Multiple sequence alignment - TraesCS1A01G391700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G391700 chr1A 100.000 5173 0 0 1 5173 558542296 558537124 0.000000e+00 9553.0
1 TraesCS1A01G391700 chr1A 74.309 1592 357 45 2548 4110 526749411 526750979 1.220000e-175 627.0
2 TraesCS1A01G391700 chr1D 92.934 1486 90 7 2744 4225 466386615 466385141 0.000000e+00 2148.0
3 TraesCS1A01G391700 chr1D 87.609 1493 179 6 872 2361 466388108 466386619 0.000000e+00 1727.0
4 TraesCS1A01G391700 chr1D 89.326 712 61 11 4469 5173 466380693 466379990 0.000000e+00 880.0
5 TraesCS1A01G391700 chr1D 93.274 223 14 1 130 351 466388739 466388517 1.390000e-85 327.0
6 TraesCS1A01G391700 chr1D 81.208 149 13 4 4294 4427 466380850 466380702 7.080000e-19 106.0
7 TraesCS1A01G391700 chr1B 88.172 1674 181 11 706 2377 643119715 643118057 0.000000e+00 1978.0
8 TraesCS1A01G391700 chr1B 94.111 832 49 0 2383 3214 643115625 643114794 0.000000e+00 1266.0
9 TraesCS1A01G391700 chr1B 92.736 826 47 2 3296 4120 643114792 643113979 0.000000e+00 1181.0
10 TraesCS1A01G391700 chr1B 89.761 293 28 2 7 297 643120576 643120284 1.760000e-99 374.0
11 TraesCS1A01G391700 chr1B 87.538 329 27 3 4108 4423 643112188 643111861 8.180000e-98 368.0
12 TraesCS1A01G391700 chr1B 76.010 767 142 26 3360 4110 580523559 580524299 4.930000e-95 359.0
13 TraesCS1A01G391700 chr1B 84.175 297 33 4 404 700 643120102 643119820 5.100000e-70 276.0
14 TraesCS1A01G391700 chr1B 96.552 58 2 0 350 407 264854836 264854779 4.260000e-16 97.1
15 TraesCS1A01G391700 chr1B 95.161 62 2 1 347 407 626712894 626712833 4.260000e-16 97.1
16 TraesCS1A01G391700 chr6D 87.673 722 73 8 3542 4256 32907260 32907972 0.000000e+00 826.0
17 TraesCS1A01G391700 chr6D 94.828 58 3 0 350 407 387886074 387886017 1.980000e-14 91.6
18 TraesCS1A01G391700 chr3B 77.728 669 139 9 2921 3584 22438249 22438912 8.070000e-108 401.0
19 TraesCS1A01G391700 chr6B 77.151 372 74 6 1059 1429 705642317 705641956 6.790000e-49 206.0
20 TraesCS1A01G391700 chr6B 85.955 178 23 2 1021 1197 11742952 11743128 6.840000e-44 189.0
21 TraesCS1A01G391700 chr5A 95.082 61 3 0 347 407 375215419 375215479 4.260000e-16 97.1
22 TraesCS1A01G391700 chr4D 95.000 60 3 0 348 407 124628768 124628827 1.530000e-15 95.3
23 TraesCS1A01G391700 chr3D 95.000 60 3 0 348 407 121985626 121985567 1.530000e-15 95.3
24 TraesCS1A01G391700 chr3D 100.000 29 0 0 3812 3840 40751673 40751701 3.000000e-03 54.7
25 TraesCS1A01G391700 chrUn 93.443 61 4 0 347 407 378270655 378270595 1.980000e-14 91.6
26 TraesCS1A01G391700 chrUn 93.443 61 4 0 347 407 447954259 447954319 1.980000e-14 91.6
27 TraesCS1A01G391700 chr2B 91.176 68 5 1 340 407 740737937 740737871 1.980000e-14 91.6
28 TraesCS1A01G391700 chr2D 90.909 44 4 0 1821 1864 577796365 577796408 5.590000e-05 60.2
29 TraesCS1A01G391700 chr3A 92.308 39 3 0 3808 3846 52461192 52461154 7.240000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G391700 chr1A 558537124 558542296 5172 True 9553.000000 9553 100.000000 1 5173 1 chr1A.!!$R1 5172
1 TraesCS1A01G391700 chr1A 526749411 526750979 1568 False 627.000000 627 74.309000 2548 4110 1 chr1A.!!$F1 1562
2 TraesCS1A01G391700 chr1D 466385141 466388739 3598 True 1400.666667 2148 91.272333 130 4225 3 chr1D.!!$R2 4095
3 TraesCS1A01G391700 chr1D 466379990 466380850 860 True 493.000000 880 85.267000 4294 5173 2 chr1D.!!$R1 879
4 TraesCS1A01G391700 chr1B 643111861 643120576 8715 True 907.166667 1978 89.415500 7 4423 6 chr1B.!!$R3 4416
5 TraesCS1A01G391700 chr1B 580523559 580524299 740 False 359.000000 359 76.010000 3360 4110 1 chr1B.!!$F1 750
6 TraesCS1A01G391700 chr6D 32907260 32907972 712 False 826.000000 826 87.673000 3542 4256 1 chr6D.!!$F1 714
7 TraesCS1A01G391700 chr3B 22438249 22438912 663 False 401.000000 401 77.728000 2921 3584 1 chr3B.!!$F1 663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
209 212 0.026674 TCGTATACTGAACGACGCGG 59.973 55.000 12.47 0.00 43.90 6.46 F
1646 1873 0.103026 GGGCAATTTCCGAATCTGGC 59.897 55.000 7.60 7.60 32.91 4.85 F
1647 1874 0.817013 GGCAATTTCCGAATCTGGCA 59.183 50.000 10.13 0.00 33.39 4.92 F
2614 5267 1.066286 AGTGTCAAGAGCTGCAGATCC 60.066 52.381 27.52 13.21 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2414 0.093705 CGCTGAGCTTGTTTCTACGC 59.906 55.000 1.78 0.0 0.00 4.42 R
3117 5773 1.819903 ACTGAACCGTAGCTTCCTCTC 59.180 52.381 0.00 0.0 0.00 3.20 R
3387 6043 2.162408 GCTCAAAATCCTTGGACCTTCG 59.838 50.000 0.00 0.0 0.00 3.79 R
4312 8786 0.324943 GGCTGGGTGTGAGCTCTTAA 59.675 55.000 16.19 0.0 36.63 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.078918 CGATCTGCAGTCAGGCCAA 60.079 57.895 14.67 0.00 40.69 4.52
39 40 1.130561 GGCCAATCGTTGTAGCTGAAC 59.869 52.381 0.00 0.00 0.00 3.18
40 41 1.201921 GCCAATCGTTGTAGCTGAACG 60.202 52.381 20.84 20.84 45.98 3.95
62 64 3.757745 AAGCACATTGCCGTTACATAC 57.242 42.857 0.00 0.00 46.52 2.39
64 66 3.078097 AGCACATTGCCGTTACATACAA 58.922 40.909 0.00 0.00 46.52 2.41
73 75 4.702612 TGCCGTTACATACAAAATGATGGT 59.297 37.500 0.00 0.00 0.00 3.55
81 83 5.481473 ACATACAAAATGATGGTTCCAAGCT 59.519 36.000 0.00 0.00 0.00 3.74
97 99 8.914011 GGTTCCAAGCTAATTAATTTATGAGGT 58.086 33.333 5.91 0.35 0.00 3.85
107 109 6.740944 TTAATTTATGAGGTCTCCATCCGA 57.259 37.500 0.00 0.00 0.00 4.55
127 129 5.475909 TCCGAACAACACTAGAACTCATACT 59.524 40.000 0.00 0.00 0.00 2.12
128 130 5.573282 CCGAACAACACTAGAACTCATACTG 59.427 44.000 0.00 0.00 0.00 2.74
195 198 1.136305 CCGTTCCATGTCAGGTCGTAT 59.864 52.381 0.00 0.00 0.00 3.06
201 204 4.274978 TCCATGTCAGGTCGTATACTGAA 58.725 43.478 0.56 0.00 44.53 3.02
209 212 0.026674 TCGTATACTGAACGACGCGG 59.973 55.000 12.47 0.00 43.90 6.46
302 305 0.900182 ACGATCCTGTCCAGCTCACA 60.900 55.000 0.00 0.00 0.00 3.58
358 362 4.263435 CTGGAACGGTAACTACTCTCTCT 58.737 47.826 0.00 0.00 0.00 3.10
359 363 4.008330 TGGAACGGTAACTACTCTCTCTG 58.992 47.826 0.00 0.00 0.00 3.35
361 365 4.094739 GGAACGGTAACTACTCTCTCTGTC 59.905 50.000 0.00 0.00 0.00 3.51
363 367 2.944349 CGGTAACTACTCTCTCTGTCCC 59.056 54.545 0.00 0.00 0.00 4.46
364 368 3.621709 CGGTAACTACTCTCTCTGTCCCA 60.622 52.174 0.00 0.00 0.00 4.37
365 369 4.538738 GGTAACTACTCTCTCTGTCCCAT 58.461 47.826 0.00 0.00 0.00 4.00
374 378 9.967451 CTACTCTCTCTGTCCCATAATATAAGA 57.033 37.037 0.00 0.00 0.00 2.10
375 379 8.877864 ACTCTCTCTGTCCCATAATATAAGAG 57.122 38.462 0.00 0.00 33.36 2.85
376 380 7.396055 ACTCTCTCTGTCCCATAATATAAGAGC 59.604 40.741 0.00 0.00 31.76 4.09
377 381 6.375736 TCTCTCTGTCCCATAATATAAGAGCG 59.624 42.308 0.00 0.00 31.76 5.03
379 383 6.493802 TCTCTGTCCCATAATATAAGAGCGTT 59.506 38.462 0.00 0.00 31.76 4.84
381 385 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
382 386 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
384 388 9.616156 TGTCCCATAATATAAGAGCGTTTTTAA 57.384 29.630 0.00 0.00 0.00 1.52
385 389 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
386 390 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
387 391 9.659830 CCCATAATATAAGAGCGTTTTTAACAC 57.340 33.333 0.00 0.00 0.00 3.32
392 396 4.385244 AAGAGCGTTTTTAACACTAGCG 57.615 40.909 0.00 0.00 0.00 4.26
393 397 3.387397 AGAGCGTTTTTAACACTAGCGT 58.613 40.909 0.00 0.00 0.00 5.07
395 399 4.620184 AGAGCGTTTTTAACACTAGCGTAG 59.380 41.667 0.00 0.00 0.00 3.51
436 538 1.502231 CTGACAAGGTTGACGGACTG 58.498 55.000 0.00 0.00 32.21 3.51
439 541 1.002087 GACAAGGTTGACGGACTGGAT 59.998 52.381 0.00 0.00 0.00 3.41
458 560 3.501349 GATACAGGTCCTCAGCTCCATA 58.499 50.000 0.00 0.00 0.00 2.74
459 561 1.786937 ACAGGTCCTCAGCTCCATAG 58.213 55.000 0.00 0.00 0.00 2.23
472 574 2.158900 GCTCCATAGCCAGTCAAGCTTA 60.159 50.000 0.00 0.00 43.40 3.09
480 582 5.683876 AGCCAGTCAAGCTTAAGATAAGA 57.316 39.130 6.67 0.00 37.24 2.10
482 584 5.046304 AGCCAGTCAAGCTTAAGATAAGACA 60.046 40.000 21.15 0.00 37.24 3.41
488 591 7.124901 AGTCAAGCTTAAGATAAGACATGAGGA 59.875 37.037 21.15 0.00 0.00 3.71
492 595 8.900983 AGCTTAAGATAAGACATGAGGATTTC 57.099 34.615 6.67 0.00 0.00 2.17
493 596 8.713036 AGCTTAAGATAAGACATGAGGATTTCT 58.287 33.333 6.67 0.00 0.00 2.52
500 603 4.099633 AGACATGAGGATTTCTGACCAGA 58.900 43.478 0.00 0.00 35.27 3.86
517 620 1.207593 GATGCAAGTGTGTGGACGC 59.792 57.895 0.00 0.00 0.00 5.19
613 716 1.398390 CGCTTTATTCCCAGCTCACAC 59.602 52.381 0.00 0.00 33.52 3.82
623 726 0.887836 CAGCTCACACACCACAGCAT 60.888 55.000 0.00 0.00 34.08 3.79
643 750 1.938625 AACCATGCAACAGCAACAAC 58.061 45.000 0.00 0.00 42.37 3.32
671 778 3.554692 GTTCTGTGCGATCCGGCG 61.555 66.667 0.00 0.00 35.06 6.46
672 779 4.063967 TTCTGTGCGATCCGGCGT 62.064 61.111 6.01 0.00 35.06 5.68
700 809 2.041405 CCCCACTCCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
701 810 2.041405 CCCACTCCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
703 812 1.297409 CCCACTCCCTCCTCCTCCTA 61.297 65.000 0.00 0.00 0.00 2.94
715 923 2.482142 CCTCCTCCTAATTGCTGTCGAC 60.482 54.545 9.11 9.11 0.00 4.20
729 937 3.803555 CTGTCGACTTTGTCTCAATTGC 58.196 45.455 17.92 0.00 0.00 3.56
841 1068 3.070018 CTGTCCACATGAGTTCTCAACC 58.930 50.000 0.00 0.00 0.00 3.77
843 1070 3.136443 TGTCCACATGAGTTCTCAACCTT 59.864 43.478 0.00 0.00 0.00 3.50
904 1131 1.416401 GAGAAGGGTCACACAGTCCAA 59.584 52.381 0.00 0.00 0.00 3.53
930 1157 4.407621 CCATAGGTGAACATACTACCCACA 59.592 45.833 0.00 0.00 35.03 4.17
1009 1236 0.461548 GAGACGCACCATGATCCTGA 59.538 55.000 0.00 0.00 0.00 3.86
1018 1245 1.004044 CCATGATCCTGATACTGGCCC 59.996 57.143 0.00 0.00 0.00 5.80
1024 1251 1.147824 CTGATACTGGCCCTGCTGG 59.852 63.158 0.00 1.89 37.09 4.85
1099 1326 1.536922 CGGACATGCTCTCGTTGCTAT 60.537 52.381 0.00 0.00 0.00 2.97
1136 1363 0.110486 ACCAACGATCCAAGGCAAGT 59.890 50.000 0.00 0.00 0.00 3.16
1164 1391 4.776322 TGGAACGCCAGCATCCCG 62.776 66.667 8.51 0.00 39.92 5.14
1182 1409 2.353610 GCATTGCAAGTGGGAGGGG 61.354 63.158 4.94 0.00 0.00 4.79
1200 1427 1.227943 GGTCAACTGCAGCCTCACA 60.228 57.895 15.27 0.00 0.00 3.58
1213 1440 3.157949 TCACACACCCAGGTCGCA 61.158 61.111 0.00 0.00 0.00 5.10
1218 1445 2.815211 CACCCAGGTCGCATCACG 60.815 66.667 0.00 0.00 45.62 4.35
1220 1447 3.770040 CCCAGGTCGCATCACGGA 61.770 66.667 0.00 0.00 43.89 4.69
1224 1451 2.887568 GGTCGCATCACGGAGCTG 60.888 66.667 0.00 0.00 43.89 4.24
1230 1457 0.674895 GCATCACGGAGCTGAACCTT 60.675 55.000 0.00 0.00 0.00 3.50
1231 1458 1.081892 CATCACGGAGCTGAACCTTG 58.918 55.000 0.00 0.00 0.00 3.61
1252 1479 0.951040 CGAGCAAGGGTTGTCAGGTC 60.951 60.000 0.00 0.00 0.00 3.85
1302 1529 2.897969 GTTCCTTGAGACACTGGACCTA 59.102 50.000 0.00 0.00 0.00 3.08
1320 1547 5.396884 GGACCTATCCACAAATAGCTTCACT 60.397 44.000 0.00 0.00 45.47 3.41
1327 1554 2.289694 ACAAATAGCTTCACTGGCGAGT 60.290 45.455 0.00 0.00 34.52 4.18
1335 1562 0.541063 TCACTGGCGAGTTACCTCCA 60.541 55.000 0.00 0.00 33.93 3.86
1339 1566 0.541063 TGGCGAGTTACCTCCACTCA 60.541 55.000 1.29 0.00 40.78 3.41
1340 1567 0.606604 GGCGAGTTACCTCCACTCAA 59.393 55.000 1.29 0.00 40.78 3.02
1341 1568 1.672145 GGCGAGTTACCTCCACTCAAC 60.672 57.143 1.29 0.00 40.78 3.18
1342 1569 1.000506 GCGAGTTACCTCCACTCAACA 59.999 52.381 1.29 0.00 40.78 3.33
1350 1577 1.905215 CCTCCACTCAACAGTCTCCAT 59.095 52.381 0.00 0.00 0.00 3.41
1367 1594 6.317789 TCTCCATAGACTGCAAAAACTTTG 57.682 37.500 0.00 0.00 0.00 2.77
1375 1602 2.861935 CTGCAAAAACTTTGGCTGAGTG 59.138 45.455 3.34 0.00 38.03 3.51
1404 1631 0.396139 TGCAAGGGATCATTCCAGCC 60.396 55.000 0.00 0.00 44.60 4.85
1417 1644 5.565509 TCATTCCAGCCACACTTACAAATA 58.434 37.500 0.00 0.00 0.00 1.40
1460 1687 9.707957 CTTATATCTATCTGGTAACTCCCTGAT 57.292 37.037 0.00 0.00 43.28 2.90
1470 1697 5.130477 TGGTAACTCCCTGATAGGTGAAATC 59.870 44.000 0.00 0.00 32.16 2.17
1473 1700 2.373502 CTCCCTGATAGGTGAAATCCCC 59.626 54.545 0.00 0.00 31.93 4.81
1476 1703 2.785857 CCTGATAGGTGAAATCCCCCTT 59.214 50.000 0.00 0.00 0.00 3.95
1491 1718 3.987501 TCCCCCTTAATATAGGCTTGCTT 59.012 43.478 0.00 0.00 33.73 3.91
1497 1724 6.323739 CCCTTAATATAGGCTTGCTTTCCAAA 59.676 38.462 0.00 0.00 33.73 3.28
1503 1730 8.710749 ATATAGGCTTGCTTTCCAAATTATCA 57.289 30.769 0.00 0.00 31.94 2.15
1504 1731 5.334724 AGGCTTGCTTTCCAAATTATCAG 57.665 39.130 0.00 0.00 31.94 2.90
1505 1732 5.018809 AGGCTTGCTTTCCAAATTATCAGA 58.981 37.500 0.00 0.00 31.94 3.27
1506 1733 5.481473 AGGCTTGCTTTCCAAATTATCAGAA 59.519 36.000 0.00 0.00 31.94 3.02
1513 1740 9.241919 TGCTTTCCAAATTATCAGAATTACAGA 57.758 29.630 0.00 0.00 0.00 3.41
1528 1755 9.173939 CAGAATTACAGATTGCCGAAAATAATC 57.826 33.333 0.00 0.00 0.00 1.75
1618 1845 4.037222 TCAACTCATGGGTAGCATTCCTA 58.963 43.478 0.00 0.00 0.00 2.94
1629 1856 5.104735 GGGTAGCATTCCTAATGAGATAGGG 60.105 48.000 3.86 0.00 42.37 3.53
1638 1865 4.697352 CCTAATGAGATAGGGCAATTTCCG 59.303 45.833 0.00 0.00 39.07 4.30
1640 1867 3.924114 TGAGATAGGGCAATTTCCGAA 57.076 42.857 0.00 0.00 0.00 4.30
1645 1872 1.767759 AGGGCAATTTCCGAATCTGG 58.232 50.000 0.00 0.00 0.00 3.86
1646 1873 0.103026 GGGCAATTTCCGAATCTGGC 59.897 55.000 7.60 7.60 32.91 4.85
1647 1874 0.817013 GGCAATTTCCGAATCTGGCA 59.183 50.000 10.13 0.00 33.39 4.92
1649 1876 1.474077 GCAATTTCCGAATCTGGCAGT 59.526 47.619 15.27 0.00 0.00 4.40
1653 1880 5.708948 CAATTTCCGAATCTGGCAGTTTTA 58.291 37.500 15.27 0.00 0.00 1.52
1667 1894 6.249951 TGGCAGTTTTATTACTTGGTGGTAT 58.750 36.000 0.00 0.00 0.00 2.73
1670 1897 8.186163 GGCAGTTTTATTACTTGGTGGTATTAC 58.814 37.037 0.00 0.00 0.00 1.89
1671 1898 8.186163 GCAGTTTTATTACTTGGTGGTATTACC 58.814 37.037 5.87 5.87 41.24 2.85
1683 1910 5.102956 TGGTGGTATTACCCTATCAGGTAGT 60.103 44.000 10.37 0.00 43.24 2.73
1696 1923 3.798515 TCAGGTAGTATCCCAACAACCT 58.201 45.455 0.00 0.00 37.84 3.50
1704 1931 5.580022 AGTATCCCAACAACCTTGCTTAAT 58.420 37.500 0.00 0.00 0.00 1.40
1707 1934 4.219115 TCCCAACAACCTTGCTTAATCAA 58.781 39.130 0.00 0.00 0.00 2.57
1716 1943 8.680903 ACAACCTTGCTTAATCAATCTTATCTG 58.319 33.333 0.00 0.00 0.00 2.90
1785 2012 2.729028 ATTTTGGTGATACCCTCCCG 57.271 50.000 0.00 0.00 37.50 5.14
1796 2023 4.598894 CCTCCCGAGGCTCGCATG 62.599 72.222 30.55 19.96 42.44 4.06
1803 2030 3.709633 AGGCTCGCATGGCTCACA 61.710 61.111 0.00 0.00 38.54 3.58
1817 2044 5.172687 TGGCTCACATTGGACTATAACAA 57.827 39.130 0.00 0.00 0.00 2.83
1818 2045 5.565509 TGGCTCACATTGGACTATAACAAA 58.434 37.500 0.00 0.00 0.00 2.83
1830 2057 8.106247 TGGACTATAACAAATTTGAAGGTCAC 57.894 34.615 24.64 15.44 0.00 3.67
1853 2080 3.507411 TCCCAGCTTCGCTAGGTAATAT 58.493 45.455 0.50 0.00 38.54 1.28
1883 2110 6.006449 GGCTATCAACATTGGACCTATCATT 58.994 40.000 0.00 0.00 0.00 2.57
1898 2125 6.624423 ACCTATCATTCAACAAATTGACAGC 58.376 36.000 0.00 0.00 44.66 4.40
1939 2166 2.161609 GGTAGGCTTGGAATGTTGAACG 59.838 50.000 0.00 0.00 0.00 3.95
2004 2231 3.870538 AGCTGGGAATTCATAGATGCA 57.129 42.857 7.93 0.00 0.00 3.96
2067 2294 7.769044 GGTCAAAATCAGTTACAAGGAGCTATA 59.231 37.037 0.00 0.00 0.00 1.31
2072 2299 6.614694 TCAGTTACAAGGAGCTATACCAAA 57.385 37.500 0.00 0.00 0.00 3.28
2077 2304 7.770897 AGTTACAAGGAGCTATACCAAATTCTG 59.229 37.037 0.00 0.00 0.00 3.02
2080 2307 7.630082 ACAAGGAGCTATACCAAATTCTGTTA 58.370 34.615 0.00 0.00 0.00 2.41
2082 2309 6.292150 AGGAGCTATACCAAATTCTGTTAGC 58.708 40.000 0.00 0.00 0.00 3.09
2104 2331 4.493547 CAACCTGTCAAGCAAACTTCAAA 58.506 39.130 0.00 0.00 32.29 2.69
2105 2332 5.111293 CAACCTGTCAAGCAAACTTCAAAT 58.889 37.500 0.00 0.00 32.29 2.32
2110 2337 7.284489 ACCTGTCAAGCAAACTTCAAATACTAA 59.716 33.333 0.00 0.00 32.29 2.24
2111 2338 7.591426 CCTGTCAAGCAAACTTCAAATACTAAC 59.409 37.037 0.00 0.00 32.29 2.34
2176 2403 4.229582 TGGGGAATCTTAGTGGCTTAACAT 59.770 41.667 0.00 0.00 0.00 2.71
2182 2409 9.609346 GGAATCTTAGTGGCTTAACATTACTAA 57.391 33.333 0.00 0.00 34.00 2.24
2204 2431 2.802816 ACTTGCGTAGAAACAAGCTCAG 59.197 45.455 2.80 0.00 45.74 3.35
2245 2472 5.243730 TGGGTTGGAAAGCTGAAAAATCTAG 59.756 40.000 0.00 0.00 45.30 2.43
2248 2475 6.215845 GTTGGAAAGCTGAAAAATCTAGCAA 58.784 36.000 0.00 0.00 39.84 3.91
2308 2535 9.976511 CAATACCAAACTCTATCGGTAATCTTA 57.023 33.333 0.00 0.00 37.53 2.10
2371 2598 2.595238 GTCCGATACCCTCCAGTATGT 58.405 52.381 0.00 0.00 33.05 2.29
2377 2604 4.099573 CGATACCCTCCAGTATGTGAAACT 59.900 45.833 0.00 0.00 38.04 2.66
2379 2606 4.287766 ACCCTCCAGTATGTGAAACTTC 57.712 45.455 0.00 0.00 38.04 3.01
2393 5046 3.316029 TGAAACTTCACCATGCTCACAAG 59.684 43.478 0.00 0.00 31.01 3.16
2401 5054 1.270550 CCATGCTCACAAGGTTGAACC 59.729 52.381 6.16 6.16 38.99 3.62
2437 5090 4.553678 TCTACAGGGTAACATTCCTAGGG 58.446 47.826 9.46 0.00 39.74 3.53
2490 5143 9.231297 ACCATATGTGCATTATCCTACAATAAC 57.769 33.333 1.24 0.00 0.00 1.89
2581 5234 5.711698 ACAAACTTTCTGGGGAAATTCCTA 58.288 37.500 12.28 0.88 40.19 2.94
2614 5267 1.066286 AGTGTCAAGAGCTGCAGATCC 60.066 52.381 27.52 13.21 0.00 3.36
2643 5296 3.455910 TGGACCAGAATATTCTCACAGGG 59.544 47.826 15.24 14.70 34.74 4.45
2707 5360 5.909610 GTGCTCAACTTTTCACATAACAGTC 59.090 40.000 0.00 0.00 0.00 3.51
2712 5365 7.047891 TCAACTTTTCACATAACAGTCTGTCT 58.952 34.615 5.82 0.00 0.00 3.41
2822 5475 8.149631 AGAAATGGGGTATTTGAAAATGTCAT 57.850 30.769 0.00 0.00 39.06 3.06
2846 5499 3.311048 GCTGTTTCTCTCGATGGGAATTC 59.689 47.826 0.00 0.00 0.00 2.17
2939 5592 6.600032 AGACTGTACTACTTGGTCAGAGTATG 59.400 42.308 0.00 0.00 0.00 2.39
2973 5626 4.729227 TGGCTTCACATCACTCGTATTA 57.271 40.909 0.00 0.00 0.00 0.98
2976 5629 5.753438 TGGCTTCACATCACTCGTATTATTC 59.247 40.000 0.00 0.00 0.00 1.75
3117 5773 1.142870 TCTGAGTCAAACCTGGTTGGG 59.857 52.381 13.79 8.92 41.11 4.12
3225 5881 6.204688 TGAGATACGCAGACAAAAGTTTCATT 59.795 34.615 0.00 0.00 0.00 2.57
3234 5890 7.561556 CAGACAAAAGTTTCATTTCAGAATGC 58.438 34.615 0.00 0.00 41.94 3.56
3277 5933 7.258441 TCGACATCGAAATCTTGTTTCTATCT 58.742 34.615 0.51 0.00 46.30 1.98
3288 5944 7.076842 TCTTGTTTCTATCTTAACAGCATGC 57.923 36.000 10.51 10.51 42.53 4.06
3387 6043 3.308530 GTTACACACAAAATCTGCTGGC 58.691 45.455 0.00 0.00 0.00 4.85
3460 6116 1.789078 CGCTGATGCATTGGCCTACC 61.789 60.000 3.32 0.00 40.13 3.18
3827 6494 4.587262 GGGGACATTTACAGTTTTGGAGTT 59.413 41.667 0.00 0.00 0.00 3.01
3850 6518 7.559533 AGTTGTTCTTCTAGAGATGCTGATAGA 59.440 37.037 0.00 0.00 33.49 1.98
3872 6540 6.206042 AGATAAGAGACCAACAGACCCTATT 58.794 40.000 0.00 0.00 0.00 1.73
4185 8656 4.573900 ACTAGAGTGATTTGGCAAGTGAG 58.426 43.478 0.00 0.00 0.00 3.51
4301 8775 3.243737 TGACTATTAATGCCGCATCGAGT 60.244 43.478 6.27 7.60 0.00 4.18
4303 8777 2.533266 ATTAATGCCGCATCGAGTCT 57.467 45.000 6.27 0.00 0.00 3.24
4311 8785 2.287668 GCCGCATCGAGTCTATACAACT 60.288 50.000 0.00 0.00 0.00 3.16
4312 8786 3.795826 GCCGCATCGAGTCTATACAACTT 60.796 47.826 0.00 0.00 0.00 2.66
4319 8793 7.096394 GCATCGAGTCTATACAACTTTAAGAGC 60.096 40.741 0.00 0.00 0.00 4.09
4356 8830 9.273016 CCTCTATAAATCGTGTTGGTATGAATT 57.727 33.333 0.00 0.00 0.00 2.17
4387 8875 1.742831 GCCATGAGTAAAATGCGGACA 59.257 47.619 0.00 0.00 0.00 4.02
4394 8883 4.083537 TGAGTAAAATGCGGACATTGACAC 60.084 41.667 0.00 0.00 45.90 3.67
4399 8888 5.581126 AAATGCGGACATTGACACAATAT 57.419 34.783 0.00 0.00 45.90 1.28
4411 8900 9.618890 ACATTGACACAATATTCTGCTATTAGT 57.381 29.630 0.00 0.00 0.00 2.24
4424 8913 7.640597 TCTGCTATTAGTACAACTAGCAAGA 57.359 36.000 18.11 15.18 44.19 3.02
4427 8916 7.837863 TGCTATTAGTACAACTAGCAAGACTT 58.162 34.615 16.30 0.00 42.51 3.01
4428 8917 7.759886 TGCTATTAGTACAACTAGCAAGACTTG 59.240 37.037 11.02 11.02 42.51 3.16
4437 8926 3.630204 CAAGACTTGCGTCGCACT 58.370 55.556 21.61 11.43 44.93 4.40
4438 8927 1.934463 CAAGACTTGCGTCGCACTT 59.066 52.632 21.61 17.05 44.93 3.16
4439 8928 0.304705 CAAGACTTGCGTCGCACTTT 59.695 50.000 21.61 6.77 44.93 2.66
4440 8929 0.582005 AAGACTTGCGTCGCACTTTC 59.418 50.000 21.61 15.77 44.93 2.62
4441 8930 0.529773 AGACTTGCGTCGCACTTTCA 60.530 50.000 21.61 3.56 44.93 2.69
4442 8931 0.303493 GACTTGCGTCGCACTTTCAA 59.697 50.000 21.61 2.72 38.71 2.69
4443 8932 0.304705 ACTTGCGTCGCACTTTCAAG 59.695 50.000 21.61 15.81 38.71 3.02
4444 8933 0.581529 CTTGCGTCGCACTTTCAAGA 59.418 50.000 21.61 1.05 38.71 3.02
4445 8934 0.581529 TTGCGTCGCACTTTCAAGAG 59.418 50.000 21.61 0.00 38.71 2.85
4446 8935 0.529773 TGCGTCGCACTTTCAAGAGT 60.530 50.000 17.58 0.00 31.71 3.24
4447 8936 0.582005 GCGTCGCACTTTCAAGAGTT 59.418 50.000 13.44 0.00 0.00 3.01
4448 8937 1.657538 GCGTCGCACTTTCAAGAGTTG 60.658 52.381 13.44 0.00 0.00 3.16
4449 8938 1.858458 CGTCGCACTTTCAAGAGTTGA 59.142 47.619 0.00 0.00 38.04 3.18
4450 8939 2.097202 CGTCGCACTTTCAAGAGTTGAG 60.097 50.000 0.00 0.00 41.38 3.02
4451 8940 3.123804 GTCGCACTTTCAAGAGTTGAGA 58.876 45.455 0.00 0.00 41.38 3.27
4452 8941 3.183373 GTCGCACTTTCAAGAGTTGAGAG 59.817 47.826 5.82 5.82 44.81 3.20
4453 8942 2.478134 CGCACTTTCAAGAGTTGAGAGG 59.522 50.000 10.84 3.10 43.89 3.69
4454 8943 3.733337 GCACTTTCAAGAGTTGAGAGGA 58.267 45.455 10.84 0.00 43.89 3.71
4455 8944 4.322567 GCACTTTCAAGAGTTGAGAGGAT 58.677 43.478 10.84 0.00 43.89 3.24
4456 8945 4.153835 GCACTTTCAAGAGTTGAGAGGATG 59.846 45.833 10.84 3.81 43.89 3.51
4457 8946 4.153835 CACTTTCAAGAGTTGAGAGGATGC 59.846 45.833 10.84 0.00 43.89 3.91
4458 8947 4.041444 ACTTTCAAGAGTTGAGAGGATGCT 59.959 41.667 10.84 0.00 43.89 3.79
4459 8948 5.247110 ACTTTCAAGAGTTGAGAGGATGCTA 59.753 40.000 10.84 0.00 43.89 3.49
4460 8949 5.946942 TTCAAGAGTTGAGAGGATGCTAT 57.053 39.130 0.00 0.00 41.38 2.97
4461 8950 5.946942 TCAAGAGTTGAGAGGATGCTATT 57.053 39.130 0.00 0.00 34.08 1.73
4462 8951 5.668471 TCAAGAGTTGAGAGGATGCTATTG 58.332 41.667 0.00 0.00 34.08 1.90
4463 8952 4.070630 AGAGTTGAGAGGATGCTATTGC 57.929 45.455 0.00 0.00 40.20 3.56
4464 8953 3.710677 AGAGTTGAGAGGATGCTATTGCT 59.289 43.478 0.00 0.00 40.48 3.91
4465 8954 4.898265 AGAGTTGAGAGGATGCTATTGCTA 59.102 41.667 0.00 0.00 40.48 3.49
4466 8955 4.954875 AGTTGAGAGGATGCTATTGCTAC 58.045 43.478 0.00 0.00 40.48 3.58
4467 8956 4.406972 AGTTGAGAGGATGCTATTGCTACA 59.593 41.667 0.00 0.00 40.48 2.74
4474 8963 4.594920 AGGATGCTATTGCTACATACTGGT 59.405 41.667 0.00 0.00 33.64 4.00
4476 8965 6.071108 AGGATGCTATTGCTACATACTGGTAG 60.071 42.308 0.00 0.00 42.88 3.18
4490 8979 4.199432 ACTGGTAGCTCTCATGAAGTTG 57.801 45.455 0.00 0.00 0.00 3.16
4516 9005 2.000803 TCTACTTCAGGACTGGGAGGA 58.999 52.381 0.00 0.00 0.00 3.71
4526 9015 1.275291 GACTGGGAGGACGATTTGACA 59.725 52.381 0.00 0.00 0.00 3.58
4531 9020 2.742589 GGGAGGACGATTTGACAGAAAC 59.257 50.000 0.00 0.00 0.00 2.78
4565 9054 7.601856 TGGAACAATCATCACAGGAAATAAAC 58.398 34.615 0.00 0.00 31.92 2.01
4567 9056 8.253113 GGAACAATCATCACAGGAAATAAACAT 58.747 33.333 0.00 0.00 0.00 2.71
4596 9085 8.909708 TTTACAGCACTGAAATATATTTGTGC 57.090 30.769 29.04 29.04 43.88 4.57
4597 9086 5.894807 ACAGCACTGAAATATATTTGTGCC 58.105 37.500 30.75 20.83 44.26 5.01
4598 9087 5.418524 ACAGCACTGAAATATATTTGTGCCA 59.581 36.000 30.75 17.55 44.26 4.92
4602 9091 8.137437 AGCACTGAAATATATTTGTGCCAATAC 58.863 33.333 30.75 15.49 44.26 1.89
4621 9110 7.575720 GCCAATACTTCTTGAAAGCAATACACT 60.576 37.037 0.00 0.00 32.68 3.55
4622 9111 8.946085 CCAATACTTCTTGAAAGCAATACACTA 58.054 33.333 0.00 0.00 32.68 2.74
4623 9112 9.979270 CAATACTTCTTGAAAGCAATACACTAG 57.021 33.333 0.00 0.00 32.68 2.57
4637 9126 8.914011 AGCAATACACTAGAAAAAGAAACCTTT 58.086 29.630 0.00 0.00 35.52 3.11
4661 9150 6.704289 AACAATGCACAGCACATCTATATT 57.296 33.333 0.00 0.00 43.04 1.28
4688 9177 6.116806 TGTTTTACAAACTAAGCAGGACAGA 58.883 36.000 1.33 0.00 0.00 3.41
4689 9178 6.600032 TGTTTTACAAACTAAGCAGGACAGAA 59.400 34.615 1.33 0.00 0.00 3.02
4691 9180 6.861065 TTACAAACTAAGCAGGACAGAAAG 57.139 37.500 0.00 0.00 0.00 2.62
4693 9182 3.425162 AACTAAGCAGGACAGAAAGGG 57.575 47.619 0.00 0.00 0.00 3.95
4701 9190 2.441001 CAGGACAGAAAGGGAGCCATAT 59.559 50.000 0.00 0.00 0.00 1.78
4705 9194 4.838986 GGACAGAAAGGGAGCCATATACTA 59.161 45.833 0.00 0.00 0.00 1.82
4708 9197 7.394144 ACAGAAAGGGAGCCATATACTATTT 57.606 36.000 0.00 0.00 0.00 1.40
4713 9202 9.660180 GAAAGGGAGCCATATACTATTTAAGAG 57.340 37.037 0.00 0.00 0.00 2.85
4717 9206 7.386851 GGAGCCATATACTATTTAAGAGCACA 58.613 38.462 0.00 0.00 0.00 4.57
4741 9230 7.917505 ACAAAAACAGAAATGAGCAGAAACTAG 59.082 33.333 0.00 0.00 0.00 2.57
4743 9232 4.645535 ACAGAAATGAGCAGAAACTAGCA 58.354 39.130 0.00 0.00 0.00 3.49
4746 9235 2.035530 ATGAGCAGAAACTAGCAGCC 57.964 50.000 0.00 0.00 0.00 4.85
4753 9242 1.282157 AGAAACTAGCAGCCCCGAAAT 59.718 47.619 0.00 0.00 0.00 2.17
4766 9255 3.758554 GCCCCGAAATATTGCAGATACAT 59.241 43.478 0.00 0.00 0.00 2.29
4793 9282 7.944729 ATGAAAATTACCAGTGAGCATAACT 57.055 32.000 0.00 0.00 0.00 2.24
4802 9291 4.607293 AGTGAGCATAACTGAACACAGA 57.393 40.909 0.00 0.00 34.61 3.41
4804 9293 5.555017 AGTGAGCATAACTGAACACAGAAT 58.445 37.500 0.00 0.00 34.61 2.40
4822 9311 1.600058 ATCTTCCTGAATCCTGGCCA 58.400 50.000 4.71 4.71 0.00 5.36
4859 9348 1.409790 AGCATGAGCAAAACACAAGCA 59.590 42.857 0.00 0.00 45.49 3.91
4870 9359 5.510671 CAAAACACAAGCACTAACTACCTG 58.489 41.667 0.00 0.00 0.00 4.00
4920 9409 4.466567 TGAAGTTTCAGCATGTTACACG 57.533 40.909 0.00 0.00 37.40 4.49
4931 9420 1.598882 TGTTACACGCCAAGCATGAA 58.401 45.000 0.00 0.00 0.00 2.57
4940 9429 1.129811 GCCAAGCATGAAAATTGCAGC 59.870 47.619 0.00 0.00 42.62 5.25
4943 9432 0.108520 AGCATGAAAATTGCAGCCCG 60.109 50.000 0.00 0.00 42.62 6.13
4944 9433 1.085501 GCATGAAAATTGCAGCCCGG 61.086 55.000 0.00 0.00 39.90 5.73
4977 9468 7.497249 ACCAGAAATGTCTTATCACTATGCTTC 59.503 37.037 0.00 0.00 28.78 3.86
5023 9518 5.470047 TGAGTTCACCTTTTCCTCTACTC 57.530 43.478 0.00 0.00 33.25 2.59
5033 9528 6.155393 ACCTTTTCCTCTACTCTAACATCCTG 59.845 42.308 0.00 0.00 0.00 3.86
5053 9548 4.178540 CTGATTACTGGGCAATGCAAAAG 58.821 43.478 7.79 3.48 0.00 2.27
5088 9583 5.825593 AAGGTGATCTCAAGGTCTTTACA 57.174 39.130 0.00 0.00 0.00 2.41
5114 9609 8.651589 TCTTATGAGTTATATCCGGAGAACAT 57.348 34.615 21.96 15.57 0.00 2.71
5119 9614 7.561251 TGAGTTATATCCGGAGAACATTTCAA 58.439 34.615 21.96 1.44 0.00 2.69
5124 9619 9.627123 TTATATCCGGAGAACATTTCAAGATTT 57.373 29.630 11.34 0.00 0.00 2.17
5126 9621 7.938140 ATCCGGAGAACATTTCAAGATTTTA 57.062 32.000 11.34 0.00 0.00 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.336440 CCTGACTGCAGATCGTAGGAG 59.664 57.143 23.35 7.09 45.17 3.69
1 2 1.393603 CCTGACTGCAGATCGTAGGA 58.606 55.000 23.35 0.00 45.17 2.94
2 3 0.249238 GCCTGACTGCAGATCGTAGG 60.249 60.000 23.35 18.85 45.17 3.18
3 4 0.249238 GGCCTGACTGCAGATCGTAG 60.249 60.000 23.35 10.18 45.17 3.51
4 5 0.970427 TGGCCTGACTGCAGATCGTA 60.970 55.000 23.35 0.32 45.17 3.43
5 6 1.830587 TTGGCCTGACTGCAGATCGT 61.831 55.000 23.35 0.00 45.17 3.73
12 13 1.237285 ACAACGATTGGCCTGACTGC 61.237 55.000 3.32 0.00 34.12 4.40
39 40 1.069568 TGTAACGGCAATGTGCTTTCG 60.070 47.619 0.00 0.00 44.28 3.46
40 41 2.697431 TGTAACGGCAATGTGCTTTC 57.303 45.000 0.00 0.00 44.28 2.62
44 46 3.479505 TTGTATGTAACGGCAATGTGC 57.520 42.857 0.00 0.00 44.08 4.57
62 64 9.603921 ATTAATTAGCTTGGAACCATCATTTTG 57.396 29.630 0.00 0.00 0.00 2.44
73 75 9.920946 AGACCTCATAAATTAATTAGCTTGGAA 57.079 29.630 0.01 0.00 0.00 3.53
81 83 8.876181 TCGGATGGAGACCTCATAAATTAATTA 58.124 33.333 0.01 0.00 0.00 1.40
90 92 3.026707 TGTTCGGATGGAGACCTCATA 57.973 47.619 0.00 0.00 0.00 2.15
97 99 3.427573 TCTAGTGTTGTTCGGATGGAGA 58.572 45.455 0.00 0.00 0.00 3.71
107 109 5.542635 TCCCAGTATGAGTTCTAGTGTTGTT 59.457 40.000 0.00 0.00 39.69 2.83
148 151 6.267699 TCACTGGTCTAACATTCTCTTCTTCA 59.732 38.462 0.00 0.00 0.00 3.02
195 198 0.376152 GATCTCCGCGTCGTTCAGTA 59.624 55.000 4.92 0.00 0.00 2.74
201 204 1.707239 GAGAGTGATCTCCGCGTCGT 61.707 60.000 4.92 0.00 41.26 4.34
209 212 5.385198 AGGAACTGGATAGAGAGTGATCTC 58.615 45.833 0.00 0.00 37.18 2.75
359 363 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
361 365 9.659830 GTGTTAAAAACGCTCTTATATTATGGG 57.340 33.333 0.00 0.00 38.81 4.00
375 379 4.635961 ACTACGCTAGTGTTAAAAACGC 57.364 40.909 15.28 0.00 42.10 4.84
386 390 4.870363 TCCGTTTTTAACACTACGCTAGT 58.130 39.130 0.00 0.00 40.28 2.57
387 391 4.325472 CCTCCGTTTTTAACACTACGCTAG 59.675 45.833 0.00 0.00 32.97 3.42
389 393 3.062042 CCTCCGTTTTTAACACTACGCT 58.938 45.455 0.00 0.00 32.97 5.07
390 394 2.158254 CCCTCCGTTTTTAACACTACGC 59.842 50.000 0.00 0.00 32.97 4.42
391 395 3.652274 TCCCTCCGTTTTTAACACTACG 58.348 45.455 0.00 0.00 0.00 3.51
392 396 4.635223 ACTCCCTCCGTTTTTAACACTAC 58.365 43.478 0.00 0.00 0.00 2.73
393 397 4.961438 ACTCCCTCCGTTTTTAACACTA 57.039 40.909 0.00 0.00 0.00 2.74
395 399 3.434641 GCTACTCCCTCCGTTTTTAACAC 59.565 47.826 0.00 0.00 0.00 3.32
398 402 3.579586 TCAGCTACTCCCTCCGTTTTTAA 59.420 43.478 0.00 0.00 0.00 1.52
399 403 3.056322 GTCAGCTACTCCCTCCGTTTTTA 60.056 47.826 0.00 0.00 0.00 1.52
400 404 1.975680 TCAGCTACTCCCTCCGTTTTT 59.024 47.619 0.00 0.00 0.00 1.94
402 406 0.896226 GTCAGCTACTCCCTCCGTTT 59.104 55.000 0.00 0.00 0.00 3.60
436 538 1.044611 GGAGCTGAGGACCTGTATCC 58.955 60.000 0.00 0.00 39.28 2.59
439 541 2.950781 CTATGGAGCTGAGGACCTGTA 58.049 52.381 0.00 0.00 0.00 2.74
458 560 5.046304 TGTCTTATCTTAAGCTTGACTGGCT 60.046 40.000 9.86 0.00 42.31 4.75
459 561 5.178797 TGTCTTATCTTAAGCTTGACTGGC 58.821 41.667 9.86 0.00 0.00 4.85
460 562 7.044181 TCATGTCTTATCTTAAGCTTGACTGG 58.956 38.462 9.86 3.15 0.00 4.00
462 564 7.124901 TCCTCATGTCTTATCTTAAGCTTGACT 59.875 37.037 9.86 0.00 0.00 3.41
472 574 7.092712 TGGTCAGAAATCCTCATGTCTTATCTT 60.093 37.037 0.00 0.00 0.00 2.40
480 582 4.778579 CATCTGGTCAGAAATCCTCATGT 58.221 43.478 4.67 0.00 41.36 3.21
482 584 3.201487 TGCATCTGGTCAGAAATCCTCAT 59.799 43.478 4.67 0.00 41.36 2.90
488 591 3.504906 CACACTTGCATCTGGTCAGAAAT 59.495 43.478 4.67 0.00 41.36 2.17
492 595 1.534163 CACACACTTGCATCTGGTCAG 59.466 52.381 0.00 0.00 0.00 3.51
493 596 1.596603 CACACACTTGCATCTGGTCA 58.403 50.000 0.00 0.00 0.00 4.02
500 603 2.606961 CGCGTCCACACACTTGCAT 61.607 57.895 0.00 0.00 0.00 3.96
517 620 2.099062 GCTTTCACAGCGCCATCG 59.901 61.111 2.29 0.00 39.29 3.84
534 637 1.271379 GTCCCAGGGGTTTTAAAAGCG 59.729 52.381 20.54 9.53 37.28 4.68
538 641 2.109304 CTGAGGTCCCAGGGGTTTTAAA 59.891 50.000 5.33 0.00 36.47 1.52
541 644 2.081585 GCTGAGGTCCCAGGGGTTTT 62.082 60.000 5.33 0.00 34.82 2.43
575 678 4.020617 TGGGCTGGAACGCTGGAG 62.021 66.667 0.00 0.00 0.00 3.86
588 691 2.004808 GCTGGGAATAAAGCGTGGGC 62.005 60.000 0.00 0.00 40.37 5.36
590 693 1.017387 GAGCTGGGAATAAAGCGTGG 58.983 55.000 0.00 0.00 44.34 4.94
594 697 2.162408 GTGTGTGAGCTGGGAATAAAGC 59.838 50.000 0.00 0.00 39.82 3.51
640 743 0.318107 CAGAACGGCAGCCTTTGTTG 60.318 55.000 8.15 2.80 0.00 3.33
643 750 1.283793 CACAGAACGGCAGCCTTTG 59.716 57.895 8.15 3.97 0.00 2.77
700 809 3.997021 AGACAAAGTCGACAGCAATTAGG 59.003 43.478 19.50 1.91 37.67 2.69
701 810 4.686091 TGAGACAAAGTCGACAGCAATTAG 59.314 41.667 19.50 1.06 37.67 1.73
703 812 3.466836 TGAGACAAAGTCGACAGCAATT 58.533 40.909 19.50 0.00 37.67 2.32
715 923 2.624838 ACCCACAGCAATTGAGACAAAG 59.375 45.455 10.34 0.00 0.00 2.77
729 937 3.596066 CTGACGGCCTCACCCACAG 62.596 68.421 0.00 0.00 33.70 3.66
810 1037 2.705658 TCATGTGGACAGAGGTTGAACT 59.294 45.455 0.00 0.00 0.00 3.01
811 1038 3.070018 CTCATGTGGACAGAGGTTGAAC 58.930 50.000 0.00 0.00 0.00 3.18
813 1040 2.329267 ACTCATGTGGACAGAGGTTGA 58.671 47.619 0.00 0.00 33.76 3.18
814 1041 2.847327 ACTCATGTGGACAGAGGTTG 57.153 50.000 0.00 0.00 33.76 3.77
815 1042 2.975489 AGAACTCATGTGGACAGAGGTT 59.025 45.455 0.00 3.73 33.76 3.50
864 1091 9.918630 CCTTCTCTGATTAACAATCACAAAATT 57.081 29.630 0.00 0.00 42.69 1.82
865 1092 8.526147 CCCTTCTCTGATTAACAATCACAAAAT 58.474 33.333 0.00 0.00 42.69 1.82
866 1093 7.505585 ACCCTTCTCTGATTAACAATCACAAAA 59.494 33.333 0.00 0.00 42.69 2.44
867 1094 7.004086 ACCCTTCTCTGATTAACAATCACAAA 58.996 34.615 0.00 0.00 42.69 2.83
868 1095 6.542821 ACCCTTCTCTGATTAACAATCACAA 58.457 36.000 0.00 0.00 42.69 3.33
904 1131 4.900054 GGGTAGTATGTTCACCTATGGAGT 59.100 45.833 0.00 0.00 32.66 3.85
930 1157 4.806330 CAAAGCATGAAGAAATGAGCACT 58.194 39.130 0.00 0.00 0.00 4.40
966 1193 2.287188 CGGTTGATTGGCATACATGAGC 60.287 50.000 0.00 0.00 0.00 4.26
1009 1236 0.990282 ATGACCAGCAGGGCCAGTAT 60.990 55.000 6.18 0.00 45.14 2.12
1018 1245 2.943690 CTCCATCAGAAATGACCAGCAG 59.056 50.000 0.00 0.00 0.00 4.24
1024 1251 3.084039 TGCCAACTCCATCAGAAATGAC 58.916 45.455 0.00 0.00 0.00 3.06
1059 1286 1.373812 GCTGTTACCGGGGACTGTT 59.626 57.895 6.32 0.00 0.00 3.16
1099 1326 1.388547 GTGATGGCCCGCTTGAAATA 58.611 50.000 0.00 0.00 0.00 1.40
1136 1363 1.302511 GCGTTCCAAGAGCCCAAGA 60.303 57.895 0.00 0.00 0.00 3.02
1164 1391 2.353610 CCCCTCCCACTTGCAATGC 61.354 63.158 0.00 0.00 0.00 3.56
1182 1409 1.227943 TGTGAGGCTGCAGTTGACC 60.228 57.895 16.64 7.84 0.00 4.02
1200 1427 2.347490 GTGATGCGACCTGGGTGT 59.653 61.111 0.00 0.00 0.00 4.16
1213 1440 0.674895 GCAAGGTTCAGCTCCGTGAT 60.675 55.000 9.57 0.00 36.76 3.06
1218 1445 1.743252 CTCGGCAAGGTTCAGCTCC 60.743 63.158 0.00 0.00 0.00 4.70
1220 1447 2.359230 GCTCGGCAAGGTTCAGCT 60.359 61.111 0.00 0.00 0.00 4.24
1230 1457 2.281484 GACAACCCTTGCTCGGCA 60.281 61.111 0.00 0.00 36.47 5.69
1231 1458 2.281484 TGACAACCCTTGCTCGGC 60.281 61.111 0.00 0.00 0.00 5.54
1252 1479 0.468029 CCAAGGGATGGGGAAATCGG 60.468 60.000 0.00 0.00 46.27 4.18
1302 1529 3.019564 GCCAGTGAAGCTATTTGTGGAT 58.980 45.455 6.29 0.00 0.00 3.41
1327 1554 2.897969 GGAGACTGTTGAGTGGAGGTAA 59.102 50.000 0.00 0.00 30.16 2.85
1350 1577 3.951037 TCAGCCAAAGTTTTTGCAGTCTA 59.049 39.130 9.01 0.00 31.82 2.59
1375 1602 7.067533 GGAATGATCCCTTGCAAAGAGTTTTC 61.068 42.308 0.00 5.23 45.77 2.29
1404 1631 6.877611 AGGTTGGAACTATTTGTAAGTGTG 57.122 37.500 0.00 0.00 0.00 3.82
1438 1665 7.242101 ACCTATCAGGGAGTTACCAGATAGATA 59.758 40.741 19.23 3.23 46.45 1.98
1440 1667 5.375956 ACCTATCAGGGAGTTACCAGATAGA 59.624 44.000 19.23 0.00 46.45 1.98
1446 1673 3.769189 TCACCTATCAGGGAGTTACCA 57.231 47.619 0.00 0.00 40.58 3.25
1460 1687 6.216868 GCCTATATTAAGGGGGATTTCACCTA 59.783 42.308 0.00 0.00 40.05 3.08
1470 1697 4.388577 AAGCAAGCCTATATTAAGGGGG 57.611 45.455 0.00 0.00 37.11 5.40
1473 1700 6.959639 TTGGAAAGCAAGCCTATATTAAGG 57.040 37.500 0.00 0.00 39.87 2.69
1497 1724 8.450578 TTTCGGCAATCTGTAATTCTGATAAT 57.549 30.769 0.00 0.00 34.94 1.28
1500 1727 6.757897 TTTTCGGCAATCTGTAATTCTGAT 57.242 33.333 0.00 0.00 36.51 2.90
1503 1730 9.125026 AGATTATTTTCGGCAATCTGTAATTCT 57.875 29.630 0.00 0.00 37.57 2.40
1504 1731 9.387123 GAGATTATTTTCGGCAATCTGTAATTC 57.613 33.333 1.03 0.00 38.74 2.17
1505 1732 8.902806 TGAGATTATTTTCGGCAATCTGTAATT 58.097 29.630 1.03 0.00 38.74 1.40
1506 1733 8.345565 GTGAGATTATTTTCGGCAATCTGTAAT 58.654 33.333 1.03 0.00 38.74 1.89
1513 1740 3.315191 CCGGTGAGATTATTTTCGGCAAT 59.685 43.478 0.00 0.00 0.00 3.56
1528 1755 1.153628 GTGGGATCGTTCCGGTGAG 60.154 63.158 0.00 0.00 43.63 3.51
1618 1845 4.437682 TCGGAAATTGCCCTATCTCATT 57.562 40.909 0.00 0.00 0.00 2.57
1629 1856 1.474077 ACTGCCAGATTCGGAAATTGC 59.526 47.619 0.00 0.00 0.00 3.56
1638 1865 7.029563 CACCAAGTAATAAAACTGCCAGATTC 58.970 38.462 0.00 0.00 0.00 2.52
1640 1867 5.418840 CCACCAAGTAATAAAACTGCCAGAT 59.581 40.000 0.00 0.00 0.00 2.90
1645 1872 8.186163 GGTAATACCACCAAGTAATAAAACTGC 58.814 37.037 4.24 0.00 38.42 4.40
1646 1873 8.680001 GGGTAATACCACCAAGTAATAAAACTG 58.320 37.037 12.03 0.00 41.02 3.16
1647 1874 8.617491 AGGGTAATACCACCAAGTAATAAAACT 58.383 33.333 12.03 0.00 41.02 2.66
1653 1880 7.017254 CCTGATAGGGTAATACCACCAAGTAAT 59.983 40.741 12.03 0.00 41.02 1.89
1667 1894 5.954004 TGGGATACTACCTGATAGGGTAA 57.046 43.478 0.00 0.00 40.58 2.85
1670 1897 4.489737 TGTTGGGATACTACCTGATAGGG 58.510 47.826 0.00 0.00 40.58 3.53
1671 1898 5.221661 GGTTGTTGGGATACTACCTGATAGG 60.222 48.000 0.00 0.00 39.73 2.57
1683 1910 5.575157 TGATTAAGCAAGGTTGTTGGGATA 58.425 37.500 0.00 0.00 0.00 2.59
1762 1989 4.470602 GGGAGGGTATCACCAAAATTAGG 58.529 47.826 0.00 0.00 41.02 2.69
1785 2012 2.894387 GTGAGCCATGCGAGCCTC 60.894 66.667 0.00 0.00 0.00 4.70
1788 2015 1.063649 CAATGTGAGCCATGCGAGC 59.936 57.895 0.00 0.00 32.82 5.03
1792 2019 2.042686 TAGTCCAATGTGAGCCATGC 57.957 50.000 0.00 0.00 32.82 4.06
1796 2023 6.699575 ATTTGTTATAGTCCAATGTGAGCC 57.300 37.500 0.00 0.00 0.00 4.70
1801 2028 9.088987 ACCTTCAAATTTGTTATAGTCCAATGT 57.911 29.630 17.47 2.61 0.00 2.71
1802 2029 9.573133 GACCTTCAAATTTGTTATAGTCCAATG 57.427 33.333 17.47 2.05 0.00 2.82
1803 2030 9.308000 TGACCTTCAAATTTGTTATAGTCCAAT 57.692 29.630 17.47 0.00 0.00 3.16
1817 2044 2.827921 GCTGGGATGTGACCTTCAAATT 59.172 45.455 0.00 0.00 0.00 1.82
1818 2045 2.042162 AGCTGGGATGTGACCTTCAAAT 59.958 45.455 0.00 0.00 0.00 2.32
1853 2080 4.016444 GTCCAATGTTGATAGCCCTGAAA 58.984 43.478 0.00 0.00 0.00 2.69
1883 2110 5.450412 GGAACTTGAGCTGTCAATTTGTTGA 60.450 40.000 0.00 0.00 41.96 3.18
2004 2231 3.428999 GCAGAGATGTGCAATTGCTCAAT 60.429 43.478 31.84 24.57 45.82 2.57
2038 2265 6.128254 GCTCCTTGTAACTGATTTTGACCTAC 60.128 42.308 0.00 0.00 0.00 3.18
2044 2271 7.552687 TGGTATAGCTCCTTGTAACTGATTTTG 59.447 37.037 3.20 0.00 0.00 2.44
2067 2294 4.215109 ACAGGTTGCTAACAGAATTTGGT 58.785 39.130 0.00 0.00 0.00 3.67
2072 2299 3.503748 GCTTGACAGGTTGCTAACAGAAT 59.496 43.478 0.00 0.00 0.00 2.40
2077 2304 3.066760 AGTTTGCTTGACAGGTTGCTAAC 59.933 43.478 0.00 0.00 39.86 2.34
2080 2307 1.767759 AGTTTGCTTGACAGGTTGCT 58.232 45.000 0.00 0.00 0.00 3.91
2082 2309 3.781079 TGAAGTTTGCTTGACAGGTTG 57.219 42.857 0.00 0.00 34.61 3.77
2110 2337 7.036220 CCTGACAAGTCGTTTCTATCTAATGT 58.964 38.462 0.00 0.00 0.00 2.71
2111 2338 6.477033 CCCTGACAAGTCGTTTCTATCTAATG 59.523 42.308 0.00 0.00 0.00 1.90
2119 2346 1.760613 TGTCCCTGACAAGTCGTTTCT 59.239 47.619 0.00 0.00 39.78 2.52
2120 2347 2.234300 TGTCCCTGACAAGTCGTTTC 57.766 50.000 0.00 0.00 39.78 2.78
2187 2414 0.093705 CGCTGAGCTTGTTTCTACGC 59.906 55.000 1.78 0.00 0.00 4.42
2264 2491 3.806949 TTGGGCCAGTGAAGTTATTCT 57.193 42.857 6.23 0.00 36.33 2.40
2318 2545 8.646004 ACTCATTGCTTGCTAGATAGATCTTTA 58.354 33.333 0.00 0.00 38.32 1.85
2319 2546 7.507829 ACTCATTGCTTGCTAGATAGATCTTT 58.492 34.615 0.00 0.00 38.32 2.52
2336 2563 2.151202 TCGGACCTTCAAACTCATTGC 58.849 47.619 0.00 0.00 38.98 3.56
2371 2598 2.929641 TGTGAGCATGGTGAAGTTTCA 58.070 42.857 0.00 0.00 34.20 2.69
2381 2608 1.270550 GGTTCAACCTTGTGAGCATGG 59.729 52.381 0.00 0.00 43.34 3.66
2437 5090 1.134551 GGAGCCAGTGTGGAAGATCTC 60.135 57.143 0.00 0.00 40.96 2.75
2490 5143 7.612677 ACTCTGTAGGTATTGTTCCTTGTAAG 58.387 38.462 0.00 0.00 36.60 2.34
2545 5198 7.039784 CCCAGAAAGTTTGTTGGATGAAAGATA 60.040 37.037 14.49 0.00 32.34 1.98
2581 5234 3.388024 TCTTGACACTCACCTAAAGCACT 59.612 43.478 0.00 0.00 0.00 4.40
2614 5267 6.261826 GTGAGAATATTCTGGTCCATTTGGAG 59.738 42.308 22.61 0.00 40.57 3.86
2643 5296 3.181465 TGCTCAAAGACTCCGGAATATCC 60.181 47.826 5.23 0.00 0.00 2.59
2724 5377 9.553064 AGATATTTCAGGTCACTTATTGATGTC 57.447 33.333 0.00 0.00 36.32 3.06
2731 5384 7.861629 TGGTTCAGATATTTCAGGTCACTTAT 58.138 34.615 0.00 0.00 0.00 1.73
2846 5499 1.966451 GCTCCACCACAAAGTCCCG 60.966 63.158 0.00 0.00 0.00 5.14
2939 5592 2.492088 GTGAAGCCAACCAAAGGGATAC 59.508 50.000 0.00 0.00 38.05 2.24
2973 5626 4.222145 TCCAGGAGTACAAAGTAAGCGAAT 59.778 41.667 0.00 0.00 0.00 3.34
2976 5629 3.192844 TCTCCAGGAGTACAAAGTAAGCG 59.807 47.826 16.65 0.00 0.00 4.68
3117 5773 1.819903 ACTGAACCGTAGCTTCCTCTC 59.180 52.381 0.00 0.00 0.00 3.20
3225 5881 3.738982 TCTCAAAACCTCGCATTCTGAA 58.261 40.909 0.00 0.00 0.00 3.02
3234 5890 4.921515 TGTCGAATACTTCTCAAAACCTCG 59.078 41.667 0.00 0.00 0.00 4.63
3277 5933 8.504812 TTATCTATTGTTGAGCATGCTGTTAA 57.495 30.769 28.27 14.45 0.00 2.01
3387 6043 2.162408 GCTCAAAATCCTTGGACCTTCG 59.838 50.000 0.00 0.00 0.00 3.79
3460 6116 4.454847 GGATCTTGTGATATCATGGTGCAG 59.545 45.833 9.02 0.00 32.19 4.41
3810 6477 8.293699 AGAAGAACAACTCCAAAACTGTAAAT 57.706 30.769 0.00 0.00 0.00 1.40
3827 6494 9.579932 TTATCTATCAGCATCTCTAGAAGAACA 57.420 33.333 0.00 0.00 37.61 3.18
3850 6518 6.893020 AAATAGGGTCTGTTGGTCTCTTAT 57.107 37.500 0.00 0.00 0.00 1.73
3854 6522 5.181433 GTCAAAAATAGGGTCTGTTGGTCTC 59.819 44.000 0.00 0.00 0.00 3.36
4181 8652 2.135139 TCGTGACAAGTGCAATCTCAC 58.865 47.619 12.59 12.59 37.24 3.51
4185 8656 5.107104 TGAGTTAATCGTGACAAGTGCAATC 60.107 40.000 0.00 0.00 0.00 2.67
4269 8743 8.841300 TGCGGCATTAATAGTCAATACAAATTA 58.159 29.630 0.00 0.00 0.00 1.40
4276 8750 5.474825 TCGATGCGGCATTAATAGTCAATA 58.525 37.500 17.78 0.00 0.00 1.90
4285 8759 3.660501 ATAGACTCGATGCGGCATTAA 57.339 42.857 17.78 7.44 0.00 1.40
4301 8775 7.321153 GGTGTGAGCTCTTAAAGTTGTATAGA 58.679 38.462 16.19 0.00 0.00 1.98
4303 8777 6.014070 TGGGTGTGAGCTCTTAAAGTTGTATA 60.014 38.462 16.19 0.00 0.00 1.47
4311 8785 1.271379 GGCTGGGTGTGAGCTCTTAAA 60.271 52.381 16.19 0.00 36.63 1.52
4312 8786 0.324943 GGCTGGGTGTGAGCTCTTAA 59.675 55.000 16.19 0.00 36.63 1.85
4319 8793 4.636249 GATTTATAGAGGCTGGGTGTGAG 58.364 47.826 0.00 0.00 0.00 3.51
4356 8830 9.748708 GCATTTTACTCATGGCTAATTTATTGA 57.251 29.630 0.00 0.00 0.00 2.57
4357 8831 8.693504 CGCATTTTACTCATGGCTAATTTATTG 58.306 33.333 0.00 0.00 0.00 1.90
4427 8916 0.529773 ACTCTTGAAAGTGCGACGCA 60.530 50.000 20.50 20.50 35.60 5.24
4428 8917 0.582005 AACTCTTGAAAGTGCGACGC 59.418 50.000 14.19 14.19 0.00 5.19
4431 8920 3.384668 CTCTCAACTCTTGAAAGTGCGA 58.615 45.455 0.00 0.00 39.58 5.10
4432 8921 2.478134 CCTCTCAACTCTTGAAAGTGCG 59.522 50.000 0.00 0.00 39.58 5.34
4433 8922 3.733337 TCCTCTCAACTCTTGAAAGTGC 58.267 45.455 0.00 0.00 39.58 4.40
4434 8923 4.153835 GCATCCTCTCAACTCTTGAAAGTG 59.846 45.833 0.00 0.00 39.58 3.16
4435 8924 4.041444 AGCATCCTCTCAACTCTTGAAAGT 59.959 41.667 0.00 0.00 39.58 2.66
4436 8925 4.577875 AGCATCCTCTCAACTCTTGAAAG 58.422 43.478 0.00 0.00 39.58 2.62
4437 8926 4.630644 AGCATCCTCTCAACTCTTGAAA 57.369 40.909 0.00 0.00 39.58 2.69
4438 8927 5.946942 ATAGCATCCTCTCAACTCTTGAA 57.053 39.130 0.00 0.00 39.58 2.69
4439 8928 5.668471 CAATAGCATCCTCTCAACTCTTGA 58.332 41.667 0.00 0.00 38.17 3.02
4440 8929 4.272991 GCAATAGCATCCTCTCAACTCTTG 59.727 45.833 0.00 0.00 41.58 3.02
4441 8930 4.163839 AGCAATAGCATCCTCTCAACTCTT 59.836 41.667 0.00 0.00 45.49 2.85
4442 8931 3.710677 AGCAATAGCATCCTCTCAACTCT 59.289 43.478 0.00 0.00 45.49 3.24
4443 8932 4.070630 AGCAATAGCATCCTCTCAACTC 57.929 45.455 0.00 0.00 45.49 3.01
4444 8933 4.406972 TGTAGCAATAGCATCCTCTCAACT 59.593 41.667 0.00 0.00 45.49 3.16
4445 8934 4.697514 TGTAGCAATAGCATCCTCTCAAC 58.302 43.478 0.00 0.00 45.49 3.18
4446 8935 5.557576 ATGTAGCAATAGCATCCTCTCAA 57.442 39.130 0.00 0.00 45.49 3.02
4447 8936 5.777223 AGTATGTAGCAATAGCATCCTCTCA 59.223 40.000 0.00 0.00 45.49 3.27
4448 8937 6.098679 CAGTATGTAGCAATAGCATCCTCTC 58.901 44.000 0.00 0.00 45.49 3.20
4449 8938 5.046735 CCAGTATGTAGCAATAGCATCCTCT 60.047 44.000 0.00 0.00 45.49 3.69
4450 8939 5.174395 CCAGTATGTAGCAATAGCATCCTC 58.826 45.833 0.00 0.00 45.49 3.71
4451 8940 4.594920 ACCAGTATGTAGCAATAGCATCCT 59.405 41.667 0.00 0.00 45.49 3.24
4452 8941 4.899502 ACCAGTATGTAGCAATAGCATCC 58.100 43.478 0.00 0.00 45.49 3.51
4463 8952 6.264292 ACTTCATGAGAGCTACCAGTATGTAG 59.736 42.308 0.00 0.00 40.96 2.74
4464 8953 6.129874 ACTTCATGAGAGCTACCAGTATGTA 58.870 40.000 0.00 0.00 0.00 2.29
4465 8954 4.959210 ACTTCATGAGAGCTACCAGTATGT 59.041 41.667 0.00 0.00 0.00 2.29
4466 8955 5.528043 ACTTCATGAGAGCTACCAGTATG 57.472 43.478 0.00 0.00 0.00 2.39
4467 8956 5.683509 GCAACTTCATGAGAGCTACCAGTAT 60.684 44.000 0.00 0.00 0.00 2.12
4474 8963 2.231235 TCACGCAACTTCATGAGAGCTA 59.769 45.455 0.00 0.00 0.00 3.32
4476 8965 1.432514 TCACGCAACTTCATGAGAGC 58.567 50.000 0.00 0.00 0.00 4.09
4479 8968 4.428209 AGTAGATCACGCAACTTCATGAG 58.572 43.478 0.00 0.00 0.00 2.90
4490 8979 2.480416 CCAGTCCTGAAGTAGATCACGC 60.480 54.545 0.00 0.00 0.00 5.34
4516 9005 2.290641 GCACCAGTTTCTGTCAAATCGT 59.709 45.455 0.00 0.00 0.00 3.73
4526 9015 3.788227 TGTTCCATAGCACCAGTTTCT 57.212 42.857 0.00 0.00 0.00 2.52
4531 9020 4.036027 GTGATGATTGTTCCATAGCACCAG 59.964 45.833 0.00 0.00 0.00 4.00
4591 9080 6.462768 ATTGCTTTCAAGAAGTATTGGCACAA 60.463 34.615 0.00 0.00 38.67 3.33
4592 9081 3.888323 TGCTTTCAAGAAGTATTGGCACA 59.112 39.130 0.00 0.00 0.00 4.57
4593 9082 4.503741 TGCTTTCAAGAAGTATTGGCAC 57.496 40.909 0.00 0.00 0.00 5.01
4594 9083 5.726980 ATTGCTTTCAAGAAGTATTGGCA 57.273 34.783 0.00 0.00 35.37 4.92
4595 9084 6.528072 GTGTATTGCTTTCAAGAAGTATTGGC 59.472 38.462 0.00 0.00 35.37 4.52
4596 9085 7.820648 AGTGTATTGCTTTCAAGAAGTATTGG 58.179 34.615 0.00 0.00 35.37 3.16
4597 9086 9.979270 CTAGTGTATTGCTTTCAAGAAGTATTG 57.021 33.333 0.00 0.00 35.37 1.90
4598 9087 9.944376 TCTAGTGTATTGCTTTCAAGAAGTATT 57.056 29.630 0.00 0.00 35.37 1.89
4602 9091 9.950680 TTTTTCTAGTGTATTGCTTTCAAGAAG 57.049 29.630 0.00 0.00 35.37 2.85
4605 9094 9.950680 TTCTTTTTCTAGTGTATTGCTTTCAAG 57.049 29.630 0.00 0.00 35.37 3.02
4621 9110 9.308318 GTGCATTGTTAAAGGTTTCTTTTTCTA 57.692 29.630 0.00 0.00 42.61 2.10
4622 9111 7.821846 TGTGCATTGTTAAAGGTTTCTTTTTCT 59.178 29.630 0.00 0.00 42.61 2.52
4623 9112 7.969314 TGTGCATTGTTAAAGGTTTCTTTTTC 58.031 30.769 0.00 0.00 42.61 2.29
4637 9126 7.806409 AATATAGATGTGCTGTGCATTGTTA 57.194 32.000 0.00 0.00 41.91 2.41
4639 9128 6.704289 AAATATAGATGTGCTGTGCATTGT 57.296 33.333 0.00 0.00 41.91 2.71
4640 9129 8.294577 ACATAAATATAGATGTGCTGTGCATTG 58.705 33.333 0.00 0.00 41.91 2.82
4641 9130 8.400184 ACATAAATATAGATGTGCTGTGCATT 57.600 30.769 0.00 0.00 41.91 3.56
4642 9131 7.991084 ACATAAATATAGATGTGCTGTGCAT 57.009 32.000 0.00 0.00 41.91 3.96
4661 9150 8.453238 TGTCCTGCTTAGTTTGTAAAACATAA 57.547 30.769 5.72 1.79 0.00 1.90
4670 9159 4.137543 CCTTTCTGTCCTGCTTAGTTTGT 58.862 43.478 0.00 0.00 0.00 2.83
4688 9177 8.103935 GCTCTTAAATAGTATATGGCTCCCTTT 58.896 37.037 0.00 0.00 0.00 3.11
4689 9178 7.237679 TGCTCTTAAATAGTATATGGCTCCCTT 59.762 37.037 0.00 0.00 0.00 3.95
4691 9180 6.819146 GTGCTCTTAAATAGTATATGGCTCCC 59.181 42.308 0.00 0.00 0.00 4.30
4693 9182 8.833231 TTGTGCTCTTAAATAGTATATGGCTC 57.167 34.615 0.00 0.00 0.00 4.70
4705 9194 9.252962 CTCATTTCTGTTTTTGTGCTCTTAAAT 57.747 29.630 0.00 0.00 0.00 1.40
4708 9197 6.183360 TGCTCATTTCTGTTTTTGTGCTCTTA 60.183 34.615 0.00 0.00 31.71 2.10
4713 9202 4.362279 TCTGCTCATTTCTGTTTTTGTGC 58.638 39.130 0.00 0.00 0.00 4.57
4717 9206 6.920210 GCTAGTTTCTGCTCATTTCTGTTTTT 59.080 34.615 0.00 0.00 0.00 1.94
4728 9217 0.036010 GGGCTGCTAGTTTCTGCTCA 60.036 55.000 0.00 0.00 0.00 4.26
4741 9230 0.031178 CTGCAATATTTCGGGGCTGC 59.969 55.000 0.00 0.00 0.00 5.25
4743 9232 2.664402 ATCTGCAATATTTCGGGGCT 57.336 45.000 0.00 0.00 0.00 5.19
4746 9235 8.729756 TCATTTATGTATCTGCAATATTTCGGG 58.270 33.333 0.00 0.00 0.00 5.14
4779 9268 3.402110 TGTGTTCAGTTATGCTCACTGG 58.598 45.455 9.67 0.00 41.83 4.00
4783 9272 5.798132 AGATTCTGTGTTCAGTTATGCTCA 58.202 37.500 0.00 0.00 41.91 4.26
4793 9282 5.013495 AGGATTCAGGAAGATTCTGTGTTCA 59.987 40.000 0.00 0.00 31.96 3.18
4802 9291 1.925255 TGGCCAGGATTCAGGAAGATT 59.075 47.619 0.00 0.00 0.00 2.40
4804 9293 1.371467 TTGGCCAGGATTCAGGAAGA 58.629 50.000 5.11 0.00 0.00 2.87
4822 9311 5.332743 TCATGCTCCTGGTAAATCCTTTTT 58.667 37.500 0.00 0.00 37.07 1.94
4859 9348 1.900486 GGAGCACCACAGGTAGTTAGT 59.100 52.381 0.00 0.00 32.11 2.24
4895 9384 5.853282 GTGTAACATGCTGAAACTTCATGTC 59.147 40.000 7.43 0.00 46.92 3.06
4910 9399 1.468127 TCATGCTTGGCGTGTAACATG 59.532 47.619 10.83 0.00 44.84 3.21
4920 9409 1.129811 GCTGCAATTTTCATGCTTGGC 59.870 47.619 0.00 0.00 44.14 4.52
4952 9443 7.496920 TGAAGCATAGTGATAAGACATTTCTGG 59.503 37.037 0.00 0.00 29.98 3.86
5009 9504 6.381420 TCAGGATGTTAGAGTAGAGGAAAAGG 59.619 42.308 0.00 0.00 37.40 3.11
5023 9518 4.422073 TGCCCAGTAATCAGGATGTTAG 57.578 45.455 0.00 0.00 37.40 2.34
5033 9528 4.454728 TCTTTTGCATTGCCCAGTAATC 57.545 40.909 6.12 0.00 0.00 1.75
5073 9568 8.367660 ACTCATAAGATGTAAAGACCTTGAGA 57.632 34.615 0.00 0.00 0.00 3.27
5088 9583 8.651589 TGTTCTCCGGATATAACTCATAAGAT 57.348 34.615 19.35 0.00 0.00 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.