Multiple sequence alignment - TraesCS1A01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G391800 chr1A 100.000 3746 0 0 1 3746 558542668 558538923 0.000000e+00 6918.0
1 TraesCS1A01G391800 chr1B 88.172 1674 181 11 1078 2749 643119715 643118057 0.000000e+00 1978.0
2 TraesCS1A01G391800 chr1B 94.111 832 49 0 2755 3586 643115625 643114794 0.000000e+00 1266.0
3 TraesCS1A01G391800 chr1B 89.022 501 47 5 175 669 643120782 643120284 6.880000e-172 614.0
4 TraesCS1A01G391800 chr1B 84.175 297 33 4 776 1072 643120102 643119820 3.690000e-70 276.0
5 TraesCS1A01G391800 chr1B 93.671 79 5 0 3668 3746 643114792 643114714 6.570000e-23 119.0
6 TraesCS1A01G391800 chr1B 96.552 58 2 0 722 779 264854836 264854779 3.080000e-16 97.1
7 TraesCS1A01G391800 chr1B 95.161 62 2 1 719 779 626712894 626712833 3.080000e-16 97.1
8 TraesCS1A01G391800 chr1D 87.609 1493 179 6 1244 2733 466388108 466386619 0.000000e+00 1727.0
9 TraesCS1A01G391800 chr1D 92.880 632 43 2 3116 3746 466386615 466385985 0.000000e+00 917.0
10 TraesCS1A01G391800 chr1D 93.274 223 14 1 502 723 466388739 466388517 1.000000e-85 327.0
11 TraesCS1A01G391800 chr3B 80.761 447 84 2 3293 3738 22438249 22438694 7.700000e-92 348.0
12 TraesCS1A01G391800 chr6B 77.151 372 74 6 1431 1801 705642317 705641956 4.900000e-49 206.0
13 TraesCS1A01G391800 chr6B 85.955 178 23 2 1393 1569 11742952 11743128 4.940000e-44 189.0
14 TraesCS1A01G391800 chr5A 95.082 61 3 0 719 779 375215419 375215479 3.080000e-16 97.1
15 TraesCS1A01G391800 chr4D 95.000 60 3 0 720 779 124628768 124628827 1.110000e-15 95.3
16 TraesCS1A01G391800 chr3D 95.000 60 3 0 720 779 121985626 121985567 1.110000e-15 95.3
17 TraesCS1A01G391800 chrUn 93.443 61 4 0 719 779 378270655 378270595 1.430000e-14 91.6
18 TraesCS1A01G391800 chrUn 93.443 61 4 0 719 779 447954259 447954319 1.430000e-14 91.6
19 TraesCS1A01G391800 chr6D 94.828 58 3 0 722 779 387886074 387886017 1.430000e-14 91.6
20 TraesCS1A01G391800 chr2B 91.176 68 5 1 712 779 740737937 740737871 1.430000e-14 91.6
21 TraesCS1A01G391800 chr2D 90.909 44 4 0 2193 2236 577796365 577796408 4.040000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G391800 chr1A 558538923 558542668 3745 True 6918.000000 6918 100.000000 1 3746 1 chr1A.!!$R1 3745
1 TraesCS1A01G391800 chr1B 643114714 643120782 6068 True 850.600000 1978 89.830200 175 3746 5 chr1B.!!$R3 3571
2 TraesCS1A01G391800 chr1D 466385985 466388739 2754 True 990.333333 1727 91.254333 502 3746 3 chr1D.!!$R1 3244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 588 0.026674 TCGTATACTGAACGACGCGG 59.973 55.0 12.47 0.0 43.90 6.46 F
2018 2248 0.103026 GGGCAATTTCCGAATCTGGC 59.897 55.0 7.60 7.6 32.91 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2559 2789 0.093705 CGCTGAGCTTGTTTCTACGC 59.906 55.0 1.78 0.0 0.00 4.42 R
3370 6026 1.230324 GTTCTTCTTGGCGTCTTGCT 58.770 50.0 0.00 0.0 45.43 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.650647 AGTTCATCACCGCCATTGT 57.349 47.368 0.00 0.00 0.00 2.71
19 20 1.909700 AGTTCATCACCGCCATTGTT 58.090 45.000 0.00 0.00 0.00 2.83
20 21 3.066291 AGTTCATCACCGCCATTGTTA 57.934 42.857 0.00 0.00 0.00 2.41
21 22 2.747446 AGTTCATCACCGCCATTGTTAC 59.253 45.455 0.00 0.00 0.00 2.50
22 23 2.747446 GTTCATCACCGCCATTGTTACT 59.253 45.455 0.00 0.00 0.00 2.24
23 24 2.355197 TCATCACCGCCATTGTTACTG 58.645 47.619 0.00 0.00 0.00 2.74
24 25 2.083774 CATCACCGCCATTGTTACTGT 58.916 47.619 0.00 0.00 0.00 3.55
25 26 2.264005 TCACCGCCATTGTTACTGTT 57.736 45.000 0.00 0.00 0.00 3.16
26 27 3.404224 TCACCGCCATTGTTACTGTTA 57.596 42.857 0.00 0.00 0.00 2.41
27 28 3.741249 TCACCGCCATTGTTACTGTTAA 58.259 40.909 0.00 0.00 0.00 2.01
28 29 4.135306 TCACCGCCATTGTTACTGTTAAA 58.865 39.130 0.00 0.00 0.00 1.52
29 30 4.023878 TCACCGCCATTGTTACTGTTAAAC 60.024 41.667 0.00 0.00 0.00 2.01
30 31 3.884091 ACCGCCATTGTTACTGTTAAACA 59.116 39.130 0.00 0.00 35.12 2.83
31 32 4.223659 CCGCCATTGTTACTGTTAAACAC 58.776 43.478 0.00 0.00 36.61 3.32
32 33 4.023536 CCGCCATTGTTACTGTTAAACACT 60.024 41.667 0.00 0.00 36.61 3.55
33 34 5.506649 CCGCCATTGTTACTGTTAAACACTT 60.507 40.000 0.00 0.00 36.61 3.16
34 35 5.398122 CGCCATTGTTACTGTTAAACACTTG 59.602 40.000 0.00 0.00 36.61 3.16
35 36 6.500041 GCCATTGTTACTGTTAAACACTTGA 58.500 36.000 0.00 0.00 36.61 3.02
36 37 6.636850 GCCATTGTTACTGTTAAACACTTGAG 59.363 38.462 0.00 0.00 36.61 3.02
37 38 6.636850 CCATTGTTACTGTTAAACACTTGAGC 59.363 38.462 0.00 0.00 36.61 4.26
38 39 5.744666 TGTTACTGTTAAACACTTGAGCC 57.255 39.130 0.00 0.00 32.07 4.70
39 40 4.577283 TGTTACTGTTAAACACTTGAGCCC 59.423 41.667 0.00 0.00 32.07 5.19
40 41 3.290948 ACTGTTAAACACTTGAGCCCA 57.709 42.857 0.00 0.00 0.00 5.36
41 42 3.832527 ACTGTTAAACACTTGAGCCCAT 58.167 40.909 0.00 0.00 0.00 4.00
42 43 4.980573 ACTGTTAAACACTTGAGCCCATA 58.019 39.130 0.00 0.00 0.00 2.74
43 44 5.003804 ACTGTTAAACACTTGAGCCCATAG 58.996 41.667 0.00 0.00 0.00 2.23
44 45 4.980573 TGTTAAACACTTGAGCCCATAGT 58.019 39.130 0.00 0.00 0.00 2.12
45 46 6.116711 TGTTAAACACTTGAGCCCATAGTA 57.883 37.500 0.00 0.00 0.00 1.82
46 47 6.717289 TGTTAAACACTTGAGCCCATAGTAT 58.283 36.000 0.00 0.00 0.00 2.12
47 48 7.853299 TGTTAAACACTTGAGCCCATAGTATA 58.147 34.615 0.00 0.00 0.00 1.47
48 49 8.491134 TGTTAAACACTTGAGCCCATAGTATAT 58.509 33.333 0.00 0.00 0.00 0.86
49 50 8.989980 GTTAAACACTTGAGCCCATAGTATATC 58.010 37.037 0.00 0.00 0.00 1.63
50 51 5.746990 ACACTTGAGCCCATAGTATATCC 57.253 43.478 0.00 0.00 0.00 2.59
51 52 4.532521 ACACTTGAGCCCATAGTATATCCC 59.467 45.833 0.00 0.00 0.00 3.85
52 53 4.532126 CACTTGAGCCCATAGTATATCCCA 59.468 45.833 0.00 0.00 0.00 4.37
53 54 5.013079 CACTTGAGCCCATAGTATATCCCAA 59.987 44.000 0.00 0.00 0.00 4.12
54 55 5.610982 ACTTGAGCCCATAGTATATCCCAAA 59.389 40.000 0.00 0.00 0.00 3.28
55 56 6.275618 ACTTGAGCCCATAGTATATCCCAAAT 59.724 38.462 0.00 0.00 0.00 2.32
56 57 6.065976 TGAGCCCATAGTATATCCCAAATG 57.934 41.667 0.00 0.00 0.00 2.32
57 58 4.860022 AGCCCATAGTATATCCCAAATGC 58.140 43.478 0.00 0.00 0.00 3.56
58 59 4.292041 AGCCCATAGTATATCCCAAATGCA 59.708 41.667 0.00 0.00 0.00 3.96
59 60 5.016173 GCCCATAGTATATCCCAAATGCAA 58.984 41.667 0.00 0.00 0.00 4.08
60 61 5.480073 GCCCATAGTATATCCCAAATGCAAA 59.520 40.000 0.00 0.00 0.00 3.68
61 62 6.350445 GCCCATAGTATATCCCAAATGCAAAG 60.350 42.308 0.00 0.00 0.00 2.77
62 63 6.721208 CCCATAGTATATCCCAAATGCAAAGT 59.279 38.462 0.00 0.00 0.00 2.66
63 64 7.233348 CCCATAGTATATCCCAAATGCAAAGTT 59.767 37.037 0.00 0.00 0.00 2.66
64 65 8.084073 CCATAGTATATCCCAAATGCAAAGTTG 58.916 37.037 0.00 0.00 0.00 3.16
65 66 8.849168 CATAGTATATCCCAAATGCAAAGTTGA 58.151 33.333 9.12 0.00 0.00 3.18
66 67 7.100458 AGTATATCCCAAATGCAAAGTTGAC 57.900 36.000 9.12 0.50 0.00 3.18
67 68 2.791383 TCCCAAATGCAAAGTTGACG 57.209 45.000 9.12 0.00 0.00 4.35
68 69 2.028130 TCCCAAATGCAAAGTTGACGT 58.972 42.857 9.12 0.00 0.00 4.34
69 70 3.215151 TCCCAAATGCAAAGTTGACGTA 58.785 40.909 9.12 0.00 0.00 3.57
70 71 3.632604 TCCCAAATGCAAAGTTGACGTAA 59.367 39.130 9.12 0.00 0.00 3.18
71 72 3.733727 CCCAAATGCAAAGTTGACGTAAC 59.266 43.478 9.12 0.00 39.65 2.50
72 73 4.355437 CCAAATGCAAAGTTGACGTAACA 58.645 39.130 9.12 0.00 41.88 2.41
73 74 4.440758 CCAAATGCAAAGTTGACGTAACAG 59.559 41.667 9.12 0.00 41.88 3.16
74 75 3.896648 ATGCAAAGTTGACGTAACAGG 57.103 42.857 0.00 0.00 41.88 4.00
75 76 1.332375 TGCAAAGTTGACGTAACAGGC 59.668 47.619 0.00 0.59 41.88 4.85
76 77 1.334689 GCAAAGTTGACGTAACAGGCC 60.335 52.381 0.00 0.00 41.88 5.19
77 78 2.218603 CAAAGTTGACGTAACAGGCCT 58.781 47.619 0.00 0.00 41.88 5.19
78 79 2.616842 CAAAGTTGACGTAACAGGCCTT 59.383 45.455 0.00 0.00 41.88 4.35
79 80 3.756933 AAGTTGACGTAACAGGCCTTA 57.243 42.857 0.00 0.00 41.88 2.69
80 81 3.756933 AGTTGACGTAACAGGCCTTAA 57.243 42.857 0.00 0.00 41.88 1.85
81 82 4.281898 AGTTGACGTAACAGGCCTTAAT 57.718 40.909 0.00 0.00 41.88 1.40
82 83 4.251268 AGTTGACGTAACAGGCCTTAATC 58.749 43.478 0.00 0.00 41.88 1.75
83 84 3.255969 TGACGTAACAGGCCTTAATCC 57.744 47.619 0.00 0.00 0.00 3.01
84 85 2.093341 TGACGTAACAGGCCTTAATCCC 60.093 50.000 0.00 0.00 0.00 3.85
85 86 2.169978 GACGTAACAGGCCTTAATCCCT 59.830 50.000 0.00 0.00 0.00 4.20
86 87 2.169978 ACGTAACAGGCCTTAATCCCTC 59.830 50.000 0.00 0.00 0.00 4.30
87 88 2.434702 CGTAACAGGCCTTAATCCCTCT 59.565 50.000 0.00 0.00 0.00 3.69
88 89 3.492829 CGTAACAGGCCTTAATCCCTCTC 60.493 52.174 0.00 0.00 0.00 3.20
89 90 1.123928 ACAGGCCTTAATCCCTCTCG 58.876 55.000 0.00 0.00 0.00 4.04
90 91 1.343075 ACAGGCCTTAATCCCTCTCGA 60.343 52.381 0.00 0.00 0.00 4.04
91 92 1.342819 CAGGCCTTAATCCCTCTCGAG 59.657 57.143 0.00 5.93 0.00 4.04
92 93 1.218196 AGGCCTTAATCCCTCTCGAGA 59.782 52.381 15.70 15.70 0.00 4.04
93 94 1.341852 GGCCTTAATCCCTCTCGAGAC 59.658 57.143 12.08 0.00 0.00 3.36
94 95 2.032620 GCCTTAATCCCTCTCGAGACA 58.967 52.381 12.08 0.00 0.00 3.41
95 96 2.630580 GCCTTAATCCCTCTCGAGACAT 59.369 50.000 12.08 0.79 0.00 3.06
96 97 3.827302 GCCTTAATCCCTCTCGAGACATA 59.173 47.826 12.08 0.00 0.00 2.29
97 98 4.281182 GCCTTAATCCCTCTCGAGACATAA 59.719 45.833 12.08 5.87 0.00 1.90
98 99 5.221461 GCCTTAATCCCTCTCGAGACATAAA 60.221 44.000 12.08 0.90 0.00 1.40
99 100 6.685620 GCCTTAATCCCTCTCGAGACATAAAA 60.686 42.308 12.08 1.44 0.00 1.52
100 101 6.926272 CCTTAATCCCTCTCGAGACATAAAAG 59.074 42.308 12.08 10.63 0.00 2.27
101 102 3.802948 TCCCTCTCGAGACATAAAAGC 57.197 47.619 12.08 0.00 0.00 3.51
102 103 3.096852 TCCCTCTCGAGACATAAAAGCA 58.903 45.455 12.08 0.00 0.00 3.91
103 104 3.119101 TCCCTCTCGAGACATAAAAGCAC 60.119 47.826 12.08 0.00 0.00 4.40
104 105 3.368427 CCCTCTCGAGACATAAAAGCACA 60.368 47.826 12.08 0.00 0.00 4.57
105 106 3.862267 CCTCTCGAGACATAAAAGCACAG 59.138 47.826 12.08 0.00 0.00 3.66
106 107 3.849911 TCTCGAGACATAAAAGCACAGG 58.150 45.455 12.08 0.00 0.00 4.00
107 108 2.932614 CTCGAGACATAAAAGCACAGGG 59.067 50.000 6.58 0.00 0.00 4.45
108 109 1.398390 CGAGACATAAAAGCACAGGGC 59.602 52.381 0.00 0.00 45.30 5.19
118 119 3.524014 CACAGGGCAAGTGCAACA 58.476 55.556 5.52 0.00 44.36 3.33
119 120 1.815196 CACAGGGCAAGTGCAACAA 59.185 52.632 5.52 0.00 44.36 2.83
120 121 0.175302 CACAGGGCAAGTGCAACAAA 59.825 50.000 5.52 0.00 44.36 2.83
121 122 1.122227 ACAGGGCAAGTGCAACAAAT 58.878 45.000 5.52 0.00 44.36 2.32
122 123 2.035704 CACAGGGCAAGTGCAACAAATA 59.964 45.455 5.52 0.00 44.36 1.40
123 124 2.899256 ACAGGGCAAGTGCAACAAATAT 59.101 40.909 5.52 0.00 44.36 1.28
124 125 4.082300 CACAGGGCAAGTGCAACAAATATA 60.082 41.667 5.52 0.00 44.36 0.86
125 126 4.082245 ACAGGGCAAGTGCAACAAATATAC 60.082 41.667 5.52 0.00 44.36 1.47
126 127 3.447229 AGGGCAAGTGCAACAAATATACC 59.553 43.478 5.52 0.00 44.36 2.73
127 128 3.447229 GGGCAAGTGCAACAAATATACCT 59.553 43.478 5.52 0.00 44.36 3.08
128 129 4.423732 GGCAAGTGCAACAAATATACCTG 58.576 43.478 5.52 0.00 44.36 4.00
129 130 4.423732 GCAAGTGCAACAAATATACCTGG 58.576 43.478 0.00 0.00 41.43 4.45
130 131 4.157656 GCAAGTGCAACAAATATACCTGGA 59.842 41.667 0.00 0.00 41.43 3.86
131 132 5.336372 GCAAGTGCAACAAATATACCTGGAA 60.336 40.000 0.00 0.00 41.43 3.53
132 133 6.627953 GCAAGTGCAACAAATATACCTGGAAT 60.628 38.462 0.00 0.00 41.43 3.01
133 134 7.322664 CAAGTGCAACAAATATACCTGGAATT 58.677 34.615 0.00 0.00 41.43 2.17
134 135 8.465999 CAAGTGCAACAAATATACCTGGAATTA 58.534 33.333 0.00 0.00 41.43 1.40
135 136 8.225603 AGTGCAACAAATATACCTGGAATTAG 57.774 34.615 0.00 0.00 41.43 1.73
136 137 8.052748 AGTGCAACAAATATACCTGGAATTAGA 58.947 33.333 0.00 0.00 41.43 2.10
137 138 8.682710 GTGCAACAAATATACCTGGAATTAGAA 58.317 33.333 0.00 0.00 36.32 2.10
138 139 8.682710 TGCAACAAATATACCTGGAATTAGAAC 58.317 33.333 0.00 0.00 0.00 3.01
139 140 8.903820 GCAACAAATATACCTGGAATTAGAACT 58.096 33.333 0.00 0.00 0.00 3.01
141 142 8.980481 ACAAATATACCTGGAATTAGAACTGG 57.020 34.615 0.00 0.00 0.00 4.00
142 143 8.778059 ACAAATATACCTGGAATTAGAACTGGA 58.222 33.333 0.00 0.00 0.00 3.86
143 144 9.627123 CAAATATACCTGGAATTAGAACTGGAA 57.373 33.333 0.00 0.00 0.00 3.53
150 151 8.778059 ACCTGGAATTAGAACTGGAAATATACA 58.222 33.333 0.00 0.00 0.00 2.29
151 152 9.799106 CCTGGAATTAGAACTGGAAATATACAT 57.201 33.333 0.00 0.00 0.00 2.29
172 173 7.741027 ACATCATGTATTAAGAGGCTTCATG 57.259 36.000 0.00 0.00 34.46 3.07
173 174 7.285566 ACATCATGTATTAAGAGGCTTCATGT 58.714 34.615 0.00 0.00 34.67 3.21
203 204 2.238521 GTGGAAACATGGGAGCTTTGA 58.761 47.619 0.00 0.00 46.14 2.69
207 208 2.664402 AACATGGGAGCTTTGAGTGT 57.336 45.000 0.00 0.00 0.00 3.55
208 209 2.664402 ACATGGGAGCTTTGAGTGTT 57.336 45.000 0.00 0.00 0.00 3.32
214 215 1.000938 GGAGCTTTGAGTGTTTGCTGG 60.001 52.381 0.00 0.00 33.83 4.85
215 216 1.949525 GAGCTTTGAGTGTTTGCTGGA 59.050 47.619 0.00 0.00 33.83 3.86
218 219 2.358898 GCTTTGAGTGTTTGCTGGAGAA 59.641 45.455 0.00 0.00 0.00 2.87
220 221 1.967319 TGAGTGTTTGCTGGAGAACC 58.033 50.000 0.00 0.00 0.00 3.62
226 227 1.197036 GTTTGCTGGAGAACCGCTTAC 59.803 52.381 0.00 0.00 39.42 2.34
235 236 3.363673 GGAGAACCGCTTACGAAAAACAG 60.364 47.826 0.00 0.00 43.93 3.16
247 248 7.806014 GCTTACGAAAAACAGAATATTTGGTCA 59.194 33.333 0.00 0.00 0.00 4.02
248 249 9.329913 CTTACGAAAAACAGAATATTTGGTCAG 57.670 33.333 0.00 0.00 0.00 3.51
257 258 5.757320 CAGAATATTTGGTCAGAGCAGTAGG 59.243 44.000 1.86 0.00 0.00 3.18
275 276 2.113807 AGGCATGACTCTAGTGCATCA 58.886 47.619 0.00 0.00 40.53 3.07
277 278 3.136077 AGGCATGACTCTAGTGCATCATT 59.864 43.478 0.00 0.00 40.53 2.57
326 327 2.649312 ACTCAACCATGGGAAATGAGGA 59.351 45.455 27.94 11.46 41.34 3.71
348 349 0.744414 ACTCAATTGTCCGGGCATCG 60.744 55.000 10.94 0.65 38.88 3.84
351 352 1.066071 TCAATTGTCCGGGCATCGTTA 60.066 47.619 10.94 0.00 37.11 3.18
357 358 2.218603 GTCCGGGCATCGTTATTGAAT 58.781 47.619 0.00 0.00 37.11 2.57
366 367 6.534793 GGGCATCGTTATTGAATTTGTGATTT 59.465 34.615 0.00 0.00 0.00 2.17
367 368 7.393327 GGCATCGTTATTGAATTTGTGATTTG 58.607 34.615 0.00 0.00 0.00 2.32
384 389 3.510388 TTTGACAGCTCCTACGATCTG 57.490 47.619 0.00 0.00 38.07 2.90
396 401 1.078918 CGATCTGCAGTCAGGCCAA 60.079 57.895 14.67 0.00 40.69 4.52
411 416 1.130561 GGCCAATCGTTGTAGCTGAAC 59.869 52.381 0.00 0.00 0.00 3.18
412 417 1.201921 GCCAATCGTTGTAGCTGAACG 60.202 52.381 20.84 20.84 45.98 3.95
434 440 3.757745 AAGCACATTGCCGTTACATAC 57.242 42.857 0.00 0.00 46.52 2.39
436 442 3.078097 AGCACATTGCCGTTACATACAA 58.922 40.909 0.00 0.00 46.52 2.41
445 451 4.702612 TGCCGTTACATACAAAATGATGGT 59.297 37.500 0.00 0.00 0.00 3.55
453 459 5.481473 ACATACAAAATGATGGTTCCAAGCT 59.519 36.000 0.00 0.00 0.00 3.74
469 475 8.914011 GGTTCCAAGCTAATTAATTTATGAGGT 58.086 33.333 5.91 0.35 0.00 3.85
479 485 6.740944 TTAATTTATGAGGTCTCCATCCGA 57.259 37.500 0.00 0.00 0.00 4.55
499 505 5.475909 TCCGAACAACACTAGAACTCATACT 59.524 40.000 0.00 0.00 0.00 2.12
500 506 5.573282 CCGAACAACACTAGAACTCATACTG 59.427 44.000 0.00 0.00 0.00 2.74
567 574 1.136305 CCGTTCCATGTCAGGTCGTAT 59.864 52.381 0.00 0.00 0.00 3.06
573 580 4.274978 TCCATGTCAGGTCGTATACTGAA 58.725 43.478 0.56 0.00 44.53 3.02
581 588 0.026674 TCGTATACTGAACGACGCGG 59.973 55.000 12.47 0.00 43.90 6.46
674 681 0.900182 ACGATCCTGTCCAGCTCACA 60.900 55.000 0.00 0.00 0.00 3.58
730 738 4.263435 CTGGAACGGTAACTACTCTCTCT 58.737 47.826 0.00 0.00 0.00 3.10
731 739 4.008330 TGGAACGGTAACTACTCTCTCTG 58.992 47.826 0.00 0.00 0.00 3.35
733 741 4.094739 GGAACGGTAACTACTCTCTCTGTC 59.905 50.000 0.00 0.00 0.00 3.51
735 743 2.944349 CGGTAACTACTCTCTCTGTCCC 59.056 54.545 0.00 0.00 0.00 4.46
736 744 3.621709 CGGTAACTACTCTCTCTGTCCCA 60.622 52.174 0.00 0.00 0.00 4.37
737 745 4.538738 GGTAACTACTCTCTCTGTCCCAT 58.461 47.826 0.00 0.00 0.00 4.00
746 754 9.967451 CTACTCTCTCTGTCCCATAATATAAGA 57.033 37.037 0.00 0.00 0.00 2.10
747 755 8.877864 ACTCTCTCTGTCCCATAATATAAGAG 57.122 38.462 0.00 0.00 33.36 2.85
748 756 7.396055 ACTCTCTCTGTCCCATAATATAAGAGC 59.604 40.741 0.00 0.00 31.76 4.09
749 757 6.375736 TCTCTCTGTCCCATAATATAAGAGCG 59.624 42.308 0.00 0.00 31.76 5.03
751 759 6.493802 TCTCTGTCCCATAATATAAGAGCGTT 59.506 38.462 0.00 0.00 31.76 4.84
753 761 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
754 762 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
756 764 9.616156 TGTCCCATAATATAAGAGCGTTTTTAA 57.384 29.630 0.00 0.00 0.00 1.52
757 765 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
758 766 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
759 767 9.659830 CCCATAATATAAGAGCGTTTTTAACAC 57.340 33.333 0.00 0.00 0.00 3.32
764 772 4.385244 AAGAGCGTTTTTAACACTAGCG 57.615 40.909 0.00 0.00 0.00 4.26
765 773 3.387397 AGAGCGTTTTTAACACTAGCGT 58.613 40.909 0.00 0.00 0.00 5.07
767 775 4.620184 AGAGCGTTTTTAACACTAGCGTAG 59.380 41.667 0.00 0.00 0.00 3.51
808 914 1.502231 CTGACAAGGTTGACGGACTG 58.498 55.000 0.00 0.00 32.21 3.51
811 917 1.002087 GACAAGGTTGACGGACTGGAT 59.998 52.381 0.00 0.00 0.00 3.41
830 936 3.501349 GATACAGGTCCTCAGCTCCATA 58.499 50.000 0.00 0.00 0.00 2.74
831 937 1.786937 ACAGGTCCTCAGCTCCATAG 58.213 55.000 0.00 0.00 0.00 2.23
844 950 2.158900 GCTCCATAGCCAGTCAAGCTTA 60.159 50.000 0.00 0.00 43.40 3.09
852 958 5.683876 AGCCAGTCAAGCTTAAGATAAGA 57.316 39.130 6.67 0.00 37.24 2.10
854 960 5.046304 AGCCAGTCAAGCTTAAGATAAGACA 60.046 40.000 21.15 0.00 37.24 3.41
860 966 7.124901 AGTCAAGCTTAAGATAAGACATGAGGA 59.875 37.037 21.15 0.00 0.00 3.71
865 971 8.713036 AGCTTAAGATAAGACATGAGGATTTCT 58.287 33.333 6.67 0.00 0.00 2.52
872 978 4.099633 AGACATGAGGATTTCTGACCAGA 58.900 43.478 0.00 0.00 35.27 3.86
889 995 1.207593 GATGCAAGTGTGTGGACGC 59.792 57.895 0.00 0.00 0.00 5.19
985 1091 1.398390 CGCTTTATTCCCAGCTCACAC 59.602 52.381 0.00 0.00 33.52 3.82
995 1101 0.887836 CAGCTCACACACCACAGCAT 60.888 55.000 0.00 0.00 34.08 3.79
1015 1125 1.938625 AACCATGCAACAGCAACAAC 58.061 45.000 0.00 0.00 42.37 3.32
1043 1153 3.554692 GTTCTGTGCGATCCGGCG 61.555 66.667 0.00 0.00 35.06 6.46
1044 1154 4.063967 TTCTGTGCGATCCGGCGT 62.064 61.111 6.01 0.00 35.06 5.68
1072 1184 2.041405 CCCCACTCCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
1073 1185 2.041405 CCCACTCCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
1075 1187 1.297409 CCCACTCCCTCCTCCTCCTA 61.297 65.000 0.00 0.00 0.00 2.94
1087 1298 2.482142 CCTCCTCCTAATTGCTGTCGAC 60.482 54.545 9.11 9.11 0.00 4.20
1101 1312 3.803555 CTGTCGACTTTGTCTCAATTGC 58.196 45.455 17.92 0.00 0.00 3.56
1213 1443 3.070018 CTGTCCACATGAGTTCTCAACC 58.930 50.000 0.00 0.00 0.00 3.77
1215 1445 3.136443 TGTCCACATGAGTTCTCAACCTT 59.864 43.478 0.00 0.00 0.00 3.50
1276 1506 1.416401 GAGAAGGGTCACACAGTCCAA 59.584 52.381 0.00 0.00 0.00 3.53
1302 1532 4.407621 CCATAGGTGAACATACTACCCACA 59.592 45.833 0.00 0.00 35.03 4.17
1381 1611 0.461548 GAGACGCACCATGATCCTGA 59.538 55.000 0.00 0.00 0.00 3.86
1390 1620 1.004044 CCATGATCCTGATACTGGCCC 59.996 57.143 0.00 0.00 0.00 5.80
1396 1626 1.147824 CTGATACTGGCCCTGCTGG 59.852 63.158 0.00 1.89 37.09 4.85
1471 1701 1.536922 CGGACATGCTCTCGTTGCTAT 60.537 52.381 0.00 0.00 0.00 2.97
1508 1738 0.110486 ACCAACGATCCAAGGCAAGT 59.890 50.000 0.00 0.00 0.00 3.16
1536 1766 4.776322 TGGAACGCCAGCATCCCG 62.776 66.667 8.51 0.00 39.92 5.14
1554 1784 2.353610 GCATTGCAAGTGGGAGGGG 61.354 63.158 4.94 0.00 0.00 4.79
1572 1802 1.227943 GGTCAACTGCAGCCTCACA 60.228 57.895 15.27 0.00 0.00 3.58
1585 1815 3.157949 TCACACACCCAGGTCGCA 61.158 61.111 0.00 0.00 0.00 5.10
1590 1820 2.815211 CACCCAGGTCGCATCACG 60.815 66.667 0.00 0.00 45.62 4.35
1592 1822 3.770040 CCCAGGTCGCATCACGGA 61.770 66.667 0.00 0.00 43.89 4.69
1596 1826 2.887568 GGTCGCATCACGGAGCTG 60.888 66.667 0.00 0.00 43.89 4.24
1602 1832 0.674895 GCATCACGGAGCTGAACCTT 60.675 55.000 0.00 0.00 0.00 3.50
1603 1833 1.081892 CATCACGGAGCTGAACCTTG 58.918 55.000 0.00 0.00 0.00 3.61
1624 1854 0.951040 CGAGCAAGGGTTGTCAGGTC 60.951 60.000 0.00 0.00 0.00 3.85
1674 1904 2.897969 GTTCCTTGAGACACTGGACCTA 59.102 50.000 0.00 0.00 0.00 3.08
1692 1922 5.396884 GGACCTATCCACAAATAGCTTCACT 60.397 44.000 0.00 0.00 45.47 3.41
1699 1929 2.289694 ACAAATAGCTTCACTGGCGAGT 60.290 45.455 0.00 0.00 34.52 4.18
1707 1937 0.541063 TCACTGGCGAGTTACCTCCA 60.541 55.000 0.00 0.00 33.93 3.86
1711 1941 0.541063 TGGCGAGTTACCTCCACTCA 60.541 55.000 1.29 0.00 40.78 3.41
1712 1942 0.606604 GGCGAGTTACCTCCACTCAA 59.393 55.000 1.29 0.00 40.78 3.02
1713 1943 1.672145 GGCGAGTTACCTCCACTCAAC 60.672 57.143 1.29 0.00 40.78 3.18
1714 1944 1.000506 GCGAGTTACCTCCACTCAACA 59.999 52.381 1.29 0.00 40.78 3.33
1722 1952 1.905215 CCTCCACTCAACAGTCTCCAT 59.095 52.381 0.00 0.00 0.00 3.41
1739 1969 6.317789 TCTCCATAGACTGCAAAAACTTTG 57.682 37.500 0.00 0.00 0.00 2.77
1747 1977 2.861935 CTGCAAAAACTTTGGCTGAGTG 59.138 45.455 3.34 0.00 38.03 3.51
1776 2006 0.396139 TGCAAGGGATCATTCCAGCC 60.396 55.000 0.00 0.00 44.60 4.85
1789 2019 5.565509 TCATTCCAGCCACACTTACAAATA 58.434 37.500 0.00 0.00 0.00 1.40
1832 2062 9.707957 CTTATATCTATCTGGTAACTCCCTGAT 57.292 37.037 0.00 0.00 43.28 2.90
1842 2072 5.130477 TGGTAACTCCCTGATAGGTGAAATC 59.870 44.000 0.00 0.00 32.16 2.17
1845 2075 2.373502 CTCCCTGATAGGTGAAATCCCC 59.626 54.545 0.00 0.00 31.93 4.81
1848 2078 2.785857 CCTGATAGGTGAAATCCCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
1863 2093 3.987501 TCCCCCTTAATATAGGCTTGCTT 59.012 43.478 0.00 0.00 33.73 3.91
1869 2099 6.323739 CCCTTAATATAGGCTTGCTTTCCAAA 59.676 38.462 0.00 0.00 33.73 3.28
1875 2105 8.710749 ATATAGGCTTGCTTTCCAAATTATCA 57.289 30.769 0.00 0.00 31.94 2.15
1876 2106 5.334724 AGGCTTGCTTTCCAAATTATCAG 57.665 39.130 0.00 0.00 31.94 2.90
1877 2107 5.018809 AGGCTTGCTTTCCAAATTATCAGA 58.981 37.500 0.00 0.00 31.94 3.27
1878 2108 5.481473 AGGCTTGCTTTCCAAATTATCAGAA 59.519 36.000 0.00 0.00 31.94 3.02
1885 2115 9.241919 TGCTTTCCAAATTATCAGAATTACAGA 57.758 29.630 0.00 0.00 0.00 3.41
1900 2130 9.173939 CAGAATTACAGATTGCCGAAAATAATC 57.826 33.333 0.00 0.00 0.00 1.75
1990 2220 4.037222 TCAACTCATGGGTAGCATTCCTA 58.963 43.478 0.00 0.00 0.00 2.94
2001 2231 5.104735 GGGTAGCATTCCTAATGAGATAGGG 60.105 48.000 3.86 0.00 42.37 3.53
2010 2240 4.697352 CCTAATGAGATAGGGCAATTTCCG 59.303 45.833 0.00 0.00 39.07 4.30
2012 2242 3.924114 TGAGATAGGGCAATTTCCGAA 57.076 42.857 0.00 0.00 0.00 4.30
2017 2247 1.767759 AGGGCAATTTCCGAATCTGG 58.232 50.000 0.00 0.00 0.00 3.86
2018 2248 0.103026 GGGCAATTTCCGAATCTGGC 59.897 55.000 7.60 7.60 32.91 4.85
2019 2249 0.817013 GGCAATTTCCGAATCTGGCA 59.183 50.000 10.13 0.00 33.39 4.92
2021 2251 1.474077 GCAATTTCCGAATCTGGCAGT 59.526 47.619 15.27 0.00 0.00 4.40
2025 2255 5.708948 CAATTTCCGAATCTGGCAGTTTTA 58.291 37.500 15.27 0.00 0.00 1.52
2039 2269 6.249951 TGGCAGTTTTATTACTTGGTGGTAT 58.750 36.000 0.00 0.00 0.00 2.73
2042 2272 8.186163 GGCAGTTTTATTACTTGGTGGTATTAC 58.814 37.037 0.00 0.00 0.00 1.89
2043 2273 8.186163 GCAGTTTTATTACTTGGTGGTATTACC 58.814 37.037 5.87 5.87 41.24 2.85
2055 2285 5.102956 TGGTGGTATTACCCTATCAGGTAGT 60.103 44.000 10.37 0.00 43.24 2.73
2068 2298 3.798515 TCAGGTAGTATCCCAACAACCT 58.201 45.455 0.00 0.00 37.84 3.50
2076 2306 5.580022 AGTATCCCAACAACCTTGCTTAAT 58.420 37.500 0.00 0.00 0.00 1.40
2079 2309 4.219115 TCCCAACAACCTTGCTTAATCAA 58.781 39.130 0.00 0.00 0.00 2.57
2088 2318 8.680903 ACAACCTTGCTTAATCAATCTTATCTG 58.319 33.333 0.00 0.00 0.00 2.90
2157 2387 2.729028 ATTTTGGTGATACCCTCCCG 57.271 50.000 0.00 0.00 37.50 5.14
2168 2398 4.598894 CCTCCCGAGGCTCGCATG 62.599 72.222 30.55 19.96 42.44 4.06
2175 2405 3.709633 AGGCTCGCATGGCTCACA 61.710 61.111 0.00 0.00 38.54 3.58
2189 2419 5.172687 TGGCTCACATTGGACTATAACAA 57.827 39.130 0.00 0.00 0.00 2.83
2190 2420 5.565509 TGGCTCACATTGGACTATAACAAA 58.434 37.500 0.00 0.00 0.00 2.83
2202 2432 8.106247 TGGACTATAACAAATTTGAAGGTCAC 57.894 34.615 24.64 15.44 0.00 3.67
2225 2455 3.507411 TCCCAGCTTCGCTAGGTAATAT 58.493 45.455 0.50 0.00 38.54 1.28
2255 2485 6.006449 GGCTATCAACATTGGACCTATCATT 58.994 40.000 0.00 0.00 0.00 2.57
2270 2500 6.624423 ACCTATCATTCAACAAATTGACAGC 58.376 36.000 0.00 0.00 44.66 4.40
2311 2541 2.161609 GGTAGGCTTGGAATGTTGAACG 59.838 50.000 0.00 0.00 0.00 3.95
2376 2606 3.870538 AGCTGGGAATTCATAGATGCA 57.129 42.857 7.93 0.00 0.00 3.96
2439 2669 7.769044 GGTCAAAATCAGTTACAAGGAGCTATA 59.231 37.037 0.00 0.00 0.00 1.31
2444 2674 6.614694 TCAGTTACAAGGAGCTATACCAAA 57.385 37.500 0.00 0.00 0.00 3.28
2449 2679 7.770897 AGTTACAAGGAGCTATACCAAATTCTG 59.229 37.037 0.00 0.00 0.00 3.02
2452 2682 7.630082 ACAAGGAGCTATACCAAATTCTGTTA 58.370 34.615 0.00 0.00 0.00 2.41
2454 2684 6.292150 AGGAGCTATACCAAATTCTGTTAGC 58.708 40.000 0.00 0.00 0.00 3.09
2476 2706 4.493547 CAACCTGTCAAGCAAACTTCAAA 58.506 39.130 0.00 0.00 32.29 2.69
2477 2707 5.111293 CAACCTGTCAAGCAAACTTCAAAT 58.889 37.500 0.00 0.00 32.29 2.32
2482 2712 7.284489 ACCTGTCAAGCAAACTTCAAATACTAA 59.716 33.333 0.00 0.00 32.29 2.24
2483 2713 7.591426 CCTGTCAAGCAAACTTCAAATACTAAC 59.409 37.037 0.00 0.00 32.29 2.34
2548 2778 4.229582 TGGGGAATCTTAGTGGCTTAACAT 59.770 41.667 0.00 0.00 0.00 2.71
2554 2784 9.609346 GGAATCTTAGTGGCTTAACATTACTAA 57.391 33.333 0.00 0.00 34.00 2.24
2576 2806 2.802816 ACTTGCGTAGAAACAAGCTCAG 59.197 45.455 2.80 0.00 45.74 3.35
2617 2847 5.243730 TGGGTTGGAAAGCTGAAAAATCTAG 59.756 40.000 0.00 0.00 45.30 2.43
2620 2850 6.215845 GTTGGAAAGCTGAAAAATCTAGCAA 58.784 36.000 0.00 0.00 39.84 3.91
2680 2910 9.976511 CAATACCAAACTCTATCGGTAATCTTA 57.023 33.333 0.00 0.00 37.53 2.10
2743 2973 2.595238 GTCCGATACCCTCCAGTATGT 58.405 52.381 0.00 0.00 33.05 2.29
2749 2979 4.099573 CGATACCCTCCAGTATGTGAAACT 59.900 45.833 0.00 0.00 38.04 2.66
2751 2981 4.287766 ACCCTCCAGTATGTGAAACTTC 57.712 45.455 0.00 0.00 38.04 3.01
2765 5421 3.316029 TGAAACTTCACCATGCTCACAAG 59.684 43.478 0.00 0.00 31.01 3.16
2773 5429 1.270550 CCATGCTCACAAGGTTGAACC 59.729 52.381 6.16 6.16 38.99 3.62
2809 5465 4.553678 TCTACAGGGTAACATTCCTAGGG 58.446 47.826 9.46 0.00 39.74 3.53
2862 5518 9.231297 ACCATATGTGCATTATCCTACAATAAC 57.769 33.333 1.24 0.00 0.00 1.89
2953 5609 5.711698 ACAAACTTTCTGGGGAAATTCCTA 58.288 37.500 12.28 0.88 40.19 2.94
2986 5642 1.066286 AGTGTCAAGAGCTGCAGATCC 60.066 52.381 27.52 13.21 0.00 3.36
2990 5646 0.540454 CAAGAGCTGCAGATCCTCCA 59.460 55.000 27.52 0.00 0.00 3.86
3015 5671 3.455910 TGGACCAGAATATTCTCACAGGG 59.544 47.826 15.24 14.70 34.74 4.45
3079 5735 5.909610 GTGCTCAACTTTTCACATAACAGTC 59.090 40.000 0.00 0.00 0.00 3.51
3084 5740 7.047891 TCAACTTTTCACATAACAGTCTGTCT 58.952 34.615 5.82 0.00 0.00 3.41
3194 5850 8.149631 AGAAATGGGGTATTTGAAAATGTCAT 57.850 30.769 0.00 0.00 39.06 3.06
3218 5874 3.311048 GCTGTTTCTCTCGATGGGAATTC 59.689 47.826 0.00 0.00 0.00 2.17
3311 5967 6.600032 AGACTGTACTACTTGGTCAGAGTATG 59.400 42.308 0.00 0.00 0.00 2.39
3345 6001 4.729227 TGGCTTCACATCACTCGTATTA 57.271 40.909 0.00 0.00 0.00 0.98
3348 6004 5.753438 TGGCTTCACATCACTCGTATTATTC 59.247 40.000 0.00 0.00 0.00 1.75
3349 6005 5.107837 GGCTTCACATCACTCGTATTATTCG 60.108 44.000 0.00 0.00 0.00 3.34
3350 6006 5.610552 GCTTCACATCACTCGTATTATTCGC 60.611 44.000 0.00 0.00 0.00 4.70
3370 6026 3.192844 CGCTTACTTTGTACTCCTGGAGA 59.807 47.826 29.71 10.90 33.32 3.71
3489 6145 1.142870 TCTGAGTCAAACCTGGTTGGG 59.857 52.381 13.79 8.92 41.11 4.12
3597 6253 6.204688 TGAGATACGCAGACAAAAGTTTCATT 59.795 34.615 0.00 0.00 0.00 2.57
3606 6262 7.561556 CAGACAAAAGTTTCATTTCAGAATGC 58.438 34.615 0.00 0.00 41.94 3.56
3649 6305 7.258441 TCGACATCGAAATCTTGTTTCTATCT 58.742 34.615 0.51 0.00 46.30 1.98
3650 6306 7.759886 TCGACATCGAAATCTTGTTTCTATCTT 59.240 33.333 0.51 0.00 46.30 2.40
3660 6316 7.076842 TCTTGTTTCTATCTTAACAGCATGC 57.923 36.000 10.51 10.51 42.53 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.909700 AACAATGGCGGTGATGAACT 58.090 45.000 0.00 0.00 0.00 3.01
1 2 2.747446 AGTAACAATGGCGGTGATGAAC 59.253 45.455 0.00 0.00 0.00 3.18
2 3 2.746904 CAGTAACAATGGCGGTGATGAA 59.253 45.455 0.00 0.00 0.00 2.57
3 4 2.290008 ACAGTAACAATGGCGGTGATGA 60.290 45.455 0.00 0.00 0.00 2.92
4 5 2.083774 ACAGTAACAATGGCGGTGATG 58.916 47.619 0.00 0.00 0.00 3.07
5 6 2.489938 ACAGTAACAATGGCGGTGAT 57.510 45.000 0.00 0.00 0.00 3.06
6 7 2.264005 AACAGTAACAATGGCGGTGA 57.736 45.000 0.00 0.00 0.00 4.02
7 8 4.223659 GTTTAACAGTAACAATGGCGGTG 58.776 43.478 0.00 0.00 0.00 4.94
8 9 3.884091 TGTTTAACAGTAACAATGGCGGT 59.116 39.130 0.00 0.00 32.89 5.68
9 10 4.023536 AGTGTTTAACAGTAACAATGGCGG 60.024 41.667 3.30 0.00 37.26 6.13
10 11 5.103290 AGTGTTTAACAGTAACAATGGCG 57.897 39.130 3.30 0.00 37.26 5.69
11 12 6.500041 TCAAGTGTTTAACAGTAACAATGGC 58.500 36.000 5.81 0.00 37.26 4.40
12 13 6.636850 GCTCAAGTGTTTAACAGTAACAATGG 59.363 38.462 5.81 0.00 37.26 3.16
13 14 6.636850 GGCTCAAGTGTTTAACAGTAACAATG 59.363 38.462 5.81 0.98 37.26 2.82
14 15 6.238925 GGGCTCAAGTGTTTAACAGTAACAAT 60.239 38.462 5.81 0.00 37.26 2.71
15 16 5.066764 GGGCTCAAGTGTTTAACAGTAACAA 59.933 40.000 5.81 0.00 37.26 2.83
16 17 4.577283 GGGCTCAAGTGTTTAACAGTAACA 59.423 41.667 5.81 0.00 30.24 2.41
17 18 4.577283 TGGGCTCAAGTGTTTAACAGTAAC 59.423 41.667 5.81 0.00 30.24 2.50
18 19 4.783055 TGGGCTCAAGTGTTTAACAGTAA 58.217 39.130 5.81 0.00 30.24 2.24
19 20 4.425180 TGGGCTCAAGTGTTTAACAGTA 57.575 40.909 5.81 0.00 30.24 2.74
20 21 3.290948 TGGGCTCAAGTGTTTAACAGT 57.709 42.857 0.00 0.00 32.07 3.55
21 22 5.003804 ACTATGGGCTCAAGTGTTTAACAG 58.996 41.667 0.00 0.00 0.00 3.16
22 23 4.980573 ACTATGGGCTCAAGTGTTTAACA 58.019 39.130 0.00 0.00 0.00 2.41
23 24 8.904099 ATATACTATGGGCTCAAGTGTTTAAC 57.096 34.615 10.53 0.00 0.00 2.01
24 25 8.154856 GGATATACTATGGGCTCAAGTGTTTAA 58.845 37.037 10.53 0.00 0.00 1.52
25 26 7.256547 GGGATATACTATGGGCTCAAGTGTTTA 60.257 40.741 10.53 1.99 0.00 2.01
26 27 6.465894 GGGATATACTATGGGCTCAAGTGTTT 60.466 42.308 10.53 1.51 0.00 2.83
27 28 5.013183 GGGATATACTATGGGCTCAAGTGTT 59.987 44.000 10.53 2.99 0.00 3.32
28 29 4.532521 GGGATATACTATGGGCTCAAGTGT 59.467 45.833 10.53 7.31 0.00 3.55
29 30 4.532126 TGGGATATACTATGGGCTCAAGTG 59.468 45.833 10.53 0.00 0.00 3.16
30 31 4.763355 TGGGATATACTATGGGCTCAAGT 58.237 43.478 0.00 0.00 0.00 3.16
31 32 5.762179 TTGGGATATACTATGGGCTCAAG 57.238 43.478 0.00 0.00 0.00 3.02
32 33 6.484288 CATTTGGGATATACTATGGGCTCAA 58.516 40.000 0.00 0.00 0.00 3.02
33 34 5.573502 GCATTTGGGATATACTATGGGCTCA 60.574 44.000 0.00 0.00 0.00 4.26
34 35 4.884164 GCATTTGGGATATACTATGGGCTC 59.116 45.833 0.00 0.00 0.00 4.70
35 36 4.292041 TGCATTTGGGATATACTATGGGCT 59.708 41.667 0.00 0.00 0.00 5.19
36 37 4.599041 TGCATTTGGGATATACTATGGGC 58.401 43.478 0.00 0.00 0.00 5.36
37 38 6.721208 ACTTTGCATTTGGGATATACTATGGG 59.279 38.462 0.00 0.00 0.00 4.00
38 39 7.765695 ACTTTGCATTTGGGATATACTATGG 57.234 36.000 0.00 0.00 0.00 2.74
39 40 8.849168 TCAACTTTGCATTTGGGATATACTATG 58.151 33.333 0.00 0.00 0.00 2.23
40 41 8.850156 GTCAACTTTGCATTTGGGATATACTAT 58.150 33.333 0.00 0.00 0.00 2.12
41 42 7.011950 CGTCAACTTTGCATTTGGGATATACTA 59.988 37.037 0.00 0.00 0.00 1.82
42 43 6.183360 CGTCAACTTTGCATTTGGGATATACT 60.183 38.462 0.00 0.00 0.00 2.12
43 44 5.971202 CGTCAACTTTGCATTTGGGATATAC 59.029 40.000 0.00 0.00 0.00 1.47
44 45 5.650266 ACGTCAACTTTGCATTTGGGATATA 59.350 36.000 0.00 0.00 0.00 0.86
45 46 4.462483 ACGTCAACTTTGCATTTGGGATAT 59.538 37.500 0.00 0.00 0.00 1.63
46 47 3.823873 ACGTCAACTTTGCATTTGGGATA 59.176 39.130 0.00 0.00 0.00 2.59
47 48 2.627699 ACGTCAACTTTGCATTTGGGAT 59.372 40.909 0.00 0.00 0.00 3.85
48 49 2.028130 ACGTCAACTTTGCATTTGGGA 58.972 42.857 0.00 0.00 0.00 4.37
49 50 2.507339 ACGTCAACTTTGCATTTGGG 57.493 45.000 0.00 0.00 0.00 4.12
50 51 4.355437 TGTTACGTCAACTTTGCATTTGG 58.645 39.130 0.00 0.00 38.05 3.28
51 52 4.440758 CCTGTTACGTCAACTTTGCATTTG 59.559 41.667 0.00 0.00 38.05 2.32
52 53 4.606961 CCTGTTACGTCAACTTTGCATTT 58.393 39.130 0.00 0.00 38.05 2.32
53 54 3.550030 GCCTGTTACGTCAACTTTGCATT 60.550 43.478 0.00 0.00 38.05 3.56
54 55 2.031157 GCCTGTTACGTCAACTTTGCAT 60.031 45.455 0.00 0.00 38.05 3.96
55 56 1.332375 GCCTGTTACGTCAACTTTGCA 59.668 47.619 0.00 0.00 38.05 4.08
56 57 1.334689 GGCCTGTTACGTCAACTTTGC 60.335 52.381 0.00 0.69 38.05 3.68
57 58 2.218603 AGGCCTGTTACGTCAACTTTG 58.781 47.619 3.11 0.00 38.05 2.77
58 59 2.632987 AGGCCTGTTACGTCAACTTT 57.367 45.000 3.11 0.00 38.05 2.66
59 60 2.632987 AAGGCCTGTTACGTCAACTT 57.367 45.000 5.69 0.00 38.05 2.66
60 61 3.756933 TTAAGGCCTGTTACGTCAACT 57.243 42.857 5.69 0.00 38.05 3.16
61 62 3.373130 GGATTAAGGCCTGTTACGTCAAC 59.627 47.826 5.69 0.00 37.67 3.18
62 63 3.602483 GGATTAAGGCCTGTTACGTCAA 58.398 45.455 5.69 0.00 0.00 3.18
63 64 2.093341 GGGATTAAGGCCTGTTACGTCA 60.093 50.000 5.69 0.00 0.00 4.35
64 65 2.169978 AGGGATTAAGGCCTGTTACGTC 59.830 50.000 5.69 0.00 0.00 4.34
65 66 2.169978 GAGGGATTAAGGCCTGTTACGT 59.830 50.000 5.69 0.00 0.00 3.57
66 67 2.434702 AGAGGGATTAAGGCCTGTTACG 59.565 50.000 5.69 0.00 0.00 3.18
67 68 3.492829 CGAGAGGGATTAAGGCCTGTTAC 60.493 52.174 5.69 0.00 0.00 2.50
68 69 2.698797 CGAGAGGGATTAAGGCCTGTTA 59.301 50.000 5.69 0.00 0.00 2.41
69 70 1.486726 CGAGAGGGATTAAGGCCTGTT 59.513 52.381 5.69 0.00 0.00 3.16
70 71 1.123928 CGAGAGGGATTAAGGCCTGT 58.876 55.000 5.69 0.00 0.00 4.00
71 72 1.342819 CTCGAGAGGGATTAAGGCCTG 59.657 57.143 5.69 0.00 0.00 4.85
72 73 1.218196 TCTCGAGAGGGATTAAGGCCT 59.782 52.381 12.08 0.00 34.08 5.19
73 74 1.341852 GTCTCGAGAGGGATTAAGGCC 59.658 57.143 17.22 0.00 46.22 5.19
74 75 2.032620 TGTCTCGAGAGGGATTAAGGC 58.967 52.381 17.22 0.00 46.22 4.35
75 76 6.406692 TTTATGTCTCGAGAGGGATTAAGG 57.593 41.667 17.22 0.00 46.22 2.69
76 77 6.422400 GCTTTTATGTCTCGAGAGGGATTAAG 59.578 42.308 17.22 15.21 46.22 1.85
77 78 6.127168 TGCTTTTATGTCTCGAGAGGGATTAA 60.127 38.462 17.22 5.94 46.22 1.40
78 79 5.362717 TGCTTTTATGTCTCGAGAGGGATTA 59.637 40.000 17.22 0.00 46.22 1.75
79 80 4.162320 TGCTTTTATGTCTCGAGAGGGATT 59.838 41.667 17.22 1.64 46.22 3.01
80 81 3.706594 TGCTTTTATGTCTCGAGAGGGAT 59.293 43.478 17.22 10.77 46.22 3.85
81 82 3.096852 TGCTTTTATGTCTCGAGAGGGA 58.903 45.455 17.22 3.03 39.15 4.20
82 83 3.190874 GTGCTTTTATGTCTCGAGAGGG 58.809 50.000 17.22 2.44 0.00 4.30
83 84 3.849911 TGTGCTTTTATGTCTCGAGAGG 58.150 45.455 17.22 0.00 0.00 3.69
84 85 3.862267 CCTGTGCTTTTATGTCTCGAGAG 59.138 47.826 17.22 3.05 0.00 3.20
85 86 3.368427 CCCTGTGCTTTTATGTCTCGAGA 60.368 47.826 12.08 12.08 0.00 4.04
86 87 2.932614 CCCTGTGCTTTTATGTCTCGAG 59.067 50.000 5.93 5.93 0.00 4.04
87 88 2.935238 GCCCTGTGCTTTTATGTCTCGA 60.935 50.000 0.00 0.00 36.87 4.04
88 89 1.398390 GCCCTGTGCTTTTATGTCTCG 59.602 52.381 0.00 0.00 36.87 4.04
89 90 2.436417 TGCCCTGTGCTTTTATGTCTC 58.564 47.619 0.00 0.00 42.00 3.36
90 91 2.584835 TGCCCTGTGCTTTTATGTCT 57.415 45.000 0.00 0.00 42.00 3.41
91 92 2.558359 ACTTGCCCTGTGCTTTTATGTC 59.442 45.455 0.00 0.00 42.00 3.06
92 93 2.297033 CACTTGCCCTGTGCTTTTATGT 59.703 45.455 0.00 0.00 42.00 2.29
93 94 2.950433 CACTTGCCCTGTGCTTTTATG 58.050 47.619 0.00 0.00 42.00 1.90
101 102 0.175302 TTTGTTGCACTTGCCCTGTG 59.825 50.000 0.00 0.00 41.18 3.66
102 103 1.122227 ATTTGTTGCACTTGCCCTGT 58.878 45.000 0.00 0.00 41.18 4.00
103 104 3.598019 ATATTTGTTGCACTTGCCCTG 57.402 42.857 0.00 0.00 41.18 4.45
104 105 3.447229 GGTATATTTGTTGCACTTGCCCT 59.553 43.478 0.00 0.00 41.18 5.19
105 106 3.447229 AGGTATATTTGTTGCACTTGCCC 59.553 43.478 0.00 0.00 41.18 5.36
106 107 4.423732 CAGGTATATTTGTTGCACTTGCC 58.576 43.478 0.00 0.00 41.18 4.52
107 108 4.157656 TCCAGGTATATTTGTTGCACTTGC 59.842 41.667 0.00 0.00 42.50 4.01
108 109 5.895636 TCCAGGTATATTTGTTGCACTTG 57.104 39.130 0.00 0.00 0.00 3.16
109 110 7.480760 AATTCCAGGTATATTTGTTGCACTT 57.519 32.000 0.00 0.00 0.00 3.16
110 111 8.052748 TCTAATTCCAGGTATATTTGTTGCACT 58.947 33.333 0.00 0.00 0.00 4.40
111 112 8.220755 TCTAATTCCAGGTATATTTGTTGCAC 57.779 34.615 0.00 0.00 0.00 4.57
112 113 8.682710 GTTCTAATTCCAGGTATATTTGTTGCA 58.317 33.333 0.00 0.00 0.00 4.08
113 114 8.903820 AGTTCTAATTCCAGGTATATTTGTTGC 58.096 33.333 0.00 0.00 0.00 4.17
115 116 9.408648 CCAGTTCTAATTCCAGGTATATTTGTT 57.591 33.333 0.00 0.00 0.00 2.83
116 117 8.778059 TCCAGTTCTAATTCCAGGTATATTTGT 58.222 33.333 0.00 0.00 0.00 2.83
117 118 9.627123 TTCCAGTTCTAATTCCAGGTATATTTG 57.373 33.333 0.00 0.00 0.00 2.32
124 125 8.778059 TGTATATTTCCAGTTCTAATTCCAGGT 58.222 33.333 0.00 0.00 0.00 4.00
125 126 9.799106 ATGTATATTTCCAGTTCTAATTCCAGG 57.201 33.333 0.00 0.00 0.00 4.45
146 147 9.445878 CATGAAGCCTCTTAATACATGATGTAT 57.554 33.333 12.11 12.11 44.79 2.29
147 148 8.432013 ACATGAAGCCTCTTAATACATGATGTA 58.568 33.333 7.86 7.86 37.24 2.29
148 149 7.285566 ACATGAAGCCTCTTAATACATGATGT 58.714 34.615 2.65 2.65 37.59 3.06
149 150 7.741027 ACATGAAGCCTCTTAATACATGATG 57.259 36.000 0.00 0.00 37.59 3.07
150 151 8.757982 AAACATGAAGCCTCTTAATACATGAT 57.242 30.769 0.00 0.00 37.59 2.45
151 152 7.828717 TGAAACATGAAGCCTCTTAATACATGA 59.171 33.333 0.00 0.00 37.59 3.07
152 153 7.988737 TGAAACATGAAGCCTCTTAATACATG 58.011 34.615 0.00 0.00 39.27 3.21
153 154 8.627403 CATGAAACATGAAGCCTCTTAATACAT 58.373 33.333 0.00 0.00 0.00 2.29
154 155 7.415541 GCATGAAACATGAAGCCTCTTAATACA 60.416 37.037 14.65 0.00 0.00 2.29
155 156 6.914757 GCATGAAACATGAAGCCTCTTAATAC 59.085 38.462 14.65 0.00 0.00 1.89
156 157 6.830324 AGCATGAAACATGAAGCCTCTTAATA 59.170 34.615 14.65 0.00 0.00 0.98
157 158 5.655532 AGCATGAAACATGAAGCCTCTTAAT 59.344 36.000 14.65 0.00 0.00 1.40
158 159 5.012239 AGCATGAAACATGAAGCCTCTTAA 58.988 37.500 14.65 0.00 0.00 1.85
159 160 4.592942 AGCATGAAACATGAAGCCTCTTA 58.407 39.130 14.65 0.00 0.00 2.10
160 161 3.428532 AGCATGAAACATGAAGCCTCTT 58.571 40.909 14.65 0.00 0.00 2.85
161 162 3.083122 AGCATGAAACATGAAGCCTCT 57.917 42.857 14.65 0.00 0.00 3.69
162 163 3.057033 ACAAGCATGAAACATGAAGCCTC 60.057 43.478 14.65 0.00 0.00 4.70
163 164 2.895404 ACAAGCATGAAACATGAAGCCT 59.105 40.909 14.65 0.93 0.00 4.58
164 165 2.991190 CACAAGCATGAAACATGAAGCC 59.009 45.455 14.65 0.00 0.00 4.35
165 166 2.991190 CCACAAGCATGAAACATGAAGC 59.009 45.455 14.65 1.00 0.00 3.86
166 167 4.508461 TCCACAAGCATGAAACATGAAG 57.492 40.909 14.65 6.48 0.00 3.02
167 168 4.933505 TTCCACAAGCATGAAACATGAA 57.066 36.364 14.65 0.00 0.00 2.57
168 169 4.619973 GTTTCCACAAGCATGAAACATGA 58.380 39.130 14.65 0.00 44.46 3.07
169 170 4.977741 GTTTCCACAAGCATGAAACATG 57.022 40.909 0.00 7.29 44.46 3.21
203 204 1.166531 GCGGTTCTCCAGCAAACACT 61.167 55.000 0.00 0.00 34.90 3.55
207 208 1.519408 GTAAGCGGTTCTCCAGCAAA 58.481 50.000 1.59 0.00 36.34 3.68
208 209 0.669318 CGTAAGCGGTTCTCCAGCAA 60.669 55.000 1.59 0.00 36.34 3.91
214 215 3.492011 TCTGTTTTTCGTAAGCGGTTCTC 59.508 43.478 1.59 0.00 38.89 2.87
215 216 3.460103 TCTGTTTTTCGTAAGCGGTTCT 58.540 40.909 1.59 0.00 38.89 3.01
218 219 6.490566 AATATTCTGTTTTTCGTAAGCGGT 57.509 33.333 0.00 0.00 38.89 5.68
220 221 6.799925 ACCAAATATTCTGTTTTTCGTAAGCG 59.200 34.615 0.00 0.00 39.92 4.68
226 227 6.524586 GCTCTGACCAAATATTCTGTTTTTCG 59.475 38.462 0.00 0.00 0.00 3.46
235 236 4.513318 GCCTACTGCTCTGACCAAATATTC 59.487 45.833 0.00 0.00 36.87 1.75
247 248 2.157640 AGAGTCATGCCTACTGCTCT 57.842 50.000 0.00 0.00 42.00 4.09
248 249 2.955660 ACTAGAGTCATGCCTACTGCTC 59.044 50.000 0.00 0.00 42.00 4.26
257 258 4.573607 TGAAATGATGCACTAGAGTCATGC 59.426 41.667 0.00 7.01 39.88 4.06
266 267 9.656040 AAATATTTTTGCTGAAATGATGCACTA 57.344 25.926 0.00 0.00 36.37 2.74
275 276 9.949174 GTTTGGTGAAAATATTTTTGCTGAAAT 57.051 25.926 14.45 3.89 33.95 2.17
277 278 7.554118 TGGTTTGGTGAAAATATTTTTGCTGAA 59.446 29.630 14.45 5.64 0.00 3.02
326 327 1.375523 GCCCGGACAATTGAGTCGT 60.376 57.895 13.59 0.00 39.42 4.34
348 349 8.524870 AGCTGTCAAATCACAAATTCAATAAC 57.475 30.769 0.00 0.00 0.00 1.89
351 352 6.014840 AGGAGCTGTCAAATCACAAATTCAAT 60.015 34.615 0.00 0.00 0.00 2.57
357 358 3.745975 CGTAGGAGCTGTCAAATCACAAA 59.254 43.478 0.00 0.00 0.00 2.83
384 389 1.237285 ACAACGATTGGCCTGACTGC 61.237 55.000 3.32 0.00 34.12 4.40
411 416 1.069568 TGTAACGGCAATGTGCTTTCG 60.070 47.619 0.00 0.00 44.28 3.46
412 417 2.697431 TGTAACGGCAATGTGCTTTC 57.303 45.000 0.00 0.00 44.28 2.62
416 422 3.479505 TTGTATGTAACGGCAATGTGC 57.520 42.857 0.00 0.00 44.08 4.57
434 440 9.603921 ATTAATTAGCTTGGAACCATCATTTTG 57.396 29.630 0.00 0.00 0.00 2.44
445 451 9.920946 AGACCTCATAAATTAATTAGCTTGGAA 57.079 29.630 0.01 0.00 0.00 3.53
453 459 8.876181 TCGGATGGAGACCTCATAAATTAATTA 58.124 33.333 0.01 0.00 0.00 1.40
462 468 3.026707 TGTTCGGATGGAGACCTCATA 57.973 47.619 0.00 0.00 0.00 2.15
469 475 3.427573 TCTAGTGTTGTTCGGATGGAGA 58.572 45.455 0.00 0.00 0.00 3.71
479 485 5.542635 TCCCAGTATGAGTTCTAGTGTTGTT 59.457 40.000 0.00 0.00 39.69 2.83
520 527 6.267699 TCACTGGTCTAACATTCTCTTCTTCA 59.732 38.462 0.00 0.00 0.00 3.02
567 574 0.376152 GATCTCCGCGTCGTTCAGTA 59.624 55.000 4.92 0.00 0.00 2.74
573 580 1.707239 GAGAGTGATCTCCGCGTCGT 61.707 60.000 4.92 0.00 41.26 4.34
581 588 5.385198 AGGAACTGGATAGAGAGTGATCTC 58.615 45.833 0.00 0.00 37.18 2.75
731 739 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
733 741 9.659830 GTGTTAAAAACGCTCTTATATTATGGG 57.340 33.333 0.00 0.00 38.81 4.00
747 755 4.635961 ACTACGCTAGTGTTAAAAACGC 57.364 40.909 15.28 0.00 42.10 4.84
758 766 4.870363 TCCGTTTTTAACACTACGCTAGT 58.130 39.130 0.00 0.00 40.28 2.57
759 767 4.325472 CCTCCGTTTTTAACACTACGCTAG 59.675 45.833 0.00 0.00 32.97 3.42
761 769 3.062042 CCTCCGTTTTTAACACTACGCT 58.938 45.455 0.00 0.00 32.97 5.07
762 770 2.158254 CCCTCCGTTTTTAACACTACGC 59.842 50.000 0.00 0.00 32.97 4.42
763 771 3.652274 TCCCTCCGTTTTTAACACTACG 58.348 45.455 0.00 0.00 0.00 3.51
764 772 4.635223 ACTCCCTCCGTTTTTAACACTAC 58.365 43.478 0.00 0.00 0.00 2.73
765 773 4.961438 ACTCCCTCCGTTTTTAACACTA 57.039 40.909 0.00 0.00 0.00 2.74
767 775 3.434641 GCTACTCCCTCCGTTTTTAACAC 59.565 47.826 0.00 0.00 0.00 3.32
770 778 3.579586 TCAGCTACTCCCTCCGTTTTTAA 59.420 43.478 0.00 0.00 0.00 1.52
771 779 3.056322 GTCAGCTACTCCCTCCGTTTTTA 60.056 47.826 0.00 0.00 0.00 1.52
772 780 1.975680 TCAGCTACTCCCTCCGTTTTT 59.024 47.619 0.00 0.00 0.00 1.94
774 782 0.896226 GTCAGCTACTCCCTCCGTTT 59.104 55.000 0.00 0.00 0.00 3.60
808 914 1.044611 GGAGCTGAGGACCTGTATCC 58.955 60.000 0.00 0.00 39.28 2.59
811 917 2.950781 CTATGGAGCTGAGGACCTGTA 58.049 52.381 0.00 0.00 0.00 2.74
830 936 5.046304 TGTCTTATCTTAAGCTTGACTGGCT 60.046 40.000 9.86 0.00 42.31 4.75
831 937 5.178797 TGTCTTATCTTAAGCTTGACTGGC 58.821 41.667 9.86 0.00 0.00 4.85
832 938 7.044181 TCATGTCTTATCTTAAGCTTGACTGG 58.956 38.462 9.86 3.15 0.00 4.00
834 940 7.124901 TCCTCATGTCTTATCTTAAGCTTGACT 59.875 37.037 9.86 0.00 0.00 3.41
844 950 7.092712 TGGTCAGAAATCCTCATGTCTTATCTT 60.093 37.037 0.00 0.00 0.00 2.40
852 958 4.778579 CATCTGGTCAGAAATCCTCATGT 58.221 43.478 4.67 0.00 41.36 3.21
854 960 3.201487 TGCATCTGGTCAGAAATCCTCAT 59.799 43.478 4.67 0.00 41.36 2.90
860 966 3.504906 CACACTTGCATCTGGTCAGAAAT 59.495 43.478 4.67 0.00 41.36 2.17
865 971 1.596603 CACACACTTGCATCTGGTCA 58.403 50.000 0.00 0.00 0.00 4.02
872 978 2.606961 CGCGTCCACACACTTGCAT 61.607 57.895 0.00 0.00 0.00 3.96
889 995 2.099062 GCTTTCACAGCGCCATCG 59.901 61.111 2.29 0.00 39.29 3.84
906 1012 1.271379 GTCCCAGGGGTTTTAAAAGCG 59.729 52.381 20.54 9.53 37.28 4.68
910 1016 2.109304 CTGAGGTCCCAGGGGTTTTAAA 59.891 50.000 5.33 0.00 36.47 1.52
913 1019 2.081585 GCTGAGGTCCCAGGGGTTTT 62.082 60.000 5.33 0.00 34.82 2.43
947 1053 4.020617 TGGGCTGGAACGCTGGAG 62.021 66.667 0.00 0.00 0.00 3.86
960 1066 2.004808 GCTGGGAATAAAGCGTGGGC 62.005 60.000 0.00 0.00 40.37 5.36
962 1068 1.017387 GAGCTGGGAATAAAGCGTGG 58.983 55.000 0.00 0.00 44.34 4.94
966 1072 2.162408 GTGTGTGAGCTGGGAATAAAGC 59.838 50.000 0.00 0.00 39.82 3.51
1012 1118 0.318107 CAGAACGGCAGCCTTTGTTG 60.318 55.000 8.15 2.80 0.00 3.33
1015 1125 1.283793 CACAGAACGGCAGCCTTTG 59.716 57.895 8.15 3.97 0.00 2.77
1072 1184 3.997021 AGACAAAGTCGACAGCAATTAGG 59.003 43.478 19.50 1.91 37.67 2.69
1073 1185 4.686091 TGAGACAAAGTCGACAGCAATTAG 59.314 41.667 19.50 1.06 37.67 1.73
1075 1187 3.466836 TGAGACAAAGTCGACAGCAATT 58.533 40.909 19.50 0.00 37.67 2.32
1087 1298 2.624838 ACCCACAGCAATTGAGACAAAG 59.375 45.455 10.34 0.00 0.00 2.77
1101 1312 3.596066 CTGACGGCCTCACCCACAG 62.596 68.421 0.00 0.00 33.70 3.66
1182 1412 2.705658 TCATGTGGACAGAGGTTGAACT 59.294 45.455 0.00 0.00 0.00 3.01
1183 1413 3.070018 CTCATGTGGACAGAGGTTGAAC 58.930 50.000 0.00 0.00 0.00 3.18
1185 1415 2.329267 ACTCATGTGGACAGAGGTTGA 58.671 47.619 0.00 0.00 33.76 3.18
1186 1416 2.847327 ACTCATGTGGACAGAGGTTG 57.153 50.000 0.00 0.00 33.76 3.77
1187 1417 2.975489 AGAACTCATGTGGACAGAGGTT 59.025 45.455 0.00 3.73 33.76 3.50
1236 1466 9.918630 CCTTCTCTGATTAACAATCACAAAATT 57.081 29.630 0.00 0.00 42.69 1.82
1237 1467 8.526147 CCCTTCTCTGATTAACAATCACAAAAT 58.474 33.333 0.00 0.00 42.69 1.82
1238 1468 7.505585 ACCCTTCTCTGATTAACAATCACAAAA 59.494 33.333 0.00 0.00 42.69 2.44
1239 1469 7.004086 ACCCTTCTCTGATTAACAATCACAAA 58.996 34.615 0.00 0.00 42.69 2.83
1240 1470 6.542821 ACCCTTCTCTGATTAACAATCACAA 58.457 36.000 0.00 0.00 42.69 3.33
1276 1506 4.900054 GGGTAGTATGTTCACCTATGGAGT 59.100 45.833 0.00 0.00 32.66 3.85
1302 1532 4.806330 CAAAGCATGAAGAAATGAGCACT 58.194 39.130 0.00 0.00 0.00 4.40
1338 1568 2.287188 CGGTTGATTGGCATACATGAGC 60.287 50.000 0.00 0.00 0.00 4.26
1381 1611 0.990282 ATGACCAGCAGGGCCAGTAT 60.990 55.000 6.18 0.00 45.14 2.12
1390 1620 2.943690 CTCCATCAGAAATGACCAGCAG 59.056 50.000 0.00 0.00 0.00 4.24
1396 1626 3.084039 TGCCAACTCCATCAGAAATGAC 58.916 45.455 0.00 0.00 0.00 3.06
1431 1661 1.373812 GCTGTTACCGGGGACTGTT 59.626 57.895 6.32 0.00 0.00 3.16
1471 1701 1.388547 GTGATGGCCCGCTTGAAATA 58.611 50.000 0.00 0.00 0.00 1.40
1508 1738 1.302511 GCGTTCCAAGAGCCCAAGA 60.303 57.895 0.00 0.00 0.00 3.02
1536 1766 2.353610 CCCCTCCCACTTGCAATGC 61.354 63.158 0.00 0.00 0.00 3.56
1554 1784 1.227943 TGTGAGGCTGCAGTTGACC 60.228 57.895 16.64 7.84 0.00 4.02
1572 1802 2.347490 GTGATGCGACCTGGGTGT 59.653 61.111 0.00 0.00 0.00 4.16
1585 1815 0.674895 GCAAGGTTCAGCTCCGTGAT 60.675 55.000 9.57 0.00 36.76 3.06
1590 1820 1.743252 CTCGGCAAGGTTCAGCTCC 60.743 63.158 0.00 0.00 0.00 4.70
1592 1822 2.359230 GCTCGGCAAGGTTCAGCT 60.359 61.111 0.00 0.00 0.00 4.24
1602 1832 2.281484 GACAACCCTTGCTCGGCA 60.281 61.111 0.00 0.00 36.47 5.69
1603 1833 2.281484 TGACAACCCTTGCTCGGC 60.281 61.111 0.00 0.00 0.00 5.54
1624 1854 0.468029 CCAAGGGATGGGGAAATCGG 60.468 60.000 0.00 0.00 46.27 4.18
1674 1904 3.019564 GCCAGTGAAGCTATTTGTGGAT 58.980 45.455 6.29 0.00 0.00 3.41
1699 1929 2.897969 GGAGACTGTTGAGTGGAGGTAA 59.102 50.000 0.00 0.00 30.16 2.85
1722 1952 3.951037 TCAGCCAAAGTTTTTGCAGTCTA 59.049 39.130 9.01 0.00 31.82 2.59
1747 1977 7.067533 GGAATGATCCCTTGCAAAGAGTTTTC 61.068 42.308 0.00 5.23 45.77 2.29
1776 2006 6.877611 AGGTTGGAACTATTTGTAAGTGTG 57.122 37.500 0.00 0.00 0.00 3.82
1810 2040 7.242101 ACCTATCAGGGAGTTACCAGATAGATA 59.758 40.741 19.23 3.23 46.45 1.98
1812 2042 5.375956 ACCTATCAGGGAGTTACCAGATAGA 59.624 44.000 19.23 0.00 46.45 1.98
1818 2048 3.769189 TCACCTATCAGGGAGTTACCA 57.231 47.619 0.00 0.00 40.58 3.25
1832 2062 6.216868 GCCTATATTAAGGGGGATTTCACCTA 59.783 42.308 0.00 0.00 40.05 3.08
1842 2072 4.388577 AAGCAAGCCTATATTAAGGGGG 57.611 45.455 0.00 0.00 37.11 5.40
1845 2075 6.959639 TTGGAAAGCAAGCCTATATTAAGG 57.040 37.500 0.00 0.00 39.87 2.69
1869 2099 8.450578 TTTCGGCAATCTGTAATTCTGATAAT 57.549 30.769 0.00 0.00 34.94 1.28
1872 2102 6.757897 TTTTCGGCAATCTGTAATTCTGAT 57.242 33.333 0.00 0.00 36.51 2.90
1875 2105 9.125026 AGATTATTTTCGGCAATCTGTAATTCT 57.875 29.630 0.00 0.00 37.57 2.40
1876 2106 9.387123 GAGATTATTTTCGGCAATCTGTAATTC 57.613 33.333 1.03 0.00 38.74 2.17
1877 2107 8.902806 TGAGATTATTTTCGGCAATCTGTAATT 58.097 29.630 1.03 0.00 38.74 1.40
1878 2108 8.345565 GTGAGATTATTTTCGGCAATCTGTAAT 58.654 33.333 1.03 0.00 38.74 1.89
1885 2115 3.315191 CCGGTGAGATTATTTTCGGCAAT 59.685 43.478 0.00 0.00 0.00 3.56
1900 2130 1.153628 GTGGGATCGTTCCGGTGAG 60.154 63.158 0.00 0.00 43.63 3.51
1990 2220 4.437682 TCGGAAATTGCCCTATCTCATT 57.562 40.909 0.00 0.00 0.00 2.57
2001 2231 1.474077 ACTGCCAGATTCGGAAATTGC 59.526 47.619 0.00 0.00 0.00 3.56
2010 2240 7.029563 CACCAAGTAATAAAACTGCCAGATTC 58.970 38.462 0.00 0.00 0.00 2.52
2012 2242 5.418840 CCACCAAGTAATAAAACTGCCAGAT 59.581 40.000 0.00 0.00 0.00 2.90
2017 2247 8.186163 GGTAATACCACCAAGTAATAAAACTGC 58.814 37.037 4.24 0.00 38.42 4.40
2018 2248 8.680001 GGGTAATACCACCAAGTAATAAAACTG 58.320 37.037 12.03 0.00 41.02 3.16
2019 2249 8.617491 AGGGTAATACCACCAAGTAATAAAACT 58.383 33.333 12.03 0.00 41.02 2.66
2025 2255 7.017254 CCTGATAGGGTAATACCACCAAGTAAT 59.983 40.741 12.03 0.00 41.02 1.89
2039 2269 5.954004 TGGGATACTACCTGATAGGGTAA 57.046 43.478 0.00 0.00 40.58 2.85
2042 2272 4.489737 TGTTGGGATACTACCTGATAGGG 58.510 47.826 0.00 0.00 40.58 3.53
2043 2273 5.221661 GGTTGTTGGGATACTACCTGATAGG 60.222 48.000 0.00 0.00 39.73 2.57
2055 2285 5.575157 TGATTAAGCAAGGTTGTTGGGATA 58.425 37.500 0.00 0.00 0.00 2.59
2134 2364 4.470602 GGGAGGGTATCACCAAAATTAGG 58.529 47.826 0.00 0.00 41.02 2.69
2157 2387 2.894387 GTGAGCCATGCGAGCCTC 60.894 66.667 0.00 0.00 0.00 4.70
2160 2390 1.063649 CAATGTGAGCCATGCGAGC 59.936 57.895 0.00 0.00 32.82 5.03
2164 2394 2.042686 TAGTCCAATGTGAGCCATGC 57.957 50.000 0.00 0.00 32.82 4.06
2168 2398 6.699575 ATTTGTTATAGTCCAATGTGAGCC 57.300 37.500 0.00 0.00 0.00 4.70
2173 2403 9.088987 ACCTTCAAATTTGTTATAGTCCAATGT 57.911 29.630 17.47 2.61 0.00 2.71
2174 2404 9.573133 GACCTTCAAATTTGTTATAGTCCAATG 57.427 33.333 17.47 2.05 0.00 2.82
2175 2405 9.308000 TGACCTTCAAATTTGTTATAGTCCAAT 57.692 29.630 17.47 0.00 0.00 3.16
2189 2419 2.827921 GCTGGGATGTGACCTTCAAATT 59.172 45.455 0.00 0.00 0.00 1.82
2190 2420 2.042162 AGCTGGGATGTGACCTTCAAAT 59.958 45.455 0.00 0.00 0.00 2.32
2225 2455 4.016444 GTCCAATGTTGATAGCCCTGAAA 58.984 43.478 0.00 0.00 0.00 2.69
2255 2485 5.450412 GGAACTTGAGCTGTCAATTTGTTGA 60.450 40.000 0.00 0.00 41.96 3.18
2376 2606 3.428999 GCAGAGATGTGCAATTGCTCAAT 60.429 43.478 31.84 24.57 45.82 2.57
2410 2640 6.128254 GCTCCTTGTAACTGATTTTGACCTAC 60.128 42.308 0.00 0.00 0.00 3.18
2416 2646 7.552687 TGGTATAGCTCCTTGTAACTGATTTTG 59.447 37.037 3.20 0.00 0.00 2.44
2439 2669 4.215109 ACAGGTTGCTAACAGAATTTGGT 58.785 39.130 0.00 0.00 0.00 3.67
2444 2674 3.503748 GCTTGACAGGTTGCTAACAGAAT 59.496 43.478 0.00 0.00 0.00 2.40
2449 2679 3.066760 AGTTTGCTTGACAGGTTGCTAAC 59.933 43.478 0.00 0.00 39.86 2.34
2452 2682 1.767759 AGTTTGCTTGACAGGTTGCT 58.232 45.000 0.00 0.00 0.00 3.91
2454 2684 3.781079 TGAAGTTTGCTTGACAGGTTG 57.219 42.857 0.00 0.00 34.61 3.77
2482 2712 7.036220 CCTGACAAGTCGTTTCTATCTAATGT 58.964 38.462 0.00 0.00 0.00 2.71
2483 2713 6.477033 CCCTGACAAGTCGTTTCTATCTAATG 59.523 42.308 0.00 0.00 0.00 1.90
2491 2721 1.760613 TGTCCCTGACAAGTCGTTTCT 59.239 47.619 0.00 0.00 39.78 2.52
2492 2722 2.234300 TGTCCCTGACAAGTCGTTTC 57.766 50.000 0.00 0.00 39.78 2.78
2559 2789 0.093705 CGCTGAGCTTGTTTCTACGC 59.906 55.000 1.78 0.00 0.00 4.42
2636 2866 3.806949 TTGGGCCAGTGAAGTTATTCT 57.193 42.857 6.23 0.00 36.33 2.40
2690 2920 8.646004 ACTCATTGCTTGCTAGATAGATCTTTA 58.354 33.333 0.00 0.00 38.32 1.85
2691 2921 7.507829 ACTCATTGCTTGCTAGATAGATCTTT 58.492 34.615 0.00 0.00 38.32 2.52
2708 2938 2.151202 TCGGACCTTCAAACTCATTGC 58.849 47.619 0.00 0.00 38.98 3.56
2743 2973 2.929641 TGTGAGCATGGTGAAGTTTCA 58.070 42.857 0.00 0.00 34.20 2.69
2753 2983 1.270550 GGTTCAACCTTGTGAGCATGG 59.729 52.381 0.00 0.00 43.34 3.66
2809 5465 1.134551 GGAGCCAGTGTGGAAGATCTC 60.135 57.143 0.00 0.00 40.96 2.75
2862 5518 7.612677 ACTCTGTAGGTATTGTTCCTTGTAAG 58.387 38.462 0.00 0.00 36.60 2.34
2917 5573 7.039784 CCCAGAAAGTTTGTTGGATGAAAGATA 60.040 37.037 14.49 0.00 32.34 1.98
2953 5609 3.388024 TCTTGACACTCACCTAAAGCACT 59.612 43.478 0.00 0.00 0.00 4.40
2986 5642 6.261826 GTGAGAATATTCTGGTCCATTTGGAG 59.738 42.308 22.61 0.00 40.57 3.86
2990 5646 6.125029 CCTGTGAGAATATTCTGGTCCATTT 58.875 40.000 22.61 0.00 37.73 2.32
3015 5671 3.181465 TGCTCAAAGACTCCGGAATATCC 60.181 47.826 5.23 0.00 0.00 2.59
3096 5752 9.553064 AGATATTTCAGGTCACTTATTGATGTC 57.447 33.333 0.00 0.00 36.32 3.06
3103 5759 7.861629 TGGTTCAGATATTTCAGGTCACTTAT 58.138 34.615 0.00 0.00 0.00 1.73
3163 5819 6.844097 TTCAAATACCCCATTTCTTGGTAC 57.156 37.500 0.00 0.00 44.83 3.34
3218 5874 1.966451 GCTCCACCACAAAGTCCCG 60.966 63.158 0.00 0.00 0.00 5.14
3311 5967 2.492088 GTGAAGCCAACCAAAGGGATAC 59.508 50.000 0.00 0.00 38.05 2.24
3345 6001 4.222145 TCCAGGAGTACAAAGTAAGCGAAT 59.778 41.667 0.00 0.00 0.00 3.34
3348 6004 3.192844 TCTCCAGGAGTACAAAGTAAGCG 59.807 47.826 16.65 0.00 0.00 4.68
3349 6005 4.749976 CTCTCCAGGAGTACAAAGTAAGC 58.250 47.826 16.65 0.00 37.30 3.09
3350 6006 4.220821 TGCTCTCCAGGAGTACAAAGTAAG 59.779 45.833 16.65 4.13 43.62 2.34
3370 6026 1.230324 GTTCTTCTTGGCGTCTTGCT 58.770 50.000 0.00 0.00 45.43 3.91
3489 6145 1.819903 ACTGAACCGTAGCTTCCTCTC 59.180 52.381 0.00 0.00 0.00 3.20
3597 6253 3.738982 TCTCAAAACCTCGCATTCTGAA 58.261 40.909 0.00 0.00 0.00 3.02
3606 6262 4.921515 TGTCGAATACTTCTCAAAACCTCG 59.078 41.667 0.00 0.00 0.00 4.63
3649 6305 8.504812 TTATCTATTGTTGAGCATGCTGTTAA 57.495 30.769 28.27 14.45 0.00 2.01
3650 6306 8.562052 CATTATCTATTGTTGAGCATGCTGTTA 58.438 33.333 28.27 8.48 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.