 0.00 6.53
157 158 2.173382 CTCGAAAAAGGTGCGCCG 59.827 61.111 11.42 0.00 40.50 6.46
158 159 3.928618 CTCGAAAAAGGTGCGCCGC 62.929 63.158 11.42 0.00 40.50 6.53
160 161 3.972276 GAAAAAGGTGCGCCGCCA 61.972 61.111 18.38 0.00 40.50 5.69
161 162 3.281359 GAAAAAGGTGCGCCGCCAT 62.281 57.895 18.38 5.54 40.50 4.40
162 163 3.281359 AAAAAGGTGCGCCGCCATC 62.281 57.895 18.38 0.00 40.50 3.51
170 171 2.816083 CGCCGCCATCCGTACAAA 60.816 61.111 0.00 0.00 34.38 2.83
171 172 2.789249 GCCGCCATCCGTACAAAC 59.211 61.111 0.00 0.00 34.38 2.93
181 182 2.265424 GTACAAACGCCGCCCCTA 59.735 61.111 0.00 0.00 0.00 3.53
182 183 2.102438 GTACAAACGCCGCCCCTAC 61.102 63.158 0.00 0.00 0.00 3.18
183 184 3.646023 TACAAACGCCGCCCCTACG 62.646 63.158 0.00 0.00 0.00 3.51
184 185 4.745751 CAAACGCCGCCCCTACGA 62.746 66.667 0.00 0.00 34.06 3.43
185 186 4.446413 AAACGCCGCCCCTACGAG 62.446 66.667 0.00 0.00 34.06 4.18
191 192 3.136123 CGCCCCTACGAGGACGAA 61.136 66.667 0.00 0.00 37.67 3.85
192 193 2.703798 CGCCCCTACGAGGACGAAA 61.704 63.158 0.00 0.00 37.67 3.46
193 194 1.593265 GCCCCTACGAGGACGAAAA 59.407 57.895 0.00 0.00 37.67 2.29
194 195 0.738762 GCCCCTACGAGGACGAAAAC 60.739 60.000 0.00 0.00 37.67 2.43
195 196 0.108472 CCCCTACGAGGACGAAAACC 60.108 60.000 0.00 0.00 37.67 3.27
196 197 0.108472 CCCTACGAGGACGAAAACCC 60.108 60.000 0.00 0.00 37.67 4.11
197 198 0.893447 CCTACGAGGACGAAAACCCT 59.107 55.000 0.00 0.00 37.67 4.34
198 199 2.094675 CCTACGAGGACGAAAACCCTA 58.905 52.381 0.00 0.00 37.67 3.53
199 200 2.159324 CCTACGAGGACGAAAACCCTAC 60.159 54.545 0.00 0.00 37.67 3.18
200 201 0.605083 ACGAGGACGAAAACCCTACC 59.395 55.000 0.00 0.00 42.66 3.18
201 202 0.893447 CGAGGACGAAAACCCTACCT 59.107 55.000 0.00 0.00 42.66 3.08
202 203 2.094675 CGAGGACGAAAACCCTACCTA 58.905 52.381 0.00 0.00 42.66 3.08
203 204 2.692041 CGAGGACGAAAACCCTACCTAT 59.308 50.000 0.00 0.00 42.66 2.57
204 205 3.243334 CGAGGACGAAAACCCTACCTATC 60.243 52.174 0.00 0.00 42.66 2.08
205 206 3.959449 GAGGACGAAAACCCTACCTATCT 59.041 47.826 0.00 0.00 31.84 1.98
206 207 5.134725 AGGACGAAAACCCTACCTATCTA 57.865 43.478 0.00 0.00 0.00 1.98
207 208 5.713807 AGGACGAAAACCCTACCTATCTAT 58.286 41.667 0.00 0.00 0.00 1.98
208 209 6.141790 AGGACGAAAACCCTACCTATCTATT 58.858 40.000 0.00 0.00 0.00 1.73
209 210 7.300658 AGGACGAAAACCCTACCTATCTATTA 58.699 38.462 0.00 0.00 0.00 0.98
210 211 7.450944 AGGACGAAAACCCTACCTATCTATTAG 59.549 40.741 0.00 0.00 0.00 1.73
211 212 6.990798 ACGAAAACCCTACCTATCTATTAGC 58.009 40.000 0.00 0.00 0.00 3.09
212 213 6.552350 ACGAAAACCCTACCTATCTATTAGCA 59.448 38.462 0.00 0.00 0.00 3.49
213 214 7.234988 ACGAAAACCCTACCTATCTATTAGCAT 59.765 37.037 0.00 0.00 0.00 3.79
214 215 7.545965 CGAAAACCCTACCTATCTATTAGCATG 59.454 40.741 0.00 0.00 0.00 4.06
215 216 8.506196 AAAACCCTACCTATCTATTAGCATGA 57.494 34.615 0.00 0.00 0.00 3.07
216 217 7.726033 AACCCTACCTATCTATTAGCATGAG 57.274 40.000 0.00 0.00 0.00 2.90
217 218 6.806217 ACCCTACCTATCTATTAGCATGAGT 58.194 40.000 0.00 0.00 0.00 3.41
218 219 6.893005 ACCCTACCTATCTATTAGCATGAGTC 59.107 42.308 0.00 0.00 0.00 3.36
219 220 6.892456 CCCTACCTATCTATTAGCATGAGTCA 59.108 42.308 0.00 0.00 0.00 3.41
220 221 7.397476 CCCTACCTATCTATTAGCATGAGTCAA 59.603 40.741 0.00 0.00 0.00 3.18
221 222 8.465999 CCTACCTATCTATTAGCATGAGTCAAG 58.534 40.741 0.00 0.00 0.00 3.02
222 223 9.237187 CTACCTATCTATTAGCATGAGTCAAGA 57.763 37.037 0.00 0.00 0.00 3.02
223 224 7.891561 ACCTATCTATTAGCATGAGTCAAGAC 58.108 38.462 0.00 0.00 0.00 3.01
224 225 7.507277 ACCTATCTATTAGCATGAGTCAAGACA 59.493 37.037 0.00 0.00 0.00 3.41
225 226 7.812191 CCTATCTATTAGCATGAGTCAAGACAC 59.188 40.741 0.00 0.00 0.00 3.67
226 227 5.907207 TCTATTAGCATGAGTCAAGACACC 58.093 41.667 0.00 0.00 0.00 4.16
227 228 4.558226 ATTAGCATGAGTCAAGACACCA 57.442 40.909 0.00 0.83 0.00 4.17
228 229 2.469274 AGCATGAGTCAAGACACCAG 57.531 50.000 0.00 0.00 0.00 4.00
229 230 1.002888 AGCATGAGTCAAGACACCAGG 59.997 52.381 0.00 3.44 0.00 4.45
230 231 1.002430 GCATGAGTCAAGACACCAGGA 59.998 52.381 0.00 0.00 0.00 3.86
231 232 2.355513 GCATGAGTCAAGACACCAGGAT 60.356 50.000 0.00 0.00 0.00 3.24
232 233 3.871463 GCATGAGTCAAGACACCAGGATT 60.871 47.826 0.00 0.00 0.00 3.01
233 234 3.685139 TGAGTCAAGACACCAGGATTC 57.315 47.619 2.72 0.00 0.00 2.52
234 235 3.242867 TGAGTCAAGACACCAGGATTCT 58.757 45.455 2.72 0.00 0.00 2.40
235 236 3.259374 TGAGTCAAGACACCAGGATTCTC 59.741 47.826 2.72 0.00 0.00 2.87
236 237 2.569404 AGTCAAGACACCAGGATTCTCC 59.431 50.000 2.72 0.00 36.58 3.71
237 238 1.909302 TCAAGACACCAGGATTCTCCC 59.091 52.381 0.00 0.00 37.19 4.30
238 239 1.065126 CAAGACACCAGGATTCTCCCC 60.065 57.143 0.00 0.00 37.19 4.81
239 240 0.978146 AGACACCAGGATTCTCCCCG 60.978 60.000 0.00 0.00 37.19 5.73
240 241 2.190578 CACCAGGATTCTCCCCGC 59.809 66.667 0.00 0.00 37.19 6.13
241 242 3.090532 ACCAGGATTCTCCCCGCC 61.091 66.667 0.00 0.00 37.19 6.13
242 243 3.089874 CCAGGATTCTCCCCGCCA 61.090 66.667 0.00 0.00 37.19 5.69
243 244 2.190578 CAGGATTCTCCCCGCCAC 59.809 66.667 0.00 0.00 37.19 5.01
244 245 3.090532 AGGATTCTCCCCGCCACC 61.091 66.667 0.00 0.00 37.19 4.61
245 246 4.547367 GGATTCTCCCCGCCACCG 62.547 72.222 0.00 0.00 0.00 4.94
264 265 4.435970 CCATGGGAGCAGCAGCCA 62.436 66.667 2.85 0.00 43.56 4.75
265 266 2.829003 CATGGGAGCAGCAGCCAG 60.829 66.667 0.00 0.00 43.56 4.85
266 267 3.013327 ATGGGAGCAGCAGCCAGA 61.013 61.111 0.00 0.00 43.56 3.86
267 268 3.341202 ATGGGAGCAGCAGCCAGAC 62.341 63.158 0.00 0.00 43.56 3.51
273 274 4.463879 CAGCAGCCAGACGGGAGG 62.464 72.222 0.00 0.00 40.01 4.30
282 283 2.202892 GACGGGAGGCGAATCCAC 60.203 66.667 8.41 0.00 41.52 4.02
283 284 3.000819 ACGGGAGGCGAATCCACA 61.001 61.111 8.41 0.00 41.52 4.17
284 285 2.202932 CGGGAGGCGAATCCACAG 60.203 66.667 8.41 0.00 41.52 3.66
285 286 2.190578 GGGAGGCGAATCCACAGG 59.809 66.667 8.41 0.00 41.52 4.00
286 287 2.514824 GGAGGCGAATCCACAGGC 60.515 66.667 1.72 0.00 39.34 4.85
287 288 2.586792 GAGGCGAATCCACAGGCT 59.413 61.111 0.00 0.00 43.66 4.58
288 289 2.586792 AGGCGAATCCACAGGCTC 59.413 61.111 0.00 0.00 35.87 4.70
289 290 2.892425 GGCGAATCCACAGGCTCG 60.892 66.667 0.00 0.00 33.18 5.03
290 291 3.567797 GCGAATCCACAGGCTCGC 61.568 66.667 13.76 13.76 42.79 5.03
291 292 2.892425 CGAATCCACAGGCTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
292 293 2.892425 GAATCCACAGGCTCGCCG 60.892 66.667 1.69 0.49 41.95 6.46
293 294 4.473520 AATCCACAGGCTCGCCGG 62.474 66.667 6.53 6.53 41.95 6.13
298 299 4.379243 ACAGGCTCGCCGGTGAAG 62.379 66.667 20.06 13.84 42.66 3.02
299 300 4.069232 CAGGCTCGCCGGTGAAGA 62.069 66.667 20.06 5.07 41.95 2.87
300 301 3.077556 AGGCTCGCCGGTGAAGAT 61.078 61.111 20.06 4.38 41.95 2.40
301 302 2.586357 GGCTCGCCGGTGAAGATC 60.586 66.667 20.06 8.27 0.00 2.75
302 303 2.956964 GCTCGCCGGTGAAGATCG 60.957 66.667 20.06 8.03 0.00 3.69
303 304 2.798689 CTCGCCGGTGAAGATCGA 59.201 61.111 20.06 8.54 0.00 3.59
304 305 1.298713 CTCGCCGGTGAAGATCGAG 60.299 63.158 20.06 14.59 40.22 4.04
305 306 2.278857 CGCCGGTGAAGATCGAGG 60.279 66.667 10.20 0.00 0.00 4.63
306 307 2.107141 GCCGGTGAAGATCGAGGG 59.893 66.667 1.90 0.00 0.00 4.30
307 308 2.815308 CCGGTGAAGATCGAGGGG 59.185 66.667 0.00 0.00 0.00 4.79
308 309 1.756950 CCGGTGAAGATCGAGGGGA 60.757 63.158 0.00 0.00 0.00 4.81
309 310 1.736586 CGGTGAAGATCGAGGGGAG 59.263 63.158 0.00 0.00 0.00 4.30
310 311 0.752009 CGGTGAAGATCGAGGGGAGA 60.752 60.000 0.00 0.00 0.00 3.71
311 312 1.486211 GGTGAAGATCGAGGGGAGAA 58.514 55.000 0.00 0.00 0.00 2.87
312 313 1.831736 GGTGAAGATCGAGGGGAGAAA 59.168 52.381 0.00 0.00 0.00 2.52
313 314 2.159028 GGTGAAGATCGAGGGGAGAAAG 60.159 54.545 0.00 0.00 0.00 2.62
314 315 2.111384 TGAAGATCGAGGGGAGAAAGG 58.889 52.381 0.00 0.00 0.00 3.11
315 316 0.833949 AAGATCGAGGGGAGAAAGGC 59.166 55.000 0.00 0.00 0.00 4.35
316 317 0.031616 AGATCGAGGGGAGAAAGGCT 60.032 55.000 0.00 0.00 0.00 4.58
317 318 0.833949 GATCGAGGGGAGAAAGGCTT 59.166 55.000 0.00 0.00 0.00 4.35
318 319 1.210722 GATCGAGGGGAGAAAGGCTTT 59.789 52.381 13.25 13.25 0.00 3.51
319 320 0.613777 TCGAGGGGAGAAAGGCTTTC 59.386 55.000 28.32 28.32 39.96 2.62
320 321 0.393132 CGAGGGGAGAAAGGCTTTCC 60.393 60.000 30.87 22.67 40.54 3.13
322 323 2.197465 GAGGGGAGAAAGGCTTTCCTA 58.803 52.381 30.87 0.00 43.40 2.94
323 324 2.576648 GAGGGGAGAAAGGCTTTCCTAA 59.423 50.000 30.87 0.00 43.40 2.69
324 325 2.578480 AGGGGAGAAAGGCTTTCCTAAG 59.422 50.000 30.87 0.00 43.40 2.18
325 326 2.309162 GGGGAGAAAGGCTTTCCTAAGT 59.691 50.000 30.87 15.98 43.40 2.24
326 327 3.245300 GGGGAGAAAGGCTTTCCTAAGTT 60.245 47.826 30.87 15.30 43.40 2.66
327 328 3.759086 GGGAGAAAGGCTTTCCTAAGTTG 59.241 47.826 30.87 0.00 43.40 3.16
328 329 4.399219 GGAGAAAGGCTTTCCTAAGTTGT 58.601 43.478 30.87 13.94 43.40 3.32
329 330 4.456222 GGAGAAAGGCTTTCCTAAGTTGTC 59.544 45.833 30.87 20.29 43.40 3.18
330 331 4.399219 AGAAAGGCTTTCCTAAGTTGTCC 58.601 43.478 30.87 7.46 43.40 4.02
331 332 4.104897 AGAAAGGCTTTCCTAAGTTGTCCT 59.895 41.667 30.87 9.75 43.40 3.85
332 333 3.425162 AGGCTTTCCTAAGTTGTCCTG 57.575 47.619 0.00 0.00 42.06 3.86
333 334 2.040412 AGGCTTTCCTAAGTTGTCCTGG 59.960 50.000 0.00 0.00 42.06 4.45
334 335 2.437413 GCTTTCCTAAGTTGTCCTGGG 58.563 52.381 0.00 0.00 33.74 4.45
335 336 2.039879 GCTTTCCTAAGTTGTCCTGGGA 59.960 50.000 0.00 0.00 33.74 4.37
336 337 3.870299 GCTTTCCTAAGTTGTCCTGGGAG 60.870 52.174 0.00 0.00 33.74 4.30
337 338 3.269592 TTCCTAAGTTGTCCTGGGAGA 57.730 47.619 0.00 0.00 30.68 3.71
338 339 2.821437 TCCTAAGTTGTCCTGGGAGAG 58.179 52.381 0.00 0.00 0.00 3.20
339 340 2.382305 TCCTAAGTTGTCCTGGGAGAGA 59.618 50.000 0.00 0.00 0.00 3.10
340 341 2.763448 CCTAAGTTGTCCTGGGAGAGAG 59.237 54.545 0.00 0.00 0.00 3.20
341 342 2.704190 AAGTTGTCCTGGGAGAGAGA 57.296 50.000 0.00 0.00 0.00 3.10
342 343 2.704190 AGTTGTCCTGGGAGAGAGAA 57.296 50.000 0.00 0.00 0.00 2.87
343 344 2.977808 AGTTGTCCTGGGAGAGAGAAA 58.022 47.619 0.00 0.00 0.00 2.52
344 345 3.318313 AGTTGTCCTGGGAGAGAGAAAA 58.682 45.455 0.00 0.00 0.00 2.29
345 346 3.326297 AGTTGTCCTGGGAGAGAGAAAAG 59.674 47.826 0.00 0.00 0.00 2.27
346 347 3.260269 TGTCCTGGGAGAGAGAAAAGA 57.740 47.619 0.00 0.00 0.00 2.52
347 348 3.587498 TGTCCTGGGAGAGAGAAAAGAA 58.413 45.455 0.00 0.00 0.00 2.52
348 349 3.973973 TGTCCTGGGAGAGAGAAAAGAAA 59.026 43.478 0.00 0.00 0.00 2.52
349 350 4.412199 TGTCCTGGGAGAGAGAAAAGAAAA 59.588 41.667 0.00 0.00 0.00 2.29
350 351 5.104109 TGTCCTGGGAGAGAGAAAAGAAAAA 60.104 40.000 0.00 0.00 0.00 1.94
351 352 5.471797 GTCCTGGGAGAGAGAAAAGAAAAAG 59.528 44.000 0.00 0.00 0.00 2.27
352 353 5.132816 TCCTGGGAGAGAGAAAAGAAAAAGT 59.867 40.000 0.00 0.00 0.00 2.66
353 354 5.240403 CCTGGGAGAGAGAAAAGAAAAAGTG 59.760 44.000 0.00 0.00 0.00 3.16
354 355 5.755849 TGGGAGAGAGAAAAGAAAAAGTGT 58.244 37.500 0.00 0.00 0.00 3.55
355 356 6.895782 TGGGAGAGAGAAAAGAAAAAGTGTA 58.104 36.000 0.00 0.00 0.00 2.90
356 357 6.766467 TGGGAGAGAGAAAAGAAAAAGTGTAC 59.234 38.462 0.00 0.00 0.00 2.90
357 358 6.766467 GGGAGAGAGAAAAGAAAAAGTGTACA 59.234 38.462 0.00 0.00 0.00 2.90
358 359 7.445707 GGGAGAGAGAAAAGAAAAAGTGTACAT 59.554 37.037 0.00 0.00 0.00 2.29
359 360 8.286097 GGAGAGAGAAAAGAAAAAGTGTACATG 58.714 37.037 0.00 0.00 0.00 3.21
360 361 8.159344 AGAGAGAAAAGAAAAAGTGTACATGG 57.841 34.615 0.00 0.00 0.00 3.66
361 362 7.993183 AGAGAGAAAAGAAAAAGTGTACATGGA 59.007 33.333 0.00 0.00 0.00 3.41
362 363 8.159344 AGAGAAAAGAAAAAGTGTACATGGAG 57.841 34.615 0.00 0.00 0.00 3.86
363 364 7.775561 AGAGAAAAGAAAAAGTGTACATGGAGT 59.224 33.333 0.00 0.00 0.00 3.85
364 365 8.974060 AGAAAAGAAAAAGTGTACATGGAGTA 57.026 30.769 0.00 0.00 0.00 2.59
365 366 9.403583 AGAAAAGAAAAAGTGTACATGGAGTAA 57.596 29.630 0.00 0.00 33.72 2.24
387 388 1.026584 AAAAGGGTTCCGTTTGACCG 58.973 50.000 9.73 0.00 34.23 4.79
388 389 0.180878 AAAGGGTTCCGTTTGACCGA 59.819 50.000 8.43 0.00 36.78 4.69
389 390 0.180878 AAGGGTTCCGTTTGACCGAA 59.819 50.000 0.00 0.00 36.78 4.30
390 391 0.399075 AGGGTTCCGTTTGACCGAAT 59.601 50.000 0.00 0.00 36.78 3.34
391 392 1.624813 AGGGTTCCGTTTGACCGAATA 59.375 47.619 0.00 0.00 36.78 1.75
392 393 2.038820 AGGGTTCCGTTTGACCGAATAA 59.961 45.455 0.00 0.00 36.78 1.40
393 394 2.813172 GGGTTCCGTTTGACCGAATAAA 59.187 45.455 0.00 0.00 36.78 1.40
394 395 3.252944 GGGTTCCGTTTGACCGAATAAAA 59.747 43.478 0.00 0.00 36.78 1.52
395 396 4.082625 GGGTTCCGTTTGACCGAATAAAAT 60.083 41.667 0.00 0.00 36.78 1.82
396 397 5.463286 GGTTCCGTTTGACCGAATAAAATT 58.537 37.500 0.00 0.00 0.00 1.82
397 398 5.570206 GGTTCCGTTTGACCGAATAAAATTC 59.430 40.000 0.00 0.00 0.00 2.17
398 399 6.376177 GTTCCGTTTGACCGAATAAAATTCT 58.624 36.000 0.00 0.00 0.00 2.40
399 400 6.563222 TCCGTTTGACCGAATAAAATTCTT 57.437 33.333 0.00 0.00 0.00 2.52
400 401 6.375377 TCCGTTTGACCGAATAAAATTCTTG 58.625 36.000 0.00 0.00 0.00 3.02
401 402 6.205076 TCCGTTTGACCGAATAAAATTCTTGA 59.795 34.615 0.00 0.00 0.00 3.02
402 403 6.523201 CCGTTTGACCGAATAAAATTCTTGAG 59.477 38.462 0.00 0.00 0.00 3.02
403 404 7.295201 CGTTTGACCGAATAAAATTCTTGAGA 58.705 34.615 0.00 0.00 0.00 3.27
404 405 7.478667 CGTTTGACCGAATAAAATTCTTGAGAG 59.521 37.037 0.00 0.00 0.00 3.20
405 406 6.422776 TGACCGAATAAAATTCTTGAGAGC 57.577 37.500 0.00 0.00 0.00 4.09
406 407 5.937540 TGACCGAATAAAATTCTTGAGAGCA 59.062 36.000 0.00 0.00 0.00 4.26
407 408 6.429692 TGACCGAATAAAATTCTTGAGAGCAA 59.570 34.615 0.00 0.00 0.00 3.91
408 409 7.040755 TGACCGAATAAAATTCTTGAGAGCAAA 60.041 33.333 0.00 0.00 32.73 3.68
409 410 7.657336 ACCGAATAAAATTCTTGAGAGCAAAA 58.343 30.769 0.00 0.00 32.73 2.44
410 411 7.595130 ACCGAATAAAATTCTTGAGAGCAAAAC 59.405 33.333 0.00 0.00 32.73 2.43
411 412 7.062255 CCGAATAAAATTCTTGAGAGCAAAACC 59.938 37.037 0.00 0.00 32.73 3.27
412 413 7.062255 CGAATAAAATTCTTGAGAGCAAAACCC 59.938 37.037 0.00 0.00 32.73 4.11
413 414 5.876651 AAAATTCTTGAGAGCAAAACCCT 57.123 34.783 0.00 0.00 32.73 4.34
414 415 4.861102 AATTCTTGAGAGCAAAACCCTG 57.139 40.909 0.00 0.00 32.73 4.45
415 416 1.609208 TCTTGAGAGCAAAACCCTGC 58.391 50.000 0.00 0.00 42.97 4.85
421 422 2.997315 GCAAAACCCTGCTCCCCC 60.997 66.667 0.00 0.00 39.34 5.40
422 423 2.854076 CAAAACCCTGCTCCCCCT 59.146 61.111 0.00 0.00 0.00 4.79
423 424 2.083715 CAAAACCCTGCTCCCCCTA 58.916 57.895 0.00 0.00 0.00 3.53
424 425 0.631212 CAAAACCCTGCTCCCCCTAT 59.369 55.000 0.00 0.00 0.00 2.57
425 426 1.850345 CAAAACCCTGCTCCCCCTATA 59.150 52.381 0.00 0.00 0.00 1.31
426 427 2.243736 CAAAACCCTGCTCCCCCTATAA 59.756 50.000 0.00 0.00 0.00 0.98
427 428 1.519498 AACCCTGCTCCCCCTATAAC 58.481 55.000 0.00 0.00 0.00 1.89
428 429 0.345502 ACCCTGCTCCCCCTATAACA 59.654 55.000 0.00 0.00 0.00 2.41
429 430 1.059913 CCCTGCTCCCCCTATAACAG 58.940 60.000 0.00 0.00 0.00 3.16
430 431 1.059913 CCTGCTCCCCCTATAACAGG 58.940 60.000 0.00 0.00 45.07 4.00
441 442 4.371624 CCTATAACAGGGGCAATGATCA 57.628 45.455 0.00 0.00 41.26 2.92
442 443 4.927049 CCTATAACAGGGGCAATGATCAT 58.073 43.478 1.18 1.18 41.26 2.45
443 444 4.946157 CCTATAACAGGGGCAATGATCATC 59.054 45.833 9.06 0.00 41.26 2.92
444 445 2.077687 AACAGGGGCAATGATCATCC 57.922 50.000 9.06 6.78 0.00 3.51
445 446 0.179009 ACAGGGGCAATGATCATCCG 60.179 55.000 9.06 4.69 0.00 4.18
446 447 1.228367 AGGGGCAATGATCATCCGC 60.228 57.895 17.94 17.94 0.00 5.54
447 448 1.529010 GGGGCAATGATCATCCGCA 60.529 57.895 23.89 0.00 0.00 5.69
448 449 1.108727 GGGGCAATGATCATCCGCAA 61.109 55.000 23.89 0.00 0.00 4.85
449 450 0.746063 GGGCAATGATCATCCGCAAA 59.254 50.000 23.89 0.00 0.00 3.68
450 451 1.342174 GGGCAATGATCATCCGCAAAT 59.658 47.619 23.89 0.92 0.00 2.32
451 452 2.557924 GGGCAATGATCATCCGCAAATA 59.442 45.455 23.89 0.00 0.00 1.40
452 453 3.005684 GGGCAATGATCATCCGCAAATAA 59.994 43.478 23.89 0.00 0.00 1.40
453 454 4.322198 GGGCAATGATCATCCGCAAATAAT 60.322 41.667 23.89 0.00 0.00 1.28
454 455 5.105797 GGGCAATGATCATCCGCAAATAATA 60.106 40.000 23.89 0.00 0.00 0.98
455 456 6.406177 GGGCAATGATCATCCGCAAATAATAT 60.406 38.462 23.89 0.00 0.00 1.28
491 492 6.869315 TTCAAGTGAATGTTGATTACGGAA 57.131 33.333 0.00 0.00 33.95 4.30
533 534 1.173913 AAGTAATGGAAAGGCGTGCC 58.826 50.000 1.67 1.67 0.00 5.01
566 568 6.478344 TGAAAAGAAAATGTTCAACCGAATGG 59.522 34.615 0.00 0.00 37.48 3.16
732 761 1.655484 CATGCATCCACGTAGCTTGA 58.345 50.000 0.00 0.00 36.02 3.02
740 769 2.760650 TCCACGTAGCTTGATCTGACAT 59.239 45.455 0.00 0.00 0.00 3.06
813 861 8.835550 AGCCCTAGTTAGTTAGTTATTACTGT 57.164 34.615 0.00 0.00 35.78 3.55
844 897 2.821991 AATGCTCCTGTCGCCTATAC 57.178 50.000 0.00 0.00 0.00 1.47
916 986 0.605589 CCTCTGTTCGGTTCTGCTCT 59.394 55.000 0.00 0.00 0.00 4.09
917 987 1.671261 CCTCTGTTCGGTTCTGCTCTG 60.671 57.143 0.00 0.00 0.00 3.35
919 989 0.320247 CTGTTCGGTTCTGCTCTGCT 60.320 55.000 0.00 0.00 0.00 4.24
922 992 0.392706 TTCGGTTCTGCTCTGCTTCA 59.607 50.000 0.00 0.00 0.00 3.02
923 993 0.319900 TCGGTTCTGCTCTGCTTCAC 60.320 55.000 0.00 0.00 0.00 3.18
949 1023 3.097614 ACTAGATAGAAACCAGGTGCGT 58.902 45.455 0.00 0.00 0.00 5.24
950 1024 2.674796 AGATAGAAACCAGGTGCGTC 57.325 50.000 0.00 0.00 0.00 5.19
970 1052 3.067742 GTCCTTTAGCTAGCACATACCGA 59.932 47.826 18.83 0.14 0.00 4.69
983 1089 2.563179 ACATACCGAGAACTGCTCTGTT 59.437 45.455 0.00 0.00 40.83 3.16
990 1096 3.701241 GAGAACTGCTCTGTTAGATCGG 58.299 50.000 0.00 0.00 40.61 4.18
992 1098 1.186200 ACTGCTCTGTTAGATCGGCA 58.814 50.000 0.00 0.00 0.00 5.69
1025 1131 1.224592 GGATCACGGTGCCCATCTT 59.775 57.895 2.51 0.00 0.00 2.40
1161 1276 1.673168 GCTTCTTCAGGGCGATCAAT 58.327 50.000 0.00 0.00 0.00 2.57
1166 1281 0.534873 TTCAGGGCGATCAATCACGA 59.465 50.000 0.00 0.00 0.00 4.35
1175 1290 0.179111 ATCAATCACGACGTGCCGAT 60.179 50.000 22.99 18.88 32.98 4.18
1716 4280 3.528532 GGATTCCCTATTCGTCAACGTT 58.471 45.455 0.00 0.00 40.80 3.99
1719 4283 0.725117 CCCTATTCGTCAACGTTGGC 59.275 55.000 27.02 24.95 40.80 4.52
1736 4300 2.496817 CGACTCCCTGCAGGTAGC 59.503 66.667 30.63 18.54 45.96 3.58
1768 4338 1.448540 CCATCACCACTCGCTCACC 60.449 63.158 0.00 0.00 0.00 4.02
1794 4364 4.020928 TCACTTTGTTACCCTCATCGCTTA 60.021 41.667 0.00 0.00 0.00 3.09
1795 4365 4.092968 CACTTTGTTACCCTCATCGCTTAC 59.907 45.833 0.00 0.00 0.00 2.34
1797 4367 5.186409 ACTTTGTTACCCTCATCGCTTACTA 59.814 40.000 0.00 0.00 0.00 1.82
1798 4368 4.644103 TGTTACCCTCATCGCTTACTAC 57.356 45.455 0.00 0.00 0.00 2.73
1799 4369 4.275810 TGTTACCCTCATCGCTTACTACT 58.724 43.478 0.00 0.00 0.00 2.57
1803 4373 2.036475 CCCTCATCGCTTACTACTGCAT 59.964 50.000 0.00 0.00 0.00 3.96
1815 4388 2.636893 ACTACTGCATCTGGGATCCATC 59.363 50.000 15.23 0.00 30.82 3.51
1816 4389 0.769873 ACTGCATCTGGGATCCATCC 59.230 55.000 15.23 0.00 46.41 3.51
1825 4398 1.152138 GGATCCATCCATGCAGCCA 59.848 57.895 6.95 0.00 46.38 4.75
1826 4399 0.251653 GGATCCATCCATGCAGCCAT 60.252 55.000 6.95 0.00 46.38 4.40
1827 4400 1.629043 GATCCATCCATGCAGCCATT 58.371 50.000 0.00 0.00 0.00 3.16
1859 4502 0.599558 AGTGTTGTGCATGCATGGTC 59.400 50.000 25.64 11.56 0.00 4.02
1921 4597 2.724690 CAGTTCTTGTCAAGGACGTACG 59.275 50.000 16.76 15.01 42.10 3.67
1923 4599 0.599558 TCTTGTCAAGGACGTACGGG 59.400 55.000 21.06 3.62 34.95 5.28
1985 5042 4.988598 CGTGCGACCCTTGTGGCT 62.989 66.667 1.60 0.00 45.44 4.75
2009 5066 0.907704 CCTGTGCCCTACCACCTGTA 60.908 60.000 0.00 0.00 34.85 2.74
2010 5067 0.537188 CTGTGCCCTACCACCTGTAG 59.463 60.000 0.00 0.00 45.55 2.74
2011 5068 1.221021 GTGCCCTACCACCTGTAGC 59.779 63.158 0.00 0.00 44.77 3.58
2013 5070 0.337082 TGCCCTACCACCTGTAGCTA 59.663 55.000 0.00 0.00 44.77 3.32
2014 5071 0.751452 GCCCTACCACCTGTAGCTAC 59.249 60.000 17.30 17.30 44.77 3.58
2015 5072 1.688627 GCCCTACCACCTGTAGCTACT 60.689 57.143 23.84 5.90 44.77 2.57
2016 5073 2.032620 CCCTACCACCTGTAGCTACTG 58.967 57.143 23.84 22.12 44.77 2.74
2142 5296 1.743958 CTGTCGGTGATCTACTTCGGT 59.256 52.381 0.00 0.00 0.00 4.69
2208 5362 2.741055 GGAAGGGGAGCTGAGCCTC 61.741 68.421 0.00 0.00 0.00 4.70
2263 5417 2.656069 GCCTACAAGTCCCGCCTCA 61.656 63.158 0.00 0.00 0.00 3.86
2411 5580 2.347731 GCAGGAGCTGTTTACTGTACC 58.652 52.381 0.00 0.00 37.91 3.34
2412 5581 2.028020 GCAGGAGCTGTTTACTGTACCT 60.028 50.000 0.00 0.00 37.91 3.08
2413 5582 3.589988 CAGGAGCTGTTTACTGTACCTG 58.410 50.000 0.00 0.00 35.78 4.00
2414 5583 3.006967 CAGGAGCTGTTTACTGTACCTGT 59.993 47.826 17.08 0.00 36.56 4.00
2415 5584 3.646637 AGGAGCTGTTTACTGTACCTGTT 59.353 43.478 0.00 0.00 0.00 3.16
2416 5585 4.102681 AGGAGCTGTTTACTGTACCTGTTT 59.897 41.667 0.00 0.00 0.00 2.83
2417 5586 5.306160 AGGAGCTGTTTACTGTACCTGTTTA 59.694 40.000 0.00 0.00 0.00 2.01
2418 5587 6.013639 AGGAGCTGTTTACTGTACCTGTTTAT 60.014 38.462 0.00 0.00 0.00 1.40
2435 5604 7.506938 ACCTGTTTATTTAATCCATGGATCCAG 59.493 37.037 27.45 19.01 33.08 3.86
2442 5611 8.818622 ATTTAATCCATGGATCCAGACATATG 57.181 34.615 27.45 12.00 33.08 1.78
2450 5620 4.968719 TGGATCCAGACATATGTGGTAACT 59.031 41.667 14.43 0.09 40.30 2.24
2456 5626 7.913789 TCCAGACATATGTGGTAACTAAAAGT 58.086 34.615 14.43 0.00 40.30 2.66
2467 5637 9.014297 TGTGGTAACTAAAAGTAGTAGTAGGAC 57.986 37.037 0.00 0.00 39.79 3.85
2477 5647 6.756299 AGTAGTAGTAGGACTAGTTGTTGC 57.244 41.667 0.00 0.00 35.97 4.17
2580 5759 4.575236 GGCCTTGTAATTTCCACTAGTAGC 59.425 45.833 0.00 0.00 0.00 3.58
2636 5822 2.959030 GCTCTCTTGTCCCCTTTTGTTT 59.041 45.455 0.00 0.00 0.00 2.83
2646 5832 2.935849 CCCCTTTTGTTTGTTTGCTCAC 59.064 45.455 0.00 0.00 0.00 3.51
2697 5883 0.390735 CACTGCCCGGTGTACCTTAC 60.391 60.000 0.00 0.00 33.04 2.34
2718 5904 9.726438 CCTTACATAGGCAGCTTAATTAGTTAT 57.274 33.333 0.00 0.00 37.17 1.89
2721 5907 8.311650 ACATAGGCAGCTTAATTAGTTATTCG 57.688 34.615 0.00 0.00 0.00 3.34
2722 5908 8.148351 ACATAGGCAGCTTAATTAGTTATTCGA 58.852 33.333 0.00 0.00 0.00 3.71
2723 5909 8.651588 CATAGGCAGCTTAATTAGTTATTCGAG 58.348 37.037 0.00 0.00 0.00 4.04
2724 5910 6.583562 AGGCAGCTTAATTAGTTATTCGAGT 58.416 36.000 0.00 0.00 0.00 4.18
2725 5911 6.702282 AGGCAGCTTAATTAGTTATTCGAGTC 59.298 38.462 0.00 0.00 0.00 3.36
2726 5912 6.702282 GGCAGCTTAATTAGTTATTCGAGTCT 59.298 38.462 0.00 0.00 0.00 3.24
2727 5913 7.866393 GGCAGCTTAATTAGTTATTCGAGTCTA 59.134 37.037 0.00 0.00 0.00 2.59
2728 5914 8.692615 GCAGCTTAATTAGTTATTCGAGTCTAC 58.307 37.037 0.00 0.00 0.00 2.59
2729 5915 9.731819 CAGCTTAATTAGTTATTCGAGTCTACA 57.268 33.333 0.00 0.00 0.00 2.74
2826 6014 3.551887 GACAAAAACGCCGGCCCAG 62.552 63.158 23.46 9.96 0.00 4.45
2842 6030 2.048597 AGCGCGTCGACCAATTCA 60.049 55.556 10.58 0.00 0.00 2.57
2956 6186 2.609299 TCCCCTCAATGTCCGCCA 60.609 61.111 0.00 0.00 0.00 5.69
2971 6201 3.953775 CCACGGGCCCACTTGTCT 61.954 66.667 24.92 0.00 0.00 3.41
2996 6226 4.353437 AACGACCACCCGCGTCTC 62.353 66.667 4.92 0.00 40.23 3.36
3052 6296 3.488090 CGCGAGCCCGTCCTTTTC 61.488 66.667 0.00 0.00 38.24 2.29
3355 6625 0.321564 CGGATGTCAACCTGCCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.935849 TGCACTACAGCGATATTTGGTG 59.064 45.455 6.56 6.56 40.53 4.17
1 2 2.936498 GTGCACTACAGCGATATTTGGT 59.064 45.455 10.32 0.00 37.31 3.67
2 3 2.033747 CGTGCACTACAGCGATATTTGG 60.034 50.000 16.19 0.00 37.31 3.28
3 4 2.597505 GCGTGCACTACAGCGATATTTG 60.598 50.000 16.19 0.00 37.31 2.32
5 6 1.209128 GCGTGCACTACAGCGATATT 58.791 50.000 16.19 0.00 37.31 1.28
6 7 0.102300 TGCGTGCACTACAGCGATAT 59.898 50.000 16.19 0.00 37.31 1.63
7 8 0.800683 GTGCGTGCACTACAGCGATA 60.801 55.000 17.32 0.00 43.12 2.92
8 9 2.094659 GTGCGTGCACTACAGCGAT 61.095 57.895 17.32 0.00 43.12 4.58
9 10 2.733218 GTGCGTGCACTACAGCGA 60.733 61.111 17.32 0.00 43.12 4.93
10 11 4.121227 CGTGCGTGCACTACAGCG 62.121 66.667 21.36 14.15 44.16 5.18
11 12 2.733218 TCGTGCGTGCACTACAGC 60.733 61.111 21.36 11.38 44.16 4.40
12 13 2.707090 CGTCGTGCGTGCACTACAG 61.707 63.158 23.65 14.99 44.16 2.74
13 14 2.728015 CGTCGTGCGTGCACTACA 60.728 61.111 23.65 10.36 44.16 2.74
14 15 2.426183 CTCGTCGTGCGTGCACTAC 61.426 63.158 21.36 19.02 44.16 2.73
15 16 2.120355 TTCTCGTCGTGCGTGCACTA 62.120 55.000 21.36 9.20 44.16 2.74
16 17 2.947118 TTTCTCGTCGTGCGTGCACT 62.947 55.000 21.36 0.00 44.16 4.40
17 18 2.582265 TTTCTCGTCGTGCGTGCAC 61.582 57.895 14.81 14.81 43.01 4.57
18 19 2.278923 TTTCTCGTCGTGCGTGCA 60.279 55.556 0.00 0.00 42.13 4.57
19 20 2.167918 GTTTCTCGTCGTGCGTGC 59.832 61.111 0.00 0.00 42.13 5.34
20 21 0.660595 AGAGTTTCTCGTCGTGCGTG 60.661 55.000 0.00 1.07 42.13 5.34
21 22 0.870393 TAGAGTTTCTCGTCGTGCGT 59.130 50.000 0.00 0.00 42.13 5.24
22 23 1.642843 GTTAGAGTTTCTCGTCGTGCG 59.357 52.381 0.00 0.00 43.01 5.34
23 24 1.984297 GGTTAGAGTTTCTCGTCGTGC 59.016 52.381 0.00 0.00 35.36 5.34
24 25 3.058432 TGAGGTTAGAGTTTCTCGTCGTG 60.058 47.826 0.00 0.00 35.36 4.35
25 26 3.058363 GTGAGGTTAGAGTTTCTCGTCGT 60.058 47.826 0.00 0.00 35.36 4.34
26 27 3.490399 GTGAGGTTAGAGTTTCTCGTCG 58.510 50.000 0.00 0.00 35.36 5.12
27 28 3.670091 CGGTGAGGTTAGAGTTTCTCGTC 60.670 52.174 0.00 0.00 35.36 4.20
28 29 2.228343 CGGTGAGGTTAGAGTTTCTCGT 59.772 50.000 0.00 0.00 35.36 4.18
29 30 2.864968 CGGTGAGGTTAGAGTTTCTCG 58.135 52.381 0.00 0.00 35.36 4.04
30 31 2.608268 GCGGTGAGGTTAGAGTTTCTC 58.392 52.381 0.00 0.00 0.00 2.87
31 32 1.275573 GGCGGTGAGGTTAGAGTTTCT 59.724 52.381 0.00 0.00 0.00 2.52
32 33 1.675116 GGGCGGTGAGGTTAGAGTTTC 60.675 57.143 0.00 0.00 0.00 2.78
33 34 0.323957 GGGCGGTGAGGTTAGAGTTT 59.676 55.000 0.00 0.00 0.00 2.66
34 35 1.551019 GGGGCGGTGAGGTTAGAGTT 61.551 60.000 0.00 0.00 0.00 3.01
35 36 1.988406 GGGGCGGTGAGGTTAGAGT 60.988 63.158 0.00 0.00 0.00 3.24
36 37 1.550130 TTGGGGCGGTGAGGTTAGAG 61.550 60.000 0.00 0.00 0.00 2.43
37 38 1.536907 TTGGGGCGGTGAGGTTAGA 60.537 57.895 0.00 0.00 0.00 2.10
38 39 1.078426 CTTGGGGCGGTGAGGTTAG 60.078 63.158 0.00 0.00 0.00 2.34
39 40 2.598787 CCTTGGGGCGGTGAGGTTA 61.599 63.158 0.00 0.00 0.00 2.85
40 41 3.966543 CCTTGGGGCGGTGAGGTT 61.967 66.667 0.00 0.00 0.00 3.50
41 42 4.974438 TCCTTGGGGCGGTGAGGT 62.974 66.667 0.00 0.00 0.00 3.85
42 43 4.101448 CTCCTTGGGGCGGTGAGG 62.101 72.222 0.00 0.00 0.00 3.86
43 44 4.785453 GCTCCTTGGGGCGGTGAG 62.785 72.222 0.00 0.00 0.00 3.51
49 50 4.453892 ATGCCAGCTCCTTGGGGC 62.454 66.667 2.75 2.75 46.58 5.80
50 51 2.441532 CATGCCAGCTCCTTGGGG 60.442 66.667 0.00 0.00 38.72 4.96
51 52 0.396695 ATTCATGCCAGCTCCTTGGG 60.397 55.000 0.00 0.00 38.72 4.12
52 53 1.030457 GATTCATGCCAGCTCCTTGG 58.970 55.000 0.00 0.00 41.35 3.61
53 54 2.054232 AGATTCATGCCAGCTCCTTG 57.946 50.000 0.00 0.00 0.00 3.61
54 55 2.484417 CGTAGATTCATGCCAGCTCCTT 60.484 50.000 0.00 0.00 0.00 3.36
55 56 1.069823 CGTAGATTCATGCCAGCTCCT 59.930 52.381 0.00 0.00 0.00 3.69
56 57 1.506493 CGTAGATTCATGCCAGCTCC 58.494 55.000 0.00 0.00 0.00 4.70
57 58 0.864455 GCGTAGATTCATGCCAGCTC 59.136 55.000 0.00 0.00 0.00 4.09
58 59 2.997899 GCGTAGATTCATGCCAGCT 58.002 52.632 0.00 0.00 0.00 4.24
63 64 2.541762 GAGTTCTGGCGTAGATTCATGC 59.458 50.000 0.00 0.00 34.80 4.06
64 65 3.126831 GGAGTTCTGGCGTAGATTCATG 58.873 50.000 0.00 0.00 34.80 3.07
65 66 2.223829 CGGAGTTCTGGCGTAGATTCAT 60.224 50.000 0.00 0.00 34.80 2.57
66 67 1.134367 CGGAGTTCTGGCGTAGATTCA 59.866 52.381 0.00 0.00 34.80 2.57
67 68 1.134560 ACGGAGTTCTGGCGTAGATTC 59.865 52.381 0.00 0.00 37.78 2.52
68 69 1.183549 ACGGAGTTCTGGCGTAGATT 58.816 50.000 0.00 0.00 37.78 2.40
69 70 2.883572 ACGGAGTTCTGGCGTAGAT 58.116 52.632 0.00 0.00 37.78 1.98
70 71 4.410225 ACGGAGTTCTGGCGTAGA 57.590 55.556 0.00 0.00 37.78 2.59
82 83 1.108776 TTGGGACGGATTAGACGGAG 58.891 55.000 0.00 0.00 35.23 4.63
83 84 0.819582 GTTGGGACGGATTAGACGGA 59.180 55.000 0.00 0.00 35.23 4.69
84 85 0.526954 CGTTGGGACGGATTAGACGG 60.527 60.000 0.00 0.00 45.32 4.79
85 86 2.953669 CGTTGGGACGGATTAGACG 58.046 57.895 0.00 0.00 45.32 4.18
94 95 5.852317 ACTCTTAAGTTTATCCGTTGGGACG 60.852 44.000 1.63 0.00 37.58 4.79
95 96 5.485620 ACTCTTAAGTTTATCCGTTGGGAC 58.514 41.667 1.63 0.00 37.58 4.46
96 97 5.750352 ACTCTTAAGTTTATCCGTTGGGA 57.250 39.130 1.63 0.00 38.72 4.37
97 98 7.042925 CGATAACTCTTAAGTTTATCCGTTGGG 60.043 40.741 21.36 11.08 43.28 4.12
98 99 7.042925 CCGATAACTCTTAAGTTTATCCGTTGG 60.043 40.741 21.36 16.47 43.28 3.77
99 100 7.703621 TCCGATAACTCTTAAGTTTATCCGTTG 59.296 37.037 21.36 13.55 43.28 4.10
100 101 7.775120 TCCGATAACTCTTAAGTTTATCCGTT 58.225 34.615 21.36 11.01 43.28 4.44
101 102 7.284034 TCTCCGATAACTCTTAAGTTTATCCGT 59.716 37.037 21.36 3.70 43.28 4.69
102 103 7.590689 GTCTCCGATAACTCTTAAGTTTATCCG 59.409 40.741 21.36 17.85 43.28 4.18
103 104 7.866898 GGTCTCCGATAACTCTTAAGTTTATCC 59.133 40.741 21.36 13.30 43.28 2.59
104 105 8.800231 GGTCTCCGATAACTCTTAAGTTTATC 57.200 38.462 19.37 19.37 43.28 1.75
123 124 1.666311 CGAGTCAGTGTTTCGGTCTCC 60.666 57.143 9.99 0.00 0.00 3.71
124 125 1.266175 TCGAGTCAGTGTTTCGGTCTC 59.734 52.381 15.39 0.00 35.21 3.36
125 126 1.315690 TCGAGTCAGTGTTTCGGTCT 58.684 50.000 15.39 0.00 35.21 3.85
126 127 2.129823 TTCGAGTCAGTGTTTCGGTC 57.870 50.000 15.39 0.00 35.21 4.79
127 128 2.589798 TTTCGAGTCAGTGTTTCGGT 57.410 45.000 15.39 0.00 35.21 4.69
128 129 3.303132 CCTTTTTCGAGTCAGTGTTTCGG 60.303 47.826 15.39 3.57 35.21 4.30
129 130 3.308866 ACCTTTTTCGAGTCAGTGTTTCG 59.691 43.478 11.16 11.16 35.76 3.46
130 131 4.588278 CACCTTTTTCGAGTCAGTGTTTC 58.412 43.478 0.00 0.00 0.00 2.78
131 132 3.181500 GCACCTTTTTCGAGTCAGTGTTT 60.181 43.478 0.00 0.00 0.00 2.83
132 133 2.354821 GCACCTTTTTCGAGTCAGTGTT 59.645 45.455 0.00 0.00 0.00 3.32
133 134 1.940613 GCACCTTTTTCGAGTCAGTGT 59.059 47.619 0.00 0.00 0.00 3.55
134 135 1.070577 CGCACCTTTTTCGAGTCAGTG 60.071 52.381 0.00 0.00 0.00 3.66
135 136 1.217882 CGCACCTTTTTCGAGTCAGT 58.782 50.000 0.00 0.00 0.00 3.41
136 137 0.110644 GCGCACCTTTTTCGAGTCAG 60.111 55.000 0.30 0.00 0.00 3.51
137 138 1.503818 GGCGCACCTTTTTCGAGTCA 61.504 55.000 10.83 0.00 0.00 3.41
138 139 1.206831 GGCGCACCTTTTTCGAGTC 59.793 57.895 10.83 0.00 0.00 3.36
139 140 2.604174 CGGCGCACCTTTTTCGAGT 61.604 57.895 10.83 0.00 0.00 4.18
140 141 2.173382 CGGCGCACCTTTTTCGAG 59.827 61.111 10.83 0.00 0.00 4.04
141 142 4.020378 GCGGCGCACCTTTTTCGA 62.020 61.111 29.21 0.00 0.00 3.71
143 144 3.281359 ATGGCGGCGCACCTTTTTC 62.281 57.895 34.36 13.93 0.00 2.29
144 145 3.281359 GATGGCGGCGCACCTTTTT 62.281 57.895 34.36 9.13 0.00 1.94
145 146 3.747976 GATGGCGGCGCACCTTTT 61.748 61.111 34.36 10.65 0.00 2.27
153 154 2.816083 TTTGTACGGATGGCGGCG 60.816 61.111 0.51 0.51 0.00 6.46
154 155 2.789249 GTTTGTACGGATGGCGGC 59.211 61.111 0.00 0.00 0.00 6.53
155 156 3.086309 CGTTTGTACGGATGGCGG 58.914 61.111 0.00 0.00 43.94 6.13
164 165 2.102438 GTAGGGGCGGCGTTTGTAC 61.102 63.158 9.37 2.32 0.00 2.90
165 166 2.265424 GTAGGGGCGGCGTTTGTA 59.735 61.111 9.37 0.00 0.00 2.41
167 168 4.745751 TCGTAGGGGCGGCGTTTG 62.746 66.667 9.37 0.00 0.00 2.93
168 169 4.446413 CTCGTAGGGGCGGCGTTT 62.446 66.667 9.37 0.00 0.00 3.60
175 176 0.738762 GTTTTCGTCCTCGTAGGGGC 60.739 60.000 1.76 0.00 35.59 5.80
176 177 0.108472 GGTTTTCGTCCTCGTAGGGG 60.108 60.000 1.76 0.00 35.59 4.79
177 178 0.108472 GGGTTTTCGTCCTCGTAGGG 60.108 60.000 1.76 0.00 35.59 3.53
178 179 0.893447 AGGGTTTTCGTCCTCGTAGG 59.107 55.000 0.00 0.00 38.33 3.18
179 180 2.159324 GGTAGGGTTTTCGTCCTCGTAG 60.159 54.545 0.00 0.00 38.33 3.51
180 181 1.818674 GGTAGGGTTTTCGTCCTCGTA 59.181 52.381 0.00 0.00 38.33 3.43
181 182 0.605083 GGTAGGGTTTTCGTCCTCGT 59.395 55.000 0.00 0.00 38.33 4.18
182 183 0.893447 AGGTAGGGTTTTCGTCCTCG 59.107 55.000 0.00 0.00 34.75 4.63
183 184 3.959449 AGATAGGTAGGGTTTTCGTCCTC 59.041 47.826 0.00 0.00 34.75 3.71
184 185 3.991683 AGATAGGTAGGGTTTTCGTCCT 58.008 45.455 0.00 0.00 37.18 3.85
185 186 6.416631 AATAGATAGGTAGGGTTTTCGTCC 57.583 41.667 0.00 0.00 0.00 4.79
186 187 7.089538 GCTAATAGATAGGTAGGGTTTTCGTC 58.910 42.308 0.00 0.00 31.83 4.20
187 188 6.552350 TGCTAATAGATAGGTAGGGTTTTCGT 59.448 38.462 0.00 0.00 31.83 3.85
188 189 6.989659 TGCTAATAGATAGGTAGGGTTTTCG 58.010 40.000 0.00 0.00 31.83 3.46
189 190 8.594550 TCATGCTAATAGATAGGTAGGGTTTTC 58.405 37.037 0.00 0.00 31.83 2.29
190 191 8.506196 TCATGCTAATAGATAGGTAGGGTTTT 57.494 34.615 0.00 0.00 31.83 2.43
191 192 7.735321 ACTCATGCTAATAGATAGGTAGGGTTT 59.265 37.037 0.00 0.00 31.83 3.27
192 193 7.249715 ACTCATGCTAATAGATAGGTAGGGTT 58.750 38.462 0.00 0.00 31.83 4.11
193 194 6.806217 ACTCATGCTAATAGATAGGTAGGGT 58.194 40.000 0.00 0.00 31.83 4.34
194 195 6.892456 TGACTCATGCTAATAGATAGGTAGGG 59.108 42.308 0.00 0.00 31.83 3.53
195 196 7.946381 TGACTCATGCTAATAGATAGGTAGG 57.054 40.000 0.00 0.00 31.83 3.18
196 197 9.237187 TCTTGACTCATGCTAATAGATAGGTAG 57.763 37.037 0.00 0.00 31.83 3.18
197 198 9.015367 GTCTTGACTCATGCTAATAGATAGGTA 57.985 37.037 0.00 0.00 31.83 3.08
198 199 7.507277 TGTCTTGACTCATGCTAATAGATAGGT 59.493 37.037 2.35 0.00 31.83 3.08
199 200 7.812191 GTGTCTTGACTCATGCTAATAGATAGG 59.188 40.741 2.35 0.00 31.83 2.57
200 201 7.812191 GGTGTCTTGACTCATGCTAATAGATAG 59.188 40.741 2.35 0.00 34.52 2.08
201 202 7.287696 TGGTGTCTTGACTCATGCTAATAGATA 59.712 37.037 2.35 0.00 0.00 1.98
202 203 6.098838 TGGTGTCTTGACTCATGCTAATAGAT 59.901 38.462 2.35 0.00 0.00 1.98
203 204 5.422012 TGGTGTCTTGACTCATGCTAATAGA 59.578 40.000 2.35 0.00 0.00 1.98
204 205 5.664457 TGGTGTCTTGACTCATGCTAATAG 58.336 41.667 2.35 0.00 0.00 1.73
205 206 5.395657 CCTGGTGTCTTGACTCATGCTAATA 60.396 44.000 2.35 0.00 0.00 0.98
206 207 4.511527 CTGGTGTCTTGACTCATGCTAAT 58.488 43.478 2.35 0.00 0.00 1.73
207 208 3.306989 CCTGGTGTCTTGACTCATGCTAA 60.307 47.826 2.35 0.00 0.00 3.09
208 209 2.234661 CCTGGTGTCTTGACTCATGCTA 59.765 50.000 2.35 0.00 0.00 3.49
209 210 1.002888 CCTGGTGTCTTGACTCATGCT 59.997 52.381 2.35 0.00 0.00 3.79
210 211 1.002430 TCCTGGTGTCTTGACTCATGC 59.998 52.381 2.35 0.00 0.00 4.06
211 212 3.623906 ATCCTGGTGTCTTGACTCATG 57.376 47.619 2.35 0.00 0.00 3.07
212 213 3.843027 AGAATCCTGGTGTCTTGACTCAT 59.157 43.478 2.35 0.00 0.00 2.90
213 214 3.242867 AGAATCCTGGTGTCTTGACTCA 58.757 45.455 2.35 0.90 0.00 3.41
214 215 3.855858 GAGAATCCTGGTGTCTTGACTC 58.144 50.000 2.35 0.00 0.00 3.36
215 216 3.971245 GAGAATCCTGGTGTCTTGACT 57.029 47.619 2.35 0.00 0.00 3.41
229 230 4.547367 CCGGTGGCGGGGAGAATC 62.547 72.222 0.00 0.00 0.00 2.52
247 248 4.435970 TGGCTGCTGCTCCCATGG 62.436 66.667 15.64 4.14 39.59 3.66
248 249 2.829003 CTGGCTGCTGCTCCCATG 60.829 66.667 15.64 0.00 39.59 3.66
249 250 3.013327 TCTGGCTGCTGCTCCCAT 61.013 61.111 15.64 0.00 39.59 4.00
250 251 4.025858 GTCTGGCTGCTGCTCCCA 62.026 66.667 15.64 10.54 39.59 4.37
256 257 4.463879 CCTCCCGTCTGGCTGCTG 62.464 72.222 0.00 0.00 0.00 4.41
261 262 4.162690 ATTCGCCTCCCGTCTGGC 62.163 66.667 0.00 0.00 45.25 4.85
262 263 2.107141 GATTCGCCTCCCGTCTGG 59.893 66.667 0.00 0.00 38.35 3.86
263 264 2.107141 GGATTCGCCTCCCGTCTG 59.893 66.667 0.00 0.00 38.35 3.51
264 265 2.363795 TGGATTCGCCTCCCGTCT 60.364 61.111 1.25 0.00 38.35 4.18
265 266 2.202892 GTGGATTCGCCTCCCGTC 60.203 66.667 1.25 0.00 38.35 4.79
266 267 3.000819 TGTGGATTCGCCTCCCGT 61.001 61.111 1.25 0.00 38.35 5.28
267 268 2.202932 CTGTGGATTCGCCTCCCG 60.203 66.667 1.25 0.00 37.63 5.14
268 269 2.190578 CCTGTGGATTCGCCTCCC 59.809 66.667 1.25 0.00 37.63 4.30
269 270 2.514824 GCCTGTGGATTCGCCTCC 60.515 66.667 0.00 0.00 37.63 4.30
270 271 1.522580 GAGCCTGTGGATTCGCCTC 60.523 63.158 0.00 0.00 37.63 4.70
271 272 2.586792 GAGCCTGTGGATTCGCCT 59.413 61.111 0.00 0.00 37.63 5.52
272 273 2.892425 CGAGCCTGTGGATTCGCC 60.892 66.667 0.00 0.00 37.10 5.54
273 274 3.567797 GCGAGCCTGTGGATTCGC 61.568 66.667 15.84 15.84 44.76 4.70
274 275 2.892425 GGCGAGCCTGTGGATTCG 60.892 66.667 6.90 6.59 35.50 3.34
275 276 2.892425 CGGCGAGCCTGTGGATTC 60.892 66.667 12.70 0.00 0.00 2.52
276 277 4.473520 CCGGCGAGCCTGTGGATT 62.474 66.667 9.30 0.00 0.00 3.01
281 282 4.379243 CTTCACCGGCGAGCCTGT 62.379 66.667 9.30 9.01 33.77 4.00
282 283 3.376935 ATCTTCACCGGCGAGCCTG 62.377 63.158 9.30 8.30 0.00 4.85
283 284 3.077556 ATCTTCACCGGCGAGCCT 61.078 61.111 9.30 0.00 0.00 4.58
284 285 2.586357 GATCTTCACCGGCGAGCC 60.586 66.667 9.30 3.59 0.00 4.70
285 286 2.956964 CGATCTTCACCGGCGAGC 60.957 66.667 9.30 0.00 0.00 5.03
286 287 1.298713 CTCGATCTTCACCGGCGAG 60.299 63.158 9.30 6.14 41.77 5.03
287 288 2.771639 CCTCGATCTTCACCGGCGA 61.772 63.158 9.30 0.00 0.00 5.54
288 289 2.278857 CCTCGATCTTCACCGGCG 60.279 66.667 0.00 0.00 0.00 6.46
289 290 2.107141 CCCTCGATCTTCACCGGC 59.893 66.667 0.00 0.00 0.00 6.13
290 291 1.739338 CTCCCCTCGATCTTCACCGG 61.739 65.000 0.00 0.00 0.00 5.28
291 292 0.752009 TCTCCCCTCGATCTTCACCG 60.752 60.000 0.00 0.00 0.00 4.94
292 293 1.486211 TTCTCCCCTCGATCTTCACC 58.514 55.000 0.00 0.00 0.00 4.02
293 294 2.159028 CCTTTCTCCCCTCGATCTTCAC 60.159 54.545 0.00 0.00 0.00 3.18
294 295 2.111384 CCTTTCTCCCCTCGATCTTCA 58.889 52.381 0.00 0.00 0.00 3.02
295 296 1.202592 GCCTTTCTCCCCTCGATCTTC 60.203 57.143 0.00 0.00 0.00 2.87
296 297 0.833949 GCCTTTCTCCCCTCGATCTT 59.166 55.000 0.00 0.00 0.00 2.40
297 298 0.031616 AGCCTTTCTCCCCTCGATCT 60.032 55.000 0.00 0.00 0.00 2.75
298 299 0.833949 AAGCCTTTCTCCCCTCGATC 59.166 55.000 0.00 0.00 0.00 3.69
299 300 1.210722 GAAAGCCTTTCTCCCCTCGAT 59.789 52.381 9.95 0.00 36.73 3.59
300 301 0.613777 GAAAGCCTTTCTCCCCTCGA 59.386 55.000 9.95 0.00 36.73 4.04
301 302 0.393132 GGAAAGCCTTTCTCCCCTCG 60.393 60.000 16.28 0.00 39.59 4.63
302 303 0.995803 AGGAAAGCCTTTCTCCCCTC 59.004 55.000 16.28 0.00 43.90 4.30
303 304 2.361085 TAGGAAAGCCTTTCTCCCCT 57.639 50.000 16.28 8.51 43.90 4.79
304 305 2.309162 ACTTAGGAAAGCCTTTCTCCCC 59.691 50.000 16.28 1.00 43.90 4.81
305 306 3.722908 ACTTAGGAAAGCCTTTCTCCC 57.277 47.619 16.28 1.37 43.90 4.30
306 307 4.399219 ACAACTTAGGAAAGCCTTTCTCC 58.601 43.478 16.28 2.09 43.90 3.71
307 308 4.456222 GGACAACTTAGGAAAGCCTTTCTC 59.544 45.833 16.28 7.25 43.90 2.87
308 309 4.104897 AGGACAACTTAGGAAAGCCTTTCT 59.895 41.667 16.28 5.89 43.90 2.52
309 310 4.216472 CAGGACAACTTAGGAAAGCCTTTC 59.784 45.833 8.72 8.72 43.90 2.62
310 311 4.145052 CAGGACAACTTAGGAAAGCCTTT 58.855 43.478 0.00 0.00 43.90 3.11
311 312 3.498661 CCAGGACAACTTAGGAAAGCCTT 60.499 47.826 0.00 0.00 43.90 4.35
313 314 2.437413 CCAGGACAACTTAGGAAAGCC 58.563 52.381 0.00 0.00 36.05 4.35
314 315 2.039879 TCCCAGGACAACTTAGGAAAGC 59.960 50.000 0.00 0.00 36.05 3.51
315 316 3.583086 TCTCCCAGGACAACTTAGGAAAG 59.417 47.826 0.00 0.00 38.77 2.62
316 317 3.583086 CTCTCCCAGGACAACTTAGGAAA 59.417 47.826 0.00 0.00 30.58 3.13
317 318 3.173965 CTCTCCCAGGACAACTTAGGAA 58.826 50.000 0.00 0.00 30.58 3.36
318 319 2.382305 TCTCTCCCAGGACAACTTAGGA 59.618 50.000 0.00 0.00 0.00 2.94
319 320 2.763448 CTCTCTCCCAGGACAACTTAGG 59.237 54.545 0.00 0.00 0.00 2.69
320 321 3.702792 TCTCTCTCCCAGGACAACTTAG 58.297 50.000 0.00 0.00 0.00 2.18
321 322 3.827817 TCTCTCTCCCAGGACAACTTA 57.172 47.619 0.00 0.00 0.00 2.24
322 323 2.704190 TCTCTCTCCCAGGACAACTT 57.296 50.000 0.00 0.00 0.00 2.66
323 324 2.704190 TTCTCTCTCCCAGGACAACT 57.296 50.000 0.00 0.00 0.00 3.16
324 325 3.325135 TCTTTTCTCTCTCCCAGGACAAC 59.675 47.826 0.00 0.00 0.00 3.32
325 326 3.587498 TCTTTTCTCTCTCCCAGGACAA 58.413 45.455 0.00 0.00 0.00 3.18
326 327 3.260269 TCTTTTCTCTCTCCCAGGACA 57.740 47.619 0.00 0.00 0.00 4.02
327 328 4.625607 TTTCTTTTCTCTCTCCCAGGAC 57.374 45.455 0.00 0.00 0.00 3.85
328 329 5.132816 ACTTTTTCTTTTCTCTCTCCCAGGA 59.867 40.000 0.00 0.00 0.00 3.86
329 330 5.240403 CACTTTTTCTTTTCTCTCTCCCAGG 59.760 44.000 0.00 0.00 0.00 4.45
330 331 5.825151 ACACTTTTTCTTTTCTCTCTCCCAG 59.175 40.000 0.00 0.00 0.00 4.45
331 332 5.755849 ACACTTTTTCTTTTCTCTCTCCCA 58.244 37.500 0.00 0.00 0.00 4.37
332 333 6.766467 TGTACACTTTTTCTTTTCTCTCTCCC 59.234 38.462 0.00 0.00 0.00 4.30
333 334 7.787725 TGTACACTTTTTCTTTTCTCTCTCC 57.212 36.000 0.00 0.00 0.00 3.71
334 335 8.286097 CCATGTACACTTTTTCTTTTCTCTCTC 58.714 37.037 0.00 0.00 0.00 3.20
335 336 7.993183 TCCATGTACACTTTTTCTTTTCTCTCT 59.007 33.333 0.00 0.00 0.00 3.10
336 337 8.154649 TCCATGTACACTTTTTCTTTTCTCTC 57.845 34.615 0.00 0.00 0.00 3.20
337 338 7.775561 ACTCCATGTACACTTTTTCTTTTCTCT 59.224 33.333 0.00 0.00 0.00 3.10
338 339 7.931275 ACTCCATGTACACTTTTTCTTTTCTC 58.069 34.615 0.00 0.00 0.00 2.87
339 340 7.881775 ACTCCATGTACACTTTTTCTTTTCT 57.118 32.000 0.00 0.00 0.00 2.52
367 368 1.406180 CGGTCAAACGGAACCCTTTTT 59.594 47.619 0.00 0.00 0.00 1.94
368 369 1.026584 CGGTCAAACGGAACCCTTTT 58.973 50.000 0.00 0.00 0.00 2.27
369 370 0.180878 TCGGTCAAACGGAACCCTTT 59.819 50.000 0.00 0.00 0.00 3.11
370 371 0.180878 TTCGGTCAAACGGAACCCTT 59.819 50.000 0.00 0.00 33.38 3.95
371 372 0.399075 ATTCGGTCAAACGGAACCCT 59.601 50.000 2.70 0.00 39.65 4.34
372 373 2.097680 TATTCGGTCAAACGGAACCC 57.902 50.000 2.70 0.00 39.65 4.11
373 374 4.486574 TTTTATTCGGTCAAACGGAACC 57.513 40.909 2.70 0.00 39.65 3.62
374 375 6.376177 AGAATTTTATTCGGTCAAACGGAAC 58.624 36.000 2.70 0.00 39.65 3.62
375 376 6.563222 AGAATTTTATTCGGTCAAACGGAA 57.437 33.333 3.08 3.08 40.79 4.30
376 377 6.205076 TCAAGAATTTTATTCGGTCAAACGGA 59.795 34.615 0.00 0.00 0.00 4.69
377 378 6.375377 TCAAGAATTTTATTCGGTCAAACGG 58.625 36.000 0.00 0.00 0.00 4.44
378 379 7.295201 TCTCAAGAATTTTATTCGGTCAAACG 58.705 34.615 0.00 0.00 0.00 3.60
379 380 7.271438 GCTCTCAAGAATTTTATTCGGTCAAAC 59.729 37.037 0.00 0.00 0.00 2.93
380 381 7.040755 TGCTCTCAAGAATTTTATTCGGTCAAA 60.041 33.333 0.00 0.00 0.00 2.69
381 382 6.429692 TGCTCTCAAGAATTTTATTCGGTCAA 59.570 34.615 0.00 0.00 0.00 3.18
382 383 5.937540 TGCTCTCAAGAATTTTATTCGGTCA 59.062 36.000 0.00 0.00 0.00 4.02
383 384 6.422776 TGCTCTCAAGAATTTTATTCGGTC 57.577 37.500 0.00 0.00 0.00 4.79
384 385 6.817765 TTGCTCTCAAGAATTTTATTCGGT 57.182 33.333 0.00 0.00 0.00 4.69
385 386 7.062255 GGTTTTGCTCTCAAGAATTTTATTCGG 59.938 37.037 0.00 0.00 33.12 4.30
386 387 7.062255 GGGTTTTGCTCTCAAGAATTTTATTCG 59.938 37.037 0.00 0.00 33.12 3.34
387 388 8.090831 AGGGTTTTGCTCTCAAGAATTTTATTC 58.909 33.333 0.00 0.00 33.12 1.75
388 389 7.874528 CAGGGTTTTGCTCTCAAGAATTTTATT 59.125 33.333 0.00 0.00 33.12 1.40
389 390 7.381323 CAGGGTTTTGCTCTCAAGAATTTTAT 58.619 34.615 0.00 0.00 33.12 1.40
390 391 6.738453 GCAGGGTTTTGCTCTCAAGAATTTTA 60.738 38.462 0.00 0.00 40.89 1.52
391 392 5.604565 CAGGGTTTTGCTCTCAAGAATTTT 58.395 37.500 0.00 0.00 33.12 1.82
392 393 4.502087 GCAGGGTTTTGCTCTCAAGAATTT 60.502 41.667 0.00 0.00 40.89 1.82
393 394 3.006217 GCAGGGTTTTGCTCTCAAGAATT 59.994 43.478 0.00 0.00 40.89 2.17
394 395 2.560105 GCAGGGTTTTGCTCTCAAGAAT 59.440 45.455 0.00 0.00 40.89 2.40
395 396 1.956477 GCAGGGTTTTGCTCTCAAGAA 59.044 47.619 0.00 0.00 40.89 2.52
396 397 1.609208 GCAGGGTTTTGCTCTCAAGA 58.391 50.000 0.00 0.00 40.89 3.02
404 405 2.150014 TAGGGGGAGCAGGGTTTTGC 62.150 60.000 0.00 0.00 44.41 3.68
405 406 0.631212 ATAGGGGGAGCAGGGTTTTG 59.369 55.000 0.00 0.00 0.00 2.44
406 407 2.243994 GTTATAGGGGGAGCAGGGTTTT 59.756 50.000 0.00 0.00 0.00 2.43
407 408 1.850998 GTTATAGGGGGAGCAGGGTTT 59.149 52.381 0.00 0.00 0.00 3.27
408 409 1.274767 TGTTATAGGGGGAGCAGGGTT 60.275 52.381 0.00 0.00 0.00 4.11
409 410 0.345502 TGTTATAGGGGGAGCAGGGT 59.654 55.000 0.00 0.00 0.00 4.34
410 411 1.059913 CTGTTATAGGGGGAGCAGGG 58.940 60.000 0.00 0.00 0.00 4.45
411 412 1.059913 CCTGTTATAGGGGGAGCAGG 58.940 60.000 0.00 0.00 43.33 4.85
420 421 4.371624 TGATCATTGCCCCTGTTATAGG 57.628 45.455 0.00 0.00 46.88 2.57
421 422 4.946157 GGATGATCATTGCCCCTGTTATAG 59.054 45.833 10.14 0.00 0.00 1.31
422 423 4.565444 CGGATGATCATTGCCCCTGTTATA 60.565 45.833 10.14 0.00 0.00 0.98
423 424 3.771216 GGATGATCATTGCCCCTGTTAT 58.229 45.455 10.14 0.00 0.00 1.89
424 425 2.487086 CGGATGATCATTGCCCCTGTTA 60.487 50.000 10.14 0.00 0.00 2.41
425 426 1.751733 CGGATGATCATTGCCCCTGTT 60.752 52.381 10.14 0.00 0.00 3.16
426 427 0.179009 CGGATGATCATTGCCCCTGT 60.179 55.000 10.14 0.00 0.00 4.00
427 428 1.521450 GCGGATGATCATTGCCCCTG 61.521 60.000 18.26 8.65 0.00 4.45
428 429 1.228367 GCGGATGATCATTGCCCCT 60.228 57.895 18.26 0.00 0.00 4.79
429 430 1.108727 TTGCGGATGATCATTGCCCC 61.109 55.000 23.26 13.92 0.00 5.80
430 431 0.746063 TTTGCGGATGATCATTGCCC 59.254 50.000 23.26 14.22 0.00 5.36
431 432 2.806608 ATTTGCGGATGATCATTGCC 57.193 45.000 23.26 14.81 0.00 4.52
432 433 8.400947 AGTATATTATTTGCGGATGATCATTGC 58.599 33.333 20.85 20.85 0.00 3.56
463 464 9.864034 CCGTAATCAACATTCACTTGAATATAC 57.136 33.333 4.14 2.31 42.41 1.47
467 468 7.390440 TCTTCCGTAATCAACATTCACTTGAAT 59.610 33.333 0.00 0.00 44.93 2.57
478 479 9.834628 GAAATACAAATTCTTCCGTAATCAACA 57.165 29.630 0.00 0.00 0.00 3.33
533 534 3.959943 ACATTTTCTTTTCAACCGGACG 58.040 40.909 9.46 0.00 0.00 4.79
566 568 5.222631 ACTTTTCCATGCTTTCGTGAATTC 58.777 37.500 0.00 0.00 0.00 2.17
631 637 4.430423 CGGTTCAAGCGCGTCTGC 62.430 66.667 8.43 0.00 37.91 4.26
678 693 2.113139 AACAGGGAAGTGCCACCG 59.887 61.111 0.00 0.00 38.95 4.94
732 761 2.289631 TGACGTGGCAAGAATGTCAGAT 60.290 45.455 7.60 0.00 43.00 2.90
740 769 1.134521 AGTGAAGTGACGTGGCAAGAA 60.135 47.619 7.60 0.00 0.00 2.52
813 861 6.159293 CGACAGGAGCATTAATTATCAGCTA 58.841 40.000 6.76 0.00 35.36 3.32
916 986 6.398918 GTTTCTATCTAGTGAAGGTGAAGCA 58.601 40.000 0.00 0.00 0.00 3.91
917 987 5.813157 GGTTTCTATCTAGTGAAGGTGAAGC 59.187 44.000 0.00 0.00 0.00 3.86
919 989 6.070767 CCTGGTTTCTATCTAGTGAAGGTGAA 60.071 42.308 0.00 0.00 0.00 3.18
922 992 5.187967 CACCTGGTTTCTATCTAGTGAAGGT 59.812 44.000 0.00 0.00 0.00 3.50
923 993 5.665459 CACCTGGTTTCTATCTAGTGAAGG 58.335 45.833 0.00 0.00 0.00 3.46
949 1023 3.293337 TCGGTATGTGCTAGCTAAAGGA 58.707 45.455 17.23 2.05 0.00 3.36
950 1024 3.318275 TCTCGGTATGTGCTAGCTAAAGG 59.682 47.826 17.23 0.00 0.00 3.11
970 1052 2.159170 GCCGATCTAACAGAGCAGTTCT 60.159 50.000 0.00 0.00 36.25 3.01
1035 1141 0.452987 CGCATTTCACCAGTGGGATG 59.547 55.000 15.21 12.48 38.05 3.51
1179 1294 4.724602 TCCAGCGCGTCTGTGAGC 62.725 66.667 22.70 0.00 41.25 4.26
1227 1342 0.959372 CCTCCAGCTTGCTCTTGTGG 60.959 60.000 0.00 0.00 0.00 4.17
1704 4268 0.599204 AGTCGCCAACGTTGACGAAT 60.599 50.000 35.28 32.25 44.25 3.34
1716 4280 3.897681 TACCTGCAGGGAGTCGCCA 62.898 63.158 35.42 7.95 40.27 5.69
1736 4300 2.816087 GGTGATGGTAATGCTATGGCTG 59.184 50.000 1.68 0.00 39.59 4.85
1737 4301 2.442878 TGGTGATGGTAATGCTATGGCT 59.557 45.455 1.68 0.00 39.59 4.75
1744 4308 0.657840 GCGAGTGGTGATGGTAATGC 59.342 55.000 0.00 0.00 0.00 3.56
1768 4338 3.679980 CGATGAGGGTAACAAAGTGACTG 59.320 47.826 0.00 0.00 39.74 3.51
1794 4364 2.180946 TGGATCCCAGATGCAGTAGT 57.819 50.000 9.90 0.00 0.00 2.73
1795 4365 2.027377 GGATGGATCCCAGATGCAGTAG 60.027 54.545 9.90 0.00 41.20 2.57
1797 4367 0.769873 GGATGGATCCCAGATGCAGT 59.230 55.000 9.90 0.00 41.20 4.40
1798 4368 0.769247 TGGATGGATCCCAGATGCAG 59.231 55.000 9.90 0.00 46.59 4.41
1799 4369 1.074889 CATGGATGGATCCCAGATGCA 59.925 52.381 9.90 8.28 46.59 3.96
1803 4373 0.769247 CTGCATGGATGGATCCCAGA 59.231 55.000 9.90 0.00 46.59 3.86
1815 4388 0.609151 TGGTTCAAATGGCTGCATGG 59.391 50.000 0.50 0.00 0.00 3.66
1816 4389 2.343101 CTTGGTTCAAATGGCTGCATG 58.657 47.619 0.50 0.00 0.00 4.06
1818 4391 0.033781 GCTTGGTTCAAATGGCTGCA 59.966 50.000 0.50 0.00 0.00 4.41
1821 4394 1.812571 CTACGCTTGGTTCAAATGGCT 59.187 47.619 0.00 0.00 0.00 4.75
1822 4395 1.539827 ACTACGCTTGGTTCAAATGGC 59.460 47.619 0.00 0.00 0.00 4.40
1823 4396 2.552315 ACACTACGCTTGGTTCAAATGG 59.448 45.455 0.00 0.00 0.00 3.16
1825 4398 3.630312 ACAACACTACGCTTGGTTCAAAT 59.370 39.130 0.00 0.00 0.00 2.32
1826 4399 3.011119 ACAACACTACGCTTGGTTCAAA 58.989 40.909 0.00 0.00 0.00 2.69
1827 4400 2.353269 CACAACACTACGCTTGGTTCAA 59.647 45.455 0.00 0.00 0.00 2.69
1859 4502 4.836125 ATTAAATAATGCGCCAGACCAG 57.164 40.909 4.18 0.00 0.00 4.00
1950 5006 5.524281 TCGCACGGCAATGAGTTTATAATTA 59.476 36.000 0.00 0.00 0.00 1.40
1954 5010 2.605818 GTCGCACGGCAATGAGTTTATA 59.394 45.455 0.00 0.00 0.00 0.98
2009 5066 2.421775 CGAGACACATCAGTCAGTAGCT 59.578 50.000 0.00 0.00 40.98 3.32
2010 5067 2.162608 ACGAGACACATCAGTCAGTAGC 59.837 50.000 0.00 0.00 40.98 3.58
2011 5068 4.427096 AACGAGACACATCAGTCAGTAG 57.573 45.455 0.00 0.00 40.98 2.57
2013 5070 3.181475 ACAAACGAGACACATCAGTCAGT 60.181 43.478 0.00 0.00 40.98 3.41
2014 5071 3.384668 ACAAACGAGACACATCAGTCAG 58.615 45.455 0.00 0.00 40.98 3.51
2015 5072 3.452755 ACAAACGAGACACATCAGTCA 57.547 42.857 0.00 0.00 40.98 3.41
2016 5073 4.795970 AAACAAACGAGACACATCAGTC 57.204 40.909 0.00 0.00 38.81 3.51
2208 5362 0.905357 CCCAGGTGAAGTCCCTGTAG 59.095 60.000 12.19 3.51 46.68 2.74
2407 5576 8.793592 GGATCCATGGATTAAATAAACAGGTAC 58.206 37.037 27.93 9.25 34.60 3.34
2408 5577 8.506921 TGGATCCATGGATTAAATAAACAGGTA 58.493 33.333 27.93 0.00 34.60 3.08
2409 5578 7.361438 TGGATCCATGGATTAAATAAACAGGT 58.639 34.615 27.93 1.12 34.60 4.00
2410 5579 7.725397 TCTGGATCCATGGATTAAATAAACAGG 59.275 37.037 27.93 9.12 34.60 4.00
2411 5580 8.571336 GTCTGGATCCATGGATTAAATAAACAG 58.429 37.037 27.93 21.37 34.60 3.16
2412 5581 8.058235 TGTCTGGATCCATGGATTAAATAAACA 58.942 33.333 27.93 20.20 34.60 2.83
2413 5582 8.463930 TGTCTGGATCCATGGATTAAATAAAC 57.536 34.615 27.93 18.24 34.60 2.01
2416 5585 9.910267 CATATGTCTGGATCCATGGATTAAATA 57.090 33.333 27.93 17.21 34.60 1.40
2417 5586 8.396388 ACATATGTCTGGATCCATGGATTAAAT 58.604 33.333 27.93 15.82 34.60 1.40
2418 5587 7.666804 CACATATGTCTGGATCCATGGATTAAA 59.333 37.037 27.93 15.21 34.60 1.52
2442 5611 9.237187 AGTCCTACTACTACTTTTAGTTACCAC 57.763 37.037 0.00 0.00 39.43 4.16
2456 5626 7.397221 TGTAGCAACAACTAGTCCTACTACTA 58.603 38.462 17.03 5.02 30.91 1.82
2460 5630 5.105310 CCATGTAGCAACAACTAGTCCTACT 60.105 44.000 0.00 0.00 39.58 2.57
2462 5632 4.382685 GCCATGTAGCAACAACTAGTCCTA 60.383 45.833 0.00 0.00 39.58 2.94
2463 5633 3.619979 GCCATGTAGCAACAACTAGTCCT 60.620 47.826 0.00 0.00 39.58 3.85
2465 5635 3.372206 CAGCCATGTAGCAACAACTAGTC 59.628 47.826 0.00 0.00 39.58 2.59
2467 5637 3.599343 TCAGCCATGTAGCAACAACTAG 58.401 45.455 0.00 0.00 39.58 2.57
2469 5639 2.224621 ACTCAGCCATGTAGCAACAACT 60.225 45.455 0.00 0.00 39.58 3.16
2472 5642 3.251479 CTACTCAGCCATGTAGCAACA 57.749 47.619 0.00 0.00 40.69 3.33
2580 5759 0.599991 TGTACGTGGAAGTGCTGCTG 60.600 55.000 0.00 0.00 0.00 4.41
2620 5806 3.373748 GCAAACAAACAAAAGGGGACAAG 59.626 43.478 0.00 0.00 0.00 3.16
2636 5822 1.944024 CCGGTGTAAAGTGAGCAAACA 59.056 47.619 0.00 0.00 0.00 2.83
2646 5832 1.579429 GTTGCCTGCCGGTGTAAAG 59.421 57.895 1.90 0.00 0.00 1.85
2697 5883 8.534333 TCGAATAACTAATTAAGCTGCCTATG 57.466 34.615 0.00 0.00 0.00 2.23
2736 5922 9.515226 TGGAGTTGCTCTAACACTTTATTTATT 57.485 29.630 0.00 0.00 41.88 1.40
2737 5923 9.515226 TTGGAGTTGCTCTAACACTTTATTTAT 57.485 29.630 0.00 0.00 41.88 1.40
2738 5924 8.780249 GTTGGAGTTGCTCTAACACTTTATTTA 58.220 33.333 16.75 0.00 46.43 1.40
2739 5925 7.649057 GTTGGAGTTGCTCTAACACTTTATTT 58.351 34.615 16.75 0.00 46.43 1.40
2740 5926 7.203255 GTTGGAGTTGCTCTAACACTTTATT 57.797 36.000 16.75 0.00 46.43 1.40
2741 5927 6.803154 GTTGGAGTTGCTCTAACACTTTAT 57.197 37.500 16.75 0.00 46.43 1.40
2785 5972 1.227438 CCGACCCAAACAGACGTGT 60.227 57.895 0.00 0.00 39.19 4.49
2826 6014 2.095843 GTGAATTGGTCGACGCGC 59.904 61.111 5.73 0.00 0.00 6.86
2837 6025 1.201414 GCCGGACGGATTTTGTGAATT 59.799 47.619 15.99 0.00 37.50 2.17
2842 6030 1.674322 CCAGCCGGACGGATTTTGT 60.674 57.895 15.99 0.00 37.50 2.83
2935 6145 2.668632 GGACATTGAGGGGACGCA 59.331 61.111 0.00 0.00 38.85 5.24
2956 6186 4.643387 GCAGACAAGTGGGCCCGT 62.643 66.667 19.37 8.84 0.00 5.28
2982 6212 3.986006 TGTGAGACGCGGGTGGTC 61.986 66.667 10.96 7.25 34.62 4.02
2990 6220 1.136984 CGAGGTAGGTGTGAGACGC 59.863 63.158 0.00 0.00 0.00 5.19
2996 6226 3.782443 GGGCCCGAGGTAGGTGTG 61.782 72.222 5.69 0.00 0.00 3.82
3052 6296 4.817063 CGCCGCACGCTTCCATTG 62.817 66.667 0.00 0.00 34.21 2.82
3335 6605 1.191489 TGAGGCAGGTTGACATCCGA 61.191 55.000 0.00 0.00 0.00 4.55
3355 6625 4.208746 GCTACGGATATAGATACCAGCCT 58.791 47.826 0.00 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.