Multiple sequence alignment - TraesCS1A01G389700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G389700 chr1A 100.000 3875 0 0 1 3875 557553916 557550042 0.000000e+00 7156
1 TraesCS1A01G389700 chr1A 95.178 788 23 5 2292 3076 557541824 557541049 0.000000e+00 1230
2 TraesCS1A01G389700 chr1A 87.302 693 78 4 3128 3819 310923901 310923218 0.000000e+00 784
3 TraesCS1A01G389700 chr1D 93.008 2603 114 35 433 3020 465148833 465146284 0.000000e+00 3736
4 TraesCS1A01G389700 chr1D 87.987 308 29 2 3568 3875 457141989 457142288 1.320000e-94 357
5 TraesCS1A01G389700 chr1B 95.187 2223 78 12 668 2881 642066553 642064351 0.000000e+00 3485
6 TraesCS1A01G389700 chr1B 83.857 223 21 6 380 601 642066860 642066652 8.490000e-47 198
7 TraesCS1A01G389700 chr2A 89.229 687 56 7 3128 3813 17472402 17471733 0.000000e+00 843
8 TraesCS1A01G389700 chr7D 89.286 448 44 4 3128 3574 419813106 419813550 3.380000e-155 558
9 TraesCS1A01G389700 chr7D 89.137 313 27 1 3563 3875 104919748 104920053 2.180000e-102 383
10 TraesCS1A01G389700 chr7D 89.811 265 20 1 3611 3875 419813552 419813809 2.230000e-87 333
11 TraesCS1A01G389700 chr7D 85.284 299 32 5 3579 3875 175924217 175924505 8.140000e-77 298
12 TraesCS1A01G389700 chr3D 87.841 477 42 9 3252 3721 612318707 612319174 2.630000e-151 545
13 TraesCS1A01G389700 chr3D 74.831 886 183 28 1826 2700 374060037 374060893 7.910000e-97 364
14 TraesCS1A01G389700 chr5D 90.097 414 34 1 3462 3875 319730817 319731223 7.370000e-147 531
15 TraesCS1A01G389700 chr4B 86.463 458 57 3 3118 3575 131163864 131164316 7.480000e-137 497
16 TraesCS1A01G389700 chr4D 86.351 359 43 6 3211 3567 80826497 80826143 1.690000e-103 387
17 TraesCS1A01G389700 chr4D 88.214 280 26 1 3596 3875 50034625 50034353 1.040000e-85 327
18 TraesCS1A01G389700 chr3B 75.168 894 184 30 1826 2709 487856404 487857269 1.690000e-103 387
19 TraesCS1A01G389700 chr3A 74.722 898 181 35 1826 2709 496513526 496514391 3.680000e-95 359
20 TraesCS1A01G389700 chr3A 86.196 326 36 3 3550 3875 695948184 695948500 1.030000e-90 344
21 TraesCS1A01G389700 chr5B 88.215 297 22 4 3579 3875 254978673 254978390 3.710000e-90 342
22 TraesCS1A01G389700 chr5B 87.719 285 32 3 3291 3574 609857186 609856904 2.890000e-86 329
23 TraesCS1A01G389700 chr5B 86.039 308 34 5 3568 3875 455346748 455346450 4.830000e-84 322


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G389700 chr1A 557550042 557553916 3874 True 7156.0 7156 100.0000 1 3875 1 chr1A.!!$R3 3874
1 TraesCS1A01G389700 chr1A 557541049 557541824 775 True 1230.0 1230 95.1780 2292 3076 1 chr1A.!!$R2 784
2 TraesCS1A01G389700 chr1A 310923218 310923901 683 True 784.0 784 87.3020 3128 3819 1 chr1A.!!$R1 691
3 TraesCS1A01G389700 chr1D 465146284 465148833 2549 True 3736.0 3736 93.0080 433 3020 1 chr1D.!!$R1 2587
4 TraesCS1A01G389700 chr1B 642064351 642066860 2509 True 1841.5 3485 89.5220 380 2881 2 chr1B.!!$R1 2501
5 TraesCS1A01G389700 chr2A 17471733 17472402 669 True 843.0 843 89.2290 3128 3813 1 chr2A.!!$R1 685
6 TraesCS1A01G389700 chr7D 419813106 419813809 703 False 445.5 558 89.5485 3128 3875 2 chr7D.!!$F3 747
7 TraesCS1A01G389700 chr3D 374060037 374060893 856 False 364.0 364 74.8310 1826 2700 1 chr3D.!!$F1 874
8 TraesCS1A01G389700 chr3B 487856404 487857269 865 False 387.0 387 75.1680 1826 2709 1 chr3B.!!$F1 883
9 TraesCS1A01G389700 chr3A 496513526 496514391 865 False 359.0 359 74.7220 1826 2709 1 chr3A.!!$F1 883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.039256 GGCGTTGTGTGAATGCATGT 60.039 50.0 0.00 0.00 34.00 3.21 F
198 199 0.039798 GTGCAGTTGTGGCATGAGTG 60.040 55.0 0.00 0.00 44.11 3.51 F
313 314 0.178068 GGCAGTTAGGCTCGGATGAA 59.822 55.0 0.00 0.00 40.24 2.57 F
350 351 0.248289 GCAAATTGCAGACCATGGCT 59.752 50.0 13.04 7.31 44.26 4.75 F
356 357 0.399833 TGCAGACCATGGCTTACACA 59.600 50.0 13.04 0.00 0.00 3.72 F
772 833 0.522286 CGCAGAACAAACACGCACAA 60.522 50.0 0.00 0.00 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2123 1.118356 AGATGATGACCTCCGGCTCC 61.118 60.000 0.00 0.00 0.00 4.70 R
2555 2623 4.530857 GCGAGTGGGGGTCGATGG 62.531 72.222 0.00 0.00 39.92 3.51 R
2647 2718 1.541310 ATGGTGACCATGACGTCGGT 61.541 55.000 17.79 14.13 43.39 4.69 R
2709 2783 1.456705 GGAGAGGATGAGGAGGCGT 60.457 63.158 0.00 0.00 0.00 5.68 R
2802 2876 2.390225 AGATGAGGTAGTAGGCAGGG 57.610 55.000 0.00 0.00 0.00 4.45 R
3084 3162 0.544697 GGCTAGGATGGGTCGGAAAA 59.455 55.000 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.796350 GAACAACTCACACAGTGTAAGTT 57.204 39.130 15.63 15.63 34.56 2.66
23 24 6.178239 GAACAACTCACACAGTGTAAGTTT 57.822 37.500 18.37 6.56 34.56 2.66
24 25 5.545658 ACAACTCACACAGTGTAAGTTTG 57.454 39.130 18.37 15.48 34.56 2.93
25 26 5.001232 ACAACTCACACAGTGTAAGTTTGT 58.999 37.500 18.37 16.02 34.56 2.83
26 27 5.472137 ACAACTCACACAGTGTAAGTTTGTT 59.528 36.000 18.37 4.76 34.56 2.83
27 28 6.016610 ACAACTCACACAGTGTAAGTTTGTTT 60.017 34.615 18.37 2.50 34.56 2.83
28 29 6.569179 ACTCACACAGTGTAAGTTTGTTTT 57.431 33.333 3.31 0.00 34.79 2.43
29 30 6.977213 ACTCACACAGTGTAAGTTTGTTTTT 58.023 32.000 3.31 0.00 34.79 1.94
30 31 7.081976 ACTCACACAGTGTAAGTTTGTTTTTC 58.918 34.615 3.31 0.00 34.79 2.29
31 32 6.971602 TCACACAGTGTAAGTTTGTTTTTCA 58.028 32.000 5.69 0.00 34.79 2.69
32 33 7.426410 TCACACAGTGTAAGTTTGTTTTTCAA 58.574 30.769 5.69 0.00 34.79 2.69
33 34 7.380065 TCACACAGTGTAAGTTTGTTTTTCAAC 59.620 33.333 5.69 0.00 33.84 3.18
34 35 7.168302 CACACAGTGTAAGTTTGTTTTTCAACA 59.832 33.333 5.69 0.00 41.39 3.33
35 36 7.870445 ACACAGTGTAAGTTTGTTTTTCAACAT 59.130 29.630 3.69 0.00 42.66 2.71
36 37 9.347934 CACAGTGTAAGTTTGTTTTTCAACATA 57.652 29.630 0.00 0.00 42.66 2.29
37 38 9.915629 ACAGTGTAAGTTTGTTTTTCAACATAA 57.084 25.926 0.00 0.00 42.66 1.90
65 66 8.970859 AAGAATGGATAGTTAGAAGGATTGTG 57.029 34.615 0.00 0.00 0.00 3.33
66 67 8.324191 AGAATGGATAGTTAGAAGGATTGTGA 57.676 34.615 0.00 0.00 0.00 3.58
67 68 8.943085 AGAATGGATAGTTAGAAGGATTGTGAT 58.057 33.333 0.00 0.00 0.00 3.06
70 71 8.783660 TGGATAGTTAGAAGGATTGTGATACT 57.216 34.615 0.00 0.00 0.00 2.12
71 72 9.213777 TGGATAGTTAGAAGGATTGTGATACTT 57.786 33.333 0.00 0.00 39.20 2.24
79 80 7.256756 GAAGGATTGTGATACTTCCATTCAG 57.743 40.000 0.77 0.00 44.33 3.02
80 81 6.319048 AGGATTGTGATACTTCCATTCAGT 57.681 37.500 0.00 0.00 0.00 3.41
81 82 7.437713 AGGATTGTGATACTTCCATTCAGTA 57.562 36.000 0.00 0.00 0.00 2.74
82 83 7.504403 AGGATTGTGATACTTCCATTCAGTAG 58.496 38.462 0.00 0.00 30.19 2.57
83 84 6.708054 GGATTGTGATACTTCCATTCAGTAGG 59.292 42.308 0.00 0.00 30.19 3.18
84 85 5.614324 TGTGATACTTCCATTCAGTAGGG 57.386 43.478 0.00 0.00 30.19 3.53
85 86 5.277250 TGTGATACTTCCATTCAGTAGGGA 58.723 41.667 0.00 0.00 30.19 4.20
86 87 5.128827 TGTGATACTTCCATTCAGTAGGGAC 59.871 44.000 0.00 0.00 30.19 4.46
87 88 4.654262 TGATACTTCCATTCAGTAGGGACC 59.346 45.833 0.00 0.00 30.19 4.46
88 89 2.915869 ACTTCCATTCAGTAGGGACCA 58.084 47.619 0.00 0.00 0.00 4.02
89 90 3.256704 ACTTCCATTCAGTAGGGACCAA 58.743 45.455 0.00 0.00 0.00 3.67
90 91 3.655777 ACTTCCATTCAGTAGGGACCAAA 59.344 43.478 0.00 0.00 0.00 3.28
91 92 3.713826 TCCATTCAGTAGGGACCAAAC 57.286 47.619 0.00 0.00 0.00 2.93
92 93 2.307686 TCCATTCAGTAGGGACCAAACC 59.692 50.000 0.00 0.00 0.00 3.27
112 113 6.753107 AACCCTAGGTTTAACGATTTGATG 57.247 37.500 8.29 0.00 44.33 3.07
113 114 4.638865 ACCCTAGGTTTAACGATTTGATGC 59.361 41.667 8.29 0.00 27.29 3.91
114 115 4.638421 CCCTAGGTTTAACGATTTGATGCA 59.362 41.667 8.29 0.00 0.00 3.96
115 116 5.299279 CCCTAGGTTTAACGATTTGATGCAT 59.701 40.000 8.29 0.00 0.00 3.96
116 117 6.201517 CCTAGGTTTAACGATTTGATGCATG 58.798 40.000 2.46 0.00 0.00 4.06
117 118 5.643379 AGGTTTAACGATTTGATGCATGT 57.357 34.783 2.46 0.00 0.00 3.21
118 119 5.640732 AGGTTTAACGATTTGATGCATGTC 58.359 37.500 2.46 0.00 0.00 3.06
119 120 5.415701 AGGTTTAACGATTTGATGCATGTCT 59.584 36.000 2.46 0.00 0.00 3.41
120 121 5.739161 GGTTTAACGATTTGATGCATGTCTC 59.261 40.000 2.46 0.00 0.00 3.36
121 122 6.314018 GTTTAACGATTTGATGCATGTCTCA 58.686 36.000 2.46 0.00 0.00 3.27
122 123 6.682423 TTAACGATTTGATGCATGTCTCAT 57.318 33.333 2.46 0.00 0.00 2.90
123 124 5.571784 AACGATTTGATGCATGTCTCATT 57.428 34.783 2.46 0.00 0.00 2.57
124 125 6.682423 AACGATTTGATGCATGTCTCATTA 57.318 33.333 2.46 0.00 0.00 1.90
125 126 6.682423 ACGATTTGATGCATGTCTCATTAA 57.318 33.333 2.46 0.00 0.00 1.40
126 127 7.268199 ACGATTTGATGCATGTCTCATTAAT 57.732 32.000 2.46 0.00 0.00 1.40
127 128 7.136772 ACGATTTGATGCATGTCTCATTAATG 58.863 34.615 2.46 9.29 0.00 1.90
128 129 7.136772 CGATTTGATGCATGTCTCATTAATGT 58.863 34.615 14.97 0.00 0.00 2.71
129 130 8.284693 CGATTTGATGCATGTCTCATTAATGTA 58.715 33.333 14.97 2.57 0.00 2.29
130 131 9.608617 GATTTGATGCATGTCTCATTAATGTAG 57.391 33.333 14.97 10.95 0.00 2.74
131 132 8.510243 TTTGATGCATGTCTCATTAATGTAGT 57.490 30.769 14.97 0.00 0.00 2.73
132 133 7.719778 TGATGCATGTCTCATTAATGTAGTC 57.280 36.000 14.97 9.39 0.00 2.59
133 134 6.421801 TGATGCATGTCTCATTAATGTAGTCG 59.578 38.462 14.97 2.95 0.00 4.18
134 135 5.901552 TGCATGTCTCATTAATGTAGTCGA 58.098 37.500 14.97 3.41 0.00 4.20
135 136 6.337356 TGCATGTCTCATTAATGTAGTCGAA 58.663 36.000 14.97 0.00 0.00 3.71
136 137 6.255670 TGCATGTCTCATTAATGTAGTCGAAC 59.744 38.462 14.97 6.48 0.00 3.95
137 138 6.477033 GCATGTCTCATTAATGTAGTCGAACT 59.523 38.462 14.97 0.00 0.00 3.01
138 139 7.306283 GCATGTCTCATTAATGTAGTCGAACTC 60.306 40.741 14.97 0.00 0.00 3.01
139 140 6.255950 TGTCTCATTAATGTAGTCGAACTCG 58.744 40.000 14.97 0.00 41.45 4.18
154 155 6.438259 TCGAACTCGATCTCATCTAGTTTT 57.562 37.500 0.00 0.00 42.95 2.43
155 156 6.487960 TCGAACTCGATCTCATCTAGTTTTC 58.512 40.000 0.00 0.00 42.95 2.29
156 157 6.093633 TCGAACTCGATCTCATCTAGTTTTCA 59.906 38.462 0.00 0.00 42.95 2.69
157 158 6.413526 CGAACTCGATCTCATCTAGTTTTCAG 59.586 42.308 5.24 0.00 42.95 3.02
158 159 5.587289 ACTCGATCTCATCTAGTTTTCAGC 58.413 41.667 0.00 0.00 32.05 4.26
159 160 4.938080 TCGATCTCATCTAGTTTTCAGCC 58.062 43.478 0.00 0.00 0.00 4.85
160 161 4.402474 TCGATCTCATCTAGTTTTCAGCCA 59.598 41.667 0.00 0.00 0.00 4.75
161 162 4.744137 CGATCTCATCTAGTTTTCAGCCAG 59.256 45.833 0.00 0.00 0.00 4.85
162 163 4.478206 TCTCATCTAGTTTTCAGCCAGG 57.522 45.455 0.00 0.00 0.00 4.45
163 164 2.941720 CTCATCTAGTTTTCAGCCAGGC 59.058 50.000 1.84 1.84 0.00 4.85
164 165 1.667724 CATCTAGTTTTCAGCCAGGCG 59.332 52.381 5.55 0.83 0.00 5.52
165 166 0.685097 TCTAGTTTTCAGCCAGGCGT 59.315 50.000 5.55 0.00 0.00 5.68
166 167 1.071699 TCTAGTTTTCAGCCAGGCGTT 59.928 47.619 5.55 0.00 0.00 4.84
167 168 1.197721 CTAGTTTTCAGCCAGGCGTTG 59.802 52.381 5.55 0.00 0.00 4.10
168 169 0.751643 AGTTTTCAGCCAGGCGTTGT 60.752 50.000 5.55 0.00 0.00 3.32
169 170 0.594796 GTTTTCAGCCAGGCGTTGTG 60.595 55.000 5.55 0.00 0.00 3.33
170 171 1.034838 TTTTCAGCCAGGCGTTGTGT 61.035 50.000 5.55 0.00 0.00 3.72
171 172 1.723608 TTTCAGCCAGGCGTTGTGTG 61.724 55.000 5.55 0.00 0.00 3.82
172 173 2.591429 CAGCCAGGCGTTGTGTGA 60.591 61.111 5.55 0.00 0.00 3.58
173 174 2.186160 CAGCCAGGCGTTGTGTGAA 61.186 57.895 5.55 0.00 0.00 3.18
174 175 1.228245 AGCCAGGCGTTGTGTGAAT 60.228 52.632 5.55 0.00 0.00 2.57
175 176 1.081242 GCCAGGCGTTGTGTGAATG 60.081 57.895 0.00 0.00 0.00 2.67
176 177 1.081242 CCAGGCGTTGTGTGAATGC 60.081 57.895 0.00 0.00 0.00 3.56
177 178 1.653667 CAGGCGTTGTGTGAATGCA 59.346 52.632 0.00 0.00 34.00 3.96
178 179 0.241749 CAGGCGTTGTGTGAATGCAT 59.758 50.000 0.00 0.00 34.00 3.96
179 180 0.241749 AGGCGTTGTGTGAATGCATG 59.758 50.000 0.00 0.00 34.00 4.06
180 181 0.039256 GGCGTTGTGTGAATGCATGT 60.039 50.000 0.00 0.00 34.00 3.21
181 182 1.054574 GCGTTGTGTGAATGCATGTG 58.945 50.000 0.00 0.00 32.66 3.21
182 183 1.054574 CGTTGTGTGAATGCATGTGC 58.945 50.000 0.00 0.00 42.50 4.57
192 193 2.729455 GCATGTGCAGTTGTGGCA 59.271 55.556 0.00 0.00 41.59 4.92
193 194 1.290955 GCATGTGCAGTTGTGGCAT 59.709 52.632 0.00 0.00 44.11 4.40
194 195 1.011968 GCATGTGCAGTTGTGGCATG 61.012 55.000 6.80 6.80 44.11 4.06
195 196 0.599060 CATGTGCAGTTGTGGCATGA 59.401 50.000 0.00 0.00 44.11 3.07
196 197 0.885879 ATGTGCAGTTGTGGCATGAG 59.114 50.000 0.00 0.00 44.11 2.90
197 198 0.466007 TGTGCAGTTGTGGCATGAGT 60.466 50.000 0.00 0.00 44.11 3.41
198 199 0.039798 GTGCAGTTGTGGCATGAGTG 60.040 55.000 0.00 0.00 44.11 3.51
199 200 1.174078 TGCAGTTGTGGCATGAGTGG 61.174 55.000 0.00 0.00 36.11 4.00
200 201 1.870055 GCAGTTGTGGCATGAGTGGG 61.870 60.000 0.00 0.00 0.00 4.61
201 202 0.538057 CAGTTGTGGCATGAGTGGGT 60.538 55.000 0.00 0.00 0.00 4.51
202 203 1.064003 AGTTGTGGCATGAGTGGGTA 58.936 50.000 0.00 0.00 0.00 3.69
203 204 1.635487 AGTTGTGGCATGAGTGGGTAT 59.365 47.619 0.00 0.00 0.00 2.73
204 205 1.745087 GTTGTGGCATGAGTGGGTATG 59.255 52.381 0.00 0.00 0.00 2.39
205 206 0.991146 TGTGGCATGAGTGGGTATGT 59.009 50.000 0.00 0.00 0.00 2.29
206 207 1.339920 TGTGGCATGAGTGGGTATGTG 60.340 52.381 0.00 0.00 0.00 3.21
207 208 0.991146 TGGCATGAGTGGGTATGTGT 59.009 50.000 0.00 0.00 0.00 3.72
208 209 1.339920 TGGCATGAGTGGGTATGTGTG 60.340 52.381 0.00 0.00 0.00 3.82
209 210 1.340017 GGCATGAGTGGGTATGTGTGT 60.340 52.381 0.00 0.00 0.00 3.72
210 211 1.739466 GCATGAGTGGGTATGTGTGTG 59.261 52.381 0.00 0.00 0.00 3.82
211 212 1.739466 CATGAGTGGGTATGTGTGTGC 59.261 52.381 0.00 0.00 0.00 4.57
212 213 0.761802 TGAGTGGGTATGTGTGTGCA 59.238 50.000 0.00 0.00 0.00 4.57
213 214 1.141858 TGAGTGGGTATGTGTGTGCAA 59.858 47.619 0.00 0.00 0.00 4.08
214 215 1.535462 GAGTGGGTATGTGTGTGCAAC 59.465 52.381 0.00 0.00 37.35 4.17
228 229 2.765108 TGCAACACACATTGTAACCG 57.235 45.000 0.00 0.00 37.51 4.44
229 230 1.335182 TGCAACACACATTGTAACCGG 59.665 47.619 0.00 0.00 37.51 5.28
230 231 1.335496 GCAACACACATTGTAACCGGT 59.665 47.619 0.00 0.00 37.51 5.28
231 232 2.856720 GCAACACACATTGTAACCGGTG 60.857 50.000 8.52 0.00 37.51 4.94
232 233 2.335316 ACACACATTGTAACCGGTGT 57.665 45.000 8.52 0.00 44.69 4.16
233 234 2.645802 ACACACATTGTAACCGGTGTT 58.354 42.857 8.52 0.00 42.16 3.32
234 235 3.018149 ACACACATTGTAACCGGTGTTT 58.982 40.909 8.52 0.00 42.16 2.83
235 236 3.065648 ACACACATTGTAACCGGTGTTTC 59.934 43.478 8.52 0.00 42.16 2.78
236 237 3.314080 CACACATTGTAACCGGTGTTTCT 59.686 43.478 8.52 0.00 42.16 2.52
237 238 3.562557 ACACATTGTAACCGGTGTTTCTC 59.437 43.478 8.52 0.00 41.36 2.87
238 239 2.803956 ACATTGTAACCGGTGTTTCTCG 59.196 45.455 8.52 0.00 35.87 4.04
239 240 2.886862 TTGTAACCGGTGTTTCTCGA 57.113 45.000 8.52 0.00 35.87 4.04
240 241 2.886862 TGTAACCGGTGTTTCTCGAA 57.113 45.000 8.52 0.00 35.87 3.71
241 242 3.176552 TGTAACCGGTGTTTCTCGAAA 57.823 42.857 8.52 0.00 35.87 3.46
242 243 3.731089 TGTAACCGGTGTTTCTCGAAAT 58.269 40.909 8.52 0.00 35.87 2.17
243 244 4.880759 TGTAACCGGTGTTTCTCGAAATA 58.119 39.130 8.52 0.00 35.87 1.40
244 245 5.295950 TGTAACCGGTGTTTCTCGAAATAA 58.704 37.500 8.52 0.00 35.87 1.40
245 246 5.933463 TGTAACCGGTGTTTCTCGAAATAAT 59.067 36.000 8.52 0.00 35.87 1.28
246 247 5.952526 AACCGGTGTTTCTCGAAATAATT 57.047 34.783 8.52 0.00 32.36 1.40
247 248 5.952526 ACCGGTGTTTCTCGAAATAATTT 57.047 34.783 6.12 0.00 32.36 1.82
248 249 5.934921 ACCGGTGTTTCTCGAAATAATTTC 58.065 37.500 6.12 0.00 36.32 2.17
249 250 5.704053 ACCGGTGTTTCTCGAAATAATTTCT 59.296 36.000 6.12 0.00 37.52 2.52
250 251 6.206048 ACCGGTGTTTCTCGAAATAATTTCTT 59.794 34.615 6.12 0.00 37.52 2.52
251 252 7.081976 CCGGTGTTTCTCGAAATAATTTCTTT 58.918 34.615 0.00 0.00 37.52 2.52
252 253 7.270579 CCGGTGTTTCTCGAAATAATTTCTTTC 59.729 37.037 0.00 0.00 37.52 2.62
253 254 7.270579 CGGTGTTTCTCGAAATAATTTCTTTCC 59.729 37.037 0.00 0.00 37.52 3.13
254 255 7.541091 GGTGTTTCTCGAAATAATTTCTTTCCC 59.459 37.037 0.00 0.00 37.52 3.97
255 256 8.079809 GTGTTTCTCGAAATAATTTCTTTCCCA 58.920 33.333 0.00 0.00 37.52 4.37
256 257 8.634444 TGTTTCTCGAAATAATTTCTTTCCCAA 58.366 29.630 0.00 0.00 37.52 4.12
257 258 8.912658 GTTTCTCGAAATAATTTCTTTCCCAAC 58.087 33.333 0.00 3.59 37.52 3.77
258 259 7.753309 TCTCGAAATAATTTCTTTCCCAACA 57.247 32.000 0.00 0.00 37.52 3.33
259 260 8.348285 TCTCGAAATAATTTCTTTCCCAACAT 57.652 30.769 0.00 0.00 37.52 2.71
260 261 8.243426 TCTCGAAATAATTTCTTTCCCAACATG 58.757 33.333 0.00 0.00 37.52 3.21
261 262 8.116651 TCGAAATAATTTCTTTCCCAACATGA 57.883 30.769 0.00 0.00 37.52 3.07
262 263 8.243426 TCGAAATAATTTCTTTCCCAACATGAG 58.757 33.333 0.00 0.00 37.52 2.90
263 264 8.243426 CGAAATAATTTCTTTCCCAACATGAGA 58.757 33.333 0.00 0.00 37.52 3.27
264 265 9.578439 GAAATAATTTCTTTCCCAACATGAGAG 57.422 33.333 0.00 0.00 36.73 3.20
265 266 8.884124 AATAATTTCTTTCCCAACATGAGAGA 57.116 30.769 0.00 0.00 0.00 3.10
266 267 6.581171 AATTTCTTTCCCAACATGAGAGAC 57.419 37.500 0.00 0.00 0.00 3.36
267 268 4.982241 TTCTTTCCCAACATGAGAGACT 57.018 40.909 0.00 0.00 0.00 3.24
268 269 4.277515 TCTTTCCCAACATGAGAGACTG 57.722 45.455 0.00 0.00 0.00 3.51
269 270 3.648067 TCTTTCCCAACATGAGAGACTGT 59.352 43.478 0.00 0.00 0.00 3.55
270 271 3.407424 TTCCCAACATGAGAGACTGTG 57.593 47.619 0.00 0.00 0.00 3.66
271 272 1.625315 TCCCAACATGAGAGACTGTGG 59.375 52.381 0.00 0.00 0.00 4.17
272 273 1.349026 CCCAACATGAGAGACTGTGGT 59.651 52.381 0.00 0.00 0.00 4.16
273 274 2.567169 CCCAACATGAGAGACTGTGGTA 59.433 50.000 0.00 0.00 0.00 3.25
274 275 3.368843 CCCAACATGAGAGACTGTGGTAG 60.369 52.174 0.00 0.00 0.00 3.18
275 276 3.259374 CCAACATGAGAGACTGTGGTAGT 59.741 47.826 0.00 0.00 44.02 2.73
276 277 4.462834 CCAACATGAGAGACTGTGGTAGTA 59.537 45.833 0.00 0.00 40.53 1.82
277 278 5.047306 CCAACATGAGAGACTGTGGTAGTAA 60.047 44.000 0.00 0.00 40.53 2.24
278 279 6.351371 CCAACATGAGAGACTGTGGTAGTAAT 60.351 42.308 0.00 0.00 40.53 1.89
279 280 7.147897 CCAACATGAGAGACTGTGGTAGTAATA 60.148 40.741 0.00 0.00 40.53 0.98
280 281 7.956328 ACATGAGAGACTGTGGTAGTAATAA 57.044 36.000 0.00 0.00 40.53 1.40
281 282 8.001881 ACATGAGAGACTGTGGTAGTAATAAG 57.998 38.462 0.00 0.00 40.53 1.73
282 283 6.452494 TGAGAGACTGTGGTAGTAATAAGC 57.548 41.667 0.00 0.00 40.53 3.09
283 284 5.066117 TGAGAGACTGTGGTAGTAATAAGCG 59.934 44.000 0.00 0.00 40.53 4.68
284 285 5.191426 AGAGACTGTGGTAGTAATAAGCGA 58.809 41.667 0.00 0.00 40.53 4.93
285 286 5.297278 AGAGACTGTGGTAGTAATAAGCGAG 59.703 44.000 0.00 0.00 40.53 5.03
286 287 4.948621 AGACTGTGGTAGTAATAAGCGAGT 59.051 41.667 0.00 0.00 40.53 4.18
287 288 4.995124 ACTGTGGTAGTAATAAGCGAGTG 58.005 43.478 0.00 0.00 38.04 3.51
288 289 4.461781 ACTGTGGTAGTAATAAGCGAGTGT 59.538 41.667 0.00 0.00 38.04 3.55
289 290 5.649395 ACTGTGGTAGTAATAAGCGAGTGTA 59.351 40.000 0.00 0.00 38.04 2.90
290 291 6.151648 ACTGTGGTAGTAATAAGCGAGTGTAA 59.848 38.462 0.00 0.00 38.04 2.41
291 292 6.923012 TGTGGTAGTAATAAGCGAGTGTAAA 58.077 36.000 0.00 0.00 0.00 2.01
292 293 7.377398 TGTGGTAGTAATAAGCGAGTGTAAAA 58.623 34.615 0.00 0.00 0.00 1.52
293 294 7.871973 TGTGGTAGTAATAAGCGAGTGTAAAAA 59.128 33.333 0.00 0.00 0.00 1.94
294 295 8.378421 GTGGTAGTAATAAGCGAGTGTAAAAAG 58.622 37.037 0.00 0.00 0.00 2.27
295 296 7.546667 TGGTAGTAATAAGCGAGTGTAAAAAGG 59.453 37.037 0.00 0.00 0.00 3.11
296 297 6.418585 AGTAATAAGCGAGTGTAAAAAGGC 57.581 37.500 0.00 0.00 0.00 4.35
297 298 5.935789 AGTAATAAGCGAGTGTAAAAAGGCA 59.064 36.000 0.00 0.00 0.00 4.75
298 299 4.946784 ATAAGCGAGTGTAAAAAGGCAG 57.053 40.909 0.00 0.00 0.00 4.85
299 300 2.256117 AGCGAGTGTAAAAAGGCAGT 57.744 45.000 0.00 0.00 0.00 4.40
300 301 2.572290 AGCGAGTGTAAAAAGGCAGTT 58.428 42.857 0.00 0.00 0.00 3.16
301 302 3.735591 AGCGAGTGTAAAAAGGCAGTTA 58.264 40.909 0.00 0.00 0.00 2.24
302 303 3.746492 AGCGAGTGTAAAAAGGCAGTTAG 59.254 43.478 0.00 0.00 0.00 2.34
303 304 3.120304 GCGAGTGTAAAAAGGCAGTTAGG 60.120 47.826 0.00 0.00 0.00 2.69
304 305 3.120304 CGAGTGTAAAAAGGCAGTTAGGC 60.120 47.826 0.00 0.00 44.61 3.93
311 312 4.445699 GGCAGTTAGGCTCGGATG 57.554 61.111 0.00 0.00 40.24 3.51
312 313 1.823295 GGCAGTTAGGCTCGGATGA 59.177 57.895 0.00 0.00 40.24 2.92
313 314 0.178068 GGCAGTTAGGCTCGGATGAA 59.822 55.000 0.00 0.00 40.24 2.57
314 315 1.291132 GCAGTTAGGCTCGGATGAAC 58.709 55.000 0.00 0.00 0.00 3.18
315 316 1.560923 CAGTTAGGCTCGGATGAACG 58.439 55.000 0.00 0.00 0.00 3.95
316 317 1.135083 CAGTTAGGCTCGGATGAACGT 60.135 52.381 0.00 0.00 34.94 3.99
317 318 2.098607 CAGTTAGGCTCGGATGAACGTA 59.901 50.000 0.00 0.00 34.94 3.57
318 319 2.098770 AGTTAGGCTCGGATGAACGTAC 59.901 50.000 0.00 0.00 34.94 3.67
319 320 0.659427 TAGGCTCGGATGAACGTACG 59.341 55.000 15.01 15.01 34.94 3.67
320 321 1.138247 GGCTCGGATGAACGTACGT 59.862 57.895 16.72 16.72 34.94 3.57
321 322 0.378257 GGCTCGGATGAACGTACGTA 59.622 55.000 23.12 7.43 34.94 3.57
322 323 1.002033 GGCTCGGATGAACGTACGTAT 60.002 52.381 23.12 12.69 34.94 3.06
323 324 2.041966 GCTCGGATGAACGTACGTATG 58.958 52.381 23.12 13.27 34.94 2.39
324 325 2.540361 GCTCGGATGAACGTACGTATGT 60.540 50.000 23.12 14.70 34.94 2.29
325 326 3.303329 GCTCGGATGAACGTACGTATGTA 60.303 47.826 23.12 6.85 34.94 2.29
326 327 4.195744 TCGGATGAACGTACGTATGTAC 57.804 45.455 23.12 14.23 46.09 2.90
338 339 4.678509 ACGTATGTACACTGGCAAATTG 57.321 40.909 0.00 0.00 0.00 2.32
339 340 3.119990 ACGTATGTACACTGGCAAATTGC 60.120 43.478 9.87 9.87 44.08 3.56
349 350 2.758497 GCAAATTGCAGACCATGGC 58.242 52.632 13.04 4.70 44.26 4.40
350 351 0.248289 GCAAATTGCAGACCATGGCT 59.752 50.000 13.04 7.31 44.26 4.75
351 352 1.338389 GCAAATTGCAGACCATGGCTT 60.338 47.619 13.04 0.00 44.26 4.35
352 353 2.094078 GCAAATTGCAGACCATGGCTTA 60.094 45.455 13.04 0.00 44.26 3.09
353 354 3.514645 CAAATTGCAGACCATGGCTTAC 58.485 45.455 13.04 5.46 0.00 2.34
354 355 2.512692 ATTGCAGACCATGGCTTACA 57.487 45.000 13.04 7.95 0.00 2.41
355 356 1.533625 TTGCAGACCATGGCTTACAC 58.466 50.000 13.04 0.00 0.00 2.90
356 357 0.399833 TGCAGACCATGGCTTACACA 59.600 50.000 13.04 0.00 0.00 3.72
357 358 1.202867 TGCAGACCATGGCTTACACAA 60.203 47.619 13.04 0.00 0.00 3.33
358 359 1.885887 GCAGACCATGGCTTACACAAA 59.114 47.619 13.04 0.00 0.00 2.83
359 360 2.351738 GCAGACCATGGCTTACACAAAC 60.352 50.000 13.04 0.00 0.00 2.93
360 361 2.884012 CAGACCATGGCTTACACAAACA 59.116 45.455 13.04 0.00 0.00 2.83
361 362 3.317711 CAGACCATGGCTTACACAAACAA 59.682 43.478 13.04 0.00 0.00 2.83
362 363 4.022068 CAGACCATGGCTTACACAAACAAT 60.022 41.667 13.04 0.00 0.00 2.71
363 364 4.218417 AGACCATGGCTTACACAAACAATC 59.782 41.667 13.04 0.00 0.00 2.67
364 365 4.151883 ACCATGGCTTACACAAACAATCT 58.848 39.130 13.04 0.00 0.00 2.40
365 366 5.321102 ACCATGGCTTACACAAACAATCTA 58.679 37.500 13.04 0.00 0.00 1.98
366 367 5.951747 ACCATGGCTTACACAAACAATCTAT 59.048 36.000 13.04 0.00 0.00 1.98
367 368 6.095440 ACCATGGCTTACACAAACAATCTATC 59.905 38.462 13.04 0.00 0.00 2.08
368 369 6.319658 CCATGGCTTACACAAACAATCTATCT 59.680 38.462 0.00 0.00 0.00 1.98
369 370 7.498900 CCATGGCTTACACAAACAATCTATCTA 59.501 37.037 0.00 0.00 0.00 1.98
370 371 9.060347 CATGGCTTACACAAACAATCTATCTAT 57.940 33.333 0.00 0.00 0.00 1.98
407 409 4.330250 GGGTTCTAGTTAAGTTGGGGTTC 58.670 47.826 0.00 0.00 0.00 3.62
414 416 2.681344 GTTAAGTTGGGGTTCGGCTATG 59.319 50.000 0.00 0.00 0.00 2.23
423 425 4.204799 GGGGTTCGGCTATGTTTTAGAAT 58.795 43.478 0.00 0.00 0.00 2.40
498 500 9.912634 TTTTCACCTTCTTTATATTCTTTGCTG 57.087 29.630 0.00 0.00 0.00 4.41
499 501 8.862325 TTCACCTTCTTTATATTCTTTGCTGA 57.138 30.769 0.00 0.00 0.00 4.26
500 502 8.862325 TCACCTTCTTTATATTCTTTGCTGAA 57.138 30.769 0.00 0.00 0.00 3.02
501 503 9.295825 TCACCTTCTTTATATTCTTTGCTGAAA 57.704 29.630 0.00 0.00 0.00 2.69
502 504 9.912634 CACCTTCTTTATATTCTTTGCTGAAAA 57.087 29.630 0.00 0.00 0.00 2.29
564 566 2.223112 CGGAAATGTCACATACTGCAGC 60.223 50.000 15.27 0.00 0.00 5.25
573 575 1.019673 CATACTGCAGCCATGTCACC 58.980 55.000 15.27 0.00 0.00 4.02
582 584 2.624838 CAGCCATGTCACCTTCTTGTTT 59.375 45.455 0.00 0.00 0.00 2.83
583 585 3.820467 CAGCCATGTCACCTTCTTGTTTA 59.180 43.478 0.00 0.00 0.00 2.01
584 586 3.821033 AGCCATGTCACCTTCTTGTTTAC 59.179 43.478 0.00 0.00 0.00 2.01
585 587 3.821033 GCCATGTCACCTTCTTGTTTACT 59.179 43.478 0.00 0.00 0.00 2.24
586 588 4.278419 GCCATGTCACCTTCTTGTTTACTT 59.722 41.667 0.00 0.00 0.00 2.24
587 589 5.221244 GCCATGTCACCTTCTTGTTTACTTT 60.221 40.000 0.00 0.00 0.00 2.66
588 590 6.682861 GCCATGTCACCTTCTTGTTTACTTTT 60.683 38.462 0.00 0.00 0.00 2.27
589 591 7.469456 GCCATGTCACCTTCTTGTTTACTTTTA 60.469 37.037 0.00 0.00 0.00 1.52
590 592 8.076178 CCATGTCACCTTCTTGTTTACTTTTAG 58.924 37.037 0.00 0.00 0.00 1.85
591 593 7.023197 TGTCACCTTCTTGTTTACTTTTAGC 57.977 36.000 0.00 0.00 0.00 3.09
592 594 6.600032 TGTCACCTTCTTGTTTACTTTTAGCA 59.400 34.615 0.00 0.00 0.00 3.49
593 595 7.121463 TGTCACCTTCTTGTTTACTTTTAGCAA 59.879 33.333 0.00 0.00 0.00 3.91
594 596 7.431376 GTCACCTTCTTGTTTACTTTTAGCAAC 59.569 37.037 0.00 0.00 0.00 4.17
595 597 7.338449 TCACCTTCTTGTTTACTTTTAGCAACT 59.662 33.333 0.00 0.00 0.00 3.16
596 598 7.973944 CACCTTCTTGTTTACTTTTAGCAACTT 59.026 33.333 0.00 0.00 0.00 2.66
597 599 8.528643 ACCTTCTTGTTTACTTTTAGCAACTTT 58.471 29.630 0.00 0.00 0.00 2.66
598 600 8.807581 CCTTCTTGTTTACTTTTAGCAACTTTG 58.192 33.333 0.00 0.00 0.00 2.77
599 601 9.353999 CTTCTTGTTTACTTTTAGCAACTTTGT 57.646 29.630 0.00 0.00 0.00 2.83
600 602 9.699703 TTCTTGTTTACTTTTAGCAACTTTGTT 57.300 25.926 0.00 0.00 0.00 2.83
601 603 9.699703 TCTTGTTTACTTTTAGCAACTTTGTTT 57.300 25.926 0.00 0.00 0.00 2.83
604 606 9.477484 TGTTTACTTTTAGCAACTTTGTTTTGA 57.523 25.926 0.00 0.00 0.00 2.69
605 607 9.952341 GTTTACTTTTAGCAACTTTGTTTTGAG 57.048 29.630 0.00 0.00 0.00 3.02
606 608 8.696410 TTACTTTTAGCAACTTTGTTTTGAGG 57.304 30.769 0.00 0.00 0.00 3.86
607 609 6.106003 ACTTTTAGCAACTTTGTTTTGAGGG 58.894 36.000 0.00 0.00 0.00 4.30
618 620 7.787028 ACTTTGTTTTGAGGGTATTTTTAGCA 58.213 30.769 0.00 0.00 0.00 3.49
635 637 8.655651 TTTTTAGCAACTTTCTTGGTTAATGG 57.344 30.769 0.00 0.00 0.00 3.16
664 666 9.603189 TTTTTAGGGGTAAATCTTGGTTAATGA 57.397 29.630 0.00 0.00 0.00 2.57
665 667 9.603189 TTTTAGGGGTAAATCTTGGTTAATGAA 57.397 29.630 0.00 0.00 0.00 2.57
666 668 8.584063 TTAGGGGTAAATCTTGGTTAATGAAC 57.416 34.615 0.00 0.00 34.56 3.18
677 737 2.159296 GGTTAATGAACGGCCCATGAAC 60.159 50.000 10.74 10.74 35.56 3.18
679 739 1.312371 AATGAACGGCCCATGAACGG 61.312 55.000 0.00 0.00 0.00 4.44
695 755 2.669240 GGCCCGCTACTTTCAGGT 59.331 61.111 0.00 0.00 0.00 4.00
710 770 0.537371 CAGGTCCCTCAACCAACCAC 60.537 60.000 0.00 0.00 42.12 4.16
725 785 2.358737 CACGTCCACTTGAGGCCC 60.359 66.667 0.00 0.00 31.96 5.80
726 786 4.003788 ACGTCCACTTGAGGCCCG 62.004 66.667 0.00 0.00 31.96 6.13
744 804 4.735132 CCCAGCCGCGTCTCGAAA 62.735 66.667 4.92 0.00 41.67 3.46
745 805 3.181967 CCAGCCGCGTCTCGAAAG 61.182 66.667 4.92 0.00 41.67 2.62
766 827 1.062880 TCGAAACCGCAGAACAAACAC 59.937 47.619 0.00 0.00 0.00 3.32
767 828 1.462791 GAAACCGCAGAACAAACACG 58.537 50.000 0.00 0.00 0.00 4.49
770 831 1.654137 CCGCAGAACAAACACGCAC 60.654 57.895 0.00 0.00 0.00 5.34
771 832 1.061729 CGCAGAACAAACACGCACA 59.938 52.632 0.00 0.00 0.00 4.57
772 833 0.522286 CGCAGAACAAACACGCACAA 60.522 50.000 0.00 0.00 0.00 3.33
774 835 1.989165 GCAGAACAAACACGCACAAAA 59.011 42.857 0.00 0.00 0.00 2.44
775 836 2.027926 GCAGAACAAACACGCACAAAAG 59.972 45.455 0.00 0.00 0.00 2.27
776 837 2.027926 CAGAACAAACACGCACAAAAGC 59.972 45.455 0.00 0.00 0.00 3.51
777 838 2.094752 AGAACAAACACGCACAAAAGCT 60.095 40.909 0.00 0.00 0.00 3.74
778 839 3.127895 AGAACAAACACGCACAAAAGCTA 59.872 39.130 0.00 0.00 0.00 3.32
779 840 3.495670 ACAAACACGCACAAAAGCTAA 57.504 38.095 0.00 0.00 0.00 3.09
780 841 4.040445 ACAAACACGCACAAAAGCTAAT 57.960 36.364 0.00 0.00 0.00 1.73
782 843 5.583495 ACAAACACGCACAAAAGCTAATAA 58.417 33.333 0.00 0.00 0.00 1.40
839 907 1.272490 CTCCCGCGCTATTAATGGAGA 59.728 52.381 15.92 0.00 41.51 3.71
873 941 2.084546 GCGACCCAATTTTAGCTCAGT 58.915 47.619 0.00 0.00 0.00 3.41
940 1008 2.049063 CGGAGCTATACGCAGGCC 60.049 66.667 0.00 0.00 42.61 5.19
998 1066 3.154473 CATCGGGGAAGGAGGCGA 61.154 66.667 0.00 0.00 0.00 5.54
2709 2783 0.981183 ACGGCTACTCCATGAACCAA 59.019 50.000 0.00 0.00 34.01 3.67
2818 2892 1.313475 CCCCCTGCCTACTACCTCA 59.687 63.158 0.00 0.00 0.00 3.86
2914 2988 1.227031 CGTGCGTCCGCCCTATTAA 60.227 57.895 9.43 0.00 41.09 1.40
2915 2989 0.599204 CGTGCGTCCGCCCTATTAAT 60.599 55.000 9.43 0.00 41.09 1.40
2916 2990 1.589803 GTGCGTCCGCCCTATTAATT 58.410 50.000 9.43 0.00 41.09 1.40
2917 2991 2.758009 GTGCGTCCGCCCTATTAATTA 58.242 47.619 9.43 0.00 41.09 1.40
2918 2992 2.735134 GTGCGTCCGCCCTATTAATTAG 59.265 50.000 9.43 0.00 41.09 1.73
2919 2993 2.629137 TGCGTCCGCCCTATTAATTAGA 59.371 45.455 9.43 0.00 41.09 2.10
2920 2994 3.259876 TGCGTCCGCCCTATTAATTAGAT 59.740 43.478 9.43 0.00 41.09 1.98
2921 2995 3.617263 GCGTCCGCCCTATTAATTAGATG 59.383 47.826 0.00 0.00 34.56 2.90
2922 2996 3.617263 CGTCCGCCCTATTAATTAGATGC 59.383 47.826 0.00 0.00 0.00 3.91
2981 3059 4.174009 AGTACATAATAATAGCAGGCGCG 58.826 43.478 0.00 0.00 45.49 6.86
2995 3073 3.848554 GCAGGCGCGGATTTAAATTCTAC 60.849 47.826 8.83 0.00 0.00 2.59
2997 3075 3.808174 AGGCGCGGATTTAAATTCTACTC 59.192 43.478 8.83 0.00 0.00 2.59
2998 3076 3.059120 GGCGCGGATTTAAATTCTACTCC 60.059 47.826 8.83 0.00 0.00 3.85
2999 3077 3.059120 GCGCGGATTTAAATTCTACTCCC 60.059 47.826 8.83 0.00 0.00 4.30
3028 3106 5.817816 CACCGAGATATCTAATTAATGGCCC 59.182 44.000 4.89 0.00 0.00 5.80
3044 3122 1.486726 GGCCCTACTTATGCTCACACT 59.513 52.381 0.00 0.00 0.00 3.55
3045 3123 2.698797 GGCCCTACTTATGCTCACACTA 59.301 50.000 0.00 0.00 0.00 2.74
3046 3124 3.243907 GGCCCTACTTATGCTCACACTAG 60.244 52.174 0.00 0.00 0.00 2.57
3052 3130 7.868415 CCCTACTTATGCTCACACTAGTAATTC 59.132 40.741 0.00 0.00 29.51 2.17
3076 3154 8.012957 TCATGTTTTTAAAGTTTCCTAAGGCA 57.987 30.769 0.00 0.00 0.00 4.75
3077 3155 8.478877 TCATGTTTTTAAAGTTTCCTAAGGCAA 58.521 29.630 0.00 0.00 0.00 4.52
3078 3156 9.103861 CATGTTTTTAAAGTTTCCTAAGGCAAA 57.896 29.630 0.00 0.00 0.00 3.68
3079 3157 8.710835 TGTTTTTAAAGTTTCCTAAGGCAAAG 57.289 30.769 0.00 0.00 0.00 2.77
3080 3158 8.315482 TGTTTTTAAAGTTTCCTAAGGCAAAGT 58.685 29.630 0.00 0.00 0.00 2.66
3081 3159 9.158233 GTTTTTAAAGTTTCCTAAGGCAAAGTT 57.842 29.630 0.00 0.00 0.00 2.66
3082 3160 9.727859 TTTTTAAAGTTTCCTAAGGCAAAGTTT 57.272 25.926 11.60 11.60 38.26 2.66
3083 3161 9.727859 TTTTAAAGTTTCCTAAGGCAAAGTTTT 57.272 25.926 11.93 4.57 36.78 2.43
3084 3162 9.727859 TTTAAAGTTTCCTAAGGCAAAGTTTTT 57.272 25.926 11.93 0.00 36.78 1.94
3102 3180 2.413310 TTTTTCCGACCCATCCTAGC 57.587 50.000 0.00 0.00 0.00 3.42
3103 3181 0.544697 TTTTCCGACCCATCCTAGCC 59.455 55.000 0.00 0.00 0.00 3.93
3104 3182 1.682451 TTTCCGACCCATCCTAGCCG 61.682 60.000 0.00 0.00 0.00 5.52
3105 3183 4.301027 CCGACCCATCCTAGCCGC 62.301 72.222 0.00 0.00 0.00 6.53
3106 3184 3.536917 CGACCCATCCTAGCCGCA 61.537 66.667 0.00 0.00 0.00 5.69
3107 3185 2.872388 CGACCCATCCTAGCCGCAT 61.872 63.158 0.00 0.00 0.00 4.73
3108 3186 1.004440 GACCCATCCTAGCCGCATC 60.004 63.158 0.00 0.00 0.00 3.91
3109 3187 2.348998 CCCATCCTAGCCGCATCC 59.651 66.667 0.00 0.00 0.00 3.51
3110 3188 2.047844 CCATCCTAGCCGCATCCG 60.048 66.667 0.00 0.00 0.00 4.18
3111 3189 2.740055 CATCCTAGCCGCATCCGC 60.740 66.667 0.00 0.00 0.00 5.54
3121 3199 3.993234 GCATCCGCGCATCTCACG 61.993 66.667 8.75 0.00 0.00 4.35
3122 3200 2.278792 CATCCGCGCATCTCACGA 60.279 61.111 8.75 0.00 0.00 4.35
3123 3201 1.662760 CATCCGCGCATCTCACGAT 60.663 57.895 8.75 0.00 0.00 3.73
3124 3202 1.372251 ATCCGCGCATCTCACGATC 60.372 57.895 8.75 0.00 0.00 3.69
3125 3203 1.800283 ATCCGCGCATCTCACGATCT 61.800 55.000 8.75 0.00 0.00 2.75
3126 3204 1.589993 CCGCGCATCTCACGATCTT 60.590 57.895 8.75 0.00 0.00 2.40
3137 3215 2.762459 CGATCTTCCCGACCCCCA 60.762 66.667 0.00 0.00 0.00 4.96
3359 3437 1.888436 ATGGAGCAGCGAAGTTCCGA 61.888 55.000 0.00 0.00 41.31 4.55
3492 3570 1.921869 AATCTGGCCGGTCGGGATTT 61.922 55.000 16.52 3.87 38.47 2.17
3494 3572 3.323286 TGGCCGGTCGGGATTTGA 61.323 61.111 11.60 0.00 38.47 2.69
3712 3790 2.690510 TCACCGGCATCCATGGGA 60.691 61.111 13.02 0.00 35.55 4.37
3753 3831 1.480954 GCGGTTGTCTCTGGATCCTTA 59.519 52.381 14.23 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.081349 TGAAAAACAAACTTACACTGTGTGAG 58.919 34.615 25.56 25.56 39.55 3.51
7 8 6.971602 TGAAAAACAAACTTACACTGTGTGA 58.028 32.000 22.97 14.22 36.96 3.58
8 9 7.168302 TGTTGAAAAACAAACTTACACTGTGTG 59.832 33.333 22.97 10.01 40.36 3.82
9 10 7.203910 TGTTGAAAAACAAACTTACACTGTGT 58.796 30.769 18.51 18.51 40.36 3.72
10 11 7.630470 TGTTGAAAAACAAACTTACACTGTG 57.370 32.000 6.19 6.19 40.36 3.66
11 12 9.915629 TTATGTTGAAAAACAAACTTACACTGT 57.084 25.926 0.00 0.00 40.36 3.55
40 41 8.772250 TCACAATCCTTCTAACTATCCATTCTT 58.228 33.333 0.00 0.00 0.00 2.52
41 42 8.324191 TCACAATCCTTCTAACTATCCATTCT 57.676 34.615 0.00 0.00 0.00 2.40
44 45 9.386122 AGTATCACAATCCTTCTAACTATCCAT 57.614 33.333 0.00 0.00 0.00 3.41
45 46 8.783660 AGTATCACAATCCTTCTAACTATCCA 57.216 34.615 0.00 0.00 0.00 3.41
46 47 9.699703 GAAGTATCACAATCCTTCTAACTATCC 57.300 37.037 0.00 0.00 32.49 2.59
47 48 9.699703 GGAAGTATCACAATCCTTCTAACTATC 57.300 37.037 0.00 0.00 34.96 2.08
48 49 9.213777 TGGAAGTATCACAATCCTTCTAACTAT 57.786 33.333 0.00 0.00 34.96 2.12
49 50 8.603898 TGGAAGTATCACAATCCTTCTAACTA 57.396 34.615 0.00 0.00 34.96 2.24
50 51 7.496346 TGGAAGTATCACAATCCTTCTAACT 57.504 36.000 0.00 0.00 34.96 2.24
51 52 8.738645 AATGGAAGTATCACAATCCTTCTAAC 57.261 34.615 0.00 0.00 34.96 2.34
52 53 8.548025 TGAATGGAAGTATCACAATCCTTCTAA 58.452 33.333 0.00 0.00 34.96 2.10
53 54 8.089625 TGAATGGAAGTATCACAATCCTTCTA 57.910 34.615 0.00 0.00 34.96 2.10
54 55 6.962182 TGAATGGAAGTATCACAATCCTTCT 58.038 36.000 0.00 0.00 34.96 2.85
55 56 6.825721 ACTGAATGGAAGTATCACAATCCTTC 59.174 38.462 0.00 0.00 34.05 3.46
56 57 6.725364 ACTGAATGGAAGTATCACAATCCTT 58.275 36.000 0.00 0.00 33.02 3.36
57 58 6.319048 ACTGAATGGAAGTATCACAATCCT 57.681 37.500 0.00 0.00 33.02 3.24
58 59 6.708054 CCTACTGAATGGAAGTATCACAATCC 59.292 42.308 0.00 0.00 30.00 3.01
59 60 6.708054 CCCTACTGAATGGAAGTATCACAATC 59.292 42.308 0.00 0.00 30.00 2.67
60 61 6.386927 TCCCTACTGAATGGAAGTATCACAAT 59.613 38.462 0.00 0.00 30.00 2.71
61 62 5.724370 TCCCTACTGAATGGAAGTATCACAA 59.276 40.000 0.00 0.00 30.00 3.33
62 63 5.128827 GTCCCTACTGAATGGAAGTATCACA 59.871 44.000 0.00 0.00 30.00 3.58
63 64 5.453480 GGTCCCTACTGAATGGAAGTATCAC 60.453 48.000 0.00 0.00 30.00 3.06
64 65 4.654262 GGTCCCTACTGAATGGAAGTATCA 59.346 45.833 0.00 0.00 30.00 2.15
65 66 4.654262 TGGTCCCTACTGAATGGAAGTATC 59.346 45.833 0.00 0.00 30.00 2.24
66 67 4.631234 TGGTCCCTACTGAATGGAAGTAT 58.369 43.478 0.00 0.00 30.00 2.12
67 68 4.069312 TGGTCCCTACTGAATGGAAGTA 57.931 45.455 0.00 0.00 0.00 2.24
68 69 2.915869 TGGTCCCTACTGAATGGAAGT 58.084 47.619 0.00 0.00 0.00 3.01
69 70 4.010349 GTTTGGTCCCTACTGAATGGAAG 58.990 47.826 0.00 0.00 0.00 3.46
70 71 3.245122 GGTTTGGTCCCTACTGAATGGAA 60.245 47.826 0.00 0.00 0.00 3.53
71 72 2.307686 GGTTTGGTCCCTACTGAATGGA 59.692 50.000 0.00 0.00 0.00 3.41
72 73 2.620627 GGGTTTGGTCCCTACTGAATGG 60.621 54.545 0.00 0.00 43.85 3.16
73 74 2.723273 GGGTTTGGTCCCTACTGAATG 58.277 52.381 0.00 0.00 43.85 2.67
90 91 4.638865 GCATCAAATCGTTAAACCTAGGGT 59.361 41.667 14.81 2.44 37.65 4.34
91 92 4.638421 TGCATCAAATCGTTAAACCTAGGG 59.362 41.667 14.81 0.00 0.00 3.53
92 93 5.811399 TGCATCAAATCGTTAAACCTAGG 57.189 39.130 7.41 7.41 0.00 3.02
93 94 6.785191 ACATGCATCAAATCGTTAAACCTAG 58.215 36.000 0.00 0.00 0.00 3.02
94 95 6.597672 AGACATGCATCAAATCGTTAAACCTA 59.402 34.615 0.00 0.00 0.00 3.08
95 96 5.415701 AGACATGCATCAAATCGTTAAACCT 59.584 36.000 0.00 0.00 0.00 3.50
96 97 5.640732 AGACATGCATCAAATCGTTAAACC 58.359 37.500 0.00 0.00 0.00 3.27
97 98 6.314018 TGAGACATGCATCAAATCGTTAAAC 58.686 36.000 0.00 0.00 0.00 2.01
98 99 6.493449 TGAGACATGCATCAAATCGTTAAA 57.507 33.333 0.00 0.00 0.00 1.52
99 100 6.682423 ATGAGACATGCATCAAATCGTTAA 57.318 33.333 0.00 0.00 0.00 2.01
100 101 6.682423 AATGAGACATGCATCAAATCGTTA 57.318 33.333 0.00 0.00 0.00 3.18
101 102 5.571784 AATGAGACATGCATCAAATCGTT 57.428 34.783 0.00 0.00 0.00 3.85
102 103 6.682423 TTAATGAGACATGCATCAAATCGT 57.318 33.333 0.00 0.00 0.00 3.73
103 104 7.136772 ACATTAATGAGACATGCATCAAATCG 58.863 34.615 22.16 0.00 0.00 3.34
104 105 9.608617 CTACATTAATGAGACATGCATCAAATC 57.391 33.333 22.16 0.00 0.00 2.17
105 106 9.128404 ACTACATTAATGAGACATGCATCAAAT 57.872 29.630 22.16 0.00 0.00 2.32
106 107 8.510243 ACTACATTAATGAGACATGCATCAAA 57.490 30.769 22.16 0.00 0.00 2.69
107 108 7.042523 CGACTACATTAATGAGACATGCATCAA 60.043 37.037 22.16 0.00 0.00 2.57
108 109 6.421801 CGACTACATTAATGAGACATGCATCA 59.578 38.462 22.16 3.17 0.00 3.07
109 110 6.642540 TCGACTACATTAATGAGACATGCATC 59.357 38.462 22.16 6.09 0.00 3.91
110 111 6.515832 TCGACTACATTAATGAGACATGCAT 58.484 36.000 22.16 0.00 0.00 3.96
111 112 5.901552 TCGACTACATTAATGAGACATGCA 58.098 37.500 22.16 0.00 0.00 3.96
112 113 6.477033 AGTTCGACTACATTAATGAGACATGC 59.523 38.462 22.16 5.91 0.00 4.06
113 114 7.096844 CGAGTTCGACTACATTAATGAGACATG 60.097 40.741 22.16 7.14 43.02 3.21
114 115 6.913132 CGAGTTCGACTACATTAATGAGACAT 59.087 38.462 22.16 1.62 43.02 3.06
115 116 6.093082 TCGAGTTCGACTACATTAATGAGACA 59.907 38.462 22.16 3.50 44.22 3.41
116 117 6.484540 TCGAGTTCGACTACATTAATGAGAC 58.515 40.000 22.16 12.93 44.22 3.36
117 118 6.673154 TCGAGTTCGACTACATTAATGAGA 57.327 37.500 22.16 8.34 44.22 3.27
135 136 5.451242 GGCTGAAAACTAGATGAGATCGAGT 60.451 44.000 0.00 0.00 45.34 4.18
136 137 4.981674 GGCTGAAAACTAGATGAGATCGAG 59.018 45.833 0.00 0.00 37.92 4.04
137 138 4.402474 TGGCTGAAAACTAGATGAGATCGA 59.598 41.667 0.00 0.00 0.00 3.59
138 139 4.686972 TGGCTGAAAACTAGATGAGATCG 58.313 43.478 0.00 0.00 0.00 3.69
139 140 5.055812 CCTGGCTGAAAACTAGATGAGATC 58.944 45.833 0.00 0.00 0.00 2.75
140 141 4.685575 GCCTGGCTGAAAACTAGATGAGAT 60.686 45.833 12.43 0.00 0.00 2.75
141 142 3.369892 GCCTGGCTGAAAACTAGATGAGA 60.370 47.826 12.43 0.00 0.00 3.27
142 143 2.941720 GCCTGGCTGAAAACTAGATGAG 59.058 50.000 12.43 0.00 0.00 2.90
143 144 2.677902 CGCCTGGCTGAAAACTAGATGA 60.678 50.000 17.92 0.00 0.00 2.92
144 145 1.667724 CGCCTGGCTGAAAACTAGATG 59.332 52.381 17.92 0.00 0.00 2.90
145 146 1.279271 ACGCCTGGCTGAAAACTAGAT 59.721 47.619 17.92 0.00 0.00 1.98
146 147 0.685097 ACGCCTGGCTGAAAACTAGA 59.315 50.000 17.92 0.00 0.00 2.43
147 148 1.197721 CAACGCCTGGCTGAAAACTAG 59.802 52.381 17.92 0.00 0.00 2.57
148 149 1.234821 CAACGCCTGGCTGAAAACTA 58.765 50.000 17.92 0.00 0.00 2.24
149 150 0.751643 ACAACGCCTGGCTGAAAACT 60.752 50.000 17.92 0.00 0.00 2.66
150 151 0.594796 CACAACGCCTGGCTGAAAAC 60.595 55.000 17.92 0.00 0.00 2.43
151 152 1.034838 ACACAACGCCTGGCTGAAAA 61.035 50.000 17.92 0.00 0.00 2.29
152 153 1.453015 ACACAACGCCTGGCTGAAA 60.453 52.632 17.92 0.00 0.00 2.69
153 154 2.186160 CACACAACGCCTGGCTGAA 61.186 57.895 17.92 0.00 0.00 3.02
154 155 2.591429 CACACAACGCCTGGCTGA 60.591 61.111 17.92 0.00 0.00 4.26
155 156 1.518056 ATTCACACAACGCCTGGCTG 61.518 55.000 17.92 11.75 0.00 4.85
156 157 1.228245 ATTCACACAACGCCTGGCT 60.228 52.632 17.92 0.55 0.00 4.75
157 158 1.081242 CATTCACACAACGCCTGGC 60.081 57.895 9.11 9.11 0.00 4.85
158 159 1.081242 GCATTCACACAACGCCTGG 60.081 57.895 0.00 0.00 0.00 4.45
159 160 0.241749 ATGCATTCACACAACGCCTG 59.758 50.000 0.00 0.00 0.00 4.85
160 161 0.241749 CATGCATTCACACAACGCCT 59.758 50.000 0.00 0.00 0.00 5.52
161 162 0.039256 ACATGCATTCACACAACGCC 60.039 50.000 0.00 0.00 0.00 5.68
162 163 1.054574 CACATGCATTCACACAACGC 58.945 50.000 0.00 0.00 0.00 4.84
163 164 1.054574 GCACATGCATTCACACAACG 58.945 50.000 0.00 0.00 41.59 4.10
175 176 1.011968 CATGCCACAACTGCACATGC 61.012 55.000 0.00 0.00 42.38 4.06
176 177 0.599060 TCATGCCACAACTGCACATG 59.401 50.000 5.15 5.15 42.38 3.21
177 178 0.885879 CTCATGCCACAACTGCACAT 59.114 50.000 0.00 0.00 42.38 3.21
178 179 0.466007 ACTCATGCCACAACTGCACA 60.466 50.000 0.00 0.00 42.38 4.57
179 180 0.039798 CACTCATGCCACAACTGCAC 60.040 55.000 0.00 0.00 42.38 4.57
180 181 1.174078 CCACTCATGCCACAACTGCA 61.174 55.000 0.00 0.00 43.97 4.41
181 182 1.582968 CCACTCATGCCACAACTGC 59.417 57.895 0.00 0.00 0.00 4.40
182 183 0.538057 ACCCACTCATGCCACAACTG 60.538 55.000 0.00 0.00 0.00 3.16
183 184 1.064003 TACCCACTCATGCCACAACT 58.936 50.000 0.00 0.00 0.00 3.16
184 185 1.745087 CATACCCACTCATGCCACAAC 59.255 52.381 0.00 0.00 0.00 3.32
185 186 1.354031 ACATACCCACTCATGCCACAA 59.646 47.619 0.00 0.00 0.00 3.33
186 187 0.991146 ACATACCCACTCATGCCACA 59.009 50.000 0.00 0.00 0.00 4.17
187 188 1.340017 ACACATACCCACTCATGCCAC 60.340 52.381 0.00 0.00 0.00 5.01
188 189 0.991146 ACACATACCCACTCATGCCA 59.009 50.000 0.00 0.00 0.00 4.92
189 190 1.340017 ACACACATACCCACTCATGCC 60.340 52.381 0.00 0.00 0.00 4.40
190 191 1.739466 CACACACATACCCACTCATGC 59.261 52.381 0.00 0.00 0.00 4.06
191 192 1.739466 GCACACACATACCCACTCATG 59.261 52.381 0.00 0.00 0.00 3.07
192 193 1.350684 TGCACACACATACCCACTCAT 59.649 47.619 0.00 0.00 0.00 2.90
193 194 0.761802 TGCACACACATACCCACTCA 59.238 50.000 0.00 0.00 0.00 3.41
194 195 1.535462 GTTGCACACACATACCCACTC 59.465 52.381 0.00 0.00 0.00 3.51
195 196 1.133945 TGTTGCACACACATACCCACT 60.134 47.619 0.00 0.00 0.00 4.00
196 197 1.313772 TGTTGCACACACATACCCAC 58.686 50.000 0.00 0.00 0.00 4.61
197 198 3.808984 TGTTGCACACACATACCCA 57.191 47.368 0.00 0.00 0.00 4.51
209 210 1.335182 CCGGTTACAATGTGTGTTGCA 59.665 47.619 0.00 0.00 41.98 4.08
210 211 1.335496 ACCGGTTACAATGTGTGTTGC 59.665 47.619 0.00 0.00 41.98 4.17
211 212 2.356382 ACACCGGTTACAATGTGTGTTG 59.644 45.455 2.97 0.00 41.98 3.33
212 213 2.645802 ACACCGGTTACAATGTGTGTT 58.354 42.857 2.97 0.00 41.98 3.32
213 214 2.335316 ACACCGGTTACAATGTGTGT 57.665 45.000 2.97 0.00 44.82 3.72
214 215 3.314080 AGAAACACCGGTTACAATGTGTG 59.686 43.478 2.97 0.00 40.83 3.82
215 216 3.547746 AGAAACACCGGTTACAATGTGT 58.452 40.909 2.97 0.00 43.36 3.72
216 217 3.363575 CGAGAAACACCGGTTACAATGTG 60.364 47.826 2.97 0.00 35.82 3.21
217 218 2.803956 CGAGAAACACCGGTTACAATGT 59.196 45.455 2.97 0.00 35.82 2.71
218 219 3.061322 TCGAGAAACACCGGTTACAATG 58.939 45.455 2.97 0.00 35.82 2.82
219 220 3.389925 TCGAGAAACACCGGTTACAAT 57.610 42.857 2.97 0.00 35.82 2.71
220 221 2.886862 TCGAGAAACACCGGTTACAA 57.113 45.000 2.97 0.00 35.82 2.41
221 222 2.886862 TTCGAGAAACACCGGTTACA 57.113 45.000 2.97 0.00 35.82 2.41
222 223 5.844301 TTATTTCGAGAAACACCGGTTAC 57.156 39.130 2.97 0.00 35.82 2.50
223 224 7.388500 AGAAATTATTTCGAGAAACACCGGTTA 59.612 33.333 2.97 0.00 44.29 2.85
224 225 5.952526 AATTATTTCGAGAAACACCGGTT 57.047 34.783 2.97 0.00 39.43 4.44
225 226 5.704053 AGAAATTATTTCGAGAAACACCGGT 59.296 36.000 0.00 0.00 44.29 5.28
226 227 6.178239 AGAAATTATTTCGAGAAACACCGG 57.822 37.500 11.43 0.00 44.29 5.28
227 228 7.270579 GGAAAGAAATTATTTCGAGAAACACCG 59.729 37.037 11.43 0.00 44.29 4.94
228 229 7.541091 GGGAAAGAAATTATTTCGAGAAACACC 59.459 37.037 11.43 8.00 44.29 4.16
229 230 8.079809 TGGGAAAGAAATTATTTCGAGAAACAC 58.920 33.333 11.43 4.54 44.29 3.32
230 231 8.172352 TGGGAAAGAAATTATTTCGAGAAACA 57.828 30.769 11.43 6.12 44.29 2.83
231 232 8.912658 GTTGGGAAAGAAATTATTTCGAGAAAC 58.087 33.333 11.43 9.13 44.29 2.78
232 233 8.634444 TGTTGGGAAAGAAATTATTTCGAGAAA 58.366 29.630 11.43 0.40 44.29 2.52
233 234 8.172352 TGTTGGGAAAGAAATTATTTCGAGAA 57.828 30.769 11.43 0.00 44.29 2.87
234 235 7.753309 TGTTGGGAAAGAAATTATTTCGAGA 57.247 32.000 11.43 0.00 44.29 4.04
235 236 8.243426 TCATGTTGGGAAAGAAATTATTTCGAG 58.757 33.333 11.43 0.00 44.29 4.04
236 237 8.116651 TCATGTTGGGAAAGAAATTATTTCGA 57.883 30.769 11.43 0.00 44.29 3.71
237 238 8.243426 TCTCATGTTGGGAAAGAAATTATTTCG 58.757 33.333 11.43 0.00 44.29 3.46
238 239 9.578439 CTCTCATGTTGGGAAAGAAATTATTTC 57.422 33.333 9.47 9.47 39.96 2.17
239 240 9.312904 TCTCTCATGTTGGGAAAGAAATTATTT 57.687 29.630 0.00 0.00 0.00 1.40
240 241 8.743714 GTCTCTCATGTTGGGAAAGAAATTATT 58.256 33.333 0.00 0.00 0.00 1.40
241 242 8.112183 AGTCTCTCATGTTGGGAAAGAAATTAT 58.888 33.333 0.00 0.00 0.00 1.28
242 243 7.391554 CAGTCTCTCATGTTGGGAAAGAAATTA 59.608 37.037 0.00 0.00 0.00 1.40
243 244 6.208204 CAGTCTCTCATGTTGGGAAAGAAATT 59.792 38.462 0.00 0.00 0.00 1.82
244 245 5.709164 CAGTCTCTCATGTTGGGAAAGAAAT 59.291 40.000 0.00 0.00 0.00 2.17
245 246 5.065914 CAGTCTCTCATGTTGGGAAAGAAA 58.934 41.667 0.00 0.00 0.00 2.52
246 247 4.103153 ACAGTCTCTCATGTTGGGAAAGAA 59.897 41.667 0.00 0.00 0.00 2.52
247 248 3.648067 ACAGTCTCTCATGTTGGGAAAGA 59.352 43.478 0.00 0.00 0.00 2.52
248 249 3.750130 CACAGTCTCTCATGTTGGGAAAG 59.250 47.826 0.00 0.00 0.00 2.62
249 250 3.496692 CCACAGTCTCTCATGTTGGGAAA 60.497 47.826 0.00 0.00 0.00 3.13
250 251 2.038952 CCACAGTCTCTCATGTTGGGAA 59.961 50.000 0.00 0.00 0.00 3.97
251 252 1.625315 CCACAGTCTCTCATGTTGGGA 59.375 52.381 0.00 0.00 0.00 4.37
252 253 1.349026 ACCACAGTCTCTCATGTTGGG 59.651 52.381 0.00 0.00 0.00 4.12
253 254 2.847327 ACCACAGTCTCTCATGTTGG 57.153 50.000 0.00 0.00 0.00 3.77
254 255 4.527509 ACTACCACAGTCTCTCATGTTG 57.472 45.455 0.00 0.00 28.33 3.33
255 256 6.859112 ATTACTACCACAGTCTCTCATGTT 57.141 37.500 0.00 0.00 38.80 2.71
256 257 7.416890 GCTTATTACTACCACAGTCTCTCATGT 60.417 40.741 0.00 0.00 38.80 3.21
257 258 6.920758 GCTTATTACTACCACAGTCTCTCATG 59.079 42.308 0.00 0.00 38.80 3.07
258 259 6.238786 CGCTTATTACTACCACAGTCTCTCAT 60.239 42.308 0.00 0.00 38.80 2.90
259 260 5.066117 CGCTTATTACTACCACAGTCTCTCA 59.934 44.000 0.00 0.00 38.80 3.27
260 261 5.296283 TCGCTTATTACTACCACAGTCTCTC 59.704 44.000 0.00 0.00 38.80 3.20
261 262 5.191426 TCGCTTATTACTACCACAGTCTCT 58.809 41.667 0.00 0.00 38.80 3.10
262 263 5.066246 ACTCGCTTATTACTACCACAGTCTC 59.934 44.000 0.00 0.00 38.80 3.36
263 264 4.948621 ACTCGCTTATTACTACCACAGTCT 59.051 41.667 0.00 0.00 38.80 3.24
264 265 5.035443 CACTCGCTTATTACTACCACAGTC 58.965 45.833 0.00 0.00 38.80 3.51
265 266 4.461781 ACACTCGCTTATTACTACCACAGT 59.538 41.667 0.00 0.00 41.62 3.55
266 267 4.995124 ACACTCGCTTATTACTACCACAG 58.005 43.478 0.00 0.00 0.00 3.66
267 268 6.513806 TTACACTCGCTTATTACTACCACA 57.486 37.500 0.00 0.00 0.00 4.17
268 269 7.816945 TTTTACACTCGCTTATTACTACCAC 57.183 36.000 0.00 0.00 0.00 4.16
269 270 7.546667 CCTTTTTACACTCGCTTATTACTACCA 59.453 37.037 0.00 0.00 0.00 3.25
270 271 7.465111 GCCTTTTTACACTCGCTTATTACTACC 60.465 40.741 0.00 0.00 0.00 3.18
271 272 7.063780 TGCCTTTTTACACTCGCTTATTACTAC 59.936 37.037 0.00 0.00 0.00 2.73
272 273 7.098477 TGCCTTTTTACACTCGCTTATTACTA 58.902 34.615 0.00 0.00 0.00 1.82
273 274 5.935789 TGCCTTTTTACACTCGCTTATTACT 59.064 36.000 0.00 0.00 0.00 2.24
274 275 6.128363 ACTGCCTTTTTACACTCGCTTATTAC 60.128 38.462 0.00 0.00 0.00 1.89
275 276 5.935789 ACTGCCTTTTTACACTCGCTTATTA 59.064 36.000 0.00 0.00 0.00 0.98
276 277 4.760204 ACTGCCTTTTTACACTCGCTTATT 59.240 37.500 0.00 0.00 0.00 1.40
277 278 4.324267 ACTGCCTTTTTACACTCGCTTAT 58.676 39.130 0.00 0.00 0.00 1.73
278 279 3.735591 ACTGCCTTTTTACACTCGCTTA 58.264 40.909 0.00 0.00 0.00 3.09
279 280 2.572290 ACTGCCTTTTTACACTCGCTT 58.428 42.857 0.00 0.00 0.00 4.68
280 281 2.256117 ACTGCCTTTTTACACTCGCT 57.744 45.000 0.00 0.00 0.00 4.93
281 282 3.120304 CCTAACTGCCTTTTTACACTCGC 60.120 47.826 0.00 0.00 0.00 5.03
282 283 3.120304 GCCTAACTGCCTTTTTACACTCG 60.120 47.826 0.00 0.00 0.00 4.18
283 284 4.072839 AGCCTAACTGCCTTTTTACACTC 58.927 43.478 0.00 0.00 0.00 3.51
284 285 4.072839 GAGCCTAACTGCCTTTTTACACT 58.927 43.478 0.00 0.00 0.00 3.55
285 286 3.120304 CGAGCCTAACTGCCTTTTTACAC 60.120 47.826 0.00 0.00 0.00 2.90
286 287 3.071479 CGAGCCTAACTGCCTTTTTACA 58.929 45.455 0.00 0.00 0.00 2.41
287 288 2.418976 CCGAGCCTAACTGCCTTTTTAC 59.581 50.000 0.00 0.00 0.00 2.01
288 289 2.303600 TCCGAGCCTAACTGCCTTTTTA 59.696 45.455 0.00 0.00 0.00 1.52
289 290 1.073284 TCCGAGCCTAACTGCCTTTTT 59.927 47.619 0.00 0.00 0.00 1.94
290 291 0.690762 TCCGAGCCTAACTGCCTTTT 59.309 50.000 0.00 0.00 0.00 2.27
291 292 0.912486 ATCCGAGCCTAACTGCCTTT 59.088 50.000 0.00 0.00 0.00 3.11
292 293 0.179000 CATCCGAGCCTAACTGCCTT 59.821 55.000 0.00 0.00 0.00 4.35
293 294 0.687757 TCATCCGAGCCTAACTGCCT 60.688 55.000 0.00 0.00 0.00 4.75
294 295 0.178068 TTCATCCGAGCCTAACTGCC 59.822 55.000 0.00 0.00 0.00 4.85
295 296 1.291132 GTTCATCCGAGCCTAACTGC 58.709 55.000 0.00 0.00 0.00 4.40
296 297 1.135083 ACGTTCATCCGAGCCTAACTG 60.135 52.381 0.00 0.00 0.00 3.16
297 298 1.183549 ACGTTCATCCGAGCCTAACT 58.816 50.000 0.00 0.00 0.00 2.24
298 299 2.457970 GTACGTTCATCCGAGCCTAAC 58.542 52.381 0.00 0.00 0.00 2.34
299 300 1.064505 CGTACGTTCATCCGAGCCTAA 59.935 52.381 7.22 0.00 0.00 2.69
300 301 0.659427 CGTACGTTCATCCGAGCCTA 59.341 55.000 7.22 0.00 0.00 3.93
301 302 1.310933 ACGTACGTTCATCCGAGCCT 61.311 55.000 16.72 0.00 0.00 4.58
302 303 0.378257 TACGTACGTTCATCCGAGCC 59.622 55.000 27.92 0.00 0.00 4.70
303 304 2.041966 CATACGTACGTTCATCCGAGC 58.958 52.381 27.92 0.00 0.00 5.03
304 305 3.329743 ACATACGTACGTTCATCCGAG 57.670 47.619 27.92 9.87 0.00 4.63
305 306 4.195744 GTACATACGTACGTTCATCCGA 57.804 45.455 27.92 6.75 38.77 4.55
315 316 5.556470 CAATTTGCCAGTGTACATACGTAC 58.444 41.667 0.00 0.00 46.94 3.67
316 317 4.093703 GCAATTTGCCAGTGTACATACGTA 59.906 41.667 10.34 0.00 37.42 3.57
317 318 3.119990 GCAATTTGCCAGTGTACATACGT 60.120 43.478 10.34 0.00 37.42 3.57
318 319 3.120025 TGCAATTTGCCAGTGTACATACG 60.120 43.478 18.27 0.00 44.23 3.06
319 320 4.155826 TCTGCAATTTGCCAGTGTACATAC 59.844 41.667 18.27 0.00 44.23 2.39
320 321 4.155826 GTCTGCAATTTGCCAGTGTACATA 59.844 41.667 18.27 0.00 44.23 2.29
321 322 3.057315 GTCTGCAATTTGCCAGTGTACAT 60.057 43.478 18.27 0.00 44.23 2.29
322 323 2.293122 GTCTGCAATTTGCCAGTGTACA 59.707 45.455 18.27 0.00 44.23 2.90
323 324 2.351738 GGTCTGCAATTTGCCAGTGTAC 60.352 50.000 18.27 9.64 44.23 2.90
324 325 1.885887 GGTCTGCAATTTGCCAGTGTA 59.114 47.619 18.27 0.00 44.23 2.90
325 326 0.675633 GGTCTGCAATTTGCCAGTGT 59.324 50.000 18.27 0.00 44.23 3.55
326 327 0.675083 TGGTCTGCAATTTGCCAGTG 59.325 50.000 18.27 6.67 44.23 3.66
327 328 1.274167 CATGGTCTGCAATTTGCCAGT 59.726 47.619 18.27 0.00 44.23 4.00
328 329 1.404986 CCATGGTCTGCAATTTGCCAG 60.405 52.381 18.27 14.64 44.23 4.85
329 330 0.609151 CCATGGTCTGCAATTTGCCA 59.391 50.000 18.27 9.40 44.23 4.92
330 331 0.741927 GCCATGGTCTGCAATTTGCC 60.742 55.000 18.27 3.86 44.23 4.52
331 332 0.248289 AGCCATGGTCTGCAATTTGC 59.752 50.000 14.67 14.49 45.29 3.68
332 333 2.754946 AAGCCATGGTCTGCAATTTG 57.245 45.000 14.67 0.00 0.00 2.32
333 334 3.056607 GTGTAAGCCATGGTCTGCAATTT 60.057 43.478 14.67 0.00 0.00 1.82
334 335 2.493278 GTGTAAGCCATGGTCTGCAATT 59.507 45.455 14.67 0.00 0.00 2.32
335 336 2.094675 GTGTAAGCCATGGTCTGCAAT 58.905 47.619 14.67 0.00 0.00 3.56
336 337 1.202867 TGTGTAAGCCATGGTCTGCAA 60.203 47.619 14.67 0.00 0.00 4.08
337 338 0.399833 TGTGTAAGCCATGGTCTGCA 59.600 50.000 14.67 7.73 0.00 4.41
338 339 1.533625 TTGTGTAAGCCATGGTCTGC 58.466 50.000 14.67 5.00 0.00 4.26
339 340 2.884012 TGTTTGTGTAAGCCATGGTCTG 59.116 45.455 14.67 0.00 0.00 3.51
340 341 3.222173 TGTTTGTGTAAGCCATGGTCT 57.778 42.857 14.67 8.28 0.00 3.85
341 342 4.218417 AGATTGTTTGTGTAAGCCATGGTC 59.782 41.667 14.67 5.80 0.00 4.02
342 343 4.151883 AGATTGTTTGTGTAAGCCATGGT 58.848 39.130 14.67 0.00 0.00 3.55
343 344 4.789012 AGATTGTTTGTGTAAGCCATGG 57.211 40.909 7.63 7.63 0.00 3.66
344 345 7.325660 AGATAGATTGTTTGTGTAAGCCATG 57.674 36.000 0.00 0.00 0.00 3.66
374 375 9.964408 AACTTAACTAGAACCCCCTATATTAGT 57.036 33.333 0.00 0.00 0.00 2.24
376 377 9.162733 CCAACTTAACTAGAACCCCCTATATTA 57.837 37.037 0.00 0.00 0.00 0.98
377 378 7.073343 CCCAACTTAACTAGAACCCCCTATATT 59.927 40.741 0.00 0.00 0.00 1.28
378 379 6.561454 CCCAACTTAACTAGAACCCCCTATAT 59.439 42.308 0.00 0.00 0.00 0.86
407 409 9.567848 AAATTTGTACATTCTAAAACATAGCCG 57.432 29.630 0.00 0.00 0.00 5.52
453 455 2.584492 AAAAAGTGCGCTTTGCTTCT 57.416 40.000 25.02 7.03 43.52 2.85
473 475 9.295825 TCAGCAAAGAATATAAAGAAGGTGAAA 57.704 29.630 0.00 0.00 0.00 2.69
474 476 8.862325 TCAGCAAAGAATATAAAGAAGGTGAA 57.138 30.769 0.00 0.00 0.00 3.18
475 477 8.862325 TTCAGCAAAGAATATAAAGAAGGTGA 57.138 30.769 0.00 0.00 0.00 4.02
482 484 8.650714 GCACCTTTTTCAGCAAAGAATATAAAG 58.349 33.333 0.00 0.00 36.03 1.85
483 485 8.147058 TGCACCTTTTTCAGCAAAGAATATAAA 58.853 29.630 0.00 0.00 36.03 1.40
486 488 6.100404 TGCACCTTTTTCAGCAAAGAATAT 57.900 33.333 0.00 0.00 36.03 1.28
494 496 3.608316 AAACTTGCACCTTTTTCAGCA 57.392 38.095 0.00 0.00 34.79 4.41
495 497 4.429108 TGTAAACTTGCACCTTTTTCAGC 58.571 39.130 0.00 0.00 0.00 4.26
523 525 5.529791 TCCGATTAAAACGCCAAATGAAAA 58.470 33.333 0.00 0.00 0.00 2.29
528 530 5.474825 ACATTTCCGATTAAAACGCCAAAT 58.525 33.333 0.00 0.00 0.00 2.32
531 533 3.502595 TGACATTTCCGATTAAAACGCCA 59.497 39.130 0.00 0.00 0.00 5.69
534 536 7.425309 CAGTATGTGACATTTCCGATTAAAACG 59.575 37.037 2.29 0.00 0.00 3.60
544 546 2.098117 GGCTGCAGTATGTGACATTTCC 59.902 50.000 16.64 0.00 39.31 3.13
564 566 6.391227 AAAGTAAACAAGAAGGTGACATGG 57.609 37.500 0.00 0.00 0.00 3.66
573 575 9.353999 ACAAAGTTGCTAAAAGTAAACAAGAAG 57.646 29.630 0.00 0.00 0.00 2.85
582 584 7.093684 ACCCTCAAAACAAAGTTGCTAAAAGTA 60.094 33.333 0.00 0.00 0.00 2.24
583 585 6.106003 CCCTCAAAACAAAGTTGCTAAAAGT 58.894 36.000 0.00 0.00 0.00 2.66
584 586 6.106003 ACCCTCAAAACAAAGTTGCTAAAAG 58.894 36.000 0.00 0.00 0.00 2.27
585 587 6.043854 ACCCTCAAAACAAAGTTGCTAAAA 57.956 33.333 0.00 0.00 0.00 1.52
586 588 5.669164 ACCCTCAAAACAAAGTTGCTAAA 57.331 34.783 0.00 0.00 0.00 1.85
587 589 6.969993 ATACCCTCAAAACAAAGTTGCTAA 57.030 33.333 0.00 0.00 0.00 3.09
588 590 6.969993 AATACCCTCAAAACAAAGTTGCTA 57.030 33.333 0.00 0.00 0.00 3.49
589 591 5.869649 AATACCCTCAAAACAAAGTTGCT 57.130 34.783 0.00 0.00 0.00 3.91
590 592 6.918892 AAAATACCCTCAAAACAAAGTTGC 57.081 33.333 0.00 0.00 0.00 4.17
591 593 8.547894 GCTAAAAATACCCTCAAAACAAAGTTG 58.452 33.333 0.00 0.00 0.00 3.16
592 594 8.261522 TGCTAAAAATACCCTCAAAACAAAGTT 58.738 29.630 0.00 0.00 0.00 2.66
593 595 7.787028 TGCTAAAAATACCCTCAAAACAAAGT 58.213 30.769 0.00 0.00 0.00 2.66
594 596 8.547894 GTTGCTAAAAATACCCTCAAAACAAAG 58.452 33.333 0.00 0.00 0.00 2.77
595 597 8.261522 AGTTGCTAAAAATACCCTCAAAACAAA 58.738 29.630 0.00 0.00 0.00 2.83
596 598 7.787028 AGTTGCTAAAAATACCCTCAAAACAA 58.213 30.769 0.00 0.00 0.00 2.83
597 599 7.354751 AGTTGCTAAAAATACCCTCAAAACA 57.645 32.000 0.00 0.00 0.00 2.83
598 600 8.657074 AAAGTTGCTAAAAATACCCTCAAAAC 57.343 30.769 0.00 0.00 0.00 2.43
599 601 8.700973 AGAAAGTTGCTAAAAATACCCTCAAAA 58.299 29.630 0.00 0.00 0.00 2.44
600 602 8.245195 AGAAAGTTGCTAAAAATACCCTCAAA 57.755 30.769 0.00 0.00 0.00 2.69
601 603 7.833285 AGAAAGTTGCTAAAAATACCCTCAA 57.167 32.000 0.00 0.00 0.00 3.02
602 604 7.255801 CCAAGAAAGTTGCTAAAAATACCCTCA 60.256 37.037 0.00 0.00 0.00 3.86
603 605 7.090808 CCAAGAAAGTTGCTAAAAATACCCTC 58.909 38.462 0.00 0.00 0.00 4.30
604 606 6.553476 ACCAAGAAAGTTGCTAAAAATACCCT 59.447 34.615 0.00 0.00 0.00 4.34
605 607 6.755206 ACCAAGAAAGTTGCTAAAAATACCC 58.245 36.000 0.00 0.00 0.00 3.69
606 608 9.752961 TTAACCAAGAAAGTTGCTAAAAATACC 57.247 29.630 0.00 0.00 0.00 2.73
641 643 7.337436 CGTTCATTAACCAAGATTTACCCCTAA 59.663 37.037 0.00 0.00 31.46 2.69
642 644 6.824704 CGTTCATTAACCAAGATTTACCCCTA 59.175 38.462 0.00 0.00 31.46 3.53
643 645 5.650703 CGTTCATTAACCAAGATTTACCCCT 59.349 40.000 0.00 0.00 31.46 4.79
644 646 5.163591 CCGTTCATTAACCAAGATTTACCCC 60.164 44.000 0.00 0.00 31.46 4.95
645 647 5.677852 GCCGTTCATTAACCAAGATTTACCC 60.678 44.000 0.00 0.00 31.46 3.69
646 648 5.337554 GCCGTTCATTAACCAAGATTTACC 58.662 41.667 0.00 0.00 31.46 2.85
647 649 5.337554 GGCCGTTCATTAACCAAGATTTAC 58.662 41.667 0.00 0.00 31.46 2.01
648 650 4.399934 GGGCCGTTCATTAACCAAGATTTA 59.600 41.667 0.00 0.00 31.46 1.40
649 651 3.194755 GGGCCGTTCATTAACCAAGATTT 59.805 43.478 0.00 0.00 31.46 2.17
650 652 2.758423 GGGCCGTTCATTAACCAAGATT 59.242 45.455 0.00 0.00 31.46 2.40
651 653 2.291282 TGGGCCGTTCATTAACCAAGAT 60.291 45.455 0.00 0.00 31.46 2.40
652 654 1.074084 TGGGCCGTTCATTAACCAAGA 59.926 47.619 0.00 0.00 31.46 3.02
653 655 1.540267 TGGGCCGTTCATTAACCAAG 58.460 50.000 0.00 0.00 31.46 3.61
656 658 1.757682 TCATGGGCCGTTCATTAACC 58.242 50.000 0.00 0.00 31.46 2.85
657 659 2.477189 CGTTCATGGGCCGTTCATTAAC 60.477 50.000 0.00 2.16 0.00 2.01
660 662 1.312371 CCGTTCATGGGCCGTTCATT 61.312 55.000 0.00 0.00 0.00 2.57
661 663 1.748879 CCGTTCATGGGCCGTTCAT 60.749 57.895 0.00 0.00 0.00 2.57
663 665 3.810896 GCCGTTCATGGGCCGTTC 61.811 66.667 0.00 0.00 44.97 3.95
677 737 2.511600 CCTGAAAGTAGCGGGCCG 60.512 66.667 24.35 24.35 0.00 6.13
679 739 1.449778 GGACCTGAAAGTAGCGGGC 60.450 63.158 0.00 0.00 35.09 6.13
682 742 0.895530 TGAGGGACCTGAAAGTAGCG 59.104 55.000 0.00 0.00 0.00 4.26
684 744 2.637872 TGGTTGAGGGACCTGAAAGTAG 59.362 50.000 0.00 0.00 40.47 2.57
695 755 1.448497 GACGTGGTTGGTTGAGGGA 59.552 57.895 0.00 0.00 0.00 4.20
727 787 4.735132 TTTCGAGACGCGGCTGGG 62.735 66.667 25.24 12.18 41.33 4.45
728 788 3.181967 CTTTCGAGACGCGGCTGG 61.182 66.667 25.24 21.72 41.33 4.85
740 800 0.856641 TTCTGCGGTTTCGACTTTCG 59.143 50.000 0.00 0.00 42.10 3.46
741 801 1.595794 TGTTCTGCGGTTTCGACTTTC 59.404 47.619 0.00 0.00 39.00 2.62
742 802 1.658994 TGTTCTGCGGTTTCGACTTT 58.341 45.000 0.00 0.00 39.00 2.66
743 803 1.658994 TTGTTCTGCGGTTTCGACTT 58.341 45.000 0.00 0.00 39.00 3.01
744 804 1.329599 GTTTGTTCTGCGGTTTCGACT 59.670 47.619 0.00 0.00 39.00 4.18
745 805 1.062880 TGTTTGTTCTGCGGTTTCGAC 59.937 47.619 0.00 0.00 39.00 4.20
766 827 2.440501 CCGCTTATTAGCTTTTGTGCG 58.559 47.619 13.50 13.50 45.51 5.34
767 828 2.159379 AGCCGCTTATTAGCTTTTGTGC 60.159 45.455 1.77 0.00 45.51 4.57
770 831 8.289618 TCAAATATAGCCGCTTATTAGCTTTTG 58.710 33.333 0.00 0.00 45.51 2.44
771 832 8.391075 TCAAATATAGCCGCTTATTAGCTTTT 57.609 30.769 0.00 0.00 45.51 2.27
772 833 7.979444 TCAAATATAGCCGCTTATTAGCTTT 57.021 32.000 0.00 0.00 45.51 3.51
774 835 6.090898 CGTTCAAATATAGCCGCTTATTAGCT 59.909 38.462 0.00 0.00 45.51 3.32
775 836 6.128634 ACGTTCAAATATAGCCGCTTATTAGC 60.129 38.462 0.00 0.00 44.21 3.09
776 837 7.227461 CACGTTCAAATATAGCCGCTTATTAG 58.773 38.462 0.00 0.00 0.00 1.73
777 838 6.347079 GCACGTTCAAATATAGCCGCTTATTA 60.347 38.462 0.00 0.00 0.00 0.98
778 839 5.560183 GCACGTTCAAATATAGCCGCTTATT 60.560 40.000 0.00 0.41 0.00 1.40
779 840 4.084013 GCACGTTCAAATATAGCCGCTTAT 60.084 41.667 0.00 0.00 0.00 1.73
780 841 3.246699 GCACGTTCAAATATAGCCGCTTA 59.753 43.478 0.00 0.00 0.00 3.09
782 843 1.597663 GCACGTTCAAATATAGCCGCT 59.402 47.619 0.00 0.00 0.00 5.52
852 920 1.401905 CTGAGCTAAAATTGGGTCGCC 59.598 52.381 4.61 0.00 38.76 5.54
928 996 2.338984 GACGGGGCCTGCGTATAG 59.661 66.667 13.63 0.00 0.00 1.31
929 997 3.228759 GGACGGGGCCTGCGTATA 61.229 66.667 13.63 0.00 0.00 1.47
998 1066 4.741239 AGGAGGACCGGGCCATGT 62.741 66.667 32.91 8.08 41.83 3.21
1575 1643 3.414700 GACTGCACGAGGTTGCCG 61.415 66.667 0.00 0.00 42.25 5.69
2055 2123 1.118356 AGATGATGACCTCCGGCTCC 61.118 60.000 0.00 0.00 0.00 4.70
2555 2623 4.530857 GCGAGTGGGGGTCGATGG 62.531 72.222 0.00 0.00 39.92 3.51
2647 2718 1.541310 ATGGTGACCATGACGTCGGT 61.541 55.000 17.79 14.13 43.39 4.69
2709 2783 1.456705 GGAGAGGATGAGGAGGCGT 60.457 63.158 0.00 0.00 0.00 5.68
2802 2876 2.390225 AGATGAGGTAGTAGGCAGGG 57.610 55.000 0.00 0.00 0.00 4.45
2805 2879 3.474600 GACGTAGATGAGGTAGTAGGCA 58.525 50.000 0.00 0.00 0.00 4.75
2917 2991 9.865321 GAATTAATAATAACCATGCATGCATCT 57.135 29.630 30.07 18.88 33.90 2.90
2918 2992 9.642327 TGAATTAATAATAACCATGCATGCATC 57.358 29.630 30.07 14.22 33.90 3.91
2920 2994 9.999660 AATGAATTAATAATAACCATGCATGCA 57.000 25.926 25.04 25.04 0.00 3.96
2997 3075 1.535833 AGATATCTCGGTGCTACGGG 58.464 55.000 0.00 0.00 35.15 5.28
2998 3076 4.966965 ATTAGATATCTCGGTGCTACGG 57.033 45.455 8.95 0.00 0.00 4.02
2999 3077 7.432545 CCATTAATTAGATATCTCGGTGCTACG 59.567 40.741 8.95 0.00 0.00 3.51
3028 3106 9.973450 ATGAATTACTAGTGTGAGCATAAGTAG 57.027 33.333 5.39 0.00 31.18 2.57
3052 3130 8.655651 TTGCCTTAGGAAACTTTAAAAACATG 57.344 30.769 0.69 0.00 43.67 3.21
3083 3161 1.064979 GGCTAGGATGGGTCGGAAAAA 60.065 52.381 0.00 0.00 0.00 1.94
3084 3162 0.544697 GGCTAGGATGGGTCGGAAAA 59.455 55.000 0.00 0.00 0.00 2.29
3085 3163 1.682451 CGGCTAGGATGGGTCGGAAA 61.682 60.000 0.00 0.00 0.00 3.13
3086 3164 2.131709 CGGCTAGGATGGGTCGGAA 61.132 63.158 0.00 0.00 0.00 4.30
3087 3165 2.520982 CGGCTAGGATGGGTCGGA 60.521 66.667 0.00 0.00 0.00 4.55
3088 3166 4.301027 GCGGCTAGGATGGGTCGG 62.301 72.222 0.00 0.00 0.00 4.79
3089 3167 2.771763 GATGCGGCTAGGATGGGTCG 62.772 65.000 0.00 0.00 0.00 4.79
3090 3168 1.004440 GATGCGGCTAGGATGGGTC 60.004 63.158 0.00 0.00 0.00 4.46
3091 3169 2.520536 GGATGCGGCTAGGATGGGT 61.521 63.158 0.00 0.00 0.00 4.51
3092 3170 2.348998 GGATGCGGCTAGGATGGG 59.651 66.667 0.00 0.00 0.00 4.00
3093 3171 2.047844 CGGATGCGGCTAGGATGG 60.048 66.667 0.00 0.00 0.00 3.51
3094 3172 2.740055 GCGGATGCGGCTAGGATG 60.740 66.667 9.20 0.00 0.00 3.51
3104 3182 3.993234 CGTGAGATGCGCGGATGC 61.993 66.667 20.78 10.61 46.26 3.91
3116 3194 1.437986 GGGTCGGGAAGATCGTGAG 59.562 63.158 0.00 0.00 0.00 3.51
3117 3195 2.056223 GGGGTCGGGAAGATCGTGA 61.056 63.158 0.00 0.00 0.00 4.35
3118 3196 2.499685 GGGGTCGGGAAGATCGTG 59.500 66.667 0.00 0.00 0.00 4.35
3119 3197 2.762875 GGGGGTCGGGAAGATCGT 60.763 66.667 0.00 0.00 0.00 3.73
3120 3198 2.762459 TGGGGGTCGGGAAGATCG 60.762 66.667 0.00 0.00 0.00 3.69
3121 3199 2.908796 GTGGGGGTCGGGAAGATC 59.091 66.667 0.00 0.00 0.00 2.75
3122 3200 3.081409 CGTGGGGGTCGGGAAGAT 61.081 66.667 0.00 0.00 0.00 2.40
3123 3201 4.626402 ACGTGGGGGTCGGGAAGA 62.626 66.667 0.00 0.00 0.00 2.87
3124 3202 4.078516 GACGTGGGGGTCGGGAAG 62.079 72.222 0.00 0.00 0.00 3.46
3146 3224 2.035626 CCCCCGTGTTGCCTCAAT 59.964 61.111 0.00 0.00 0.00 2.57
3194 3272 2.764547 GGAGGAGGGAAGGGACGG 60.765 72.222 0.00 0.00 0.00 4.79
3325 3403 2.180017 CATGCCGCCAAGCTTCAC 59.820 61.111 0.00 0.00 0.00 3.18
3340 3418 1.448540 CGGAACTTCGCTGCTCCAT 60.449 57.895 5.82 0.00 0.00 3.41
3436 3514 0.105039 GAATAGGACGGAGCCTGTGG 59.895 60.000 4.25 0.00 39.08 4.17
3438 3516 2.116383 CGAATAGGACGGAGCCTGT 58.884 57.895 4.25 0.00 39.08 4.00
3492 3570 0.461548 CCTGAAGGTAGCAGCGATCA 59.538 55.000 0.00 0.00 32.06 2.92
3494 3572 1.144936 GCCTGAAGGTAGCAGCGAT 59.855 57.895 0.00 0.00 37.57 4.58
3645 3723 4.598894 CCCCTGATCCGCGCTCTG 62.599 72.222 5.56 3.65 0.00 3.35
3646 3724 4.841617 TCCCCTGATCCGCGCTCT 62.842 66.667 5.56 0.00 0.00 4.09
3696 3774 2.517414 ATCCCATGGATGCCGGTG 59.483 61.111 15.22 0.00 41.43 4.94
3707 3785 1.524002 CCTGTCGTGAGCATCCCAT 59.476 57.895 0.00 0.00 0.00 4.00
3712 3790 1.593787 CACTCCCTGTCGTGAGCAT 59.406 57.895 0.00 0.00 33.04 3.79
3765 3843 0.547712 ACCTACACCCTCCATGCTGT 60.548 55.000 0.00 0.00 0.00 4.40
3769 3847 0.253044 CACCACCTACACCCTCCATG 59.747 60.000 0.00 0.00 0.00 3.66
3851 3929 1.460255 CCAAGACCCTTCCTGGCAA 59.540 57.895 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.