Multiple sequence alignment - TraesCS1A01G392400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G392400 chr1A 100.000 4123 0 0 940 5062 558976150 558980272 0.000000e+00 7614.0
1 TraesCS1A01G392400 chr1A 100.000 487 0 0 1 487 558975211 558975697 0.000000e+00 900.0
2 TraesCS1A01G392400 chr1D 96.121 1779 50 9 2799 4575 467033104 467034865 0.000000e+00 2885.0
3 TraesCS1A01G392400 chr1D 89.847 1369 99 18 1477 2831 467031761 467033103 0.000000e+00 1722.0
4 TraesCS1A01G392400 chr1D 83.996 1131 107 39 997 2101 467030496 467031578 0.000000e+00 1018.0
5 TraesCS1A01G392400 chr1D 85.387 349 20 14 4645 4990 467035476 467035796 2.920000e-87 333.0
6 TraesCS1A01G392400 chr1D 85.377 212 9 7 277 473 467029819 467030023 3.090000e-47 200.0
7 TraesCS1A01G392400 chr1D 96.667 60 1 1 3582 3640 351255383 351255324 1.160000e-16 99.0
8 TraesCS1A01G392400 chr1D 96.429 56 1 1 161 216 467029574 467029628 1.940000e-14 91.6
9 TraesCS1A01G392400 chr1D 89.231 65 1 3 3582 3640 20943146 20943082 5.430000e-10 76.8
10 TraesCS1A01G392400 chr1B 86.421 1517 134 33 1716 3214 643588547 643590009 0.000000e+00 1594.0
11 TraesCS1A01G392400 chr1B 94.851 1010 33 10 3642 4649 643590395 643591387 0.000000e+00 1559.0
12 TraesCS1A01G392400 chr1B 96.928 293 9 0 3288 3580 643590100 643590392 4.550000e-135 492.0
13 TraesCS1A01G392400 chr1B 85.600 375 39 8 1291 1658 643588160 643588526 3.700000e-101 379.0
14 TraesCS1A01G392400 chr1B 80.876 251 12 15 4645 4891 643592089 643592307 1.130000e-36 165.0
15 TraesCS1A01G392400 chr1B 80.000 160 24 5 2179 2337 683692645 683692797 1.490000e-20 111.0
16 TraesCS1A01G392400 chr1B 80.255 157 17 7 2599 2753 683692975 683693119 6.930000e-19 106.0
17 TraesCS1A01G392400 chr3D 90.965 653 49 3 1526 2178 214456833 214457475 0.000000e+00 870.0
18 TraesCS1A01G392400 chr3D 90.382 655 53 3 1526 2180 80682058 80681414 0.000000e+00 852.0
19 TraesCS1A01G392400 chr3D 89.482 656 59 4 1526 2181 568319224 568318579 0.000000e+00 821.0
20 TraesCS1A01G392400 chr3D 89.488 371 23 7 1126 1495 568319578 568319223 5.970000e-124 455.0
21 TraesCS1A01G392400 chr3D 86.806 144 8 4 1352 1495 31553334 31553466 3.160000e-32 150.0
22 TraesCS1A01G392400 chr3D 94.340 53 3 0 3352 3404 376263975 376264027 1.170000e-11 82.4
23 TraesCS1A01G392400 chr2D 90.563 657 50 4 1526 2180 491088758 491088112 0.000000e+00 859.0
24 TraesCS1A01G392400 chr6D 90.076 655 55 4 1526 2180 282327769 282328413 0.000000e+00 841.0
25 TraesCS1A01G392400 chr2B 90.076 655 55 3 1526 2180 61182416 61183060 0.000000e+00 841.0
26 TraesCS1A01G392400 chr5A 89.160 655 61 3 1526 2180 548302437 548303081 0.000000e+00 808.0
27 TraesCS1A01G392400 chr5A 86.022 93 13 0 1284 1376 381304272 381304180 3.220000e-17 100.0
28 TraesCS1A01G392400 chr5A 88.525 61 7 0 5002 5062 682925032 682924972 1.950000e-09 75.0
29 TraesCS1A01G392400 chr5A 97.561 41 1 0 998 1038 381304691 381304651 2.530000e-08 71.3
30 TraesCS1A01G392400 chr5A 100.000 37 0 0 1145 1181 381304560 381304524 9.090000e-08 69.4
31 TraesCS1A01G392400 chr2A 88.855 655 63 4 1526 2180 14860580 14859936 0.000000e+00 797.0
32 TraesCS1A01G392400 chr2A 87.795 254 21 4 1242 1495 14860822 14860579 6.410000e-74 289.0
33 TraesCS1A01G392400 chr2A 89.474 76 3 3 3581 3652 751242377 751242451 1.940000e-14 91.6
34 TraesCS1A01G392400 chr2A 91.525 59 1 2 3585 3640 709863115 709863058 1.510000e-10 78.7
35 TraesCS1A01G392400 chr6B 88.406 207 14 4 1289 1495 35778562 35778366 1.820000e-59 241.0
36 TraesCS1A01G392400 chr5B 81.597 288 35 15 1111 1387 35172880 35173160 6.600000e-54 222.0
37 TraesCS1A01G392400 chr5B 92.562 121 4 3 940 1060 35172771 35172886 8.720000e-38 169.0
38 TraesCS1A01G392400 chr5B 93.846 65 3 1 3581 3644 591828394 591828458 4.170000e-16 97.1
39 TraesCS1A01G392400 chr5B 84.946 93 14 0 1284 1376 327601148 327601056 1.500000e-15 95.3
40 TraesCS1A01G392400 chr5B 100.000 42 0 0 446 487 35172719 35172760 1.510000e-10 78.7
41 TraesCS1A01G392400 chr5B 97.561 41 1 0 998 1038 327601585 327601545 2.530000e-08 71.3
42 TraesCS1A01G392400 chr5B 97.297 37 1 0 1145 1181 327601454 327601418 4.230000e-06 63.9
43 TraesCS1A01G392400 chr5D 86.022 93 13 0 1284 1376 288177180 288177088 3.220000e-17 100.0
44 TraesCS1A01G392400 chr5D 91.935 62 2 2 3582 3640 133864750 133864689 3.250000e-12 84.2
45 TraesCS1A01G392400 chr5D 93.103 58 1 2 3582 3636 494472312 494472255 1.170000e-11 82.4
46 TraesCS1A01G392400 chr5D 97.561 41 1 0 998 1038 288177597 288177557 2.530000e-08 71.3
47 TraesCS1A01G392400 chr5D 97.297 37 1 0 1145 1181 288177468 288177432 4.230000e-06 63.9
48 TraesCS1A01G392400 chr3B 75.862 203 37 11 3352 3547 490886041 490886238 5.400000e-15 93.5
49 TraesCS1A01G392400 chr4D 92.063 63 1 2 3582 3640 73330391 73330329 9.030000e-13 86.1
50 TraesCS1A01G392400 chr3A 75.124 201 40 9 3352 3547 500986980 500987175 9.030000e-13 86.1
51 TraesCS1A01G392400 chr7D 86.567 67 9 0 3579 3645 613910444 613910510 1.950000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G392400 chr1A 558975211 558980272 5061 False 4257.0 7614 100.000000 1 5062 2 chr1A.!!$F1 5061
1 TraesCS1A01G392400 chr1D 467029574 467035796 6222 False 1041.6 2885 89.526167 161 4990 6 chr1D.!!$F1 4829
2 TraesCS1A01G392400 chr1B 643588160 643592307 4147 False 837.8 1594 88.935200 1291 4891 5 chr1B.!!$F1 3600
3 TraesCS1A01G392400 chr3D 214456833 214457475 642 False 870.0 870 90.965000 1526 2178 1 chr3D.!!$F2 652
4 TraesCS1A01G392400 chr3D 80681414 80682058 644 True 852.0 852 90.382000 1526 2180 1 chr3D.!!$R1 654
5 TraesCS1A01G392400 chr3D 568318579 568319578 999 True 638.0 821 89.485000 1126 2181 2 chr3D.!!$R2 1055
6 TraesCS1A01G392400 chr2D 491088112 491088758 646 True 859.0 859 90.563000 1526 2180 1 chr2D.!!$R1 654
7 TraesCS1A01G392400 chr6D 282327769 282328413 644 False 841.0 841 90.076000 1526 2180 1 chr6D.!!$F1 654
8 TraesCS1A01G392400 chr2B 61182416 61183060 644 False 841.0 841 90.076000 1526 2180 1 chr2B.!!$F1 654
9 TraesCS1A01G392400 chr5A 548302437 548303081 644 False 808.0 808 89.160000 1526 2180 1 chr5A.!!$F1 654
10 TraesCS1A01G392400 chr2A 14859936 14860822 886 True 543.0 797 88.325000 1242 2180 2 chr2A.!!$R2 938

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.093705 CTCGCTCGCTTTCCTTTTCG 59.906 55.0 0.0 0.0 0.00 3.46 F
1765 1941 0.169672 GTGTCACCATCATGTGCTGC 59.830 55.0 0.0 0.0 36.17 5.25 F
2122 3103 0.324285 TTGGCCCATGCAAATTGACC 59.676 50.0 0.0 0.0 40.13 4.02 F
3640 4708 0.035458 CATTATGGGACGGAGGGAGC 59.965 60.0 0.0 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2006 2987 0.239879 CAGGCGTAAATGCAAACGGT 59.760 50.000 17.68 0.0 39.46 4.83 R
2679 3669 2.499693 TGCCAAGATCACCGTGATAGAA 59.500 45.455 14.09 0.0 37.20 2.10 R
3946 5014 0.546122 GGCATGTCAGGTGGGTATCA 59.454 55.000 0.00 0.0 0.00 2.15 R
5000 7158 0.106918 ACACCCAAGAGCCAAAACGA 60.107 50.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.043713 TCGACGCAGCAAAGGCAG 61.044 61.111 0.00 0.00 44.61 4.85
18 19 4.093952 CGACGCAGCAAAGGCAGG 62.094 66.667 0.00 0.00 44.61 4.85
19 20 4.410743 GACGCAGCAAAGGCAGGC 62.411 66.667 0.00 0.00 44.61 4.85
21 22 4.415332 CGCAGCAAAGGCAGGCAG 62.415 66.667 0.00 0.00 44.61 4.85
22 23 4.065281 GCAGCAAAGGCAGGCAGG 62.065 66.667 0.00 0.00 44.61 4.85
23 24 4.065281 CAGCAAAGGCAGGCAGGC 62.065 66.667 0.00 0.00 44.61 4.85
34 35 4.684134 GGCAGGCAGGGCAAGGAA 62.684 66.667 0.00 0.00 0.00 3.36
35 36 3.066814 GCAGGCAGGGCAAGGAAG 61.067 66.667 0.00 0.00 0.00 3.46
36 37 2.759114 CAGGCAGGGCAAGGAAGA 59.241 61.111 0.00 0.00 0.00 2.87
37 38 1.075482 CAGGCAGGGCAAGGAAGAA 59.925 57.895 0.00 0.00 0.00 2.52
38 39 0.964358 CAGGCAGGGCAAGGAAGAAG 60.964 60.000 0.00 0.00 0.00 2.85
39 40 1.136329 AGGCAGGGCAAGGAAGAAGA 61.136 55.000 0.00 0.00 0.00 2.87
40 41 0.251341 GGCAGGGCAAGGAAGAAGAA 60.251 55.000 0.00 0.00 0.00 2.52
41 42 1.618074 GGCAGGGCAAGGAAGAAGAAT 60.618 52.381 0.00 0.00 0.00 2.40
42 43 1.475682 GCAGGGCAAGGAAGAAGAATG 59.524 52.381 0.00 0.00 0.00 2.67
43 44 2.097825 CAGGGCAAGGAAGAAGAATGG 58.902 52.381 0.00 0.00 0.00 3.16
44 45 1.995542 AGGGCAAGGAAGAAGAATGGA 59.004 47.619 0.00 0.00 0.00 3.41
45 46 2.379907 AGGGCAAGGAAGAAGAATGGAA 59.620 45.455 0.00 0.00 0.00 3.53
46 47 3.165071 GGGCAAGGAAGAAGAATGGAAA 58.835 45.455 0.00 0.00 0.00 3.13
47 48 3.056536 GGGCAAGGAAGAAGAATGGAAAC 60.057 47.826 0.00 0.00 0.00 2.78
48 49 3.056536 GGCAAGGAAGAAGAATGGAAACC 60.057 47.826 0.00 0.00 0.00 3.27
49 50 3.829026 GCAAGGAAGAAGAATGGAAACCT 59.171 43.478 0.00 0.00 0.00 3.50
50 51 4.281941 GCAAGGAAGAAGAATGGAAACCTT 59.718 41.667 0.00 0.00 37.03 3.50
51 52 5.565637 GCAAGGAAGAAGAATGGAAACCTTC 60.566 44.000 0.00 0.00 34.83 3.46
60 61 2.957060 GGAAACCTTCCCCTTTCGG 58.043 57.895 0.00 0.00 44.30 4.30
61 62 0.111832 GGAAACCTTCCCCTTTCGGT 59.888 55.000 0.00 0.00 44.30 4.69
62 63 1.531423 GAAACCTTCCCCTTTCGGTC 58.469 55.000 0.00 0.00 0.00 4.79
63 64 0.111832 AAACCTTCCCCTTTCGGTCC 59.888 55.000 0.00 0.00 0.00 4.46
64 65 1.063654 AACCTTCCCCTTTCGGTCCA 61.064 55.000 0.00 0.00 0.00 4.02
65 66 1.002502 CCTTCCCCTTTCGGTCCAC 60.003 63.158 0.00 0.00 0.00 4.02
66 67 1.375523 CTTCCCCTTTCGGTCCACG 60.376 63.158 0.00 0.00 46.11 4.94
67 68 2.108278 CTTCCCCTTTCGGTCCACGT 62.108 60.000 0.00 0.00 44.69 4.49
68 69 1.698067 TTCCCCTTTCGGTCCACGTT 61.698 55.000 0.00 0.00 44.69 3.99
69 70 1.228033 CCCCTTTCGGTCCACGTTT 60.228 57.895 0.00 0.00 44.69 3.60
70 71 1.512156 CCCCTTTCGGTCCACGTTTG 61.512 60.000 0.00 0.00 44.69 2.93
71 72 0.816421 CCCTTTCGGTCCACGTTTGT 60.816 55.000 0.00 0.00 44.69 2.83
72 73 1.018910 CCTTTCGGTCCACGTTTGTT 58.981 50.000 0.00 0.00 44.69 2.83
73 74 1.268335 CCTTTCGGTCCACGTTTGTTG 60.268 52.381 0.00 0.00 44.69 3.33
74 75 0.733729 TTTCGGTCCACGTTTGTTGG 59.266 50.000 0.00 0.00 44.69 3.77
75 76 1.716826 TTCGGTCCACGTTTGTTGGC 61.717 55.000 0.00 0.00 44.69 4.52
76 77 2.184167 CGGTCCACGTTTGTTGGCT 61.184 57.895 0.00 0.00 37.93 4.75
77 78 0.881159 CGGTCCACGTTTGTTGGCTA 60.881 55.000 0.00 0.00 37.93 3.93
78 79 0.872388 GGTCCACGTTTGTTGGCTAG 59.128 55.000 0.00 0.00 0.00 3.42
79 80 0.237498 GTCCACGTTTGTTGGCTAGC 59.763 55.000 6.04 6.04 0.00 3.42
80 81 1.206578 CCACGTTTGTTGGCTAGCG 59.793 57.895 9.00 0.00 0.00 4.26
81 82 1.503818 CCACGTTTGTTGGCTAGCGT 61.504 55.000 9.00 0.00 37.69 5.07
82 83 1.141645 CACGTTTGTTGGCTAGCGTA 58.858 50.000 9.00 0.00 35.58 4.42
83 84 1.126113 CACGTTTGTTGGCTAGCGTAG 59.874 52.381 9.00 0.00 35.58 3.51
84 85 0.719465 CGTTTGTTGGCTAGCGTAGG 59.281 55.000 9.00 0.00 0.00 3.18
85 86 1.670674 CGTTTGTTGGCTAGCGTAGGA 60.671 52.381 9.00 0.00 0.00 2.94
86 87 2.000447 GTTTGTTGGCTAGCGTAGGAG 59.000 52.381 9.00 0.00 0.00 3.69
87 88 1.263356 TTGTTGGCTAGCGTAGGAGT 58.737 50.000 9.00 0.00 0.00 3.85
88 89 0.530744 TGTTGGCTAGCGTAGGAGTG 59.469 55.000 9.00 0.00 0.00 3.51
89 90 0.815734 GTTGGCTAGCGTAGGAGTGA 59.184 55.000 9.00 0.00 0.00 3.41
90 91 1.203994 GTTGGCTAGCGTAGGAGTGAA 59.796 52.381 9.00 0.00 0.00 3.18
91 92 1.103803 TGGCTAGCGTAGGAGTGAAG 58.896 55.000 9.00 0.00 0.00 3.02
92 93 0.249114 GGCTAGCGTAGGAGTGAAGC 60.249 60.000 9.00 0.00 0.00 3.86
93 94 0.741915 GCTAGCGTAGGAGTGAAGCT 59.258 55.000 0.00 0.00 41.45 3.74
94 95 1.535015 GCTAGCGTAGGAGTGAAGCTG 60.535 57.143 0.00 0.00 38.73 4.24
95 96 1.066303 CTAGCGTAGGAGTGAAGCTGG 59.934 57.143 0.00 0.00 38.73 4.85
96 97 1.153549 GCGTAGGAGTGAAGCTGGG 60.154 63.158 0.00 0.00 0.00 4.45
97 98 1.605058 GCGTAGGAGTGAAGCTGGGA 61.605 60.000 0.00 0.00 0.00 4.37
98 99 0.457851 CGTAGGAGTGAAGCTGGGAG 59.542 60.000 0.00 0.00 0.00 4.30
99 100 0.827368 GTAGGAGTGAAGCTGGGAGG 59.173 60.000 0.00 0.00 0.00 4.30
100 101 0.710588 TAGGAGTGAAGCTGGGAGGA 59.289 55.000 0.00 0.00 0.00 3.71
101 102 0.178891 AGGAGTGAAGCTGGGAGGAA 60.179 55.000 0.00 0.00 0.00 3.36
102 103 0.915364 GGAGTGAAGCTGGGAGGAAT 59.085 55.000 0.00 0.00 0.00 3.01
103 104 1.134250 GGAGTGAAGCTGGGAGGAATC 60.134 57.143 0.00 0.00 0.00 2.52
104 105 0.915364 AGTGAAGCTGGGAGGAATCC 59.085 55.000 0.00 0.00 0.00 3.01
112 113 4.610714 GGAGGAATCCCGGCGCTC 62.611 72.222 7.64 0.74 37.58 5.03
113 114 4.951963 GAGGAATCCCGGCGCTCG 62.952 72.222 7.64 9.53 37.58 5.03
125 126 2.811317 CGCTCGCTCGCTTTCCTT 60.811 61.111 0.00 0.00 0.00 3.36
126 127 2.383527 CGCTCGCTCGCTTTCCTTT 61.384 57.895 0.00 0.00 0.00 3.11
127 128 1.869690 GCTCGCTCGCTTTCCTTTT 59.130 52.632 0.00 0.00 0.00 2.27
128 129 0.179212 GCTCGCTCGCTTTCCTTTTC 60.179 55.000 0.00 0.00 0.00 2.29
129 130 0.093705 CTCGCTCGCTTTCCTTTTCG 59.906 55.000 0.00 0.00 0.00 3.46
130 131 1.509995 CGCTCGCTTTCCTTTTCGC 60.510 57.895 0.00 0.00 0.00 4.70
131 132 1.154207 GCTCGCTTTCCTTTTCGCC 60.154 57.895 0.00 0.00 0.00 5.54
132 133 1.502190 CTCGCTTTCCTTTTCGCCC 59.498 57.895 0.00 0.00 0.00 6.13
133 134 2.175811 CGCTTTCCTTTTCGCCCG 59.824 61.111 0.00 0.00 0.00 6.13
134 135 2.126463 GCTTTCCTTTTCGCCCGC 60.126 61.111 0.00 0.00 0.00 6.13
135 136 2.566529 CTTTCCTTTTCGCCCGCC 59.433 61.111 0.00 0.00 0.00 6.13
136 137 2.986979 TTTCCTTTTCGCCCGCCC 60.987 61.111 0.00 0.00 0.00 6.13
140 141 3.131478 CTTTTCGCCCGCCCGATT 61.131 61.111 0.00 0.00 37.06 3.34
141 142 3.108357 CTTTTCGCCCGCCCGATTC 62.108 63.158 0.00 0.00 37.06 2.52
147 148 4.951963 CCCGCCCGATTCGCTCTC 62.952 72.222 0.00 0.00 0.00 3.20
150 151 4.577246 GCCCGATTCGCTCTCGCT 62.577 66.667 0.00 0.00 34.84 4.93
151 152 2.656651 CCCGATTCGCTCTCGCTG 60.657 66.667 0.00 0.00 34.84 5.18
152 153 2.656651 CCGATTCGCTCTCGCTGG 60.657 66.667 0.00 0.00 34.84 4.85
153 154 2.656651 CGATTCGCTCTCGCTGGG 60.657 66.667 0.00 0.00 35.26 4.45
154 155 2.964389 GATTCGCTCTCGCTGGGC 60.964 66.667 0.00 0.00 35.26 5.36
155 156 3.723235 GATTCGCTCTCGCTGGGCA 62.723 63.158 1.40 0.00 35.26 5.36
156 157 4.742201 TTCGCTCTCGCTGGGCAC 62.742 66.667 1.40 0.00 35.26 5.01
159 160 4.742201 GCTCTCGCTGGGCACGAA 62.742 66.667 0.00 0.00 39.39 3.85
160 161 2.811317 CTCTCGCTGGGCACGAAC 60.811 66.667 0.00 0.00 39.39 3.95
161 162 4.373116 TCTCGCTGGGCACGAACC 62.373 66.667 0.00 0.00 39.39 3.62
162 163 4.680237 CTCGCTGGGCACGAACCA 62.680 66.667 0.00 0.00 39.39 3.67
214 340 1.163420 AATTCTGTTCCGCACGCACA 61.163 50.000 0.00 0.00 0.00 4.57
215 341 1.568612 ATTCTGTTCCGCACGCACAG 61.569 55.000 12.10 12.10 39.51 3.66
218 344 4.059459 GTTCCGCACGCACAGACG 62.059 66.667 0.00 0.00 39.50 4.18
241 367 2.813908 CCCTGCGTTCGGTAGCAC 60.814 66.667 0.00 0.00 38.59 4.40
243 369 2.094659 CCTGCGTTCGGTAGCACTG 61.095 63.158 0.00 0.00 38.59 3.66
244 370 1.372997 CTGCGTTCGGTAGCACTGT 60.373 57.895 0.00 0.00 38.59 3.55
245 371 1.617755 CTGCGTTCGGTAGCACTGTG 61.618 60.000 2.76 2.76 38.59 3.66
246 372 3.011760 GCGTTCGGTAGCACTGTGC 62.012 63.158 24.59 24.59 45.46 4.57
280 411 5.423015 TCAGATTTCTTTCTCTCCATTCCG 58.577 41.667 0.00 0.00 0.00 4.30
281 412 4.034975 CAGATTTCTTTCTCTCCATTCCGC 59.965 45.833 0.00 0.00 0.00 5.54
285 416 0.740868 TTTCTCTCCATTCCGCGCAG 60.741 55.000 8.75 0.00 0.00 5.18
300 431 1.876156 GCGCAGGGAGAAAATATCAGG 59.124 52.381 0.30 0.00 0.00 3.86
301 432 2.485479 GCGCAGGGAGAAAATATCAGGA 60.485 50.000 0.30 0.00 0.00 3.86
302 433 3.397482 CGCAGGGAGAAAATATCAGGAG 58.603 50.000 0.00 0.00 0.00 3.69
303 434 3.145286 GCAGGGAGAAAATATCAGGAGC 58.855 50.000 0.00 0.00 0.00 4.70
368 512 5.047519 AGTTGCGTTATATATAAGCGGAGGT 60.048 40.000 19.63 11.02 44.60 3.85
370 514 4.219070 TGCGTTATATATAAGCGGAGGTGT 59.781 41.667 19.63 0.00 39.47 4.16
380 524 1.544691 AGCGGAGGTGTACAGTACAAG 59.455 52.381 15.24 6.11 40.93 3.16
437 582 1.673928 CCCTCTCATCCTCCCTCCCT 61.674 65.000 0.00 0.00 0.00 4.20
438 583 0.178935 CCTCTCATCCTCCCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
442 587 3.462501 ATCCTCCCTCCCTCCCCC 61.463 72.222 0.00 0.00 0.00 5.40
449 594 4.541648 CTCCCTCCCCCGACCGAT 62.542 72.222 0.00 0.00 0.00 4.18
473 618 0.882474 ACGACTCCTTTGACCTCTCG 59.118 55.000 0.00 0.00 0.00 4.04
474 619 0.456995 CGACTCCTTTGACCTCTCGC 60.457 60.000 0.00 0.00 0.00 5.03
475 620 0.456995 GACTCCTTTGACCTCTCGCG 60.457 60.000 0.00 0.00 0.00 5.87
476 621 1.807573 CTCCTTTGACCTCTCGCGC 60.808 63.158 0.00 0.00 0.00 6.86
477 622 2.219325 CTCCTTTGACCTCTCGCGCT 62.219 60.000 5.56 0.00 0.00 5.92
478 623 2.097038 CCTTTGACCTCTCGCGCTG 61.097 63.158 5.56 0.00 0.00 5.18
479 624 1.373497 CTTTGACCTCTCGCGCTGT 60.373 57.895 5.56 0.00 0.00 4.40
480 625 1.347817 CTTTGACCTCTCGCGCTGTC 61.348 60.000 5.56 5.71 0.00 3.51
481 626 2.765250 TTTGACCTCTCGCGCTGTCC 62.765 60.000 5.56 0.00 0.00 4.02
482 627 4.500116 GACCTCTCGCGCTGTCCC 62.500 72.222 5.56 0.00 0.00 4.46
484 629 4.200283 CCTCTCGCGCTGTCCCTC 62.200 72.222 5.56 0.00 0.00 4.30
485 630 4.200283 CTCTCGCGCTGTCCCTCC 62.200 72.222 5.56 0.00 0.00 4.30
1097 1242 2.137523 GTCCTCCGTTTCGCTTGTAAA 58.862 47.619 0.00 0.00 0.00 2.01
1098 1243 2.545106 GTCCTCCGTTTCGCTTGTAAAA 59.455 45.455 0.00 0.00 0.00 1.52
1099 1244 3.187842 GTCCTCCGTTTCGCTTGTAAAAT 59.812 43.478 0.00 0.00 0.00 1.82
1100 1245 3.434299 TCCTCCGTTTCGCTTGTAAAATC 59.566 43.478 0.00 0.00 0.00 2.17
1101 1246 3.435671 CCTCCGTTTCGCTTGTAAAATCT 59.564 43.478 0.00 0.00 0.00 2.40
1182 1327 0.737715 CTGCTCAGCGAACCAGGTAC 60.738 60.000 0.00 0.00 0.00 3.34
1187 1332 1.012486 CAGCGAACCAGGTACGTTCC 61.012 60.000 2.44 2.44 37.00 3.62
1189 1334 1.969862 CGAACCAGGTACGTTCCCT 59.030 57.895 7.70 4.04 37.00 4.20
1194 1347 1.982958 ACCAGGTACGTTCCCTTTGAT 59.017 47.619 7.70 0.00 0.00 2.57
1202 1355 5.233689 GGTACGTTCCCTTTGATAGAATTCG 59.766 44.000 0.00 0.00 0.00 3.34
1267 1421 5.514274 TGTTGTTTCTGATTCCTGTTTCC 57.486 39.130 0.00 0.00 0.00 3.13
1390 1544 7.429633 CCCTACGAAGGCAAGATAGATATATG 58.570 42.308 0.00 0.00 42.14 1.78
1454 1615 3.093814 TGAAATAGCGTGTCTCCCAGTA 58.906 45.455 0.00 0.00 0.00 2.74
1455 1616 3.704566 TGAAATAGCGTGTCTCCCAGTAT 59.295 43.478 0.00 0.00 0.00 2.12
1456 1617 4.202121 TGAAATAGCGTGTCTCCCAGTATC 60.202 45.833 0.00 0.00 0.00 2.24
1468 1630 2.840038 TCCCAGTATCATCTGTGTGCTT 59.160 45.455 0.00 0.00 34.02 3.91
1505 1671 1.124780 TGGGGGTACACGGATGTATG 58.875 55.000 0.00 0.00 43.21 2.39
1523 1689 1.292541 GGTGTCGGTGTCCTTCCTC 59.707 63.158 0.00 0.00 0.00 3.71
1665 1841 5.999600 CCAGCATAGATGGTAATTGATCACA 59.000 40.000 0.00 0.00 36.64 3.58
1669 1845 7.551974 AGCATAGATGGTAATTGATCACATAGC 59.448 37.037 0.00 2.00 36.64 2.97
1696 1872 0.597118 CTCTAGTGATGCCGCAGCTC 60.597 60.000 10.45 6.37 40.80 4.09
1700 1876 1.153568 GTGATGCCGCAGCTCTACA 60.154 57.895 10.45 0.00 40.80 2.74
1710 1886 2.347731 GCAGCTCTACACCTGTAAACC 58.652 52.381 0.00 0.00 0.00 3.27
1765 1941 0.169672 GTGTCACCATCATGTGCTGC 59.830 55.000 0.00 0.00 36.17 5.25
1770 1946 2.092267 TCACCATCATGTGCTGCCTTAT 60.092 45.455 0.00 0.00 36.17 1.73
1853 2029 8.715088 ACAAGTTTACATATCCGTTGTAAGAAC 58.285 33.333 0.00 0.00 39.84 3.01
1901 2873 3.315470 TGCGCTTTGTTTGTTATACACCA 59.685 39.130 9.73 0.00 0.00 4.17
1902 2874 4.202020 TGCGCTTTGTTTGTTATACACCAA 60.202 37.500 9.73 0.00 0.00 3.67
1951 2929 1.469940 GGTCGTCACATAGGACTGCAG 60.470 57.143 13.48 13.48 41.69 4.41
1957 2935 0.829333 ACATAGGACTGCAGGAGCTG 59.171 55.000 19.93 10.89 44.36 4.24
1974 2952 2.744202 AGCTGTATTGAACCTGCTTTCG 59.256 45.455 0.00 0.00 34.53 3.46
2002 2983 5.878116 TGTACAAGTTATGCCACATAGGAAC 59.122 40.000 0.00 0.00 41.22 3.62
2006 2987 5.372343 AGTTATGCCACATAGGAACATCA 57.628 39.130 0.00 0.00 41.22 3.07
2009 2990 1.299541 GCCACATAGGAACATCACCG 58.700 55.000 0.00 0.00 41.22 4.94
2050 3031 8.306761 TGCTATAAGTGTACTCATGATATGTGG 58.693 37.037 0.00 0.00 0.00 4.17
2063 3044 6.891361 TCATGATATGTGGGACAAGTTTTGAT 59.109 34.615 0.00 0.00 44.16 2.57
2113 3094 5.870978 GTCATATTAATCAATTGGCCCATGC 59.129 40.000 5.42 0.00 0.00 4.06
2122 3103 0.324285 TTGGCCCATGCAAATTGACC 59.676 50.000 0.00 0.00 40.13 4.02
2123 3104 0.835115 TGGCCCATGCAAATTGACCA 60.835 50.000 0.00 0.00 40.13 4.02
2147 3128 9.720667 CCATATATTGGTATCATAAATGTTGCG 57.279 33.333 0.00 0.00 40.99 4.85
2183 3166 4.789012 ATGGCAGAAATAACACCTTGTG 57.211 40.909 0.00 0.00 39.75 3.33
2240 3227 3.071874 ACTGCTTAAGCTTATGGTGCA 57.928 42.857 26.90 17.53 42.66 4.57
2242 3229 2.091541 TGCTTAAGCTTATGGTGCACC 58.908 47.619 29.67 29.67 42.66 5.01
2310 3298 2.814336 GCTTAGCTGTGGCAAAACTAGT 59.186 45.455 0.00 0.00 41.70 2.57
2395 3383 9.869757 GTTAGACATTTTTATTAGGGCAAACAT 57.130 29.630 0.00 0.00 0.00 2.71
2623 3612 2.722094 TGTGCTTGTCTTGGTGAAGTT 58.278 42.857 0.00 0.00 0.00 2.66
2659 3649 4.171005 TCGGTTGTTTCATAGTCGTCATC 58.829 43.478 0.00 0.00 0.00 2.92
2676 3666 4.437440 GTCATCGCGAATCACTATTTTCG 58.563 43.478 15.24 1.00 45.61 3.46
2679 3669 5.462068 TCATCGCGAATCACTATTTTCGAAT 59.538 36.000 15.24 0.00 45.68 3.34
2776 3768 0.606604 TTGCCTGGTCTCCTTCGTAC 59.393 55.000 0.00 0.00 0.00 3.67
2784 3776 2.223994 GGTCTCCTTCGTACTTATGCCC 60.224 54.545 0.00 0.00 0.00 5.36
2785 3777 2.429610 GTCTCCTTCGTACTTATGCCCA 59.570 50.000 0.00 0.00 0.00 5.36
2803 3795 2.237143 CCCATGGCTAACTGAACTGAGA 59.763 50.000 6.09 0.00 0.00 3.27
2805 3797 4.326826 CCATGGCTAACTGAACTGAGAAA 58.673 43.478 0.00 0.00 0.00 2.52
2881 3906 9.292846 CATAATACACAATGAAGTTGGAATGTG 57.707 33.333 0.00 0.00 42.28 3.21
2916 3941 5.698545 GCGAATCTTCCTGCTATGTTTCTAT 59.301 40.000 0.00 0.00 0.00 1.98
2965 3990 2.734346 GTTGCGTGGTGCCATTGC 60.734 61.111 10.27 10.27 45.60 3.56
3120 4145 5.482908 GTTCATCCTCTGTACAGTGTTCAT 58.517 41.667 21.99 8.67 0.00 2.57
3182 4207 8.510132 TGTACATGTGAATCGTAATATAACGG 57.490 34.615 9.11 0.00 43.05 4.44
3266 4294 4.890088 TCTAGTTGTGGTTTGCGAAGTAT 58.110 39.130 0.00 0.00 0.00 2.12
3425 4493 6.018262 TGCAACTGATATTATTAGCGGAACAC 60.018 38.462 0.00 0.00 0.00 3.32
3442 4510 5.115480 GGAACACCATTTTGAAAAAGAGCA 58.885 37.500 0.00 0.00 0.00 4.26
3542 4610 4.521130 TCAGATACGCACTGTTCTTCTT 57.479 40.909 0.00 0.00 36.81 2.52
3603 4671 2.104792 ACTCCATCCGTCCCATAATGTG 59.895 50.000 0.00 0.00 0.00 3.21
3606 4674 2.421388 CCATCCGTCCCATAATGTGTGT 60.421 50.000 0.00 0.00 0.00 3.72
3608 4676 1.903183 TCCGTCCCATAATGTGTGTCA 59.097 47.619 0.00 0.00 0.00 3.58
3609 4677 2.303311 TCCGTCCCATAATGTGTGTCAA 59.697 45.455 0.00 0.00 0.00 3.18
3610 4678 3.078097 CCGTCCCATAATGTGTGTCAAA 58.922 45.455 0.00 0.00 0.00 2.69
3611 4679 3.504134 CCGTCCCATAATGTGTGTCAAAA 59.496 43.478 0.00 0.00 0.00 2.44
3612 4680 4.022762 CCGTCCCATAATGTGTGTCAAAAA 60.023 41.667 0.00 0.00 0.00 1.94
3640 4708 0.035458 CATTATGGGACGGAGGGAGC 59.965 60.000 0.00 0.00 0.00 4.70
3819 4887 0.106015 CCCCAAACCCAGATGATCCC 60.106 60.000 0.00 0.00 0.00 3.85
3890 4958 1.202842 TGAGACAGGTACGTGGAGACA 60.203 52.381 19.03 10.58 38.70 3.41
3946 5014 8.470002 GTTTTATGCTCCACTATCCATTTTCTT 58.530 33.333 0.00 0.00 0.00 2.52
4254 5322 8.737168 TTCATAACTTGCTGCTTATAGAACAT 57.263 30.769 0.00 0.00 0.00 2.71
4376 5444 3.141272 TGTATTTCTCCCCCAAACACCTT 59.859 43.478 0.00 0.00 0.00 3.50
4377 5445 2.375014 TTTCTCCCCCAAACACCTTC 57.625 50.000 0.00 0.00 0.00 3.46
4479 5547 3.535280 TTTTCTCCCTTTTTGGTGTGC 57.465 42.857 0.00 0.00 0.00 4.57
4554 5622 6.267699 TCTCAGTGAGTAAGATTGGTTCTGAA 59.732 38.462 19.53 0.00 33.93 3.02
4556 5624 7.453393 TCAGTGAGTAAGATTGGTTCTGAATT 58.547 34.615 0.00 0.00 33.93 2.17
4576 5644 2.727429 AGGTAAAGTGGGGAGTGGTA 57.273 50.000 0.00 0.00 0.00 3.25
4579 5647 2.172082 GGTAAAGTGGGGAGTGGTATCC 59.828 54.545 0.00 0.00 38.76 2.59
4597 5665 6.376018 TGGTATCCCTGTTATACTTTTTGCAC 59.624 38.462 0.00 0.00 31.71 4.57
4619 5688 7.222805 TGCACGTTCTTATGAAGATTGTAGATC 59.777 37.037 0.00 0.00 37.38 2.75
4644 5713 3.716353 ACCCAGGTAAGACATCATATGCA 59.284 43.478 0.00 0.00 0.00 3.96
4646 5715 5.132502 CCCAGGTAAGACATCATATGCAAA 58.867 41.667 0.00 0.00 0.00 3.68
4647 5716 5.593909 CCCAGGTAAGACATCATATGCAAAA 59.406 40.000 0.00 0.00 0.00 2.44
4648 5717 6.096705 CCCAGGTAAGACATCATATGCAAAAA 59.903 38.462 0.00 0.00 0.00 1.94
4649 5718 7.198390 CCAGGTAAGACATCATATGCAAAAAG 58.802 38.462 0.00 0.00 0.00 2.27
4650 5719 6.694411 CAGGTAAGACATCATATGCAAAAAGC 59.306 38.462 0.00 0.00 45.96 3.51
4683 6837 8.306761 GGACTTCATACCAAAATGTTCAGATTT 58.693 33.333 0.00 0.00 0.00 2.17
4898 7055 3.448301 CACCCTGTTTGATTGGCATATGT 59.552 43.478 4.29 0.00 0.00 2.29
4899 7056 4.644234 CACCCTGTTTGATTGGCATATGTA 59.356 41.667 4.29 0.00 0.00 2.29
4900 7057 5.302568 CACCCTGTTTGATTGGCATATGTAT 59.697 40.000 4.29 0.00 0.00 2.29
4901 7058 6.489700 CACCCTGTTTGATTGGCATATGTATA 59.510 38.462 4.29 0.00 0.00 1.47
4949 7106 9.665719 TTGAATATGTAGTCATTGCTACTGAAA 57.334 29.630 14.86 1.63 41.27 2.69
4954 7111 8.311109 TATGTAGTCATTGCTACTGAAAGTTCA 58.689 33.333 14.86 0.00 40.80 3.18
4990 7148 6.279882 TGCAAGTCTAAGGAAAAACAAATGG 58.720 36.000 0.00 0.00 0.00 3.16
4991 7149 6.097554 TGCAAGTCTAAGGAAAAACAAATGGA 59.902 34.615 0.00 0.00 0.00 3.41
4992 7150 6.642540 GCAAGTCTAAGGAAAAACAAATGGAG 59.357 38.462 0.00 0.00 0.00 3.86
4993 7151 6.901081 AGTCTAAGGAAAAACAAATGGAGG 57.099 37.500 0.00 0.00 0.00 4.30
4994 7152 5.775195 AGTCTAAGGAAAAACAAATGGAGGG 59.225 40.000 0.00 0.00 0.00 4.30
4995 7153 5.047306 GTCTAAGGAAAAACAAATGGAGGGG 60.047 44.000 0.00 0.00 0.00 4.79
4996 7154 3.628832 AGGAAAAACAAATGGAGGGGA 57.371 42.857 0.00 0.00 0.00 4.81
4997 7155 3.510459 AGGAAAAACAAATGGAGGGGAG 58.490 45.455 0.00 0.00 0.00 4.30
4998 7156 2.567169 GGAAAAACAAATGGAGGGGAGG 59.433 50.000 0.00 0.00 0.00 4.30
4999 7157 2.325661 AAAACAAATGGAGGGGAGGG 57.674 50.000 0.00 0.00 0.00 4.30
5000 7158 1.167033 AAACAAATGGAGGGGAGGGT 58.833 50.000 0.00 0.00 0.00 4.34
5001 7159 0.704664 AACAAATGGAGGGGAGGGTC 59.295 55.000 0.00 0.00 0.00 4.46
5002 7160 1.224592 CAAATGGAGGGGAGGGTCG 59.775 63.158 0.00 0.00 0.00 4.79
5003 7161 1.229853 AAATGGAGGGGAGGGTCGT 60.230 57.895 0.00 0.00 0.00 4.34
5004 7162 0.845102 AAATGGAGGGGAGGGTCGTT 60.845 55.000 0.00 0.00 0.00 3.85
5005 7163 0.845102 AATGGAGGGGAGGGTCGTTT 60.845 55.000 0.00 0.00 0.00 3.60
5006 7164 0.845102 ATGGAGGGGAGGGTCGTTTT 60.845 55.000 0.00 0.00 0.00 2.43
5007 7165 1.002502 GGAGGGGAGGGTCGTTTTG 60.003 63.158 0.00 0.00 0.00 2.44
5008 7166 1.002502 GAGGGGAGGGTCGTTTTGG 60.003 63.158 0.00 0.00 0.00 3.28
5009 7167 2.675423 GGGGAGGGTCGTTTTGGC 60.675 66.667 0.00 0.00 0.00 4.52
5010 7168 2.434774 GGGAGGGTCGTTTTGGCT 59.565 61.111 0.00 0.00 0.00 4.75
5011 7169 1.674651 GGGAGGGTCGTTTTGGCTC 60.675 63.158 0.00 0.00 0.00 4.70
5012 7170 1.375326 GGAGGGTCGTTTTGGCTCT 59.625 57.895 0.00 0.00 0.00 4.09
5013 7171 0.250770 GGAGGGTCGTTTTGGCTCTT 60.251 55.000 0.00 0.00 0.00 2.85
5014 7172 0.875059 GAGGGTCGTTTTGGCTCTTG 59.125 55.000 0.00 0.00 0.00 3.02
5015 7173 0.537371 AGGGTCGTTTTGGCTCTTGG 60.537 55.000 0.00 0.00 0.00 3.61
5016 7174 1.524008 GGGTCGTTTTGGCTCTTGGG 61.524 60.000 0.00 0.00 0.00 4.12
5017 7175 0.822121 GGTCGTTTTGGCTCTTGGGT 60.822 55.000 0.00 0.00 0.00 4.51
5018 7176 0.310854 GTCGTTTTGGCTCTTGGGTG 59.689 55.000 0.00 0.00 0.00 4.61
5019 7177 0.106918 TCGTTTTGGCTCTTGGGTGT 60.107 50.000 0.00 0.00 0.00 4.16
5020 7178 1.141254 TCGTTTTGGCTCTTGGGTGTA 59.859 47.619 0.00 0.00 0.00 2.90
5021 7179 2.159382 CGTTTTGGCTCTTGGGTGTAT 58.841 47.619 0.00 0.00 0.00 2.29
5022 7180 3.008157 TCGTTTTGGCTCTTGGGTGTATA 59.992 43.478 0.00 0.00 0.00 1.47
5023 7181 3.126343 CGTTTTGGCTCTTGGGTGTATAC 59.874 47.826 0.00 0.00 0.00 1.47
5024 7182 2.684001 TTGGCTCTTGGGTGTATACG 57.316 50.000 0.00 0.00 0.00 3.06
5025 7183 0.177141 TGGCTCTTGGGTGTATACGC 59.823 55.000 7.95 7.95 39.96 4.42
5026 7184 0.464452 GGCTCTTGGGTGTATACGCT 59.536 55.000 15.69 0.00 40.18 5.07
5027 7185 1.538419 GGCTCTTGGGTGTATACGCTC 60.538 57.143 15.69 12.76 40.18 5.03
5028 7186 1.538419 GCTCTTGGGTGTATACGCTCC 60.538 57.143 13.69 13.79 40.18 4.70
5029 7187 1.068741 CTCTTGGGTGTATACGCTCCC 59.931 57.143 13.69 16.27 41.31 4.30
5030 7188 1.120530 CTTGGGTGTATACGCTCCCT 58.879 55.000 22.41 0.00 41.45 4.20
5031 7189 2.091720 TCTTGGGTGTATACGCTCCCTA 60.092 50.000 22.41 17.10 41.45 3.53
5032 7190 2.457813 TGGGTGTATACGCTCCCTAA 57.542 50.000 22.41 8.46 41.45 2.69
5033 7191 2.966915 TGGGTGTATACGCTCCCTAAT 58.033 47.619 22.41 0.00 41.45 1.73
5034 7192 2.631062 TGGGTGTATACGCTCCCTAATG 59.369 50.000 22.41 0.00 41.45 1.90
5035 7193 2.895404 GGGTGTATACGCTCCCTAATGA 59.105 50.000 15.69 0.00 38.71 2.57
5036 7194 3.322828 GGGTGTATACGCTCCCTAATGAA 59.677 47.826 15.69 0.00 38.71 2.57
5037 7195 4.304939 GGTGTATACGCTCCCTAATGAAC 58.695 47.826 15.69 0.00 0.00 3.18
5038 7196 4.202182 GGTGTATACGCTCCCTAATGAACA 60.202 45.833 15.69 0.00 0.00 3.18
5039 7197 4.982916 GTGTATACGCTCCCTAATGAACAG 59.017 45.833 9.22 0.00 0.00 3.16
5040 7198 4.647853 TGTATACGCTCCCTAATGAACAGT 59.352 41.667 0.00 0.00 0.00 3.55
5041 7199 5.829391 TGTATACGCTCCCTAATGAACAGTA 59.171 40.000 0.00 0.00 0.00 2.74
5042 7200 5.864418 ATACGCTCCCTAATGAACAGTAA 57.136 39.130 0.00 0.00 0.00 2.24
5043 7201 4.546829 ACGCTCCCTAATGAACAGTAAA 57.453 40.909 0.00 0.00 0.00 2.01
5044 7202 5.099042 ACGCTCCCTAATGAACAGTAAAT 57.901 39.130 0.00 0.00 0.00 1.40
5045 7203 5.497474 ACGCTCCCTAATGAACAGTAAATT 58.503 37.500 0.00 0.00 0.00 1.82
5046 7204 5.585047 ACGCTCCCTAATGAACAGTAAATTC 59.415 40.000 0.00 0.00 0.00 2.17
5047 7205 5.584649 CGCTCCCTAATGAACAGTAAATTCA 59.415 40.000 0.00 0.00 40.25 2.57
5048 7206 6.093495 CGCTCCCTAATGAACAGTAAATTCAA 59.907 38.462 0.00 0.00 39.43 2.69
5049 7207 7.361713 CGCTCCCTAATGAACAGTAAATTCAAA 60.362 37.037 0.00 0.00 39.43 2.69
5050 7208 8.470002 GCTCCCTAATGAACAGTAAATTCAAAT 58.530 33.333 0.00 0.00 39.43 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.043713 CTGCCTTTGCTGCGTCGA 61.044 61.111 0.00 0.00 38.71 4.20
2 3 4.410743 GCCTGCCTTTGCTGCGTC 62.411 66.667 0.00 0.00 38.71 5.19
4 5 4.415332 CTGCCTGCCTTTGCTGCG 62.415 66.667 0.00 0.00 38.34 5.18
5 6 4.065281 CCTGCCTGCCTTTGCTGC 62.065 66.667 0.00 0.00 38.71 5.25
6 7 4.065281 GCCTGCCTGCCTTTGCTG 62.065 66.667 0.00 0.00 38.71 4.41
7 8 4.608774 TGCCTGCCTGCCTTTGCT 62.609 61.111 0.00 0.00 38.71 3.91
8 9 4.065281 CTGCCTGCCTGCCTTTGC 62.065 66.667 0.00 0.00 38.26 3.68
9 10 3.379445 CCTGCCTGCCTGCCTTTG 61.379 66.667 0.00 0.00 0.00 2.77
10 11 4.691359 CCCTGCCTGCCTGCCTTT 62.691 66.667 0.00 0.00 0.00 3.11
17 18 4.684134 TTCCTTGCCCTGCCTGCC 62.684 66.667 0.00 0.00 0.00 4.85
18 19 3.066814 CTTCCTTGCCCTGCCTGC 61.067 66.667 0.00 0.00 0.00 4.85
19 20 0.964358 CTTCTTCCTTGCCCTGCCTG 60.964 60.000 0.00 0.00 0.00 4.85
20 21 1.136329 TCTTCTTCCTTGCCCTGCCT 61.136 55.000 0.00 0.00 0.00 4.75
21 22 0.251341 TTCTTCTTCCTTGCCCTGCC 60.251 55.000 0.00 0.00 0.00 4.85
22 23 1.475682 CATTCTTCTTCCTTGCCCTGC 59.524 52.381 0.00 0.00 0.00 4.85
23 24 2.097825 CCATTCTTCTTCCTTGCCCTG 58.902 52.381 0.00 0.00 0.00 4.45
24 25 1.995542 TCCATTCTTCTTCCTTGCCCT 59.004 47.619 0.00 0.00 0.00 5.19
25 26 2.514458 TCCATTCTTCTTCCTTGCCC 57.486 50.000 0.00 0.00 0.00 5.36
26 27 3.056536 GGTTTCCATTCTTCTTCCTTGCC 60.057 47.826 0.00 0.00 0.00 4.52
27 28 3.829026 AGGTTTCCATTCTTCTTCCTTGC 59.171 43.478 0.00 0.00 0.00 4.01
28 29 6.018589 GAAGGTTTCCATTCTTCTTCCTTG 57.981 41.667 0.00 0.00 34.74 3.61
54 55 1.268335 CCAACAAACGTGGACCGAAAG 60.268 52.381 0.00 0.00 38.54 2.62
55 56 0.733729 CCAACAAACGTGGACCGAAA 59.266 50.000 0.00 0.00 38.54 3.46
56 57 1.716826 GCCAACAAACGTGGACCGAA 61.717 55.000 0.00 0.00 38.54 4.30
57 58 2.181521 GCCAACAAACGTGGACCGA 61.182 57.895 0.00 0.00 38.54 4.69
58 59 0.881159 TAGCCAACAAACGTGGACCG 60.881 55.000 0.00 0.00 38.54 4.79
59 60 0.872388 CTAGCCAACAAACGTGGACC 59.128 55.000 0.00 0.00 38.54 4.46
60 61 0.237498 GCTAGCCAACAAACGTGGAC 59.763 55.000 2.29 0.00 38.54 4.02
61 62 1.225376 CGCTAGCCAACAAACGTGGA 61.225 55.000 9.66 0.00 38.54 4.02
62 63 1.206578 CGCTAGCCAACAAACGTGG 59.793 57.895 9.66 0.00 39.33 4.94
63 64 1.126113 CTACGCTAGCCAACAAACGTG 59.874 52.381 9.66 0.00 35.15 4.49
64 65 1.425412 CTACGCTAGCCAACAAACGT 58.575 50.000 9.66 0.75 37.53 3.99
65 66 0.719465 CCTACGCTAGCCAACAAACG 59.281 55.000 9.66 0.00 0.00 3.60
66 67 2.000447 CTCCTACGCTAGCCAACAAAC 59.000 52.381 9.66 0.00 0.00 2.93
67 68 1.621814 ACTCCTACGCTAGCCAACAAA 59.378 47.619 9.66 0.00 0.00 2.83
68 69 1.067142 CACTCCTACGCTAGCCAACAA 60.067 52.381 9.66 0.00 0.00 2.83
69 70 0.530744 CACTCCTACGCTAGCCAACA 59.469 55.000 9.66 0.00 0.00 3.33
70 71 0.815734 TCACTCCTACGCTAGCCAAC 59.184 55.000 9.66 0.00 0.00 3.77
71 72 1.476891 CTTCACTCCTACGCTAGCCAA 59.523 52.381 9.66 0.00 0.00 4.52
72 73 1.103803 CTTCACTCCTACGCTAGCCA 58.896 55.000 9.66 0.00 0.00 4.75
73 74 0.249114 GCTTCACTCCTACGCTAGCC 60.249 60.000 9.66 0.00 0.00 3.93
74 75 0.741915 AGCTTCACTCCTACGCTAGC 59.258 55.000 4.06 4.06 0.00 3.42
75 76 1.066303 CCAGCTTCACTCCTACGCTAG 59.934 57.143 0.00 0.00 0.00 3.42
76 77 1.103803 CCAGCTTCACTCCTACGCTA 58.896 55.000 0.00 0.00 0.00 4.26
77 78 1.608717 CCCAGCTTCACTCCTACGCT 61.609 60.000 0.00 0.00 0.00 5.07
78 79 1.153549 CCCAGCTTCACTCCTACGC 60.154 63.158 0.00 0.00 0.00 4.42
79 80 0.457851 CTCCCAGCTTCACTCCTACG 59.542 60.000 0.00 0.00 0.00 3.51
80 81 0.827368 CCTCCCAGCTTCACTCCTAC 59.173 60.000 0.00 0.00 0.00 3.18
81 82 0.710588 TCCTCCCAGCTTCACTCCTA 59.289 55.000 0.00 0.00 0.00 2.94
82 83 0.178891 TTCCTCCCAGCTTCACTCCT 60.179 55.000 0.00 0.00 0.00 3.69
83 84 0.915364 ATTCCTCCCAGCTTCACTCC 59.085 55.000 0.00 0.00 0.00 3.85
84 85 1.134250 GGATTCCTCCCAGCTTCACTC 60.134 57.143 0.00 0.00 35.28 3.51
85 86 0.915364 GGATTCCTCCCAGCTTCACT 59.085 55.000 0.00 0.00 35.28 3.41
86 87 3.485764 GGATTCCTCCCAGCTTCAC 57.514 57.895 0.00 0.00 35.28 3.18
95 96 4.610714 GAGCGCCGGGATTCCTCC 62.611 72.222 2.29 0.00 41.26 4.30
96 97 4.951963 CGAGCGCCGGGATTCCTC 62.952 72.222 2.29 0.00 33.91 3.71
108 109 1.901650 AAAAGGAAAGCGAGCGAGCG 61.902 55.000 0.00 0.00 43.00 5.03
109 110 0.179212 GAAAAGGAAAGCGAGCGAGC 60.179 55.000 0.00 0.00 37.41 5.03
110 111 0.093705 CGAAAAGGAAAGCGAGCGAG 59.906 55.000 0.00 0.00 0.00 5.03
111 112 1.897398 GCGAAAAGGAAAGCGAGCGA 61.897 55.000 0.00 0.00 0.00 4.93
112 113 1.509995 GCGAAAAGGAAAGCGAGCG 60.510 57.895 0.00 0.00 0.00 5.03
113 114 1.154207 GGCGAAAAGGAAAGCGAGC 60.154 57.895 0.00 0.00 0.00 5.03
114 115 1.502190 GGGCGAAAAGGAAAGCGAG 59.498 57.895 0.00 0.00 0.00 5.03
115 116 2.322081 CGGGCGAAAAGGAAAGCGA 61.322 57.895 0.00 0.00 0.00 4.93
116 117 2.175811 CGGGCGAAAAGGAAAGCG 59.824 61.111 0.00 0.00 0.00 4.68
117 118 2.126463 GCGGGCGAAAAGGAAAGC 60.126 61.111 0.00 0.00 0.00 3.51
118 119 2.566529 GGCGGGCGAAAAGGAAAG 59.433 61.111 0.00 0.00 0.00 2.62
119 120 2.986979 GGGCGGGCGAAAAGGAAA 60.987 61.111 0.00 0.00 0.00 3.13
123 124 3.108357 GAATCGGGCGGGCGAAAAG 62.108 63.158 0.00 0.00 0.00 2.27
124 125 3.128845 GAATCGGGCGGGCGAAAA 61.129 61.111 0.00 0.00 0.00 2.29
130 131 4.951963 GAGAGCGAATCGGGCGGG 62.952 72.222 4.35 0.00 35.00 6.13
143 144 2.811317 GTTCGTGCCCAGCGAGAG 60.811 66.667 0.00 0.00 39.61 3.20
144 145 4.373116 GGTTCGTGCCCAGCGAGA 62.373 66.667 0.00 0.00 39.61 4.04
145 146 4.680237 TGGTTCGTGCCCAGCGAG 62.680 66.667 0.00 0.00 39.61 5.03
146 147 4.680237 CTGGTTCGTGCCCAGCGA 62.680 66.667 5.16 0.00 42.81 4.93
148 149 4.643387 ACCTGGTTCGTGCCCAGC 62.643 66.667 10.86 0.00 46.73 4.85
150 151 1.826054 CAAACCTGGTTCGTGCCCA 60.826 57.895 13.36 0.00 0.00 5.36
151 152 2.561037 CCAAACCTGGTTCGTGCCC 61.561 63.158 13.36 0.00 38.00 5.36
152 153 3.039134 CCAAACCTGGTTCGTGCC 58.961 61.111 13.36 0.00 38.00 5.01
187 188 1.934849 GCGGAACAGAATTGGGTTTGC 60.935 52.381 0.00 0.00 0.00 3.68
258 385 4.034975 GCGGAATGGAGAGAAAGAAATCTG 59.965 45.833 0.00 0.00 0.00 2.90
259 386 4.195416 GCGGAATGGAGAGAAAGAAATCT 58.805 43.478 0.00 0.00 0.00 2.40
260 387 3.001736 CGCGGAATGGAGAGAAAGAAATC 59.998 47.826 0.00 0.00 0.00 2.17
261 388 2.939103 CGCGGAATGGAGAGAAAGAAAT 59.061 45.455 0.00 0.00 0.00 2.17
264 391 0.460284 GCGCGGAATGGAGAGAAAGA 60.460 55.000 8.83 0.00 0.00 2.52
265 392 0.740868 TGCGCGGAATGGAGAGAAAG 60.741 55.000 8.83 0.00 0.00 2.62
269 400 2.587194 CCTGCGCGGAATGGAGAG 60.587 66.667 20.25 0.00 33.16 3.20
271 402 4.161295 TCCCTGCGCGGAATGGAG 62.161 66.667 20.25 0.00 33.16 3.86
274 405 1.305219 TTTTCTCCCTGCGCGGAATG 61.305 55.000 20.25 5.88 33.16 2.67
275 406 0.394352 ATTTTCTCCCTGCGCGGAAT 60.394 50.000 20.25 5.18 33.16 3.01
280 411 1.876156 CCTGATATTTTCTCCCTGCGC 59.124 52.381 0.00 0.00 0.00 6.09
281 412 3.397482 CTCCTGATATTTTCTCCCTGCG 58.603 50.000 0.00 0.00 0.00 5.18
285 416 3.658709 CTCGCTCCTGATATTTTCTCCC 58.341 50.000 0.00 0.00 0.00 4.30
333 464 3.334751 CGCAACTCGTTCGTGCCA 61.335 61.111 0.00 0.00 0.00 4.92
344 488 5.047519 ACCTCCGCTTATATATAACGCAACT 60.048 40.000 18.63 5.07 0.00 3.16
368 512 2.559231 TGGTCGATGCTTGTACTGTACA 59.441 45.455 16.26 16.26 36.79 2.90
370 514 3.699538 AGATGGTCGATGCTTGTACTGTA 59.300 43.478 0.00 0.00 0.00 2.74
380 524 2.663188 GCCGGAGATGGTCGATGC 60.663 66.667 5.05 0.00 0.00 3.91
416 560 0.762461 GGAGGGAGGATGAGAGGGTG 60.762 65.000 0.00 0.00 0.00 4.61
417 561 1.629297 GGAGGGAGGATGAGAGGGT 59.371 63.158 0.00 0.00 0.00 4.34
437 582 1.297364 GTCAAAATCGGTCGGGGGA 59.703 57.895 0.00 0.00 0.00 4.81
438 583 2.104253 CGTCAAAATCGGTCGGGGG 61.104 63.158 0.00 0.00 0.00 5.40
442 587 0.989890 GGAGTCGTCAAAATCGGTCG 59.010 55.000 0.00 0.00 0.00 4.79
449 594 3.134081 AGAGGTCAAAGGAGTCGTCAAAA 59.866 43.478 0.00 0.00 0.00 2.44
981 1126 2.590092 GAATCCACCGACCAGGGG 59.410 66.667 0.00 0.00 46.96 4.79
982 1127 1.635817 ATGGAATCCACCGACCAGGG 61.636 60.000 3.09 0.00 46.96 4.45
984 1129 0.464373 CCATGGAATCCACCGACCAG 60.464 60.000 5.56 0.00 35.80 4.00
985 1130 1.607071 CCATGGAATCCACCGACCA 59.393 57.895 5.56 0.00 35.80 4.02
986 1131 1.823899 GCCATGGAATCCACCGACC 60.824 63.158 18.40 0.00 35.80 4.79
987 1132 1.823899 GGCCATGGAATCCACCGAC 60.824 63.158 18.40 0.00 35.80 4.79
988 1133 1.857638 TTGGCCATGGAATCCACCGA 61.858 55.000 18.40 2.36 35.80 4.69
989 1134 1.379710 TTGGCCATGGAATCCACCG 60.380 57.895 18.40 0.00 35.80 4.94
990 1135 0.614415 TGTTGGCCATGGAATCCACC 60.614 55.000 18.40 6.71 35.80 4.61
991 1136 0.819582 CTGTTGGCCATGGAATCCAC 59.180 55.000 18.40 8.87 35.80 4.02
992 1137 0.971959 GCTGTTGGCCATGGAATCCA 60.972 55.000 18.40 11.08 34.37 3.41
993 1138 0.971959 TGCTGTTGGCCATGGAATCC 60.972 55.000 18.40 8.07 40.92 3.01
994 1139 0.896923 TTGCTGTTGGCCATGGAATC 59.103 50.000 18.40 4.47 40.92 2.52
995 1140 0.609662 GTTGCTGTTGGCCATGGAAT 59.390 50.000 18.40 0.00 40.92 3.01
1064 1209 1.758514 GAGGACAGATCTGGCGGGA 60.759 63.158 26.08 0.00 40.25 5.14
1182 1327 3.560068 CCCGAATTCTATCAAAGGGAACG 59.440 47.826 3.52 0.00 39.71 3.95
1187 1332 4.150897 TCCACCCGAATTCTATCAAAGG 57.849 45.455 3.52 0.00 0.00 3.11
1189 1334 5.295787 CGAAATCCACCCGAATTCTATCAAA 59.704 40.000 3.52 0.00 29.44 2.69
1194 1347 2.743838 GCCGAAATCCACCCGAATTCTA 60.744 50.000 3.52 0.00 29.44 2.10
1202 1355 0.748367 GGAGAAGCCGAAATCCACCC 60.748 60.000 0.00 0.00 0.00 4.61
1235 1388 4.015872 TCAGAAACAACATCCTACACCC 57.984 45.455 0.00 0.00 0.00 4.61
1239 1392 5.940470 ACAGGAATCAGAAACAACATCCTAC 59.060 40.000 0.00 0.00 34.18 3.18
1448 1609 2.996249 AGCACACAGATGATACTGGG 57.004 50.000 0.00 0.00 45.62 4.45
1454 1615 5.366460 CAGGATAGAAAGCACACAGATGAT 58.634 41.667 0.00 0.00 0.00 2.45
1455 1616 4.763073 CAGGATAGAAAGCACACAGATGA 58.237 43.478 0.00 0.00 0.00 2.92
1456 1617 3.311871 GCAGGATAGAAAGCACACAGATG 59.688 47.826 0.00 0.00 0.00 2.90
1468 1630 3.245016 CCCCATAGCATTGCAGGATAGAA 60.245 47.826 11.91 0.00 0.00 2.10
1505 1671 1.292541 GAGGAAGGACACCGACACC 59.707 63.158 0.00 0.00 0.00 4.16
1567 1733 5.321102 AGGCCACAAACAGATACAACATAA 58.679 37.500 5.01 0.00 0.00 1.90
1568 1734 4.917385 AGGCCACAAACAGATACAACATA 58.083 39.130 5.01 0.00 0.00 2.29
1569 1735 3.766545 AGGCCACAAACAGATACAACAT 58.233 40.909 5.01 0.00 0.00 2.71
1570 1736 3.222173 AGGCCACAAACAGATACAACA 57.778 42.857 5.01 0.00 0.00 3.33
1571 1737 4.278419 AGAAAGGCCACAAACAGATACAAC 59.722 41.667 5.01 0.00 0.00 3.32
1572 1738 4.469657 AGAAAGGCCACAAACAGATACAA 58.530 39.130 5.01 0.00 0.00 2.41
1641 1807 5.999600 TGTGATCAATTACCATCTATGCTGG 59.000 40.000 0.00 0.00 39.80 4.85
1696 1872 6.590292 CAGACAACATAGGTTTACAGGTGTAG 59.410 42.308 0.00 0.00 34.21 2.74
1700 1876 5.307196 ACTCAGACAACATAGGTTTACAGGT 59.693 40.000 0.00 0.00 34.21 4.00
1710 1886 7.711846 AGCTATTCAGTACTCAGACAACATAG 58.288 38.462 0.00 0.00 0.00 2.23
1765 1941 8.443953 TGAACCAAAACAAAATGGAAATAAGG 57.556 30.769 0.00 0.00 39.12 2.69
1770 1946 6.541641 CAGGATGAACCAAAACAAAATGGAAA 59.458 34.615 0.00 0.00 39.69 3.13
1902 2874 8.314143 CAGAATGGACATGTAAAGCAATTTTT 57.686 30.769 0.00 0.00 0.00 1.94
1951 2929 2.409948 AGCAGGTTCAATACAGCTCC 57.590 50.000 0.00 0.00 35.53 4.70
1957 2935 4.213482 ACAAGTCGAAAGCAGGTTCAATAC 59.787 41.667 0.00 0.00 0.00 1.89
1974 2952 8.061237 TCCTATGTGGCATAACTTGTACAAGTC 61.061 40.741 34.98 23.96 42.29 3.01
2002 2983 1.910819 GCGTAAATGCAAACGGTGATG 59.089 47.619 17.68 0.00 39.46 3.07
2006 2987 0.239879 CAGGCGTAAATGCAAACGGT 59.760 50.000 17.68 0.00 39.46 4.83
2009 2990 2.911819 TAGCAGGCGTAAATGCAAAC 57.088 45.000 0.00 0.00 45.01 2.93
2050 3031 6.218746 AGCATGAAAGAATCAAAACTTGTCC 58.781 36.000 0.00 0.00 42.54 4.02
2063 3044 9.269453 CATTGTCATAGATCTAGCATGAAAGAA 57.731 33.333 8.70 3.49 30.85 2.52
2105 3086 0.542805 ATGGTCAATTTGCATGGGCC 59.457 50.000 0.00 0.00 40.13 5.80
2183 3166 6.049790 GGTACTCTCCATCCAACAATAGAAC 58.950 44.000 0.00 0.00 0.00 3.01
2240 3227 7.849322 AAAGTGTCACCATTAAAATTAGGGT 57.151 32.000 0.00 0.00 0.00 4.34
2310 3298 7.054124 AGTGAACTAAGGACATGTTTTCAAGA 58.946 34.615 0.00 0.00 0.00 3.02
2385 3373 6.686484 ATAAGGAAAAGAAATGTTTGCCCT 57.314 33.333 0.00 0.00 35.85 5.19
2623 3612 7.708051 TGAAACAACCGAAATTTACATCAAGA 58.292 30.769 0.00 0.00 0.00 3.02
2659 3649 5.728255 AGAATTCGAAAATAGTGATTCGCG 58.272 37.500 0.00 0.00 45.91 5.87
2676 3666 4.212214 GCCAAGATCACCGTGATAGAATTC 59.788 45.833 14.09 0.00 37.20 2.17
2679 3669 2.499693 TGCCAAGATCACCGTGATAGAA 59.500 45.455 14.09 0.00 37.20 2.10
2784 3776 5.947228 TTTTCTCAGTTCAGTTAGCCATG 57.053 39.130 0.00 0.00 0.00 3.66
2785 3777 6.491403 ACAATTTTCTCAGTTCAGTTAGCCAT 59.509 34.615 0.00 0.00 0.00 4.40
2881 3906 4.447054 CAGGAAGATTCGCATAGTGATGTC 59.553 45.833 0.00 0.00 35.30 3.06
2965 3990 9.823098 CAAAGAATAGAACATCTCAAGAACAAG 57.177 33.333 0.00 0.00 0.00 3.16
3120 4145 6.952773 AACACTGCCAAATAAGTAAAGTGA 57.047 33.333 6.89 0.00 37.56 3.41
3182 4207 3.878778 ACTGGCATTCTGAGATGTTACC 58.121 45.455 0.00 0.00 0.00 2.85
3266 4294 7.338800 AGAAAAGATTGCAGAAAAGAGACAA 57.661 32.000 0.00 0.00 0.00 3.18
3425 4493 7.900782 AATGAGATGCTCTTTTTCAAAATGG 57.099 32.000 0.00 0.00 0.00 3.16
3442 4510 7.013083 GCAGTTTACATCCATCAGAAATGAGAT 59.987 37.037 0.00 0.00 0.00 2.75
3542 4610 2.565834 GGAAGTCAGCAGTGGTTACCTA 59.434 50.000 2.07 0.00 0.00 3.08
3609 4677 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
3610 4678 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
3611 4679 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
3612 4680 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
3613 4681 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
3614 4682 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
3615 4683 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
3616 4684 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
3617 4685 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
3618 4686 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
3619 4687 2.605257 CTCCCTCCGTCCCATAATGTA 58.395 52.381 0.00 0.00 0.00 2.29
3640 4708 7.433708 TGATATGTCAACTACCACAAAACTG 57.566 36.000 0.00 0.00 0.00 3.16
3819 4887 1.497991 TTGCGACGTTTTCTGAGAGG 58.502 50.000 0.00 0.00 0.00 3.69
3946 5014 0.546122 GGCATGTCAGGTGGGTATCA 59.454 55.000 0.00 0.00 0.00 2.15
4178 5246 3.245229 ACCACCAACTAGAAATGATGCCA 60.245 43.478 0.00 0.00 0.00 4.92
4254 5322 3.667497 AGATGAACGAGAAACAGAGCA 57.333 42.857 0.00 0.00 0.00 4.26
4306 5374 6.249192 TGGAGAGATTACATACTCGGATCAT 58.751 40.000 0.00 0.00 38.08 2.45
4323 5391 6.556495 AGAGCCACTATTATCATTTGGAGAGA 59.444 38.462 0.00 0.00 0.00 3.10
4376 5444 6.398234 TCCAAAAGAAAACCAAATCATCGA 57.602 33.333 0.00 0.00 0.00 3.59
4377 5445 7.656707 AATCCAAAAGAAAACCAAATCATCG 57.343 32.000 0.00 0.00 0.00 3.84
4463 5531 1.691196 TCAGCACACCAAAAAGGGAG 58.309 50.000 0.00 0.00 43.89 4.30
4464 5532 1.754226 GTTCAGCACACCAAAAAGGGA 59.246 47.619 0.00 0.00 43.89 4.20
4477 5545 4.831107 TCATAAGTATGTGCAGTTCAGCA 58.169 39.130 0.00 0.00 35.90 4.41
4479 5547 7.912250 GGAAAATCATAAGTATGTGCAGTTCAG 59.088 37.037 0.00 0.00 35.26 3.02
4533 5601 8.043710 CCTAATTCAGAACCAATCTTACTCACT 58.956 37.037 0.00 0.00 35.73 3.41
4534 5602 7.824779 ACCTAATTCAGAACCAATCTTACTCAC 59.175 37.037 0.00 0.00 35.73 3.51
4554 5622 3.538387 ACCACTCCCCACTTTACCTAAT 58.462 45.455 0.00 0.00 0.00 1.73
4556 5624 2.727429 ACCACTCCCCACTTTACCTA 57.273 50.000 0.00 0.00 0.00 3.08
4576 5644 5.007682 ACGTGCAAAAAGTATAACAGGGAT 58.992 37.500 0.00 0.00 0.00 3.85
4579 5647 5.997385 AGAACGTGCAAAAAGTATAACAGG 58.003 37.500 0.00 0.00 0.00 4.00
4597 5665 9.907576 GTTTGATCTACAATCTTCATAAGAACG 57.092 33.333 0.00 0.00 41.63 3.95
4619 5688 5.009010 GCATATGATGTCTTACCTGGGTTTG 59.991 44.000 6.97 0.00 0.00 2.93
4644 5713 6.723977 TGGTATGAAGTCCAAATAGGCTTTTT 59.276 34.615 0.00 0.00 35.01 1.94
4646 5715 5.826643 TGGTATGAAGTCCAAATAGGCTTT 58.173 37.500 0.00 0.00 35.01 3.51
4647 5716 5.450818 TGGTATGAAGTCCAAATAGGCTT 57.549 39.130 0.00 0.00 36.75 4.35
4648 5717 5.450818 TTGGTATGAAGTCCAAATAGGCT 57.549 39.130 0.00 0.00 40.21 4.58
4833 6990 8.881743 CCCGTATAGTGAACATACTATAGAGAC 58.118 40.741 6.78 0.00 43.25 3.36
4846 7003 0.532196 GGCTGGCCCGTATAGTGAAC 60.532 60.000 0.00 0.00 0.00 3.18
4949 7106 2.309613 TGCATCCTTGTTTGCTGAACT 58.690 42.857 5.39 0.00 39.60 3.01
4954 7111 2.590821 AGACTTGCATCCTTGTTTGCT 58.409 42.857 0.00 0.00 39.60 3.91
4990 7148 1.002502 CCAAAACGACCCTCCCCTC 60.003 63.158 0.00 0.00 0.00 4.30
4991 7149 3.167414 CCAAAACGACCCTCCCCT 58.833 61.111 0.00 0.00 0.00 4.79
4992 7150 2.675423 GCCAAAACGACCCTCCCC 60.675 66.667 0.00 0.00 0.00 4.81
4993 7151 1.674651 GAGCCAAAACGACCCTCCC 60.675 63.158 0.00 0.00 0.00 4.30
4994 7152 0.250770 AAGAGCCAAAACGACCCTCC 60.251 55.000 0.00 0.00 0.00 4.30
4995 7153 0.875059 CAAGAGCCAAAACGACCCTC 59.125 55.000 0.00 0.00 0.00 4.30
4996 7154 0.537371 CCAAGAGCCAAAACGACCCT 60.537 55.000 0.00 0.00 0.00 4.34
4997 7155 1.524008 CCCAAGAGCCAAAACGACCC 61.524 60.000 0.00 0.00 0.00 4.46
4998 7156 0.822121 ACCCAAGAGCCAAAACGACC 60.822 55.000 0.00 0.00 0.00 4.79
4999 7157 0.310854 CACCCAAGAGCCAAAACGAC 59.689 55.000 0.00 0.00 0.00 4.34
5000 7158 0.106918 ACACCCAAGAGCCAAAACGA 60.107 50.000 0.00 0.00 0.00 3.85
5001 7159 1.600023 TACACCCAAGAGCCAAAACG 58.400 50.000 0.00 0.00 0.00 3.60
5002 7160 3.126343 CGTATACACCCAAGAGCCAAAAC 59.874 47.826 3.32 0.00 0.00 2.43
5003 7161 3.340034 CGTATACACCCAAGAGCCAAAA 58.660 45.455 3.32 0.00 0.00 2.44
5004 7162 2.937873 GCGTATACACCCAAGAGCCAAA 60.938 50.000 3.32 0.00 0.00 3.28
5005 7163 1.406341 GCGTATACACCCAAGAGCCAA 60.406 52.381 3.32 0.00 0.00 4.52
5006 7164 0.177141 GCGTATACACCCAAGAGCCA 59.823 55.000 3.32 0.00 0.00 4.75
5007 7165 0.464452 AGCGTATACACCCAAGAGCC 59.536 55.000 3.32 0.00 0.00 4.70
5008 7166 1.538419 GGAGCGTATACACCCAAGAGC 60.538 57.143 3.32 0.00 0.00 4.09
5009 7167 1.068741 GGGAGCGTATACACCCAAGAG 59.931 57.143 18.83 0.00 41.72 2.85
5010 7168 1.117150 GGGAGCGTATACACCCAAGA 58.883 55.000 18.83 0.00 41.72 3.02
5011 7169 1.120530 AGGGAGCGTATACACCCAAG 58.879 55.000 23.00 1.78 44.25 3.61
5012 7170 2.457813 TAGGGAGCGTATACACCCAA 57.542 50.000 23.00 4.76 44.25 4.12
5013 7171 2.457813 TTAGGGAGCGTATACACCCA 57.542 50.000 23.00 11.99 44.25 4.51
5014 7172 2.895404 TCATTAGGGAGCGTATACACCC 59.105 50.000 17.05 17.05 42.36 4.61
5015 7173 4.202182 TGTTCATTAGGGAGCGTATACACC 60.202 45.833 3.32 3.22 0.00 4.16
5016 7174 4.940463 TGTTCATTAGGGAGCGTATACAC 58.060 43.478 3.32 0.00 0.00 2.90
5017 7175 4.647853 ACTGTTCATTAGGGAGCGTATACA 59.352 41.667 3.32 0.00 0.00 2.29
5018 7176 5.197682 ACTGTTCATTAGGGAGCGTATAC 57.802 43.478 0.00 0.00 0.00 1.47
5019 7177 6.964807 TTACTGTTCATTAGGGAGCGTATA 57.035 37.500 0.00 0.00 0.00 1.47
5020 7178 5.864418 TTACTGTTCATTAGGGAGCGTAT 57.136 39.130 0.00 0.00 0.00 3.06
5021 7179 5.664294 TTTACTGTTCATTAGGGAGCGTA 57.336 39.130 0.00 0.00 0.00 4.42
5022 7180 4.546829 TTTACTGTTCATTAGGGAGCGT 57.453 40.909 0.00 0.00 0.00 5.07
5023 7181 5.584649 TGAATTTACTGTTCATTAGGGAGCG 59.415 40.000 0.00 0.00 31.07 5.03
5024 7182 7.391148 TTGAATTTACTGTTCATTAGGGAGC 57.609 36.000 0.00 0.00 35.68 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.