Multiple sequence alignment - TraesCS1A01G390800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G390800 chr1A 100.000 5385 0 0 1 5385 558129431 558134815 0.000000e+00 9945.0
1 TraesCS1A01G390800 chr1A 97.463 1813 43 2 3575 5385 581115180 581116991 0.000000e+00 3090.0
2 TraesCS1A01G390800 chr1A 85.812 437 40 12 958 1383 558148097 558148522 1.380000e-120 444.0
3 TraesCS1A01G390800 chr1A 75.377 995 185 37 2030 3005 558149160 558150113 4.990000e-115 425.0
4 TraesCS1A01G390800 chr1A 84.906 106 9 6 433 536 120021628 120021728 3.430000e-17 100.0
5 TraesCS1A01G390800 chr1A 97.561 41 1 0 3544 3584 98509165 98509205 2.690000e-08 71.3
6 TraesCS1A01G390800 chr2A 97.680 1810 39 2 3578 5385 740281039 740279231 0.000000e+00 3107.0
7 TraesCS1A01G390800 chr2A 84.112 107 10 6 433 537 657509487 657509588 4.440000e-16 97.1
8 TraesCS1A01G390800 chr4A 97.623 1809 40 3 3578 5385 582419757 582417951 0.000000e+00 3099.0
9 TraesCS1A01G390800 chr4A 95.714 70 3 0 1011 1080 614004513 614004582 4.410000e-21 113.0
10 TraesCS1A01G390800 chr4A 100.000 29 0 0 508 536 343490249 343490277 3.000000e-03 54.7
11 TraesCS1A01G390800 chr6A 97.517 1812 40 2 3578 5385 56356143 56354333 0.000000e+00 3092.0
12 TraesCS1A01G390800 chr6A 97.511 1808 44 1 3578 5385 517243276 517241470 0.000000e+00 3088.0
13 TraesCS1A01G390800 chr6A 97.561 41 1 0 3542 3582 12674142 12674182 2.690000e-08 71.3
14 TraesCS1A01G390800 chr6A 97.561 41 1 0 3544 3584 530145440 530145400 2.690000e-08 71.3
15 TraesCS1A01G390800 chr6A 97.561 41 1 0 3544 3584 604001275 604001315 2.690000e-08 71.3
16 TraesCS1A01G390800 chr6A 97.561 41 1 0 3544 3584 612212112 612212152 2.690000e-08 71.3
17 TraesCS1A01G390800 chr7A 97.354 1814 44 2 3575 5385 665858609 665860421 0.000000e+00 3081.0
18 TraesCS1A01G390800 chr7A 97.403 1810 44 3 3578 5385 68153044 68154852 0.000000e+00 3079.0
19 TraesCS1A01G390800 chr7A 97.403 1810 44 2 3578 5385 732831766 732829958 0.000000e+00 3079.0
20 TraesCS1A01G390800 chr7A 97.293 1810 46 2 3578 5385 45644900 45643092 0.000000e+00 3068.0
21 TraesCS1A01G390800 chr7A 97.143 35 1 0 3544 3578 54171826 54171792 5.820000e-05 60.2
22 TraesCS1A01G390800 chr1B 91.888 1849 109 20 1704 3523 642527711 642529547 0.000000e+00 2545.0
23 TraesCS1A01G390800 chr1B 87.741 1036 89 8 2489 3523 642620030 642621028 0.000000e+00 1175.0
24 TraesCS1A01G390800 chr1B 92.415 646 33 8 884 1518 642526859 642527499 0.000000e+00 907.0
25 TraesCS1A01G390800 chr1B 91.796 451 28 5 923 1373 642637066 642637507 2.130000e-173 619.0
26 TraesCS1A01G390800 chr1B 83.300 503 49 18 1799 2274 642617345 642617839 1.070000e-116 431.0
27 TraesCS1A01G390800 chr1B 76.788 853 136 36 2169 3005 642639340 642640146 6.450000e-114 422.0
28 TraesCS1A01G390800 chr1B 97.183 142 4 0 2270 2411 642619881 642620022 1.940000e-59 241.0
29 TraesCS1A01G390800 chr1B 93.711 159 9 1 1529 1686 642527480 642527638 2.510000e-58 237.0
30 TraesCS1A01G390800 chr1B 89.032 155 15 2 1543 1696 642610123 642610276 1.980000e-44 191.0
31 TraesCS1A01G390800 chr1B 92.000 75 6 0 1011 1085 637368591 637368665 7.380000e-19 106.0
32 TraesCS1A01G390800 chr1D 85.279 985 114 15 2034 3005 465813093 465814059 0.000000e+00 987.0
33 TraesCS1A01G390800 chr1D 92.722 687 36 5 691 1367 465811825 465812507 0.000000e+00 979.0
34 TraesCS1A01G390800 chr1D 87.294 425 34 13 963 1376 465820818 465821233 8.170000e-128 468.0
35 TraesCS1A01G390800 chr1D 75.151 664 129 26 2001 2645 465821634 465822280 4.110000e-71 279.0
36 TraesCS1A01G390800 chr1D 92.958 71 5 0 1011 1081 462298739 462298809 2.650000e-18 104.0
37 TraesCS1A01G390800 chr2D 76.848 514 75 28 52 536 363477085 363476587 3.220000e-62 250.0
38 TraesCS1A01G390800 chr4D 92.045 88 5 2 1002 1087 477089471 477089384 7.320000e-24 122.0
39 TraesCS1A01G390800 chr4D 100.000 30 0 0 507 536 35212824 35212795 7.530000e-04 56.5
40 TraesCS1A01G390800 chr2B 73.454 388 74 25 163 539 431550752 431550383 9.470000e-23 119.0
41 TraesCS1A01G390800 chr3D 95.775 71 3 0 1011 1081 511444270 511444200 1.230000e-21 115.0
42 TraesCS1A01G390800 chr3D 91.549 71 6 0 1011 1081 511451365 511451295 1.230000e-16 99.0
43 TraesCS1A01G390800 chr3D 78.182 110 18 6 431 536 550275505 550275398 1.250000e-06 65.8
44 TraesCS1A01G390800 chr3B 95.775 71 3 0 1011 1081 673098166 673098096 1.230000e-21 115.0
45 TraesCS1A01G390800 chr3B 84.167 120 14 5 419 536 65537943 65537827 1.590000e-20 111.0
46 TraesCS1A01G390800 chr5D 94.286 70 4 0 1011 1080 554577395 554577326 2.050000e-19 108.0
47 TraesCS1A01G390800 chr6B 81.148 122 18 5 418 536 65164058 65163939 5.740000e-15 93.5
48 TraesCS1A01G390800 chr7D 80.508 118 13 9 423 536 325980399 325980510 1.240000e-11 82.4
49 TraesCS1A01G390800 chr3A 100.000 39 0 0 3544 3582 7401253 7401215 7.480000e-09 73.1
50 TraesCS1A01G390800 chrUn 97.561 41 1 0 3544 3584 259624827 259624867 2.690000e-08 71.3
51 TraesCS1A01G390800 chrUn 97.561 41 1 0 3544 3584 471129226 471129186 2.690000e-08 71.3
52 TraesCS1A01G390800 chr7B 94.286 35 2 0 297 331 219669783 219669749 3.000000e-03 54.7
53 TraesCS1A01G390800 chr5A 96.970 33 0 1 504 536 692538109 692538078 3.000000e-03 54.7
54 TraesCS1A01G390800 chr5A 100.000 28 0 0 509 536 617903960 617903933 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G390800 chr1A 558129431 558134815 5384 False 9945.000000 9945 100.000000 1 5385 1 chr1A.!!$F3 5384
1 TraesCS1A01G390800 chr1A 581115180 581116991 1811 False 3090.000000 3090 97.463000 3575 5385 1 chr1A.!!$F4 1810
2 TraesCS1A01G390800 chr1A 558148097 558150113 2016 False 434.500000 444 80.594500 958 3005 2 chr1A.!!$F5 2047
3 TraesCS1A01G390800 chr2A 740279231 740281039 1808 True 3107.000000 3107 97.680000 3578 5385 1 chr2A.!!$R1 1807
4 TraesCS1A01G390800 chr4A 582417951 582419757 1806 True 3099.000000 3099 97.623000 3578 5385 1 chr4A.!!$R1 1807
5 TraesCS1A01G390800 chr6A 56354333 56356143 1810 True 3092.000000 3092 97.517000 3578 5385 1 chr6A.!!$R1 1807
6 TraesCS1A01G390800 chr6A 517241470 517243276 1806 True 3088.000000 3088 97.511000 3578 5385 1 chr6A.!!$R2 1807
7 TraesCS1A01G390800 chr7A 665858609 665860421 1812 False 3081.000000 3081 97.354000 3575 5385 1 chr7A.!!$F2 1810
8 TraesCS1A01G390800 chr7A 68153044 68154852 1808 False 3079.000000 3079 97.403000 3578 5385 1 chr7A.!!$F1 1807
9 TraesCS1A01G390800 chr7A 732829958 732831766 1808 True 3079.000000 3079 97.403000 3578 5385 1 chr7A.!!$R3 1807
10 TraesCS1A01G390800 chr7A 45643092 45644900 1808 True 3068.000000 3068 97.293000 3578 5385 1 chr7A.!!$R1 1807
11 TraesCS1A01G390800 chr1B 642526859 642529547 2688 False 1229.666667 2545 92.671333 884 3523 3 chr1B.!!$F3 2639
12 TraesCS1A01G390800 chr1B 642617345 642621028 3683 False 615.666667 1175 89.408000 1799 3523 3 chr1B.!!$F4 1724
13 TraesCS1A01G390800 chr1B 642637066 642640146 3080 False 520.500000 619 84.292000 923 3005 2 chr1B.!!$F5 2082
14 TraesCS1A01G390800 chr1D 465811825 465814059 2234 False 983.000000 987 89.000500 691 3005 2 chr1D.!!$F2 2314
15 TraesCS1A01G390800 chr1D 465820818 465822280 1462 False 373.500000 468 81.222500 963 2645 2 chr1D.!!$F3 1682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 418 0.107703 GAATGAGGTGATGTGCGGGA 60.108 55.0 0.00 0.0 0.0 5.14 F
963 977 0.249073 AGTACAGCGGCATCGATCAC 60.249 55.0 1.45 0.0 39.0 3.06 F
2104 3709 0.475044 ACGTCAACCAAGGGGCTAAA 59.525 50.0 0.00 0.0 37.9 1.85 F
2856 6533 0.259065 ACAGATAGAGTCGGAGGCCA 59.741 55.0 5.01 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1607 0.036164 TGATTTGACGTGGTCCTGGG 59.964 55.0 0.00 0.0 0.00 4.45 R
2496 6163 0.395311 CCTCCTGCATGTGAGCCAAT 60.395 55.0 0.00 0.0 0.00 3.16 R
3026 6707 0.322008 GGAGCTCCAACACCTCCAAG 60.322 60.0 28.43 0.0 43.63 3.61 R
4480 8167 0.104725 GGGAGATCCTGGGAGTGGAT 60.105 60.0 0.00 0.0 46.05 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 8.674263 TTTGATGAACATTTGCTTAAATTGGT 57.326 26.923 0.00 0.00 0.00 3.67
121 122 8.674263 TTGATGAACATTTGCTTAAATTGGTT 57.326 26.923 0.00 0.00 0.00 3.67
122 123 9.770097 TTGATGAACATTTGCTTAAATTGGTTA 57.230 25.926 0.00 0.00 0.00 2.85
123 124 9.770097 TGATGAACATTTGCTTAAATTGGTTAA 57.230 25.926 0.00 0.00 0.00 2.01
125 126 9.777297 ATGAACATTTGCTTAAATTGGTTAACT 57.223 25.926 5.42 0.00 0.00 2.24
142 143 8.359060 TGGTTAACTATTTGTTGAACATTTGC 57.641 30.769 5.42 0.00 37.01 3.68
143 144 8.200792 TGGTTAACTATTTGTTGAACATTTGCT 58.799 29.630 5.42 0.00 37.01 3.91
144 145 9.040939 GGTTAACTATTTGTTGAACATTTGCTT 57.959 29.630 5.42 0.00 39.55 3.91
154 155 9.932699 TTGTTGAACATTTGCTTAAATTTGATG 57.067 25.926 0.00 0.00 0.00 3.07
155 156 9.322773 TGTTGAACATTTGCTTAAATTTGATGA 57.677 25.926 0.00 0.00 0.00 2.92
158 159 9.545105 TGAACATTTGCTTAAATTTGATGAACT 57.455 25.926 0.00 0.00 0.00 3.01
183 184 5.476091 TTTTTCCAAGTTTGTGAACCTGT 57.524 34.783 0.00 0.00 36.39 4.00
184 185 5.476091 TTTTCCAAGTTTGTGAACCTGTT 57.524 34.783 0.00 0.00 36.39 3.16
185 186 5.476091 TTTCCAAGTTTGTGAACCTGTTT 57.524 34.783 0.00 0.00 36.39 2.83
186 187 4.712122 TCCAAGTTTGTGAACCTGTTTC 57.288 40.909 0.00 0.00 36.39 2.78
187 188 4.082845 TCCAAGTTTGTGAACCTGTTTCA 58.917 39.130 0.00 0.00 42.26 2.69
188 189 4.524714 TCCAAGTTTGTGAACCTGTTTCAA 59.475 37.500 0.00 0.00 46.09 2.69
189 190 5.011125 TCCAAGTTTGTGAACCTGTTTCAAA 59.989 36.000 0.00 8.90 46.09 2.69
190 191 5.698545 CCAAGTTTGTGAACCTGTTTCAAAA 59.301 36.000 12.36 0.00 46.09 2.44
191 192 6.347321 CCAAGTTTGTGAACCTGTTTCAAAAC 60.347 38.462 12.87 12.87 46.09 2.43
192 193 5.234752 AGTTTGTGAACCTGTTTCAAAACC 58.765 37.500 15.12 1.57 46.09 3.27
193 194 3.495670 TGTGAACCTGTTTCAAAACCG 57.504 42.857 3.33 0.00 46.09 4.44
194 195 3.082548 TGTGAACCTGTTTCAAAACCGA 58.917 40.909 3.33 0.00 46.09 4.69
195 196 3.697045 TGTGAACCTGTTTCAAAACCGAT 59.303 39.130 3.33 0.00 46.09 4.18
196 197 4.041723 GTGAACCTGTTTCAAAACCGATG 58.958 43.478 3.33 0.00 46.09 3.84
197 198 3.948473 TGAACCTGTTTCAAAACCGATGA 59.052 39.130 3.33 0.00 41.51 2.92
198 199 4.399618 TGAACCTGTTTCAAAACCGATGAA 59.600 37.500 3.33 0.00 41.51 2.57
199 200 4.301637 ACCTGTTTCAAAACCGATGAAC 57.698 40.909 3.33 0.00 36.57 3.18
200 201 3.951680 ACCTGTTTCAAAACCGATGAACT 59.048 39.130 3.33 0.00 36.57 3.01
201 202 4.401202 ACCTGTTTCAAAACCGATGAACTT 59.599 37.500 3.33 0.00 36.57 2.66
202 203 5.105513 ACCTGTTTCAAAACCGATGAACTTT 60.106 36.000 3.33 0.00 36.57 2.66
203 204 5.810074 CCTGTTTCAAAACCGATGAACTTTT 59.190 36.000 3.33 0.00 36.57 2.27
204 205 6.312672 CCTGTTTCAAAACCGATGAACTTTTT 59.687 34.615 3.33 0.00 36.57 1.94
296 297 8.870160 TTCATGAAGTATTTTTGAGGTTTGTG 57.130 30.769 3.38 0.00 0.00 3.33
297 298 8.231692 TCATGAAGTATTTTTGAGGTTTGTGA 57.768 30.769 0.00 0.00 0.00 3.58
298 299 8.690884 TCATGAAGTATTTTTGAGGTTTGTGAA 58.309 29.630 0.00 0.00 0.00 3.18
299 300 8.755018 CATGAAGTATTTTTGAGGTTTGTGAAC 58.245 33.333 0.00 0.00 34.96 3.18
300 301 8.062065 TGAAGTATTTTTGAGGTTTGTGAACT 57.938 30.769 0.00 0.00 36.03 3.01
301 302 8.527810 TGAAGTATTTTTGAGGTTTGTGAACTT 58.472 29.630 0.00 0.00 36.03 2.66
302 303 9.366216 GAAGTATTTTTGAGGTTTGTGAACTTT 57.634 29.630 0.00 0.00 36.03 2.66
375 376 9.694137 TTTTTCCTTACTTTTTCGAAAGTCAAA 57.306 25.926 10.98 1.70 41.67 2.69
376 377 9.863845 TTTTCCTTACTTTTTCGAAAGTCAAAT 57.136 25.926 10.98 0.00 41.67 2.32
377 378 8.850454 TTCCTTACTTTTTCGAAAGTCAAATG 57.150 30.769 10.98 1.22 41.67 2.32
378 379 7.992008 TCCTTACTTTTTCGAAAGTCAAATGT 58.008 30.769 10.98 6.94 41.67 2.71
379 380 8.126700 TCCTTACTTTTTCGAAAGTCAAATGTC 58.873 33.333 10.98 0.00 41.67 3.06
380 381 7.913297 CCTTACTTTTTCGAAAGTCAAATGTCA 59.087 33.333 10.98 0.00 41.67 3.58
381 382 9.284594 CTTACTTTTTCGAAAGTCAAATGTCAA 57.715 29.630 10.98 0.00 41.67 3.18
382 383 7.506296 ACTTTTTCGAAAGTCAAATGTCAAC 57.494 32.000 10.98 0.00 38.54 3.18
383 384 6.530181 ACTTTTTCGAAAGTCAAATGTCAACC 59.470 34.615 10.98 0.00 38.54 3.77
384 385 5.568685 TTTCGAAAGTCAAATGTCAACCA 57.431 34.783 6.47 0.00 0.00 3.67
385 386 4.811555 TCGAAAGTCAAATGTCAACCAG 57.188 40.909 0.00 0.00 0.00 4.00
386 387 4.196193 TCGAAAGTCAAATGTCAACCAGT 58.804 39.130 0.00 0.00 0.00 4.00
387 388 4.272504 TCGAAAGTCAAATGTCAACCAGTC 59.727 41.667 0.00 0.00 0.00 3.51
388 389 4.035091 CGAAAGTCAAATGTCAACCAGTCA 59.965 41.667 0.00 0.00 0.00 3.41
389 390 5.448496 CGAAAGTCAAATGTCAACCAGTCAA 60.448 40.000 0.00 0.00 0.00 3.18
390 391 4.900635 AGTCAAATGTCAACCAGTCAAC 57.099 40.909 0.00 0.00 0.00 3.18
391 392 3.632145 AGTCAAATGTCAACCAGTCAACC 59.368 43.478 0.00 0.00 0.00 3.77
392 393 2.616376 TCAAATGTCAACCAGTCAACCG 59.384 45.455 0.00 0.00 0.00 4.44
393 394 0.951558 AATGTCAACCAGTCAACCGC 59.048 50.000 0.00 0.00 0.00 5.68
394 395 1.227999 ATGTCAACCAGTCAACCGCG 61.228 55.000 0.00 0.00 0.00 6.46
395 396 1.593209 GTCAACCAGTCAACCGCGA 60.593 57.895 8.23 0.00 0.00 5.87
396 397 0.949105 GTCAACCAGTCAACCGCGAT 60.949 55.000 8.23 0.00 0.00 4.58
397 398 0.669318 TCAACCAGTCAACCGCGATC 60.669 55.000 8.23 0.00 0.00 3.69
398 399 1.736645 AACCAGTCAACCGCGATCG 60.737 57.895 11.69 11.69 0.00 3.69
399 400 2.149803 AACCAGTCAACCGCGATCGA 62.150 55.000 21.57 0.00 38.10 3.59
400 401 1.445410 CCAGTCAACCGCGATCGAA 60.445 57.895 21.57 0.00 38.10 3.71
401 402 0.806102 CCAGTCAACCGCGATCGAAT 60.806 55.000 21.57 0.00 38.10 3.34
402 403 0.298707 CAGTCAACCGCGATCGAATG 59.701 55.000 21.57 11.11 38.10 2.67
403 404 0.172578 AGTCAACCGCGATCGAATGA 59.827 50.000 21.57 13.28 38.10 2.57
404 405 0.572590 GTCAACCGCGATCGAATGAG 59.427 55.000 21.57 5.10 38.10 2.90
405 406 0.527600 TCAACCGCGATCGAATGAGG 60.528 55.000 21.57 14.86 38.10 3.86
406 407 0.806102 CAACCGCGATCGAATGAGGT 60.806 55.000 21.57 15.50 38.10 3.85
407 408 0.806102 AACCGCGATCGAATGAGGTG 60.806 55.000 21.57 0.00 38.10 4.00
408 409 1.065764 CCGCGATCGAATGAGGTGA 59.934 57.895 21.57 0.00 38.10 4.02
409 410 0.319040 CCGCGATCGAATGAGGTGAT 60.319 55.000 21.57 0.00 38.10 3.06
410 411 0.780596 CGCGATCGAATGAGGTGATG 59.219 55.000 21.57 0.00 38.10 3.07
411 412 1.858091 GCGATCGAATGAGGTGATGT 58.142 50.000 21.57 0.00 0.00 3.06
412 413 1.524355 GCGATCGAATGAGGTGATGTG 59.476 52.381 21.57 0.00 0.00 3.21
413 414 1.524355 CGATCGAATGAGGTGATGTGC 59.476 52.381 10.26 0.00 0.00 4.57
414 415 1.524355 GATCGAATGAGGTGATGTGCG 59.476 52.381 0.00 0.00 0.00 5.34
415 416 0.460109 TCGAATGAGGTGATGTGCGG 60.460 55.000 0.00 0.00 0.00 5.69
416 417 1.431488 CGAATGAGGTGATGTGCGGG 61.431 60.000 0.00 0.00 0.00 6.13
417 418 0.107703 GAATGAGGTGATGTGCGGGA 60.108 55.000 0.00 0.00 0.00 5.14
418 419 0.392998 AATGAGGTGATGTGCGGGAC 60.393 55.000 0.00 0.00 0.00 4.46
447 448 4.077188 GCGACGTGCCAGACAAGC 62.077 66.667 0.00 0.00 37.76 4.01
448 449 3.767230 CGACGTGCCAGACAAGCG 61.767 66.667 0.00 0.00 0.00 4.68
449 450 2.355837 GACGTGCCAGACAAGCGA 60.356 61.111 0.00 0.00 0.00 4.93
450 451 1.954146 GACGTGCCAGACAAGCGAA 60.954 57.895 0.00 0.00 0.00 4.70
451 452 2.159272 GACGTGCCAGACAAGCGAAC 62.159 60.000 0.00 0.00 0.00 3.95
452 453 2.551270 GTGCCAGACAAGCGAACG 59.449 61.111 0.00 0.00 0.00 3.95
453 454 1.954146 GTGCCAGACAAGCGAACGA 60.954 57.895 0.00 0.00 0.00 3.85
454 455 1.664649 TGCCAGACAAGCGAACGAG 60.665 57.895 0.00 0.00 0.00 4.18
455 456 2.383527 GCCAGACAAGCGAACGAGG 61.384 63.158 0.00 0.00 0.00 4.63
456 457 2.383527 CCAGACAAGCGAACGAGGC 61.384 63.158 0.00 0.00 0.00 4.70
457 458 2.430921 AGACAAGCGAACGAGGCG 60.431 61.111 0.00 0.00 35.00 5.52
458 459 2.430244 GACAAGCGAACGAGGCGA 60.430 61.111 0.00 0.00 35.00 5.54
459 460 2.717809 GACAAGCGAACGAGGCGAC 61.718 63.158 0.00 0.00 35.00 5.19
460 461 3.479269 CAAGCGAACGAGGCGACC 61.479 66.667 0.00 0.00 35.00 4.79
461 462 4.736896 AAGCGAACGAGGCGACCC 62.737 66.667 0.00 0.00 35.00 4.46
464 465 4.796231 CGAACGAGGCGACCCTGG 62.796 72.222 0.00 0.00 43.12 4.45
465 466 4.452733 GAACGAGGCGACCCTGGG 62.453 72.222 12.28 12.28 43.12 4.45
527 528 4.683432 GCTGAAGGCGCCCTATAG 57.317 61.111 26.15 17.52 31.13 1.31
528 529 1.004440 GCTGAAGGCGCCCTATAGG 60.004 63.158 26.15 12.27 39.47 2.57
545 546 3.412408 GGGCTCCCTCCCAAGTCC 61.412 72.222 0.00 0.00 45.82 3.85
546 547 3.412408 GGCTCCCTCCCAAGTCCC 61.412 72.222 0.00 0.00 0.00 4.46
547 548 3.412408 GCTCCCTCCCAAGTCCCC 61.412 72.222 0.00 0.00 0.00 4.81
548 549 2.124996 CTCCCTCCCAAGTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
549 550 1.308216 CTCCCTCCCAAGTCCCCAT 60.308 63.158 0.00 0.00 0.00 4.00
550 551 0.921256 CTCCCTCCCAAGTCCCCATT 60.921 60.000 0.00 0.00 0.00 3.16
551 552 0.423956 TCCCTCCCAAGTCCCCATTA 59.576 55.000 0.00 0.00 0.00 1.90
552 553 1.012049 TCCCTCCCAAGTCCCCATTAT 59.988 52.381 0.00 0.00 0.00 1.28
553 554 1.145738 CCCTCCCAAGTCCCCATTATG 59.854 57.143 0.00 0.00 0.00 1.90
554 555 1.145738 CCTCCCAAGTCCCCATTATGG 59.854 57.143 3.85 3.85 37.25 2.74
572 573 3.339547 GGCCAAGCCTTTGTACTCA 57.660 52.632 0.00 0.00 46.69 3.41
573 574 1.616159 GGCCAAGCCTTTGTACTCAA 58.384 50.000 0.00 0.00 46.69 3.02
574 575 1.269723 GGCCAAGCCTTTGTACTCAAC 59.730 52.381 0.00 0.00 46.69 3.18
575 576 1.069227 GCCAAGCCTTTGTACTCAACG 60.069 52.381 0.00 0.00 32.93 4.10
576 577 2.218603 CCAAGCCTTTGTACTCAACGT 58.781 47.619 0.00 0.00 32.93 3.99
577 578 2.032030 CCAAGCCTTTGTACTCAACGTG 60.032 50.000 0.00 0.00 32.93 4.49
578 579 2.869801 CAAGCCTTTGTACTCAACGTGA 59.130 45.455 0.00 0.00 32.93 4.35
579 580 3.402628 AGCCTTTGTACTCAACGTGAT 57.597 42.857 0.00 0.00 32.93 3.06
580 581 3.740115 AGCCTTTGTACTCAACGTGATT 58.260 40.909 0.00 0.00 32.93 2.57
581 582 3.498397 AGCCTTTGTACTCAACGTGATTG 59.502 43.478 0.00 0.00 39.94 2.67
582 583 3.810373 CCTTTGTACTCAACGTGATTGC 58.190 45.455 0.00 0.00 38.29 3.56
583 584 3.364964 CCTTTGTACTCAACGTGATTGCC 60.365 47.826 0.00 0.00 38.29 4.52
584 585 2.535012 TGTACTCAACGTGATTGCCA 57.465 45.000 0.00 0.00 38.29 4.92
585 586 2.412870 TGTACTCAACGTGATTGCCAG 58.587 47.619 0.00 0.00 38.29 4.85
586 587 2.036604 TGTACTCAACGTGATTGCCAGA 59.963 45.455 0.00 0.00 38.29 3.86
587 588 1.800805 ACTCAACGTGATTGCCAGAG 58.199 50.000 0.00 0.00 38.29 3.35
588 589 1.081892 CTCAACGTGATTGCCAGAGG 58.918 55.000 0.00 0.00 38.29 3.69
589 590 0.684535 TCAACGTGATTGCCAGAGGA 59.315 50.000 0.00 0.00 38.29 3.71
590 591 1.071542 TCAACGTGATTGCCAGAGGAA 59.928 47.619 0.00 0.00 38.29 3.36
591 592 1.879380 CAACGTGATTGCCAGAGGAAA 59.121 47.619 0.00 0.00 0.00 3.13
592 593 1.813513 ACGTGATTGCCAGAGGAAAG 58.186 50.000 0.00 0.00 0.00 2.62
593 594 1.347707 ACGTGATTGCCAGAGGAAAGA 59.652 47.619 0.00 0.00 0.00 2.52
594 595 2.224523 ACGTGATTGCCAGAGGAAAGAA 60.225 45.455 0.00 0.00 0.00 2.52
595 596 2.813754 CGTGATTGCCAGAGGAAAGAAA 59.186 45.455 0.00 0.00 0.00 2.52
596 597 3.253188 CGTGATTGCCAGAGGAAAGAAAA 59.747 43.478 0.00 0.00 0.00 2.29
597 598 4.261572 CGTGATTGCCAGAGGAAAGAAAAA 60.262 41.667 0.00 0.00 0.00 1.94
615 616 2.969443 AAAATCTGACCGACGCAAAG 57.031 45.000 0.00 0.00 0.00 2.77
616 617 1.878953 AAATCTGACCGACGCAAAGT 58.121 45.000 0.00 0.00 0.00 2.66
617 618 1.878953 AATCTGACCGACGCAAAGTT 58.121 45.000 0.00 0.00 0.00 2.66
618 619 1.878953 ATCTGACCGACGCAAAGTTT 58.121 45.000 0.00 0.00 0.00 2.66
619 620 2.512485 TCTGACCGACGCAAAGTTTA 57.488 45.000 0.00 0.00 0.00 2.01
620 621 3.034721 TCTGACCGACGCAAAGTTTAT 57.965 42.857 0.00 0.00 0.00 1.40
621 622 3.395639 TCTGACCGACGCAAAGTTTATT 58.604 40.909 0.00 0.00 0.00 1.40
622 623 3.810941 TCTGACCGACGCAAAGTTTATTT 59.189 39.130 0.00 0.00 0.00 1.40
623 624 4.273969 TCTGACCGACGCAAAGTTTATTTT 59.726 37.500 0.00 0.00 0.00 1.82
624 625 4.529446 TGACCGACGCAAAGTTTATTTTC 58.471 39.130 0.00 0.00 0.00 2.29
625 626 4.035324 TGACCGACGCAAAGTTTATTTTCA 59.965 37.500 0.00 0.00 0.00 2.69
626 627 4.533222 ACCGACGCAAAGTTTATTTTCAG 58.467 39.130 0.00 0.00 0.00 3.02
627 628 3.911964 CCGACGCAAAGTTTATTTTCAGG 59.088 43.478 0.00 0.00 0.00 3.86
628 629 4.533222 CGACGCAAAGTTTATTTTCAGGT 58.467 39.130 0.00 0.00 0.00 4.00
629 630 5.334260 CCGACGCAAAGTTTATTTTCAGGTA 60.334 40.000 0.00 0.00 0.00 3.08
630 631 6.311723 CGACGCAAAGTTTATTTTCAGGTAT 58.688 36.000 0.00 0.00 0.00 2.73
631 632 6.464834 CGACGCAAAGTTTATTTTCAGGTATC 59.535 38.462 0.00 0.00 0.00 2.24
632 633 7.448748 ACGCAAAGTTTATTTTCAGGTATCT 57.551 32.000 0.00 0.00 0.00 1.98
633 634 7.305474 ACGCAAAGTTTATTTTCAGGTATCTG 58.695 34.615 0.00 0.00 42.21 2.90
648 649 6.484643 TCAGGTATCTGAAGAATAGCAAATGC 59.515 38.462 2.30 0.00 46.08 3.56
649 650 6.565435 CAGGTATCTGAAGAATAGCAAATGCG 60.565 42.308 0.00 0.00 44.01 4.73
650 651 8.637799 CAGGTATCTGAAGAATAGCAAATGCGA 61.638 40.741 0.00 0.00 44.01 5.10
665 666 7.828685 GCAAATGCGAAAAACTATAGAGATC 57.171 36.000 6.78 0.00 0.00 2.75
666 667 7.634522 GCAAATGCGAAAAACTATAGAGATCT 58.365 34.615 6.78 0.00 0.00 2.75
667 668 7.585573 GCAAATGCGAAAAACTATAGAGATCTG 59.414 37.037 6.78 0.00 0.00 2.90
668 669 7.721286 AATGCGAAAAACTATAGAGATCTGG 57.279 36.000 6.78 0.00 0.00 3.86
669 670 5.050490 TGCGAAAAACTATAGAGATCTGGC 58.950 41.667 6.78 2.50 0.00 4.85
670 671 5.163405 TGCGAAAAACTATAGAGATCTGGCT 60.163 40.000 6.78 0.00 0.00 4.75
671 672 5.176590 GCGAAAAACTATAGAGATCTGGCTG 59.823 44.000 6.78 0.00 0.00 4.85
672 673 5.694006 CGAAAAACTATAGAGATCTGGCTGG 59.306 44.000 6.78 0.00 0.00 4.85
673 674 6.567602 AAAAACTATAGAGATCTGGCTGGT 57.432 37.500 6.78 0.00 0.00 4.00
674 675 7.470147 CGAAAAACTATAGAGATCTGGCTGGTA 60.470 40.741 6.78 0.00 0.00 3.25
675 676 6.909550 AAACTATAGAGATCTGGCTGGTAG 57.090 41.667 6.78 2.59 0.00 3.18
676 677 4.929479 ACTATAGAGATCTGGCTGGTAGG 58.071 47.826 6.78 0.00 0.00 3.18
677 678 2.685106 TAGAGATCTGGCTGGTAGGG 57.315 55.000 0.00 0.00 0.00 3.53
678 679 0.639392 AGAGATCTGGCTGGTAGGGT 59.361 55.000 0.00 0.00 0.00 4.34
679 680 1.860240 AGAGATCTGGCTGGTAGGGTA 59.140 52.381 0.00 0.00 0.00 3.69
680 681 1.964933 GAGATCTGGCTGGTAGGGTAC 59.035 57.143 0.00 0.00 0.00 3.34
681 682 1.291033 AGATCTGGCTGGTAGGGTACA 59.709 52.381 0.00 0.00 0.00 2.90
682 683 2.090494 AGATCTGGCTGGTAGGGTACAT 60.090 50.000 0.00 0.00 0.00 2.29
683 684 2.263895 TCTGGCTGGTAGGGTACATT 57.736 50.000 0.00 0.00 0.00 2.71
684 685 2.557869 TCTGGCTGGTAGGGTACATTT 58.442 47.619 0.00 0.00 0.00 2.32
685 686 2.916934 TCTGGCTGGTAGGGTACATTTT 59.083 45.455 0.00 0.00 0.00 1.82
686 687 4.105577 TCTGGCTGGTAGGGTACATTTTA 58.894 43.478 0.00 0.00 0.00 1.52
687 688 4.080751 TCTGGCTGGTAGGGTACATTTTAC 60.081 45.833 0.00 0.00 0.00 2.01
688 689 3.054213 TGGCTGGTAGGGTACATTTTACC 60.054 47.826 0.00 1.63 36.84 2.85
715 716 6.374578 GCAAGTTCATTTCCAAGAGTCTAAC 58.625 40.000 0.00 0.00 0.00 2.34
736 737 3.195396 ACACCAACAAACAACAAGAGCAT 59.805 39.130 0.00 0.00 0.00 3.79
739 740 5.809562 CACCAACAAACAACAAGAGCATAAA 59.190 36.000 0.00 0.00 0.00 1.40
747 749 6.017400 ACAACAAGAGCATAAATCCAACTG 57.983 37.500 0.00 0.00 0.00 3.16
807 818 2.109126 GTTGGCGGCCTGCTCTAAG 61.109 63.158 21.46 0.00 45.43 2.18
853 864 2.512515 GGCTTAGCACGGCAGGAG 60.513 66.667 6.53 0.00 0.00 3.69
854 865 3.198489 GCTTAGCACGGCAGGAGC 61.198 66.667 0.00 0.00 41.10 4.70
895 906 6.712547 GCAGTTATTGGCTCATTACCTCTTAT 59.287 38.462 0.00 0.00 0.00 1.73
963 977 0.249073 AGTACAGCGGCATCGATCAC 60.249 55.000 1.45 0.00 39.00 3.06
1433 1573 7.120726 CCACTAGAAAAGTTATTTGGTCCGATT 59.879 37.037 0.00 0.00 35.76 3.34
1447 1607 3.808174 GGTCCGATTAATGAGTAAGTGCC 59.192 47.826 0.00 0.00 0.00 5.01
1470 1630 0.872388 GGACCACGTCAAATCACACC 59.128 55.000 0.00 0.00 33.68 4.16
1536 2520 3.543680 TTTTTGCGGGTGATTTTGGAA 57.456 38.095 0.00 0.00 0.00 3.53
1537 2521 2.517650 TTTGCGGGTGATTTTGGAAC 57.482 45.000 0.00 0.00 0.00 3.62
1538 2522 1.403814 TTGCGGGTGATTTTGGAACA 58.596 45.000 0.00 0.00 0.00 3.18
1558 2910 5.116069 ACACCATTGTTTGATTCGTTACC 57.884 39.130 0.00 0.00 28.43 2.85
1649 3036 3.371285 GCACCGAATTAGTGGAGAAAGAC 59.629 47.826 9.48 0.00 35.71 3.01
1686 3075 5.991328 ATGCTAAATACGGTCTTCACATG 57.009 39.130 0.00 0.00 0.00 3.21
1689 3078 6.112734 TGCTAAATACGGTCTTCACATGAAT 58.887 36.000 0.00 0.00 33.01 2.57
1691 3080 7.766738 TGCTAAATACGGTCTTCACATGAATTA 59.233 33.333 0.00 0.00 33.01 1.40
1692 3081 8.276325 GCTAAATACGGTCTTCACATGAATTAG 58.724 37.037 0.00 0.08 33.01 1.73
1693 3082 9.314321 CTAAATACGGTCTTCACATGAATTAGT 57.686 33.333 0.00 0.00 33.01 2.24
1695 3084 4.253685 ACGGTCTTCACATGAATTAGTGG 58.746 43.478 0.00 0.00 36.43 4.00
1696 3085 3.623060 CGGTCTTCACATGAATTAGTGGG 59.377 47.826 0.00 0.00 36.43 4.61
1697 3086 4.589908 GGTCTTCACATGAATTAGTGGGT 58.410 43.478 0.00 0.00 36.43 4.51
1700 3089 2.722094 TCACATGAATTAGTGGGTGCC 58.278 47.619 0.00 0.00 36.43 5.01
1817 3317 8.439993 TGGCGCAAATAGTTGAAAAGTATATA 57.560 30.769 10.83 0.00 41.43 0.86
1880 3380 6.405065 CCAATCACCCACATGTCTTGAAATAG 60.405 42.308 0.00 0.00 0.00 1.73
1882 3382 4.012374 CACCCACATGTCTTGAAATAGCT 58.988 43.478 0.00 0.00 0.00 3.32
1883 3383 4.012374 ACCCACATGTCTTGAAATAGCTG 58.988 43.478 0.00 0.00 0.00 4.24
1884 3384 4.012374 CCCACATGTCTTGAAATAGCTGT 58.988 43.478 0.00 0.00 0.00 4.40
1972 3505 1.066908 CGGAAGACATGAGAGAGCTCC 59.933 57.143 10.93 1.70 40.55 4.70
1979 3512 2.159170 ACATGAGAGAGCTCCGTTTAGC 60.159 50.000 10.93 0.00 40.55 3.09
1995 3528 8.951787 TCCGTTTAGCTGTAAATGTAATATGT 57.048 30.769 0.00 0.00 34.49 2.29
2104 3709 0.475044 ACGTCAACCAAGGGGCTAAA 59.525 50.000 0.00 0.00 37.90 1.85
2256 3864 5.994054 GCATCTGATGGAGACTAATTTAGCA 59.006 40.000 18.60 0.00 31.75 3.49
2856 6533 0.259065 ACAGATAGAGTCGGAGGCCA 59.741 55.000 5.01 0.00 0.00 5.36
3026 6707 3.373439 GGATGGCGAGCATGATTCTAATC 59.627 47.826 0.00 0.00 35.97 1.75
3057 6738 0.747255 GGAGCTCCGTATGCAAGAGA 59.253 55.000 19.06 0.00 0.00 3.10
3065 6746 1.133598 CGTATGCAAGAGACGGTGGTA 59.866 52.381 0.00 0.00 33.01 3.25
3259 6941 2.985896 TGTATTCAGTTGCAGGGCTAC 58.014 47.619 0.00 0.00 34.77 3.58
3260 6942 2.289565 GTATTCAGTTGCAGGGCTACC 58.710 52.381 0.00 0.00 35.09 3.18
3296 6979 5.074804 GGGGCGGGTATGTATTAGAAAAAT 58.925 41.667 0.00 0.00 0.00 1.82
3337 7020 2.073816 ACGAAACCATCTGCGGTAAAG 58.926 47.619 0.00 0.00 38.76 1.85
3338 7021 2.289195 ACGAAACCATCTGCGGTAAAGA 60.289 45.455 0.00 0.00 38.76 2.52
3343 7026 4.499037 ACCATCTGCGGTAAAGAAAAAC 57.501 40.909 0.00 0.00 37.57 2.43
3357 7040 5.791336 AAGAAAAACCATTGGAAGAGGTC 57.209 39.130 10.37 0.00 33.74 3.85
3377 7060 0.604578 ATTCTTGCAAAGCCGCATGT 59.395 45.000 0.00 0.00 45.70 3.21
3378 7061 0.318869 TTCTTGCAAAGCCGCATGTG 60.319 50.000 0.00 0.00 45.70 3.21
3379 7062 1.007038 CTTGCAAAGCCGCATGTGT 60.007 52.632 5.38 0.00 42.62 3.72
3386 7069 1.795170 AAGCCGCATGTGTTGTCCAC 61.795 55.000 5.38 0.00 44.78 4.02
3398 7081 1.535462 GTTGTCCACGACATTGAAGGG 59.465 52.381 0.00 0.00 42.40 3.95
3417 7100 0.533085 GGATTTCCCTAGGCGTCAGC 60.533 60.000 2.05 0.00 44.18 4.26
3439 7122 5.527582 AGCATTGTTCCAAGTATTATCGACC 59.472 40.000 0.00 0.00 0.00 4.79
3440 7123 5.527582 GCATTGTTCCAAGTATTATCGACCT 59.472 40.000 0.00 0.00 0.00 3.85
3453 7136 0.472471 TCGACCTTGGCTTTGAGGTT 59.528 50.000 0.00 0.00 46.01 3.50
3509 7192 2.351418 TCGCCTACAATGCTCGATTTTG 59.649 45.455 0.00 0.00 0.00 2.44
3523 7206 4.482386 TCGATTTTGTACGACTGGAAGAG 58.518 43.478 0.00 0.00 37.43 2.85
3524 7207 4.216902 TCGATTTTGTACGACTGGAAGAGA 59.783 41.667 0.00 0.00 37.43 3.10
3525 7208 4.559251 CGATTTTGTACGACTGGAAGAGAG 59.441 45.833 0.00 0.00 37.43 3.20
3526 7209 4.931661 TTTTGTACGACTGGAAGAGAGT 57.068 40.909 0.00 0.00 37.43 3.24
3527 7210 6.585695 ATTTTGTACGACTGGAAGAGAGTA 57.414 37.500 0.00 0.00 37.43 2.59
3528 7211 5.368256 TTTGTACGACTGGAAGAGAGTAC 57.632 43.478 0.00 0.00 38.56 2.73
3529 7212 4.283363 TGTACGACTGGAAGAGAGTACT 57.717 45.455 0.00 0.00 38.71 2.73
3530 7213 4.252073 TGTACGACTGGAAGAGAGTACTC 58.748 47.826 15.41 15.41 42.90 2.59
3531 7214 3.420300 ACGACTGGAAGAGAGTACTCA 57.580 47.619 24.44 2.60 44.79 3.41
3532 7215 3.075884 ACGACTGGAAGAGAGTACTCAC 58.924 50.000 24.44 18.23 44.79 3.51
3533 7216 3.244630 ACGACTGGAAGAGAGTACTCACT 60.245 47.826 24.44 20.24 44.79 3.41
3534 7217 3.126171 CGACTGGAAGAGAGTACTCACTG 59.874 52.174 24.44 13.39 44.79 3.66
3535 7218 3.426615 ACTGGAAGAGAGTACTCACTGG 58.573 50.000 24.44 15.37 44.79 4.00
3536 7219 3.074687 ACTGGAAGAGAGTACTCACTGGA 59.925 47.826 24.44 10.03 44.79 3.86
3537 7220 4.082845 CTGGAAGAGAGTACTCACTGGAA 58.917 47.826 24.44 11.16 44.79 3.53
3538 7221 4.082845 TGGAAGAGAGTACTCACTGGAAG 58.917 47.826 24.44 0.00 44.79 3.46
3539 7222 4.202577 TGGAAGAGAGTACTCACTGGAAGA 60.203 45.833 24.44 4.98 44.79 2.87
3540 7223 4.157105 GGAAGAGAGTACTCACTGGAAGAC 59.843 50.000 24.44 10.93 44.79 3.01
3541 7224 4.374689 AGAGAGTACTCACTGGAAGACA 57.625 45.455 24.44 0.00 44.79 3.41
3542 7225 4.076394 AGAGAGTACTCACTGGAAGACAC 58.924 47.826 24.44 0.00 44.79 3.67
3543 7226 3.158676 AGAGTACTCACTGGAAGACACC 58.841 50.000 24.44 0.00 37.43 4.16
3544 7227 2.891580 GAGTACTCACTGGAAGACACCA 59.108 50.000 18.20 0.00 37.43 4.17
3545 7228 2.628657 AGTACTCACTGGAAGACACCAC 59.371 50.000 0.00 0.00 37.43 4.16
3546 7229 0.759346 ACTCACTGGAAGACACCACC 59.241 55.000 0.00 0.00 37.43 4.61
3547 7230 0.758734 CTCACTGGAAGACACCACCA 59.241 55.000 0.00 0.00 37.43 4.17
3551 7234 2.348411 CTGGAAGACACCACCAGTTT 57.652 50.000 0.00 0.00 44.06 2.66
3552 7235 3.485463 CTGGAAGACACCACCAGTTTA 57.515 47.619 0.00 0.00 44.06 2.01
3553 7236 4.021102 CTGGAAGACACCACCAGTTTAT 57.979 45.455 0.00 0.00 44.06 1.40
3554 7237 3.750371 TGGAAGACACCACCAGTTTATG 58.250 45.455 0.00 0.00 34.77 1.90
3555 7238 3.392947 TGGAAGACACCACCAGTTTATGA 59.607 43.478 0.00 0.00 34.77 2.15
3556 7239 4.141367 TGGAAGACACCACCAGTTTATGAA 60.141 41.667 0.00 0.00 34.77 2.57
3557 7240 5.010282 GGAAGACACCACCAGTTTATGAAT 58.990 41.667 0.00 0.00 0.00 2.57
3558 7241 6.177610 GGAAGACACCACCAGTTTATGAATA 58.822 40.000 0.00 0.00 0.00 1.75
3559 7242 6.657541 GGAAGACACCACCAGTTTATGAATAA 59.342 38.462 0.00 0.00 0.00 1.40
3560 7243 7.361799 GGAAGACACCACCAGTTTATGAATAAC 60.362 40.741 0.00 0.00 0.00 1.89
3561 7244 6.779860 AGACACCACCAGTTTATGAATAACT 58.220 36.000 0.00 0.00 36.31 2.24
3562 7245 7.231467 AGACACCACCAGTTTATGAATAACTT 58.769 34.615 0.00 0.00 33.73 2.66
3563 7246 7.724061 AGACACCACCAGTTTATGAATAACTTT 59.276 33.333 0.00 0.00 33.73 2.66
3564 7247 8.927675 ACACCACCAGTTTATGAATAACTTTA 57.072 30.769 0.00 0.00 33.73 1.85
3565 7248 8.789762 ACACCACCAGTTTATGAATAACTTTAC 58.210 33.333 0.00 0.00 33.73 2.01
3566 7249 9.010029 CACCACCAGTTTATGAATAACTTTACT 57.990 33.333 0.00 0.00 33.73 2.24
3925 7612 5.939447 TCATCATTTCACCCACATAGCATA 58.061 37.500 0.00 0.00 0.00 3.14
4270 7957 3.565902 TGCATGTACAAAACGGACAATGA 59.434 39.130 0.00 0.00 0.00 2.57
4281 7968 3.872696 ACGGACAATGATAGCATGTTCA 58.127 40.909 0.00 0.00 34.26 3.18
4336 8023 2.039084 AGTTGCGGGAGAAAGTCTTCAT 59.961 45.455 0.00 0.00 33.64 2.57
4495 8182 1.348008 TGCCATCCACTCCCAGGATC 61.348 60.000 0.00 0.00 43.90 3.36
4696 8383 2.291209 TTCCGTACTGTGGGTCTACA 57.709 50.000 0.00 0.00 0.00 2.74
4824 8511 0.391597 TCCTTTTCGCTCTCGGTTGT 59.608 50.000 0.00 0.00 36.13 3.32
4842 8529 0.593128 GTTGCATCAAAGCGGACACT 59.407 50.000 0.00 0.00 37.31 3.55
4860 8547 0.530431 CTGCTGTTTTGGTTGGTGCC 60.530 55.000 0.00 0.00 0.00 5.01
4877 8564 2.192605 CCCTTTTGATCTTGGGCGG 58.807 57.895 0.00 0.00 32.49 6.13
4904 8591 8.842280 TCGTGTAAAATGTATTCCCATTTATCC 58.158 33.333 0.00 0.00 42.63 2.59
4960 8647 4.566987 GTCCCCTAGACAACAAGTACAAG 58.433 47.826 0.00 0.00 45.55 3.16
4975 8662 6.037172 ACAAGTACAAGTCATCACAAACAGTC 59.963 38.462 0.00 0.00 0.00 3.51
5164 8851 2.512896 AGACCAAGAGTATCCGTCCCTA 59.487 50.000 0.00 0.00 33.66 3.53
5211 8898 1.349357 GCCTTTTCCAGTCAGTCTCCT 59.651 52.381 0.00 0.00 0.00 3.69
5273 8960 5.163519 CCAGGAATGAAGTCAACACAAAACT 60.164 40.000 0.00 0.00 0.00 2.66
5372 9059 3.251484 ACTCCCATGAACCTCTCAAAGA 58.749 45.455 0.00 0.00 37.67 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 9.287373 ACCAATTTAAGCAAATGTTCATCAAAT 57.713 25.926 0.00 0.00 34.53 2.32
95 96 8.674263 ACCAATTTAAGCAAATGTTCATCAAA 57.326 26.923 0.00 0.00 34.53 2.69
96 97 8.674263 AACCAATTTAAGCAAATGTTCATCAA 57.326 26.923 0.00 0.00 34.53 2.57
97 98 9.770097 TTAACCAATTTAAGCAAATGTTCATCA 57.230 25.926 0.00 0.00 34.53 3.07
99 100 9.777297 AGTTAACCAATTTAAGCAAATGTTCAT 57.223 25.926 0.88 0.00 34.53 2.57
116 117 8.821894 GCAAATGTTCAACAAATAGTTAACCAA 58.178 29.630 0.88 0.00 38.74 3.67
117 118 8.200792 AGCAAATGTTCAACAAATAGTTAACCA 58.799 29.630 0.88 0.00 38.74 3.67
118 119 8.587952 AGCAAATGTTCAACAAATAGTTAACC 57.412 30.769 0.88 0.00 38.74 2.85
128 129 9.932699 CATCAAATTTAAGCAAATGTTCAACAA 57.067 25.926 0.00 0.00 34.53 2.83
129 130 9.322773 TCATCAAATTTAAGCAAATGTTCAACA 57.677 25.926 0.00 0.00 34.53 3.33
132 133 9.545105 AGTTCATCAAATTTAAGCAAATGTTCA 57.455 25.926 0.00 0.00 34.53 3.18
161 162 5.476091 ACAGGTTCACAAACTTGGAAAAA 57.524 34.783 5.57 0.00 44.44 1.94
162 163 5.476091 AACAGGTTCACAAACTTGGAAAA 57.524 34.783 5.57 0.00 44.44 2.29
163 164 5.011125 TGAAACAGGTTCACAAACTTGGAAA 59.989 36.000 0.00 0.00 44.44 3.13
164 165 4.524714 TGAAACAGGTTCACAAACTTGGAA 59.475 37.500 0.00 0.00 44.44 3.53
165 166 4.082845 TGAAACAGGTTCACAAACTTGGA 58.917 39.130 0.00 0.00 44.44 3.53
166 167 4.448537 TGAAACAGGTTCACAAACTTGG 57.551 40.909 0.00 0.00 44.44 3.61
167 168 6.347321 GGTTTTGAAACAGGTTCACAAACTTG 60.347 38.462 23.59 0.00 46.09 3.16
168 169 5.699001 GGTTTTGAAACAGGTTCACAAACTT 59.301 36.000 23.59 0.00 46.09 2.66
169 170 5.234752 GGTTTTGAAACAGGTTCACAAACT 58.765 37.500 23.59 0.00 46.09 2.66
170 171 4.090786 CGGTTTTGAAACAGGTTCACAAAC 59.909 41.667 20.02 20.02 46.09 2.93
171 172 4.022242 TCGGTTTTGAAACAGGTTCACAAA 60.022 37.500 0.00 7.01 46.09 2.83
172 173 3.506455 TCGGTTTTGAAACAGGTTCACAA 59.494 39.130 0.00 0.00 46.09 3.33
173 174 3.082548 TCGGTTTTGAAACAGGTTCACA 58.917 40.909 0.00 0.00 46.09 3.58
174 175 3.768468 TCGGTTTTGAAACAGGTTCAC 57.232 42.857 0.00 0.00 46.09 3.18
175 176 3.948473 TCATCGGTTTTGAAACAGGTTCA 59.052 39.130 0.00 0.00 44.74 3.18
176 177 4.561735 TCATCGGTTTTGAAACAGGTTC 57.438 40.909 8.68 0.00 40.63 3.62
177 178 4.401202 AGTTCATCGGTTTTGAAACAGGTT 59.599 37.500 8.68 0.00 40.63 3.50
178 179 3.951680 AGTTCATCGGTTTTGAAACAGGT 59.048 39.130 8.68 0.00 40.63 4.00
179 180 4.568152 AGTTCATCGGTTTTGAAACAGG 57.432 40.909 8.68 0.84 40.63 4.00
180 181 6.885735 AAAAGTTCATCGGTTTTGAAACAG 57.114 33.333 8.68 4.89 40.63 3.16
270 271 9.480053 CACAAACCTCAAAAATACTTCATGAAT 57.520 29.630 8.96 2.32 0.00 2.57
271 272 8.690884 TCACAAACCTCAAAAATACTTCATGAA 58.309 29.630 8.12 8.12 0.00 2.57
272 273 8.231692 TCACAAACCTCAAAAATACTTCATGA 57.768 30.769 0.00 0.00 0.00 3.07
273 274 8.755018 GTTCACAAACCTCAAAAATACTTCATG 58.245 33.333 0.00 0.00 0.00 3.07
274 275 8.695456 AGTTCACAAACCTCAAAAATACTTCAT 58.305 29.630 0.00 0.00 35.92 2.57
275 276 8.062065 AGTTCACAAACCTCAAAAATACTTCA 57.938 30.769 0.00 0.00 35.92 3.02
276 277 8.926715 AAGTTCACAAACCTCAAAAATACTTC 57.073 30.769 0.00 0.00 35.92 3.01
359 360 6.529829 TGGTTGACATTTGACTTTCGAAAAAG 59.470 34.615 12.41 3.55 46.11 2.27
360 361 6.390721 TGGTTGACATTTGACTTTCGAAAAA 58.609 32.000 12.41 3.61 0.00 1.94
361 362 5.955488 TGGTTGACATTTGACTTTCGAAAA 58.045 33.333 12.41 0.00 0.00 2.29
362 363 5.124776 ACTGGTTGACATTTGACTTTCGAAA 59.875 36.000 10.71 10.71 0.00 3.46
363 364 4.638421 ACTGGTTGACATTTGACTTTCGAA 59.362 37.500 0.00 0.00 0.00 3.71
364 365 4.196193 ACTGGTTGACATTTGACTTTCGA 58.804 39.130 0.00 0.00 0.00 3.71
365 366 4.035091 TGACTGGTTGACATTTGACTTTCG 59.965 41.667 0.00 0.00 0.00 3.46
366 367 5.499139 TGACTGGTTGACATTTGACTTTC 57.501 39.130 0.00 0.00 0.00 2.62
367 368 5.394115 GGTTGACTGGTTGACATTTGACTTT 60.394 40.000 0.00 0.00 0.00 2.66
368 369 4.097892 GGTTGACTGGTTGACATTTGACTT 59.902 41.667 0.00 0.00 0.00 3.01
369 370 3.632145 GGTTGACTGGTTGACATTTGACT 59.368 43.478 0.00 0.00 0.00 3.41
370 371 3.548014 CGGTTGACTGGTTGACATTTGAC 60.548 47.826 0.00 0.00 0.00 3.18
371 372 2.616376 CGGTTGACTGGTTGACATTTGA 59.384 45.455 0.00 0.00 0.00 2.69
372 373 2.858260 GCGGTTGACTGGTTGACATTTG 60.858 50.000 0.00 0.00 0.00 2.32
373 374 1.336755 GCGGTTGACTGGTTGACATTT 59.663 47.619 0.00 0.00 0.00 2.32
374 375 0.951558 GCGGTTGACTGGTTGACATT 59.048 50.000 0.00 0.00 0.00 2.71
375 376 1.227999 CGCGGTTGACTGGTTGACAT 61.228 55.000 0.00 0.00 0.00 3.06
376 377 1.885388 CGCGGTTGACTGGTTGACA 60.885 57.895 0.00 0.00 0.00 3.58
377 378 0.949105 ATCGCGGTTGACTGGTTGAC 60.949 55.000 6.13 0.00 0.00 3.18
378 379 0.669318 GATCGCGGTTGACTGGTTGA 60.669 55.000 6.13 0.00 0.00 3.18
379 380 1.787847 GATCGCGGTTGACTGGTTG 59.212 57.895 6.13 0.00 0.00 3.77
380 381 1.736645 CGATCGCGGTTGACTGGTT 60.737 57.895 6.13 0.00 0.00 3.67
381 382 2.126071 CGATCGCGGTTGACTGGT 60.126 61.111 6.13 0.00 0.00 4.00
382 383 0.806102 ATTCGATCGCGGTTGACTGG 60.806 55.000 9.33 0.00 38.28 4.00
383 384 0.298707 CATTCGATCGCGGTTGACTG 59.701 55.000 9.33 10.87 38.28 3.51
384 385 0.172578 TCATTCGATCGCGGTTGACT 59.827 50.000 9.33 0.11 38.28 3.41
385 386 0.572590 CTCATTCGATCGCGGTTGAC 59.427 55.000 9.33 0.00 38.28 3.18
386 387 0.527600 CCTCATTCGATCGCGGTTGA 60.528 55.000 11.09 4.85 38.28 3.18
387 388 0.806102 ACCTCATTCGATCGCGGTTG 60.806 55.000 11.09 2.03 38.28 3.77
388 389 0.806102 CACCTCATTCGATCGCGGTT 60.806 55.000 11.09 0.00 38.28 4.44
389 390 1.226974 CACCTCATTCGATCGCGGT 60.227 57.895 11.09 0.00 38.28 5.68
390 391 0.319040 ATCACCTCATTCGATCGCGG 60.319 55.000 11.09 7.84 38.28 6.46
391 392 0.780596 CATCACCTCATTCGATCGCG 59.219 55.000 11.09 0.00 39.35 5.87
392 393 1.524355 CACATCACCTCATTCGATCGC 59.476 52.381 11.09 0.00 0.00 4.58
393 394 1.524355 GCACATCACCTCATTCGATCG 59.476 52.381 9.36 9.36 0.00 3.69
394 395 1.524355 CGCACATCACCTCATTCGATC 59.476 52.381 0.00 0.00 0.00 3.69
395 396 1.575244 CGCACATCACCTCATTCGAT 58.425 50.000 0.00 0.00 0.00 3.59
396 397 0.460109 CCGCACATCACCTCATTCGA 60.460 55.000 0.00 0.00 0.00 3.71
397 398 1.431488 CCCGCACATCACCTCATTCG 61.431 60.000 0.00 0.00 0.00 3.34
398 399 0.107703 TCCCGCACATCACCTCATTC 60.108 55.000 0.00 0.00 0.00 2.67
399 400 0.392998 GTCCCGCACATCACCTCATT 60.393 55.000 0.00 0.00 0.00 2.57
400 401 1.221840 GTCCCGCACATCACCTCAT 59.778 57.895 0.00 0.00 0.00 2.90
401 402 2.662596 GTCCCGCACATCACCTCA 59.337 61.111 0.00 0.00 0.00 3.86
402 403 2.509336 CGTCCCGCACATCACCTC 60.509 66.667 0.00 0.00 0.00 3.85
403 404 2.994995 TCGTCCCGCACATCACCT 60.995 61.111 0.00 0.00 0.00 4.00
404 405 2.509336 CTCGTCCCGCACATCACC 60.509 66.667 0.00 0.00 0.00 4.02
405 406 3.188786 GCTCGTCCCGCACATCAC 61.189 66.667 0.00 0.00 0.00 3.06
406 407 4.794439 CGCTCGTCCCGCACATCA 62.794 66.667 0.00 0.00 0.00 3.07
407 408 4.492160 TCGCTCGTCCCGCACATC 62.492 66.667 0.00 0.00 0.00 3.06
408 409 4.796231 GTCGCTCGTCCCGCACAT 62.796 66.667 0.00 0.00 0.00 3.21
430 431 4.077188 GCTTGTCTGGCACGTCGC 62.077 66.667 0.00 0.00 41.28 5.19
431 432 3.767230 CGCTTGTCTGGCACGTCG 61.767 66.667 0.00 0.00 0.00 5.12
432 433 1.954146 TTCGCTTGTCTGGCACGTC 60.954 57.895 0.00 0.00 0.00 4.34
433 434 2.108157 TTCGCTTGTCTGGCACGT 59.892 55.556 0.00 0.00 0.00 4.49
434 435 2.551270 GTTCGCTTGTCTGGCACG 59.449 61.111 0.00 0.00 0.00 5.34
435 436 1.891060 CTCGTTCGCTTGTCTGGCAC 61.891 60.000 0.00 0.00 0.00 5.01
436 437 1.664649 CTCGTTCGCTTGTCTGGCA 60.665 57.895 0.00 0.00 0.00 4.92
437 438 2.383527 CCTCGTTCGCTTGTCTGGC 61.384 63.158 0.00 0.00 0.00 4.85
438 439 2.383527 GCCTCGTTCGCTTGTCTGG 61.384 63.158 0.00 0.00 0.00 3.86
439 440 2.720758 CGCCTCGTTCGCTTGTCTG 61.721 63.158 0.00 0.00 0.00 3.51
440 441 2.430921 CGCCTCGTTCGCTTGTCT 60.431 61.111 0.00 0.00 0.00 3.41
441 442 2.430244 TCGCCTCGTTCGCTTGTC 60.430 61.111 0.00 0.00 0.00 3.18
442 443 2.733593 GTCGCCTCGTTCGCTTGT 60.734 61.111 0.00 0.00 0.00 3.16
443 444 3.479269 GGTCGCCTCGTTCGCTTG 61.479 66.667 0.00 0.00 0.00 4.01
444 445 4.736896 GGGTCGCCTCGTTCGCTT 62.737 66.667 0.00 0.00 0.00 4.68
447 448 4.796231 CCAGGGTCGCCTCGTTCG 62.796 72.222 0.00 0.00 0.00 3.95
448 449 4.452733 CCCAGGGTCGCCTCGTTC 62.453 72.222 0.00 0.00 0.00 3.95
510 511 1.004440 CCTATAGGGCGCCTTCAGC 60.004 63.158 28.56 9.28 34.61 4.26
529 530 3.412408 GGGACTTGGGAGGGAGCC 61.412 72.222 0.00 0.00 0.00 4.70
530 531 3.412408 GGGGACTTGGGAGGGAGC 61.412 72.222 0.00 0.00 0.00 4.70
531 532 0.921256 AATGGGGACTTGGGAGGGAG 60.921 60.000 0.00 0.00 0.00 4.30
532 533 0.423956 TAATGGGGACTTGGGAGGGA 59.576 55.000 0.00 0.00 0.00 4.20
533 534 1.145738 CATAATGGGGACTTGGGAGGG 59.854 57.143 0.00 0.00 0.00 4.30
534 535 1.145738 CCATAATGGGGACTTGGGAGG 59.854 57.143 0.00 0.00 32.67 4.30
535 536 2.664402 CCATAATGGGGACTTGGGAG 57.336 55.000 0.00 0.00 32.67 4.30
555 556 1.069227 CGTTGAGTACAAAGGCTTGGC 60.069 52.381 0.00 0.00 37.77 4.52
556 557 2.032030 CACGTTGAGTACAAAGGCTTGG 60.032 50.000 0.00 0.00 39.18 3.61
557 558 2.869801 TCACGTTGAGTACAAAGGCTTG 59.130 45.455 0.00 0.00 39.18 4.01
558 559 3.188159 TCACGTTGAGTACAAAGGCTT 57.812 42.857 0.00 0.00 39.18 4.35
559 560 2.902705 TCACGTTGAGTACAAAGGCT 57.097 45.000 0.00 0.00 39.18 4.58
560 561 3.810373 CAATCACGTTGAGTACAAAGGC 58.190 45.455 0.00 0.00 40.37 4.35
561 562 3.364964 GGCAATCACGTTGAGTACAAAGG 60.365 47.826 0.00 0.00 40.37 3.11
562 563 3.249799 TGGCAATCACGTTGAGTACAAAG 59.750 43.478 0.00 0.00 40.37 2.77
563 564 3.206964 TGGCAATCACGTTGAGTACAAA 58.793 40.909 0.00 0.00 40.37 2.83
564 565 2.805671 CTGGCAATCACGTTGAGTACAA 59.194 45.455 0.00 0.00 40.37 2.41
565 566 2.036604 TCTGGCAATCACGTTGAGTACA 59.963 45.455 0.00 0.00 40.37 2.90
566 567 2.668457 CTCTGGCAATCACGTTGAGTAC 59.332 50.000 0.00 0.00 40.37 2.73
567 568 2.353704 CCTCTGGCAATCACGTTGAGTA 60.354 50.000 0.00 0.00 40.37 2.59
568 569 1.609061 CCTCTGGCAATCACGTTGAGT 60.609 52.381 0.00 0.00 40.37 3.41
569 570 1.081892 CCTCTGGCAATCACGTTGAG 58.918 55.000 0.00 0.00 40.37 3.02
570 571 0.684535 TCCTCTGGCAATCACGTTGA 59.315 50.000 0.00 0.00 40.37 3.18
571 572 1.522668 TTCCTCTGGCAATCACGTTG 58.477 50.000 0.00 0.00 40.90 4.10
572 573 2.154462 CTTTCCTCTGGCAATCACGTT 58.846 47.619 0.00 0.00 0.00 3.99
573 574 1.347707 TCTTTCCTCTGGCAATCACGT 59.652 47.619 0.00 0.00 0.00 4.49
574 575 2.099141 TCTTTCCTCTGGCAATCACG 57.901 50.000 0.00 0.00 0.00 4.35
575 576 4.853924 TTTTCTTTCCTCTGGCAATCAC 57.146 40.909 0.00 0.00 0.00 3.06
595 596 2.616842 ACTTTGCGTCGGTCAGATTTTT 59.383 40.909 0.00 0.00 0.00 1.94
596 597 2.218603 ACTTTGCGTCGGTCAGATTTT 58.781 42.857 0.00 0.00 0.00 1.82
597 598 1.878953 ACTTTGCGTCGGTCAGATTT 58.121 45.000 0.00 0.00 0.00 2.17
598 599 1.878953 AACTTTGCGTCGGTCAGATT 58.121 45.000 0.00 0.00 0.00 2.40
599 600 1.878953 AAACTTTGCGTCGGTCAGAT 58.121 45.000 0.00 0.00 0.00 2.90
600 601 2.512485 TAAACTTTGCGTCGGTCAGA 57.488 45.000 0.00 0.00 0.00 3.27
601 602 3.806316 AATAAACTTTGCGTCGGTCAG 57.194 42.857 0.00 0.00 0.00 3.51
602 603 4.035324 TGAAAATAAACTTTGCGTCGGTCA 59.965 37.500 0.00 0.00 0.00 4.02
603 604 4.529446 TGAAAATAAACTTTGCGTCGGTC 58.471 39.130 0.00 0.00 0.00 4.79
604 605 4.533222 CTGAAAATAAACTTTGCGTCGGT 58.467 39.130 0.00 0.00 0.00 4.69
605 606 3.911964 CCTGAAAATAAACTTTGCGTCGG 59.088 43.478 0.00 0.00 0.00 4.79
606 607 4.533222 ACCTGAAAATAAACTTTGCGTCG 58.467 39.130 0.00 0.00 0.00 5.12
607 608 7.481798 CAGATACCTGAAAATAAACTTTGCGTC 59.518 37.037 0.00 0.00 43.02 5.19
608 609 7.174253 TCAGATACCTGAAAATAAACTTTGCGT 59.826 33.333 0.00 0.00 45.74 5.24
609 610 7.526608 TCAGATACCTGAAAATAAACTTTGCG 58.473 34.615 0.00 0.00 45.74 4.85
622 623 7.012704 GCATTTGCTATTCTTCAGATACCTGAA 59.987 37.037 0.00 0.00 45.47 3.02
623 624 6.484643 GCATTTGCTATTCTTCAGATACCTGA 59.515 38.462 0.00 0.00 41.74 3.86
624 625 6.565435 CGCATTTGCTATTCTTCAGATACCTG 60.565 42.308 0.51 0.00 39.23 4.00
625 626 5.468072 CGCATTTGCTATTCTTCAGATACCT 59.532 40.000 0.51 0.00 39.32 3.08
626 627 5.466728 TCGCATTTGCTATTCTTCAGATACC 59.533 40.000 0.51 0.00 39.32 2.73
627 628 6.530913 TCGCATTTGCTATTCTTCAGATAC 57.469 37.500 0.51 0.00 39.32 2.24
628 629 7.552458 TTTCGCATTTGCTATTCTTCAGATA 57.448 32.000 0.51 0.00 39.32 1.98
629 630 6.441093 TTTCGCATTTGCTATTCTTCAGAT 57.559 33.333 0.51 0.00 39.32 2.90
630 631 5.878332 TTTCGCATTTGCTATTCTTCAGA 57.122 34.783 0.51 0.00 39.32 3.27
631 632 6.583806 AGTTTTTCGCATTTGCTATTCTTCAG 59.416 34.615 0.51 0.00 39.32 3.02
632 633 6.446318 AGTTTTTCGCATTTGCTATTCTTCA 58.554 32.000 0.51 0.00 39.32 3.02
633 634 6.934561 AGTTTTTCGCATTTGCTATTCTTC 57.065 33.333 0.51 0.00 39.32 2.87
634 635 9.722056 CTATAGTTTTTCGCATTTGCTATTCTT 57.278 29.630 0.51 0.00 39.32 2.52
635 636 9.109393 TCTATAGTTTTTCGCATTTGCTATTCT 57.891 29.630 0.00 0.00 39.32 2.40
636 637 9.374960 CTCTATAGTTTTTCGCATTTGCTATTC 57.625 33.333 0.00 0.00 39.32 1.75
637 638 9.109393 TCTCTATAGTTTTTCGCATTTGCTATT 57.891 29.630 0.00 0.00 39.32 1.73
638 639 8.662781 TCTCTATAGTTTTTCGCATTTGCTAT 57.337 30.769 0.00 0.00 39.32 2.97
639 640 8.662781 ATCTCTATAGTTTTTCGCATTTGCTA 57.337 30.769 0.00 0.00 39.32 3.49
640 641 6.985188 TCTCTATAGTTTTTCGCATTTGCT 57.015 33.333 0.00 0.00 39.32 3.91
641 642 7.585573 CAGATCTCTATAGTTTTTCGCATTTGC 59.414 37.037 0.00 0.00 37.78 3.68
642 643 8.066595 CCAGATCTCTATAGTTTTTCGCATTTG 58.933 37.037 0.00 0.00 0.00 2.32
643 644 7.254932 GCCAGATCTCTATAGTTTTTCGCATTT 60.255 37.037 0.00 0.00 0.00 2.32
644 645 6.203723 GCCAGATCTCTATAGTTTTTCGCATT 59.796 38.462 0.00 0.00 0.00 3.56
645 646 5.698545 GCCAGATCTCTATAGTTTTTCGCAT 59.301 40.000 0.00 0.00 0.00 4.73
646 647 5.050490 GCCAGATCTCTATAGTTTTTCGCA 58.950 41.667 0.00 0.00 0.00 5.10
647 648 5.176590 CAGCCAGATCTCTATAGTTTTTCGC 59.823 44.000 0.00 0.00 0.00 4.70
648 649 5.694006 CCAGCCAGATCTCTATAGTTTTTCG 59.306 44.000 0.00 0.00 0.00 3.46
649 650 6.587273 ACCAGCCAGATCTCTATAGTTTTTC 58.413 40.000 0.00 0.00 0.00 2.29
650 651 6.567602 ACCAGCCAGATCTCTATAGTTTTT 57.432 37.500 0.00 0.00 0.00 1.94
651 652 6.268847 CCTACCAGCCAGATCTCTATAGTTTT 59.731 42.308 0.00 0.00 0.00 2.43
652 653 5.777732 CCTACCAGCCAGATCTCTATAGTTT 59.222 44.000 0.00 0.00 0.00 2.66
653 654 5.329399 CCTACCAGCCAGATCTCTATAGTT 58.671 45.833 0.00 0.00 0.00 2.24
654 655 4.264172 CCCTACCAGCCAGATCTCTATAGT 60.264 50.000 0.00 0.00 0.00 2.12
655 656 4.264172 ACCCTACCAGCCAGATCTCTATAG 60.264 50.000 0.00 0.00 0.00 1.31
656 657 3.663136 ACCCTACCAGCCAGATCTCTATA 59.337 47.826 0.00 0.00 0.00 1.31
657 658 2.452823 ACCCTACCAGCCAGATCTCTAT 59.547 50.000 0.00 0.00 0.00 1.98
658 659 1.860240 ACCCTACCAGCCAGATCTCTA 59.140 52.381 0.00 0.00 0.00 2.43
659 660 0.639392 ACCCTACCAGCCAGATCTCT 59.361 55.000 0.00 0.00 0.00 3.10
660 661 1.964933 GTACCCTACCAGCCAGATCTC 59.035 57.143 0.00 0.00 0.00 2.75
661 662 1.291033 TGTACCCTACCAGCCAGATCT 59.709 52.381 0.00 0.00 0.00 2.75
662 663 1.789523 TGTACCCTACCAGCCAGATC 58.210 55.000 0.00 0.00 0.00 2.75
663 664 2.496679 ATGTACCCTACCAGCCAGAT 57.503 50.000 0.00 0.00 0.00 2.90
664 665 2.263895 AATGTACCCTACCAGCCAGA 57.736 50.000 0.00 0.00 0.00 3.86
665 666 3.366052 AAAATGTACCCTACCAGCCAG 57.634 47.619 0.00 0.00 0.00 4.85
666 667 3.054213 GGTAAAATGTACCCTACCAGCCA 60.054 47.826 0.00 0.00 34.99 4.75
667 668 3.548770 GGTAAAATGTACCCTACCAGCC 58.451 50.000 0.00 0.00 34.99 4.85
676 677 2.439409 ACTTGCCGGGTAAAATGTACC 58.561 47.619 2.18 0.00 36.88 3.34
677 678 3.502979 TGAACTTGCCGGGTAAAATGTAC 59.497 43.478 2.18 0.00 0.00 2.90
678 679 3.752665 TGAACTTGCCGGGTAAAATGTA 58.247 40.909 2.18 0.00 0.00 2.29
679 680 2.588620 TGAACTTGCCGGGTAAAATGT 58.411 42.857 2.18 0.00 0.00 2.71
680 681 3.866883 ATGAACTTGCCGGGTAAAATG 57.133 42.857 2.18 0.00 0.00 2.32
681 682 4.322424 GGAAATGAACTTGCCGGGTAAAAT 60.322 41.667 2.18 0.00 0.00 1.82
682 683 3.006003 GGAAATGAACTTGCCGGGTAAAA 59.994 43.478 2.18 0.00 0.00 1.52
683 684 2.559231 GGAAATGAACTTGCCGGGTAAA 59.441 45.455 2.18 0.00 0.00 2.01
684 685 2.164338 GGAAATGAACTTGCCGGGTAA 58.836 47.619 2.18 0.00 0.00 2.85
685 686 1.074084 TGGAAATGAACTTGCCGGGTA 59.926 47.619 2.18 0.00 0.00 3.69
686 687 0.178975 TGGAAATGAACTTGCCGGGT 60.179 50.000 2.18 0.00 0.00 5.28
687 688 0.965439 TTGGAAATGAACTTGCCGGG 59.035 50.000 2.18 0.00 0.00 5.73
688 689 1.885887 TCTTGGAAATGAACTTGCCGG 59.114 47.619 0.00 0.00 0.00 6.13
689 690 2.554032 ACTCTTGGAAATGAACTTGCCG 59.446 45.455 0.00 0.00 0.00 5.69
715 716 3.229276 TGCTCTTGTTGTTTGTTGGTG 57.771 42.857 0.00 0.00 0.00 4.17
736 737 2.937873 GCAGGCCGTACAGTTGGATTTA 60.938 50.000 0.00 0.00 0.00 1.40
739 740 1.078426 GCAGGCCGTACAGTTGGAT 60.078 57.895 0.00 0.00 0.00 3.41
747 749 1.515081 TGTTTTACTGCAGGCCGTAC 58.485 50.000 19.93 9.67 0.00 3.67
807 818 5.488341 ACATATACTCCACTGGTTGTTGTC 58.512 41.667 0.00 0.00 0.00 3.18
853 864 2.744768 GCCGCTGTGCAAGACTAGC 61.745 63.158 0.00 0.00 0.00 3.42
854 865 1.357258 CTGCCGCTGTGCAAGACTAG 61.357 60.000 0.00 0.00 41.51 2.57
895 906 8.780249 GCATCTACACTACCTTTAAGAACAAAA 58.220 33.333 0.00 0.00 0.00 2.44
912 926 3.486108 CGTACAAATCCTCGCATCTACAC 59.514 47.826 0.00 0.00 0.00 2.90
995 1009 0.039074 CCTGCCCGTCGTCATATCTC 60.039 60.000 0.00 0.00 0.00 2.75
1082 1096 9.754382 AAAACTCAAGAGAAACGTGTATTAGTA 57.246 29.630 3.73 0.00 0.00 1.82
1083 1097 8.658499 AAAACTCAAGAGAAACGTGTATTAGT 57.342 30.769 3.73 0.00 0.00 2.24
1084 1098 7.945178 CGAAAACTCAAGAGAAACGTGTATTAG 59.055 37.037 3.73 0.00 0.00 1.73
1090 1125 4.752224 CTCGAAAACTCAAGAGAAACGTG 58.248 43.478 3.73 2.38 32.84 4.49
1433 1573 2.504175 GTCCTGGGGCACTTACTCATTA 59.496 50.000 0.00 0.00 0.00 1.90
1447 1607 0.036164 TGATTTGACGTGGTCCTGGG 59.964 55.000 0.00 0.00 0.00 4.45
1470 1630 4.368874 TGTTGATAATTTGGATGCGTGG 57.631 40.909 0.00 0.00 0.00 4.94
1519 2503 1.067821 GTGTTCCAAAATCACCCGCAA 59.932 47.619 0.00 0.00 0.00 4.85
1520 2504 0.671251 GTGTTCCAAAATCACCCGCA 59.329 50.000 0.00 0.00 0.00 5.69
1521 2505 0.038618 GGTGTTCCAAAATCACCCGC 60.039 55.000 0.00 0.00 43.84 6.13
1522 2506 7.696110 AACAATGGTGTTCCAAAATCACCCG 62.696 44.000 10.40 3.15 45.00 5.28
1523 2507 4.444164 AACAATGGTGTTCCAAAATCACCC 60.444 41.667 10.40 0.00 45.00 4.61
1524 2508 4.702831 AACAATGGTGTTCCAAAATCACC 58.297 39.130 6.62 6.62 45.00 4.02
1533 2517 9.542809 TGGTAACGAATCAAACAATGGTGTTCC 62.543 40.741 0.00 0.00 44.08 3.62
1534 2518 6.733506 TGGTAACGAATCAAACAATGGTGTTC 60.734 38.462 0.00 0.00 44.08 3.18
1535 2519 5.067936 TGGTAACGAATCAAACAATGGTGTT 59.932 36.000 0.00 0.00 46.05 3.32
1536 2520 4.580995 TGGTAACGAATCAAACAATGGTGT 59.419 37.500 0.00 0.00 38.94 4.16
1537 2521 4.915085 GTGGTAACGAATCAAACAATGGTG 59.085 41.667 0.00 0.00 42.51 4.17
1538 2522 4.022676 GGTGGTAACGAATCAAACAATGGT 60.023 41.667 0.00 0.00 42.51 3.55
1558 2910 2.237143 TGGTAGAGCATTTGGAGAGGTG 59.763 50.000 0.00 0.00 0.00 4.00
1686 3075 5.109210 GCAAAAATAGGCACCCACTAATTC 58.891 41.667 0.00 0.00 0.00 2.17
1689 3078 2.490115 CGCAAAAATAGGCACCCACTAA 59.510 45.455 0.00 0.00 0.00 2.24
1691 3080 0.887933 CGCAAAAATAGGCACCCACT 59.112 50.000 0.00 0.00 0.00 4.00
1692 3081 0.885196 TCGCAAAAATAGGCACCCAC 59.115 50.000 0.00 0.00 0.00 4.61
1693 3082 1.846007 ATCGCAAAAATAGGCACCCA 58.154 45.000 0.00 0.00 0.00 4.51
1695 3084 4.893424 TTCTATCGCAAAAATAGGCACC 57.107 40.909 0.00 0.00 0.00 5.01
1696 3085 9.760660 CTATTATTCTATCGCAAAAATAGGCAC 57.239 33.333 0.00 0.00 0.00 5.01
1697 3086 8.946085 CCTATTATTCTATCGCAAAAATAGGCA 58.054 33.333 5.54 0.00 38.23 4.75
1789 3289 4.218417 ACTTTTCAACTATTTGCGCCATCT 59.782 37.500 4.18 0.00 32.17 2.90
1884 3384 2.742116 GCCCGCCTGTCCTAATGGA 61.742 63.158 0.00 0.00 40.69 3.41
1953 3486 1.066908 CGGAGCTCTCTCATGTCTTCC 59.933 57.143 14.64 0.00 41.13 3.46
2162 3768 3.355378 CCTGCATTGTTCACCTGGATTA 58.645 45.455 0.00 0.00 0.00 1.75
2434 6098 8.901472 ACTATTAGCCACTCATAGGATGATTA 57.099 34.615 1.98 0.00 38.85 1.75
2496 6163 0.395311 CCTCCTGCATGTGAGCCAAT 60.395 55.000 0.00 0.00 0.00 3.16
2856 6533 1.405821 CCGCGAGTACTCTTTCTCCAT 59.594 52.381 20.34 0.00 0.00 3.41
3026 6707 0.322008 GGAGCTCCAACACCTCCAAG 60.322 60.000 28.43 0.00 43.63 3.61
3057 6738 1.897802 CCTCCACTTAAGTACCACCGT 59.102 52.381 8.04 0.00 0.00 4.83
3065 6746 1.834263 CTAGCAGGCCTCCACTTAAGT 59.166 52.381 0.00 1.12 0.00 2.24
3240 6921 2.092914 AGGTAGCCCTGCAACTGAATAC 60.093 50.000 0.00 0.00 40.58 1.89
3259 6941 1.002087 CCGCCCCTACTATTTGCTAGG 59.998 57.143 0.00 0.00 0.00 3.02
3260 6942 1.002087 CCCGCCCCTACTATTTGCTAG 59.998 57.143 0.00 0.00 0.00 3.42
3271 6953 3.831642 TCTAATACATACCCGCCCCTA 57.168 47.619 0.00 0.00 0.00 3.53
3296 6979 5.716228 TCGTACCAATCACCTCCTTTAGTTA 59.284 40.000 0.00 0.00 0.00 2.24
3337 7020 5.728637 ATGACCTCTTCCAATGGTTTTTC 57.271 39.130 0.00 0.00 33.74 2.29
3338 7021 5.840693 AGAATGACCTCTTCCAATGGTTTTT 59.159 36.000 0.00 0.00 33.74 1.94
3343 7026 3.129988 GCAAGAATGACCTCTTCCAATGG 59.870 47.826 0.00 0.00 33.25 3.16
3357 7040 4.970392 TGCGGCTTTGCAAGAATG 57.030 50.000 0.00 0.00 43.02 2.67
3366 7049 1.106351 TGGACAACACATGCGGCTTT 61.106 50.000 0.00 0.00 0.00 3.51
3377 7060 2.217750 CCTTCAATGTCGTGGACAACA 58.782 47.619 2.20 0.00 45.96 3.33
3378 7061 1.535462 CCCTTCAATGTCGTGGACAAC 59.465 52.381 2.20 0.00 45.96 3.32
3379 7062 1.544537 CCCCTTCAATGTCGTGGACAA 60.545 52.381 2.20 0.00 45.96 3.18
3398 7081 0.533085 GCTGACGCCTAGGGAAATCC 60.533 60.000 11.72 0.00 0.00 3.01
3439 7122 1.676006 ACGTTCAACCTCAAAGCCAAG 59.324 47.619 0.00 0.00 0.00 3.61
3440 7123 1.403679 CACGTTCAACCTCAAAGCCAA 59.596 47.619 0.00 0.00 0.00 4.52
3480 7163 3.347216 AGCATTGTAGGCGATTTTCACT 58.653 40.909 0.00 0.00 36.08 3.41
3481 7164 3.685058 GAGCATTGTAGGCGATTTTCAC 58.315 45.455 0.00 0.00 36.08 3.18
3509 7192 4.093261 GTGAGTACTCTCTTCCAGTCGTAC 59.907 50.000 23.01 5.06 40.98 3.67
3523 7206 2.891580 TGGTGTCTTCCAGTGAGTACTC 59.108 50.000 16.32 16.32 34.07 2.59
3524 7207 2.628657 GTGGTGTCTTCCAGTGAGTACT 59.371 50.000 0.00 0.00 38.23 2.73
3525 7208 2.288886 GGTGGTGTCTTCCAGTGAGTAC 60.289 54.545 0.00 0.00 38.23 2.73
3526 7209 1.968493 GGTGGTGTCTTCCAGTGAGTA 59.032 52.381 0.00 0.00 38.23 2.59
3527 7210 0.759346 GGTGGTGTCTTCCAGTGAGT 59.241 55.000 0.00 0.00 38.23 3.41
3528 7211 0.758734 TGGTGGTGTCTTCCAGTGAG 59.241 55.000 0.00 0.00 38.23 3.51
3529 7212 0.758734 CTGGTGGTGTCTTCCAGTGA 59.241 55.000 0.00 0.00 42.42 3.41
3530 7213 3.312404 CTGGTGGTGTCTTCCAGTG 57.688 57.895 0.00 0.00 42.42 3.66
3533 7216 3.392947 TCATAAACTGGTGGTGTCTTCCA 59.607 43.478 0.00 0.00 34.85 3.53
3534 7217 4.015872 TCATAAACTGGTGGTGTCTTCC 57.984 45.455 0.00 0.00 0.00 3.46
3535 7218 7.390718 AGTTATTCATAAACTGGTGGTGTCTTC 59.609 37.037 0.00 0.00 35.87 2.87
3536 7219 7.231467 AGTTATTCATAAACTGGTGGTGTCTT 58.769 34.615 0.00 0.00 35.87 3.01
3537 7220 6.779860 AGTTATTCATAAACTGGTGGTGTCT 58.220 36.000 0.00 0.00 35.87 3.41
3538 7221 7.448748 AAGTTATTCATAAACTGGTGGTGTC 57.551 36.000 0.00 0.00 37.26 3.67
3539 7222 7.833285 AAAGTTATTCATAAACTGGTGGTGT 57.167 32.000 0.00 0.00 37.26 4.16
3540 7223 9.010029 AGTAAAGTTATTCATAAACTGGTGGTG 57.990 33.333 0.00 0.00 37.26 4.17
3794 7481 9.683069 AATAGCAAACAGAATGAACTACAAAAG 57.317 29.630 0.00 0.00 39.69 2.27
3877 7564 4.198530 CCATGCCAACTTTCAACCTTTTT 58.801 39.130 0.00 0.00 0.00 1.94
3925 7612 6.013984 TCGTAACCCTCTCTACTTTTTGGAAT 60.014 38.462 0.00 0.00 0.00 3.01
4270 7957 7.452880 ACTTTGTAACACATGAACATGCTAT 57.547 32.000 13.71 4.02 42.39 2.97
4281 7968 3.640967 ACCATGCCAACTTTGTAACACAT 59.359 39.130 0.00 0.00 0.00 3.21
4480 8167 0.104725 GGGAGATCCTGGGAGTGGAT 60.105 60.000 0.00 0.00 46.05 3.41
4495 8182 6.717084 ACATAGTTCTTTCAGGAAAAAGGGAG 59.283 38.462 0.00 0.00 36.97 4.30
4696 8383 2.764967 TTAGGCGGCGGGGTACAT 60.765 61.111 9.78 0.00 0.00 2.29
4824 8511 0.592637 CAGTGTCCGCTTTGATGCAA 59.407 50.000 0.00 0.00 0.00 4.08
4842 8529 1.519719 GGCACCAACCAAAACAGCA 59.480 52.632 0.00 0.00 0.00 4.41
4860 8547 0.811281 GACCGCCCAAGATCAAAAGG 59.189 55.000 0.00 0.00 0.00 3.11
4877 8564 9.659830 GATAAATGGGAATACATTTTACACGAC 57.340 33.333 9.14 0.00 45.94 4.34
4904 8591 7.039882 ACTGTATTGACTTACAAAGGATACGG 58.960 38.462 12.44 12.44 42.03 4.02
4960 8647 4.260784 GGTGACAAGACTGTTTGTGATGAC 60.261 45.833 11.28 5.14 41.15 3.06
5152 8839 8.064336 ACTCAATAATATGTAGGGACGGATAC 57.936 38.462 0.00 0.00 0.00 2.24
5211 8898 2.557056 CTCCCTAAATCGCGGTATGAGA 59.443 50.000 6.13 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.