Multiple sequence alignment - TraesCS1A01G389300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G389300 chr1A 100.000 4721 0 0 1 4721 557422813 557427533 0.000000e+00 8719.0
1 TraesCS1A01G389300 chr1A 92.208 77 0 1 74 150 557422851 557422921 2.320000e-18 104.0
2 TraesCS1A01G389300 chr1A 92.208 77 0 1 39 109 557422886 557422962 2.320000e-18 104.0
3 TraesCS1A01G389300 chr4B 89.049 2840 158 63 140 2930 111778365 111781100 0.000000e+00 3380.0
4 TraesCS1A01G389300 chr4B 90.541 962 50 13 3020 3950 111781090 111782041 0.000000e+00 1234.0
5 TraesCS1A01G389300 chr4B 94.023 435 19 4 4287 4721 111783149 111783576 0.000000e+00 652.0
6 TraesCS1A01G389300 chr4B 86.574 216 10 9 4081 4294 111782337 111782535 2.210000e-53 220.0
7 TraesCS1A01G389300 chr4B 92.800 125 9 0 3968 4092 111782166 111782290 1.040000e-41 182.0
8 TraesCS1A01G389300 chr1D 92.490 2104 86 17 2639 4721 465100015 465102067 0.000000e+00 2944.0
9 TraesCS1A01G389300 chr1D 91.431 1062 58 13 1491 2526 465098962 465100016 0.000000e+00 1426.0
10 TraesCS1A01G389300 chr1D 84.996 1413 91 60 131 1497 465097450 465098787 0.000000e+00 1323.0
11 TraesCS1A01G389300 chr1B 96.034 706 21 3 3025 3727 642061337 642062038 0.000000e+00 1142.0
12 TraesCS1A01G389300 chr1B 92.541 429 26 3 1851 2277 642060430 642060854 1.120000e-170 610.0
13 TraesCS1A01G389300 chr1B 88.654 379 26 7 3731 4092 642062605 642062983 3.350000e-121 446.0
14 TraesCS1A01G389300 chr1B 89.726 292 11 1 2639 2930 642061070 642061342 5.810000e-94 355.0
15 TraesCS1A01G389300 chr1B 97.549 204 3 2 2324 2526 642060869 642061071 9.720000e-92 348.0
16 TraesCS1A01G389300 chr1B 84.091 176 13 5 4081 4252 642063030 642063194 6.330000e-34 156.0
17 TraesCS1A01G389300 chr3D 80.615 325 59 4 3025 3347 120147317 120146995 1.010000e-61 248.0
18 TraesCS1A01G389300 chr3D 80.597 268 26 14 1247 1503 178651815 178652067 2.900000e-42 183.0
19 TraesCS1A01G389300 chr3A 79.385 325 63 4 3025 3347 127089208 127088886 4.750000e-55 226.0
20 TraesCS1A01G389300 chr3A 81.858 226 24 8 1247 1469 221274979 221275190 1.750000e-39 174.0
21 TraesCS1A01G389300 chr3A 76.538 260 33 18 1255 1503 335471205 335470963 2.980000e-22 117.0
22 TraesCS1A01G389300 chr3A 90.000 50 2 3 1248 1296 17624752 17624705 1.420000e-05 62.1
23 TraesCS1A01G389300 chr7D 84.038 213 31 3 1639 1850 159736608 159736818 8.010000e-48 202.0
24 TraesCS1A01G389300 chr7A 84.038 213 31 3 1639 1850 158395267 158395477 8.010000e-48 202.0
25 TraesCS1A01G389300 chr7B 83.568 213 32 3 1639 1850 120586989 120587199 3.730000e-46 196.0
26 TraesCS1A01G389300 chr4D 80.000 225 26 10 1248 1469 65537974 65537766 1.060000e-31 148.0
27 TraesCS1A01G389300 chr5B 78.723 235 29 15 1246 1469 302063656 302063880 2.290000e-28 137.0
28 TraesCS1A01G389300 chr5B 74.405 336 69 7 3013 3344 507795335 507795657 1.380000e-25 128.0
29 TraesCS1A01G389300 chr5B 79.891 184 27 7 1246 1427 533479442 533479617 4.960000e-25 126.0
30 TraesCS1A01G389300 chr6D 78.603 229 23 14 1292 1509 310399732 310399519 1.380000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G389300 chr1A 557422813 557427533 4720 False 8719.000000 8719 100.0000 1 4721 1 chr1A.!!$F1 4720
1 TraesCS1A01G389300 chr4B 111778365 111783576 5211 False 1133.600000 3380 90.5974 140 4721 5 chr4B.!!$F1 4581
2 TraesCS1A01G389300 chr1D 465097450 465102067 4617 False 1897.666667 2944 89.6390 131 4721 3 chr1D.!!$F1 4590
3 TraesCS1A01G389300 chr1B 642060430 642063194 2764 False 509.500000 1142 91.4325 1851 4252 6 chr1B.!!$F1 2401

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.038983 CACACACACACCCATGCATG 60.039 55.0 20.19 20.19 0.00 4.06 F
1029 1095 0.321671 ACAGTAGTGGCGCTCATGTT 59.678 50.0 7.64 0.00 0.00 2.71 F
1664 1947 0.329596 AGGTTGATCTTGTGGGAGGC 59.670 55.0 0.00 0.00 0.00 4.70 F
2094 2383 0.034960 TTTGGCCGATTCCGATTCCA 60.035 50.0 0.00 0.00 38.22 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1883 0.247460 CGCAGACACTCCATCAGGAA 59.753 55.0 0.00 0.0 45.19 3.36 R
2075 2358 0.034960 TGGAATCGGAATCGGCCAAA 60.035 50.0 2.24 0.0 36.95 3.28 R
2591 2904 0.036388 TCGGGCAAGGTCAGATGAAC 60.036 55.0 0.00 0.0 0.00 3.18 R
3818 4831 0.121197 ACTCCTTCCTCCCATCCCAA 59.879 55.0 0.00 0.0 0.00 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.792500 ACACACACACACACCCATG 58.208 52.632 0.00 0.00 0.00 3.66
19 20 1.359833 CACACACACACACCCATGC 59.640 57.895 0.00 0.00 0.00 4.06
20 21 1.077140 ACACACACACACCCATGCA 60.077 52.632 0.00 0.00 0.00 3.96
21 22 0.467844 ACACACACACACCCATGCAT 60.468 50.000 0.00 0.00 0.00 3.96
22 23 0.038983 CACACACACACCCATGCATG 60.039 55.000 20.19 20.19 0.00 4.06
23 24 1.080366 CACACACACCCATGCATGC 60.080 57.895 21.69 11.82 0.00 4.06
24 25 1.531128 ACACACACCCATGCATGCA 60.531 52.632 25.04 25.04 0.00 3.96
25 26 0.901114 ACACACACCCATGCATGCAT 60.901 50.000 27.46 27.46 37.08 3.96
37 38 4.865776 CATGCATGCATGTGTGATAATCA 58.134 39.130 40.30 13.51 46.20 2.57
38 39 4.985538 TGCATGCATGTGTGATAATCAA 57.014 36.364 26.79 0.00 0.00 2.57
39 40 5.523438 TGCATGCATGTGTGATAATCAAT 57.477 34.783 26.79 0.00 0.00 2.57
40 41 5.285651 TGCATGCATGTGTGATAATCAATG 58.714 37.500 26.79 0.00 0.00 2.82
41 42 4.684242 GCATGCATGTGTGATAATCAATGG 59.316 41.667 26.79 0.00 0.00 3.16
42 43 4.310357 TGCATGTGTGATAATCAATGGC 57.690 40.909 0.00 0.00 0.00 4.40
43 44 3.700038 TGCATGTGTGATAATCAATGGCA 59.300 39.130 0.00 0.00 0.00 4.92
44 45 4.342665 TGCATGTGTGATAATCAATGGCAT 59.657 37.500 0.00 0.00 0.00 4.40
45 46 5.535406 TGCATGTGTGATAATCAATGGCATA 59.465 36.000 0.00 0.00 0.00 3.14
46 47 6.040616 TGCATGTGTGATAATCAATGGCATAA 59.959 34.615 0.00 0.00 0.00 1.90
47 48 6.924612 GCATGTGTGATAATCAATGGCATAAA 59.075 34.615 0.00 0.00 0.00 1.40
48 49 7.601130 GCATGTGTGATAATCAATGGCATAAAT 59.399 33.333 0.00 0.00 0.00 1.40
51 52 9.353431 TGTGTGATAATCAATGGCATAAATAGT 57.647 29.630 0.00 0.00 0.00 2.12
52 53 9.616634 GTGTGATAATCAATGGCATAAATAGTG 57.383 33.333 0.00 0.00 0.00 2.74
53 54 8.298854 TGTGATAATCAATGGCATAAATAGTGC 58.701 33.333 0.00 0.00 41.78 4.40
54 55 8.517878 GTGATAATCAATGGCATAAATAGTGCT 58.482 33.333 0.00 0.00 42.16 4.40
55 56 9.737844 TGATAATCAATGGCATAAATAGTGCTA 57.262 29.630 0.00 0.00 42.16 3.49
56 57 9.994432 GATAATCAATGGCATAAATAGTGCTAC 57.006 33.333 0.00 0.00 42.16 3.58
57 58 9.745018 ATAATCAATGGCATAAATAGTGCTACT 57.255 29.630 0.00 0.00 42.16 2.57
59 60 9.573166 AATCAATGGCATAAATAGTGCTACTAA 57.427 29.630 0.00 0.00 42.16 2.24
60 61 8.607441 TCAATGGCATAAATAGTGCTACTAAG 57.393 34.615 0.00 0.00 42.16 2.18
78 79 8.621532 CTACTAAGCAAAATAAGGATATGGCA 57.378 34.615 0.00 0.00 0.00 4.92
79 80 9.236006 CTACTAAGCAAAATAAGGATATGGCAT 57.764 33.333 4.88 4.88 0.00 4.40
81 82 9.586732 ACTAAGCAAAATAAGGATATGGCATAA 57.413 29.630 11.86 0.00 0.00 1.90
89 90 9.759473 AAATAAGGATATGGCATAAATAGTGCT 57.241 29.630 11.86 2.23 42.16 4.40
91 92 9.838339 ATAAGGATATGGCATAAATAGTGCTAC 57.162 33.333 11.86 0.00 42.16 3.58
92 93 7.502060 AGGATATGGCATAAATAGTGCTACT 57.498 36.000 11.86 0.00 42.16 2.57
93 94 8.609617 AGGATATGGCATAAATAGTGCTACTA 57.390 34.615 11.86 0.00 42.16 1.82
94 95 9.046846 AGGATATGGCATAAATAGTGCTACTAA 57.953 33.333 11.86 0.00 42.16 2.24
95 96 9.319143 GGATATGGCATAAATAGTGCTACTAAG 57.681 37.037 11.86 0.00 42.16 2.18
113 114 8.621532 CTACTAAGCAAAATAAGGATATGGCA 57.378 34.615 0.00 0.00 0.00 4.92
114 115 9.236006 CTACTAAGCAAAATAAGGATATGGCAT 57.764 33.333 4.88 4.88 0.00 4.40
116 117 9.586732 ACTAAGCAAAATAAGGATATGGCATAA 57.413 29.630 11.86 0.00 0.00 1.90
124 125 9.759473 AAATAAGGATATGGCATAAATAGTGCT 57.241 29.630 11.86 2.23 42.16 4.40
126 127 9.838339 ATAAGGATATGGCATAAATAGTGCTAC 57.162 33.333 11.86 0.00 42.16 3.58
127 128 7.502060 AGGATATGGCATAAATAGTGCTACT 57.498 36.000 11.86 0.00 42.16 2.57
128 129 8.609617 AGGATATGGCATAAATAGTGCTACTA 57.390 34.615 11.86 0.00 42.16 1.82
129 130 8.700051 AGGATATGGCATAAATAGTGCTACTAG 58.300 37.037 11.86 0.00 42.16 2.57
130 131 8.478877 GGATATGGCATAAATAGTGCTACTAGT 58.521 37.037 11.86 0.00 42.16 2.57
133 134 7.834881 TGGCATAAATAGTGCTACTAGTACT 57.165 36.000 11.14 11.14 43.57 2.73
134 135 8.929260 TGGCATAAATAGTGCTACTAGTACTA 57.071 34.615 14.31 14.31 45.16 1.82
135 136 9.358406 TGGCATAAATAGTGCTACTAGTACTAA 57.642 33.333 15.52 3.30 44.46 2.24
136 137 9.843334 GGCATAAATAGTGCTACTAGTACTAAG 57.157 37.037 15.52 0.65 44.46 2.18
137 138 9.344309 GCATAAATAGTGCTACTAGTACTAAGC 57.656 37.037 16.50 16.50 44.46 3.09
188 189 3.431725 CAGGCTTTCCCGCGGAAC 61.432 66.667 30.73 10.60 41.87 3.62
195 196 2.032290 GCTTTCCCGCGGAACATAATAC 60.032 50.000 30.73 2.47 41.87 1.89
197 198 0.746063 TCCCGCGGAACATAATACGT 59.254 50.000 30.73 0.00 0.00 3.57
207 208 6.618198 CGGAACATAATACGTACGTAACAAC 58.382 40.000 29.91 16.89 33.99 3.32
223 228 3.896648 ACAACAATAACAGGCTCGTTG 57.103 42.857 11.08 0.00 39.61 4.10
440 454 2.695314 GGCCTGATTAACTGAGCCG 58.305 57.895 0.00 0.00 0.00 5.52
445 469 2.513897 ATTAACTGAGCCGGCCGC 60.514 61.111 26.15 17.04 37.98 6.53
515 542 4.160439 GGAAAAGGAAAATGGTGAGATCCC 59.840 45.833 0.00 0.00 0.00 3.85
544 572 3.840890 AAACAAACAGAAGCACACGAA 57.159 38.095 0.00 0.00 0.00 3.85
553 581 1.266718 GAAGCACACGAATTCCAAGCA 59.733 47.619 0.00 0.00 0.00 3.91
557 585 2.863137 GCACACGAATTCCAAGCAAAAA 59.137 40.909 0.00 0.00 0.00 1.94
564 592 7.083858 CACGAATTCCAAGCAAAAATAGAGAA 58.916 34.615 0.00 0.00 0.00 2.87
565 593 7.272084 CACGAATTCCAAGCAAAAATAGAGAAG 59.728 37.037 0.00 0.00 0.00 2.85
588 620 5.759763 AGATGCAAACAAAAATGGGAAAGAC 59.240 36.000 0.00 0.00 0.00 3.01
606 638 3.454375 AGACCGTGTGTAAAACTGTCTG 58.546 45.455 0.67 0.00 34.05 3.51
607 639 3.118884 AGACCGTGTGTAAAACTGTCTGT 60.119 43.478 0.67 0.00 34.05 3.41
608 640 3.192466 ACCGTGTGTAAAACTGTCTGTC 58.808 45.455 0.00 0.00 0.00 3.51
609 641 3.191669 CCGTGTGTAAAACTGTCTGTCA 58.808 45.455 0.00 0.00 0.00 3.58
673 706 1.452651 GCTAGCTGCTCCCATGCAA 60.453 57.895 4.91 0.00 42.83 4.08
674 707 0.822532 GCTAGCTGCTCCCATGCAAT 60.823 55.000 4.91 0.00 42.83 3.56
675 708 0.952280 CTAGCTGCTCCCATGCAATG 59.048 55.000 4.91 0.00 46.21 2.82
767 800 4.516652 AGTACTACGTGATTAGGAGGGT 57.483 45.455 0.00 0.00 0.00 4.34
811 873 1.097547 GGACATCCCAATGCCACTCG 61.098 60.000 0.00 0.00 36.26 4.18
835 897 5.006649 GCAAGCTTTACCACAAAGAAAAAGG 59.993 40.000 0.00 0.00 0.00 3.11
836 898 5.276461 AGCTTTACCACAAAGAAAAAGGG 57.724 39.130 1.04 0.00 0.00 3.95
837 899 4.714802 AGCTTTACCACAAAGAAAAAGGGT 59.285 37.500 1.04 0.00 0.00 4.34
838 900 5.894964 AGCTTTACCACAAAGAAAAAGGGTA 59.105 36.000 1.04 0.00 0.00 3.69
839 901 5.981315 GCTTTACCACAAAGAAAAAGGGTAC 59.019 40.000 1.04 0.00 31.09 3.34
840 902 6.183360 GCTTTACCACAAAGAAAAAGGGTACT 60.183 38.462 1.04 0.00 31.09 2.73
872 934 6.096705 AGTGAGACTGAGAGATGATAAAGGTG 59.903 42.308 0.00 0.00 0.00 4.00
925 988 0.837272 AGGCGCCCTTTTGAGCTATA 59.163 50.000 26.15 0.00 0.00 1.31
926 989 1.421646 AGGCGCCCTTTTGAGCTATAT 59.578 47.619 26.15 0.00 0.00 0.86
927 990 2.158608 AGGCGCCCTTTTGAGCTATATT 60.159 45.455 26.15 0.00 0.00 1.28
937 1000 6.238211 CCTTTTGAGCTATATTCCACAACTCG 60.238 42.308 0.00 0.00 0.00 4.18
944 1007 1.813513 ATTCCACAACTCGCTCCAAG 58.186 50.000 0.00 0.00 0.00 3.61
950 1013 1.600916 AACTCGCTCCAAGGCCAAC 60.601 57.895 5.01 0.00 0.00 3.77
952 1015 3.551496 CTCGCTCCAAGGCCAACCA 62.551 63.158 5.01 0.00 39.06 3.67
953 1016 3.058160 CGCTCCAAGGCCAACCAG 61.058 66.667 5.01 0.00 39.06 4.00
954 1017 3.376918 GCTCCAAGGCCAACCAGC 61.377 66.667 5.01 2.84 39.06 4.85
962 1025 2.834968 GCCAACCAGCCATAGCCC 60.835 66.667 0.00 0.00 41.25 5.19
963 1026 3.010144 CCAACCAGCCATAGCCCT 58.990 61.111 0.00 0.00 41.25 5.19
964 1027 1.152881 CCAACCAGCCATAGCCCTC 60.153 63.158 0.00 0.00 41.25 4.30
965 1028 1.152881 CAACCAGCCATAGCCCTCC 60.153 63.158 0.00 0.00 41.25 4.30
966 1029 2.386935 AACCAGCCATAGCCCTCCC 61.387 63.158 0.00 0.00 41.25 4.30
967 1030 3.574237 CCAGCCATAGCCCTCCCC 61.574 72.222 0.00 0.00 41.25 4.81
968 1031 2.449322 CAGCCATAGCCCTCCCCT 60.449 66.667 0.00 0.00 41.25 4.79
969 1032 2.449322 AGCCATAGCCCTCCCCTG 60.449 66.667 0.00 0.00 41.25 4.45
970 1033 4.277009 GCCATAGCCCTCCCCTGC 62.277 72.222 0.00 0.00 0.00 4.85
971 1034 2.449322 CCATAGCCCTCCCCTGCT 60.449 66.667 0.00 0.00 41.57 4.24
972 1035 1.152030 CCATAGCCCTCCCCTGCTA 60.152 63.158 0.00 0.00 43.66 3.49
974 1037 1.366319 CATAGCCCTCCCCTGCTATT 58.634 55.000 1.47 0.00 45.97 1.73
975 1038 1.707427 CATAGCCCTCCCCTGCTATTT 59.293 52.381 1.47 0.00 45.97 1.40
976 1039 1.435256 TAGCCCTCCCCTGCTATTTC 58.565 55.000 0.00 0.00 39.00 2.17
977 1040 0.624500 AGCCCTCCCCTGCTATTTCA 60.625 55.000 0.00 0.00 35.69 2.69
978 1041 0.466372 GCCCTCCCCTGCTATTTCAC 60.466 60.000 0.00 0.00 0.00 3.18
979 1042 0.918983 CCCTCCCCTGCTATTTCACA 59.081 55.000 0.00 0.00 0.00 3.58
980 1043 1.408822 CCCTCCCCTGCTATTTCACAC 60.409 57.143 0.00 0.00 0.00 3.82
981 1044 1.281867 CCTCCCCTGCTATTTCACACA 59.718 52.381 0.00 0.00 0.00 3.72
1029 1095 0.321671 ACAGTAGTGGCGCTCATGTT 59.678 50.000 7.64 0.00 0.00 2.71
1051 1117 0.737367 CGCTGCAATCTTCGGTCTCA 60.737 55.000 0.00 0.00 0.00 3.27
1055 1121 1.278985 TGCAATCTTCGGTCTCATGGT 59.721 47.619 0.00 0.00 0.00 3.55
1057 1123 3.126831 GCAATCTTCGGTCTCATGGTAG 58.873 50.000 0.00 0.00 0.00 3.18
1059 1125 4.363999 CAATCTTCGGTCTCATGGTAGTC 58.636 47.826 0.00 0.00 0.00 2.59
1200 1266 1.743252 CAGCTCCGGCCTCTTTGAC 60.743 63.158 0.00 0.00 39.73 3.18
1203 1269 3.665675 CTCCGGCCTCTTTGACGGG 62.666 68.421 5.35 0.00 45.97 5.28
1250 1320 5.952347 TTTTCTTACCTACTCCATCCCTC 57.048 43.478 0.00 0.00 0.00 4.30
1261 1331 3.153919 CTCCATCCCTCCGTTTCAAAAA 58.846 45.455 0.00 0.00 0.00 1.94
1412 1489 4.652822 AGGACTGACTAATTTGGTGTTCC 58.347 43.478 0.00 0.00 0.00 3.62
1421 1500 7.721842 TGACTAATTTGGTGTTCCAGATGTTAA 59.278 33.333 0.00 0.00 45.22 2.01
1422 1501 8.650143 ACTAATTTGGTGTTCCAGATGTTAAT 57.350 30.769 0.00 0.00 45.22 1.40
1423 1502 9.747898 ACTAATTTGGTGTTCCAGATGTTAATA 57.252 29.630 0.00 0.00 45.22 0.98
1517 1785 6.992715 GGAAACGGAGGTACTAGTACATACTA 59.007 42.308 29.38 0.00 41.55 1.82
1518 1786 7.041712 GGAAACGGAGGTACTAGTACATACTAC 60.042 44.444 29.38 18.76 41.55 2.73
1519 1787 6.739331 ACGGAGGTACTAGTACATACTACT 57.261 41.667 29.38 18.09 41.55 2.57
1560 1828 6.543430 AATGCCATTTGTTTATGCTCCTTA 57.457 33.333 0.00 0.00 0.00 2.69
1561 1829 5.991933 TGCCATTTGTTTATGCTCCTTAA 57.008 34.783 0.00 0.00 0.00 1.85
1562 1830 6.543430 TGCCATTTGTTTATGCTCCTTAAT 57.457 33.333 0.00 0.00 0.00 1.40
1563 1831 6.945218 TGCCATTTGTTTATGCTCCTTAATT 58.055 32.000 0.00 0.00 0.00 1.40
1564 1832 7.393216 TGCCATTTGTTTATGCTCCTTAATTT 58.607 30.769 0.00 0.00 0.00 1.82
1585 1857 6.533819 TTTCTATGTGTGTAACGAACTTGG 57.466 37.500 0.00 0.00 42.39 3.61
1589 1861 3.191669 TGTGTGTAACGAACTTGGTGAG 58.808 45.455 0.00 0.00 42.39 3.51
1595 1867 1.045407 ACGAACTTGGTGAGCCACTA 58.955 50.000 0.00 0.00 46.01 2.74
1608 1883 0.890683 GCCACTACTGCCATGCTTTT 59.109 50.000 0.00 0.00 0.00 2.27
1624 1899 3.181440 TGCTTTTTCCTGATGGAGTGTCT 60.181 43.478 0.00 0.00 44.24 3.41
1649 1932 5.239525 GCGCTATCTTTTATCCATTCAGGTT 59.760 40.000 0.00 0.00 39.02 3.50
1664 1947 0.329596 AGGTTGATCTTGTGGGAGGC 59.670 55.000 0.00 0.00 0.00 4.70
1667 1950 2.633488 GTTGATCTTGTGGGAGGCTAC 58.367 52.381 0.00 0.00 0.00 3.58
1916 2199 2.494918 CCCGAGGACATGACGACC 59.505 66.667 0.00 0.00 0.00 4.79
1943 2226 2.813908 GCGTTCCGCGTTGATCCT 60.814 61.111 4.92 0.00 44.55 3.24
2045 2328 1.956629 GCTACGCCAACCTGCTCCTA 61.957 60.000 0.00 0.00 0.00 2.94
2063 2346 5.069251 GCTCCTAGAACATTCTAAGCAGGTA 59.931 44.000 15.71 2.46 40.67 3.08
2064 2347 6.239458 GCTCCTAGAACATTCTAAGCAGGTAT 60.239 42.308 15.71 0.00 40.67 2.73
2065 2348 7.039644 GCTCCTAGAACATTCTAAGCAGGTATA 60.040 40.741 15.71 0.00 40.67 1.47
2094 2383 0.034960 TTTGGCCGATTCCGATTCCA 60.035 50.000 0.00 0.00 38.22 3.53
2131 2425 7.872113 ACTTGAAGAAATCTGACAAGAACTT 57.128 32.000 24.16 9.62 40.35 2.66
2142 2436 7.792374 TCTGACAAGAACTTCATATATTGGC 57.208 36.000 0.00 0.00 0.00 4.52
2342 2655 5.241506 GGTGAGACATTCCTTTCAACAATGA 59.758 40.000 0.00 0.00 32.73 2.57
2343 2656 6.071728 GGTGAGACATTCCTTTCAACAATGAT 60.072 38.462 0.00 0.00 34.96 2.45
2344 2657 6.805271 GTGAGACATTCCTTTCAACAATGATG 59.195 38.462 0.00 0.00 34.96 3.07
2524 2837 3.608662 GCAAGTGCTGGCAGCCAA 61.609 61.111 34.58 16.40 41.51 4.52
2525 2838 2.649034 CAAGTGCTGGCAGCCAAG 59.351 61.111 34.58 18.70 41.51 3.61
2526 2839 2.599578 AAGTGCTGGCAGCCAAGG 60.600 61.111 34.58 5.88 41.51 3.61
2527 2840 3.441712 AAGTGCTGGCAGCCAAGGT 62.442 57.895 34.58 14.01 41.51 3.50
2528 2841 2.034066 GTGCTGGCAGCCAAGGTA 59.966 61.111 34.58 14.01 41.51 3.08
2529 2842 2.034066 TGCTGGCAGCCAAGGTAC 59.966 61.111 34.58 7.28 41.51 3.34
2530 2843 2.034066 GCTGGCAGCCAAGGTACA 59.966 61.111 28.87 0.00 34.48 2.90
2531 2844 2.335712 GCTGGCAGCCAAGGTACAC 61.336 63.158 28.87 0.00 34.48 2.90
2532 2845 1.073025 CTGGCAGCCAAGGTACACA 59.927 57.895 17.03 0.00 30.80 3.72
2533 2846 0.957395 CTGGCAGCCAAGGTACACAG 60.957 60.000 17.03 0.00 30.80 3.66
2534 2847 2.335712 GGCAGCCAAGGTACACAGC 61.336 63.158 6.55 0.00 0.00 4.40
2535 2848 1.600636 GCAGCCAAGGTACACAGCA 60.601 57.895 0.00 0.00 0.00 4.41
2536 2849 1.856265 GCAGCCAAGGTACACAGCAC 61.856 60.000 0.00 0.00 0.00 4.40
2537 2850 1.073199 AGCCAAGGTACACAGCACC 59.927 57.895 0.00 0.00 36.22 5.01
2539 2852 1.237285 GCCAAGGTACACAGCACCTG 61.237 60.000 0.00 0.00 45.90 4.00
2540 2853 1.237285 CCAAGGTACACAGCACCTGC 61.237 60.000 0.00 0.00 45.90 4.85
2550 2863 3.132084 GCACCTGCTTTGGTTGCT 58.868 55.556 0.00 0.00 38.45 3.91
2551 2864 1.442987 GCACCTGCTTTGGTTGCTT 59.557 52.632 0.00 0.00 38.45 3.91
2552 2865 0.673437 GCACCTGCTTTGGTTGCTTA 59.327 50.000 0.00 0.00 38.45 3.09
2553 2866 1.068434 GCACCTGCTTTGGTTGCTTAA 59.932 47.619 0.00 0.00 38.45 1.85
2554 2867 2.742774 CACCTGCTTTGGTTGCTTAAC 58.257 47.619 0.00 0.00 38.45 2.01
2555 2868 2.362077 CACCTGCTTTGGTTGCTTAACT 59.638 45.455 0.00 0.00 38.45 2.24
2556 2869 2.362077 ACCTGCTTTGGTTGCTTAACTG 59.638 45.455 0.00 0.00 36.89 3.16
2557 2870 2.397549 CTGCTTTGGTTGCTTAACTGC 58.602 47.619 0.00 0.00 0.00 4.40
2558 2871 1.753649 TGCTTTGGTTGCTTAACTGCA 59.246 42.857 0.00 0.00 41.65 4.41
2559 2872 2.364970 TGCTTTGGTTGCTTAACTGCAT 59.635 40.909 0.00 0.00 42.96 3.96
2560 2873 2.733026 GCTTTGGTTGCTTAACTGCATG 59.267 45.455 0.00 0.00 42.96 4.06
2561 2874 2.437200 TTGGTTGCTTAACTGCATGC 57.563 45.000 11.82 11.82 42.96 4.06
2562 2875 1.326328 TGGTTGCTTAACTGCATGCA 58.674 45.000 21.29 21.29 42.96 3.96
2563 2876 1.894466 TGGTTGCTTAACTGCATGCAT 59.106 42.857 22.97 10.26 42.96 3.96
2564 2877 2.264813 GGTTGCTTAACTGCATGCATG 58.735 47.619 22.97 22.70 42.96 4.06
2577 2890 3.582444 CATGCATGCTCGAGTTAGTTC 57.418 47.619 20.33 0.00 0.00 3.01
2578 2891 1.629013 TGCATGCTCGAGTTAGTTCG 58.371 50.000 20.33 0.00 41.79 3.95
2579 2892 0.924090 GCATGCTCGAGTTAGTTCGG 59.076 55.000 15.13 0.00 40.83 4.30
2580 2893 0.924090 CATGCTCGAGTTAGTTCGGC 59.076 55.000 15.13 0.00 40.83 5.54
2581 2894 0.530744 ATGCTCGAGTTAGTTCGGCA 59.469 50.000 15.13 3.25 44.53 5.69
2582 2895 0.315886 TGCTCGAGTTAGTTCGGCAA 59.684 50.000 15.13 0.00 40.85 4.52
2583 2896 1.269883 TGCTCGAGTTAGTTCGGCAAA 60.270 47.619 15.13 0.00 40.85 3.68
2584 2897 1.390463 GCTCGAGTTAGTTCGGCAAAG 59.610 52.381 15.13 0.00 40.83 2.77
2585 2898 1.993370 CTCGAGTTAGTTCGGCAAAGG 59.007 52.381 3.62 0.00 40.83 3.11
2586 2899 1.614903 TCGAGTTAGTTCGGCAAAGGA 59.385 47.619 0.00 0.00 40.83 3.36
2587 2900 2.036217 TCGAGTTAGTTCGGCAAAGGAA 59.964 45.455 0.00 0.00 40.83 3.36
2588 2901 2.412089 CGAGTTAGTTCGGCAAAGGAAG 59.588 50.000 0.00 0.00 36.95 3.46
2589 2902 3.400255 GAGTTAGTTCGGCAAAGGAAGT 58.600 45.455 0.00 0.00 0.00 3.01
2590 2903 3.813724 GAGTTAGTTCGGCAAAGGAAGTT 59.186 43.478 0.00 0.00 0.00 2.66
2591 2904 3.564225 AGTTAGTTCGGCAAAGGAAGTTG 59.436 43.478 0.00 0.00 0.00 3.16
2592 2905 2.052782 AGTTCGGCAAAGGAAGTTGT 57.947 45.000 0.00 0.00 0.00 3.32
2593 2906 2.375146 AGTTCGGCAAAGGAAGTTGTT 58.625 42.857 0.00 0.00 0.00 2.83
2594 2907 2.357952 AGTTCGGCAAAGGAAGTTGTTC 59.642 45.455 0.00 0.00 0.00 3.18
2595 2908 2.045561 TCGGCAAAGGAAGTTGTTCA 57.954 45.000 0.00 0.00 33.93 3.18
2596 2909 2.582052 TCGGCAAAGGAAGTTGTTCAT 58.418 42.857 0.00 0.00 33.93 2.57
2597 2910 2.552315 TCGGCAAAGGAAGTTGTTCATC 59.448 45.455 0.00 0.00 33.93 2.92
2598 2911 2.554032 CGGCAAAGGAAGTTGTTCATCT 59.446 45.455 0.00 0.00 33.93 2.90
2599 2912 3.610114 CGGCAAAGGAAGTTGTTCATCTG 60.610 47.826 0.00 0.00 33.93 2.90
2600 2913 3.569701 GGCAAAGGAAGTTGTTCATCTGA 59.430 43.478 0.00 0.00 33.93 3.27
2601 2914 4.540824 GCAAAGGAAGTTGTTCATCTGAC 58.459 43.478 0.00 0.00 33.93 3.51
2602 2915 4.557496 GCAAAGGAAGTTGTTCATCTGACC 60.557 45.833 0.00 0.00 33.93 4.02
2603 2916 4.713792 AAGGAAGTTGTTCATCTGACCT 57.286 40.909 0.00 0.00 33.93 3.85
2604 2917 4.713792 AGGAAGTTGTTCATCTGACCTT 57.286 40.909 0.00 0.00 33.93 3.50
2605 2918 4.392940 AGGAAGTTGTTCATCTGACCTTG 58.607 43.478 0.00 0.00 33.93 3.61
2606 2919 3.057946 GGAAGTTGTTCATCTGACCTTGC 60.058 47.826 0.00 0.00 33.93 4.01
2607 2920 2.508526 AGTTGTTCATCTGACCTTGCC 58.491 47.619 0.00 0.00 0.00 4.52
2608 2921 1.541588 GTTGTTCATCTGACCTTGCCC 59.458 52.381 0.00 0.00 0.00 5.36
2609 2922 0.321564 TGTTCATCTGACCTTGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
2610 2923 0.036388 GTTCATCTGACCTTGCCCGA 60.036 55.000 0.00 0.00 0.00 5.14
2611 2924 0.036388 TTCATCTGACCTTGCCCGAC 60.036 55.000 0.00 0.00 0.00 4.79
2612 2925 0.904865 TCATCTGACCTTGCCCGACT 60.905 55.000 0.00 0.00 0.00 4.18
2613 2926 0.460987 CATCTGACCTTGCCCGACTC 60.461 60.000 0.00 0.00 0.00 3.36
2614 2927 0.904865 ATCTGACCTTGCCCGACTCA 60.905 55.000 0.00 0.00 0.00 3.41
2615 2928 0.904865 TCTGACCTTGCCCGACTCAT 60.905 55.000 0.00 0.00 0.00 2.90
2616 2929 0.742281 CTGACCTTGCCCGACTCATG 60.742 60.000 0.00 0.00 0.00 3.07
2617 2930 1.296715 GACCTTGCCCGACTCATGT 59.703 57.895 0.00 0.00 0.00 3.21
2618 2931 0.535335 GACCTTGCCCGACTCATGTA 59.465 55.000 0.00 0.00 0.00 2.29
2619 2932 0.249398 ACCTTGCCCGACTCATGTAC 59.751 55.000 0.00 0.00 0.00 2.90
2620 2933 0.462047 CCTTGCCCGACTCATGTACC 60.462 60.000 0.00 0.00 0.00 3.34
2621 2934 0.806102 CTTGCCCGACTCATGTACCG 60.806 60.000 0.00 0.00 0.00 4.02
2622 2935 1.537814 TTGCCCGACTCATGTACCGT 61.538 55.000 0.00 0.00 0.00 4.83
2623 2936 1.518572 GCCCGACTCATGTACCGTG 60.519 63.158 0.00 0.00 0.00 4.94
2624 2937 1.940883 GCCCGACTCATGTACCGTGA 61.941 60.000 0.00 0.00 0.00 4.35
2625 2938 0.744874 CCCGACTCATGTACCGTGAT 59.255 55.000 0.00 0.00 0.00 3.06
2626 2939 1.536072 CCCGACTCATGTACCGTGATG 60.536 57.143 0.00 0.00 0.00 3.07
2627 2940 1.404035 CCGACTCATGTACCGTGATGA 59.596 52.381 0.00 0.00 0.00 2.92
2628 2941 2.034685 CCGACTCATGTACCGTGATGAT 59.965 50.000 0.00 0.00 0.00 2.45
2629 2942 3.045688 CGACTCATGTACCGTGATGATG 58.954 50.000 0.00 0.00 0.00 3.07
2630 2943 3.489229 CGACTCATGTACCGTGATGATGT 60.489 47.826 0.00 0.00 0.00 3.06
2631 2944 3.785486 ACTCATGTACCGTGATGATGTG 58.215 45.455 0.00 0.00 0.00 3.21
2632 2945 3.195610 ACTCATGTACCGTGATGATGTGT 59.804 43.478 0.00 0.00 0.00 3.72
2633 2946 4.183865 CTCATGTACCGTGATGATGTGTT 58.816 43.478 0.00 0.00 0.00 3.32
2634 2947 3.932089 TCATGTACCGTGATGATGTGTTG 59.068 43.478 0.00 0.00 0.00 3.33
2635 2948 3.394674 TGTACCGTGATGATGTGTTGT 57.605 42.857 0.00 0.00 0.00 3.32
2636 2949 3.063485 TGTACCGTGATGATGTGTTGTG 58.937 45.455 0.00 0.00 0.00 3.33
2637 2950 0.874390 ACCGTGATGATGTGTTGTGC 59.126 50.000 0.00 0.00 0.00 4.57
2825 3230 3.780173 AGCGCCTCCTTCCTGCTC 61.780 66.667 2.29 0.00 0.00 4.26
2828 3233 2.270527 GCCTCCTTCCTGCTCACC 59.729 66.667 0.00 0.00 0.00 4.02
2924 3329 1.081376 CCTCGCGTTCGTCAAGTCT 60.081 57.895 5.77 0.00 36.96 3.24
2968 3373 3.833650 TCAACATTCCAATTCTGCCATGT 59.166 39.130 0.00 0.00 0.00 3.21
2993 3401 6.150307 TCTGCTGTTTACTTTCAGAAACAACA 59.850 34.615 9.01 9.01 43.11 3.33
3000 3408 8.655970 GTTTACTTTCAGAAACAACAGCATTTT 58.344 29.630 0.00 0.00 35.93 1.82
3001 3409 6.651755 ACTTTCAGAAACAACAGCATTTTG 57.348 33.333 0.00 0.00 0.00 2.44
3014 3422 9.593134 ACAACAGCATTTTGAACTTTTTATACA 57.407 25.926 0.00 0.00 0.00 2.29
3015 3423 9.848172 CAACAGCATTTTGAACTTTTTATACAC 57.152 29.630 0.00 0.00 0.00 2.90
3016 3424 8.280909 ACAGCATTTTGAACTTTTTATACACG 57.719 30.769 0.00 0.00 0.00 4.49
3017 3425 7.381139 ACAGCATTTTGAACTTTTTATACACGG 59.619 33.333 0.00 0.00 0.00 4.94
3018 3426 6.364976 AGCATTTTGAACTTTTTATACACGGC 59.635 34.615 0.00 0.00 0.00 5.68
3019 3427 6.144724 GCATTTTGAACTTTTTATACACGGCA 59.855 34.615 0.00 0.00 0.00 5.69
3020 3428 7.306866 GCATTTTGAACTTTTTATACACGGCAA 60.307 33.333 0.00 0.00 0.00 4.52
3021 3429 8.543774 CATTTTGAACTTTTTATACACGGCAAA 58.456 29.630 0.00 0.00 0.00 3.68
3022 3430 8.649973 TTTTGAACTTTTTATACACGGCAAAT 57.350 26.923 0.00 0.00 0.00 2.32
3023 3431 8.649973 TTTGAACTTTTTATACACGGCAAATT 57.350 26.923 0.00 0.00 0.00 1.82
3042 3450 5.520748 AATTCCAGGTGAACTACATCCTT 57.479 39.130 0.00 0.00 35.31 3.36
3212 3620 3.292159 GGCCGTGAACCCCAACAC 61.292 66.667 0.00 0.00 0.00 3.32
3213 3621 3.292159 GCCGTGAACCCCAACACC 61.292 66.667 0.00 0.00 34.05 4.16
3315 3723 4.308458 ACCTACAACAGCGCGCCA 62.308 61.111 30.33 5.16 0.00 5.69
3465 3873 1.733399 GCAGAACGTGACGAGGACC 60.733 63.158 13.70 0.00 0.00 4.46
3504 3912 0.815734 CCTACCACAGGTACTCGGTG 59.184 60.000 7.36 7.36 40.99 4.94
3727 4138 1.065491 ACAAGCTGGTGTGAGTGAACA 60.065 47.619 0.00 0.00 0.00 3.18
3728 4139 2.016318 CAAGCTGGTGTGAGTGAACAA 58.984 47.619 0.00 0.00 0.00 2.83
3753 4731 3.711704 TCCATGTTTGAGGTCCTAGGATC 59.288 47.826 16.27 15.51 0.00 3.36
3790 4803 1.876263 GTGGGTTTGTTGTGTGCGC 60.876 57.895 0.00 0.00 0.00 6.09
3809 4822 1.589196 GCTAGGCGCGAGTTAGTGG 60.589 63.158 12.10 0.00 0.00 4.00
3812 4825 1.940883 TAGGCGCGAGTTAGTGGTGG 61.941 60.000 12.10 0.00 0.00 4.61
3813 4826 2.813908 GCGCGAGTTAGTGGTGGG 60.814 66.667 12.10 0.00 0.00 4.61
3814 4827 2.654877 CGCGAGTTAGTGGTGGGT 59.345 61.111 0.00 0.00 0.00 4.51
3815 4828 1.445582 CGCGAGTTAGTGGTGGGTC 60.446 63.158 0.00 0.00 0.00 4.46
3816 4829 1.079336 GCGAGTTAGTGGTGGGTCC 60.079 63.158 0.00 0.00 0.00 4.46
3817 4830 1.823169 GCGAGTTAGTGGTGGGTCCA 61.823 60.000 0.00 0.00 45.01 4.02
3878 4914 2.544721 TGTGCTCATCCTCTTCCTTCT 58.455 47.619 0.00 0.00 0.00 2.85
3908 4944 3.414759 TGGTTAGGCCAGAGAGGAATA 57.585 47.619 5.01 0.00 43.61 1.75
3916 4952 4.042684 AGGCCAGAGAGGAATATGGATTTC 59.957 45.833 5.01 0.00 41.22 2.17
3919 4955 5.558818 CCAGAGAGGAATATGGATTTCAGG 58.441 45.833 0.00 0.00 41.22 3.86
3927 4963 6.508202 AGGAATATGGATTTCAGGGAGATGAT 59.492 38.462 0.00 0.00 0.00 2.45
3958 5098 8.641498 ATGTTCATCCTTCTTACATTTGAAGT 57.359 30.769 0.00 0.00 38.30 3.01
4119 5327 6.433093 GCTAAGAAAAAGGTTAGATCCCAACA 59.567 38.462 9.35 0.00 0.00 3.33
4122 5330 7.468141 AGAAAAAGGTTAGATCCCAACAATC 57.532 36.000 9.35 1.92 0.00 2.67
4148 5377 3.057736 GCTGCATTTTCAGAGCTGAGAAA 60.058 43.478 7.43 0.00 41.13 2.52
4149 5378 4.724303 CTGCATTTTCAGAGCTGAGAAAG 58.276 43.478 7.43 4.95 41.13 2.62
4247 5484 7.163001 ACTGAAGAAAAAGAAAAACTGCTCT 57.837 32.000 0.00 0.00 0.00 4.09
4325 6185 6.071278 AGCTACGGTTTTCAGATCTAAGAACT 60.071 38.462 0.00 0.00 0.00 3.01
4326 6186 6.590677 GCTACGGTTTTCAGATCTAAGAACTT 59.409 38.462 0.00 0.00 0.00 2.66
4331 6191 7.385205 CGGTTTTCAGATCTAAGAACTTTGAGA 59.615 37.037 0.00 0.00 0.00 3.27
4416 6276 4.718940 ATTATGGCAAACAAGCTACACC 57.281 40.909 0.00 0.00 34.17 4.16
4420 6280 2.497675 TGGCAAACAAGCTACACCAAAA 59.502 40.909 0.00 0.00 34.17 2.44
4461 6321 5.486526 AGGAATTGCGGCAATCAATTTTTA 58.513 33.333 26.79 0.00 42.30 1.52
4476 6336 9.507280 AATCAATTTTTATTCAGTCATAGTGCG 57.493 29.630 0.00 0.00 0.00 5.34
4510 6370 3.222173 TGACTAACCAACTGCCAATGT 57.778 42.857 0.00 0.00 0.00 2.71
4581 6441 0.249699 TCGACGTTTCATGTGGCACT 60.250 50.000 19.83 1.19 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.383456 GCATGGGTGTGTGTGTGTGT 61.383 55.000 0.00 0.00 0.00 3.72
1 2 1.359833 GCATGGGTGTGTGTGTGTG 59.640 57.895 0.00 0.00 0.00 3.82
2 3 0.467844 ATGCATGGGTGTGTGTGTGT 60.468 50.000 0.00 0.00 0.00 3.72
3 4 0.038983 CATGCATGGGTGTGTGTGTG 60.039 55.000 19.40 0.00 0.00 3.82
5 6 1.080366 GCATGCATGGGTGTGTGTG 60.080 57.895 27.34 0.13 0.00 3.82
6 7 0.901114 ATGCATGCATGGGTGTGTGT 60.901 50.000 31.74 4.69 35.03 3.72
8 9 4.445832 ATGCATGCATGGGTGTGT 57.554 50.000 31.74 6.34 35.03 3.72
16 17 5.523438 TTGATTATCACACATGCATGCAT 57.477 34.783 27.46 27.46 37.08 3.96
17 18 4.985538 TTGATTATCACACATGCATGCA 57.014 36.364 26.53 25.04 0.00 3.96
18 19 4.684242 CCATTGATTATCACACATGCATGC 59.316 41.667 26.53 11.82 0.00 4.06
19 20 4.684242 GCCATTGATTATCACACATGCATG 59.316 41.667 25.09 25.09 0.00 4.06
20 21 4.342665 TGCCATTGATTATCACACATGCAT 59.657 37.500 0.00 0.00 0.00 3.96
21 22 3.700038 TGCCATTGATTATCACACATGCA 59.300 39.130 0.00 0.00 0.00 3.96
22 23 4.310357 TGCCATTGATTATCACACATGC 57.690 40.909 0.00 0.00 0.00 4.06
25 26 9.353431 ACTATTTATGCCATTGATTATCACACA 57.647 29.630 0.00 0.00 0.00 3.72
26 27 9.616634 CACTATTTATGCCATTGATTATCACAC 57.383 33.333 0.00 0.00 0.00 3.82
27 28 8.298854 GCACTATTTATGCCATTGATTATCACA 58.701 33.333 0.00 0.00 37.08 3.58
28 29 8.517878 AGCACTATTTATGCCATTGATTATCAC 58.482 33.333 0.00 0.00 44.53 3.06
29 30 8.640063 AGCACTATTTATGCCATTGATTATCA 57.360 30.769 0.00 0.00 44.53 2.15
30 31 9.994432 GTAGCACTATTTATGCCATTGATTATC 57.006 33.333 0.00 0.00 44.53 1.75
31 32 9.745018 AGTAGCACTATTTATGCCATTGATTAT 57.255 29.630 0.00 0.00 44.53 1.28
33 34 9.573166 TTAGTAGCACTATTTATGCCATTGATT 57.427 29.630 0.00 0.00 44.53 2.57
34 35 9.224267 CTTAGTAGCACTATTTATGCCATTGAT 57.776 33.333 0.00 0.00 44.53 2.57
35 36 7.173218 GCTTAGTAGCACTATTTATGCCATTGA 59.827 37.037 0.00 0.00 46.95 2.57
36 37 7.301054 GCTTAGTAGCACTATTTATGCCATTG 58.699 38.462 0.00 0.00 46.95 2.82
37 38 7.440523 GCTTAGTAGCACTATTTATGCCATT 57.559 36.000 0.00 0.00 46.95 3.16
53 54 8.621532 TGCCATATCCTTATTTTGCTTAGTAG 57.378 34.615 0.00 0.00 0.00 2.57
55 56 9.586732 TTATGCCATATCCTTATTTTGCTTAGT 57.413 29.630 0.00 0.00 0.00 2.24
63 64 9.759473 AGCACTATTTATGCCATATCCTTATTT 57.241 29.630 0.00 0.00 44.53 1.40
65 66 9.838339 GTAGCACTATTTATGCCATATCCTTAT 57.162 33.333 0.00 0.00 44.53 1.73
66 67 9.046846 AGTAGCACTATTTATGCCATATCCTTA 57.953 33.333 0.00 0.00 44.53 2.69
67 68 7.922382 AGTAGCACTATTTATGCCATATCCTT 58.078 34.615 0.00 0.00 44.53 3.36
68 69 7.502060 AGTAGCACTATTTATGCCATATCCT 57.498 36.000 0.00 0.00 44.53 3.24
69 70 9.319143 CTTAGTAGCACTATTTATGCCATATCC 57.681 37.037 0.00 0.00 44.53 2.59
70 71 8.821894 GCTTAGTAGCACTATTTATGCCATATC 58.178 37.037 0.00 0.00 46.95 1.63
71 72 8.723942 GCTTAGTAGCACTATTTATGCCATAT 57.276 34.615 0.00 0.00 46.95 1.78
88 89 8.621532 TGCCATATCCTTATTTTGCTTAGTAG 57.378 34.615 0.00 0.00 0.00 2.57
90 91 9.586732 TTATGCCATATCCTTATTTTGCTTAGT 57.413 29.630 0.00 0.00 0.00 2.24
98 99 9.759473 AGCACTATTTATGCCATATCCTTATTT 57.241 29.630 0.00 0.00 44.53 1.40
100 101 9.838339 GTAGCACTATTTATGCCATATCCTTAT 57.162 33.333 0.00 0.00 44.53 1.73
101 102 9.046846 AGTAGCACTATTTATGCCATATCCTTA 57.953 33.333 0.00 0.00 44.53 2.69
102 103 7.922382 AGTAGCACTATTTATGCCATATCCTT 58.078 34.615 0.00 0.00 44.53 3.36
103 104 7.502060 AGTAGCACTATTTATGCCATATCCT 57.498 36.000 0.00 0.00 44.53 3.24
104 105 8.478877 ACTAGTAGCACTATTTATGCCATATCC 58.521 37.037 0.00 0.00 44.53 2.59
107 108 9.529823 AGTACTAGTAGCACTATTTATGCCATA 57.470 33.333 1.87 0.00 44.53 2.74
108 109 8.423906 AGTACTAGTAGCACTATTTATGCCAT 57.576 34.615 1.87 0.00 44.53 4.40
109 110 7.834881 AGTACTAGTAGCACTATTTATGCCA 57.165 36.000 1.87 0.00 44.53 4.92
110 111 9.843334 CTTAGTACTAGTAGCACTATTTATGCC 57.157 37.037 10.46 0.00 44.53 4.40
111 112 9.344309 GCTTAGTACTAGTAGCACTATTTATGC 57.656 37.037 17.88 7.34 43.74 3.14
119 120 9.804758 CTTATTTTGCTTAGTACTAGTAGCACT 57.195 33.333 22.99 15.23 42.78 4.40
120 121 9.032420 CCTTATTTTGCTTAGTACTAGTAGCAC 57.968 37.037 22.99 2.04 42.78 4.40
121 122 8.974238 TCCTTATTTTGCTTAGTACTAGTAGCA 58.026 33.333 20.48 20.48 41.51 3.49
122 123 9.984190 ATCCTTATTTTGCTTAGTACTAGTAGC 57.016 33.333 16.50 16.50 0.00 3.58
135 136 9.343539 GGTCTTGATTAGTATCCTTATTTTGCT 57.656 33.333 0.00 0.00 0.00 3.91
136 137 9.120538 TGGTCTTGATTAGTATCCTTATTTTGC 57.879 33.333 0.00 0.00 0.00 3.68
195 196 4.386652 AGCCTGTTATTGTTGTTACGTACG 59.613 41.667 15.01 15.01 0.00 3.67
197 198 4.622313 CGAGCCTGTTATTGTTGTTACGTA 59.378 41.667 0.00 0.00 0.00 3.57
207 208 1.737793 GGGTCAACGAGCCTGTTATTG 59.262 52.381 4.98 0.00 45.63 1.90
223 228 3.538591 CCGTTCCTTTATAACCTGGGTC 58.461 50.000 0.00 0.00 0.00 4.46
450 474 3.189010 AAAAAGTTGACGGCGGGCG 62.189 57.895 23.00 23.00 0.00 6.13
451 475 2.725641 AAAAAGTTGACGGCGGGC 59.274 55.556 13.24 3.01 0.00 6.13
536 564 2.132740 TTTGCTTGGAATTCGTGTGC 57.867 45.000 0.00 2.28 0.00 4.57
544 572 7.093640 TGCATCTTCTCTATTTTTGCTTGGAAT 60.094 33.333 0.00 0.00 0.00 3.01
557 585 7.178983 TCCCATTTTTGTTTGCATCTTCTCTAT 59.821 33.333 0.00 0.00 0.00 1.98
564 592 5.759763 GTCTTTCCCATTTTTGTTTGCATCT 59.240 36.000 0.00 0.00 0.00 2.90
565 593 5.049474 GGTCTTTCCCATTTTTGTTTGCATC 60.049 40.000 0.00 0.00 0.00 3.91
588 620 3.191669 TGACAGACAGTTTTACACACGG 58.808 45.455 0.00 0.00 0.00 4.94
739 772 8.580720 CCTCCTAATCACGTAGTACTACTAGTA 58.419 40.741 26.36 15.48 41.61 1.82
740 773 7.441017 CCTCCTAATCACGTAGTACTACTAGT 58.559 42.308 26.36 16.96 41.61 2.57
741 774 6.873076 CCCTCCTAATCACGTAGTACTACTAG 59.127 46.154 26.36 20.00 41.61 2.57
742 775 6.327626 ACCCTCCTAATCACGTAGTACTACTA 59.672 42.308 26.36 14.55 41.61 1.82
743 776 5.131809 ACCCTCCTAATCACGTAGTACTACT 59.868 44.000 26.36 12.85 41.61 2.57
744 777 5.372373 ACCCTCCTAATCACGTAGTACTAC 58.628 45.833 21.06 21.06 41.61 2.73
745 778 5.367937 AGACCCTCCTAATCACGTAGTACTA 59.632 44.000 0.00 0.00 41.61 1.82
746 779 4.165758 AGACCCTCCTAATCACGTAGTACT 59.834 45.833 0.00 0.00 41.61 2.73
747 780 4.459330 AGACCCTCCTAATCACGTAGTAC 58.541 47.826 0.00 0.00 41.61 2.73
750 783 3.552875 TGAGACCCTCCTAATCACGTAG 58.447 50.000 0.00 0.00 0.00 3.51
767 800 4.897509 AAAGATGGTCATGTGACTGAGA 57.102 40.909 12.43 0.00 44.20 3.27
811 873 5.006649 CCTTTTTCTTTGTGGTAAAGCTTGC 59.993 40.000 0.00 0.00 0.00 4.01
835 897 4.248859 TCAGTCTCACTACGTACAGTACC 58.751 47.826 5.07 0.00 0.00 3.34
836 898 5.167121 TCTCAGTCTCACTACGTACAGTAC 58.833 45.833 0.00 0.00 0.00 2.73
837 899 5.184671 TCTCTCAGTCTCACTACGTACAGTA 59.815 44.000 0.00 0.00 0.00 2.74
838 900 4.021280 TCTCTCAGTCTCACTACGTACAGT 60.021 45.833 0.00 0.00 0.00 3.55
839 901 4.496360 TCTCTCAGTCTCACTACGTACAG 58.504 47.826 0.00 0.00 0.00 2.74
840 902 4.532314 TCTCTCAGTCTCACTACGTACA 57.468 45.455 0.00 0.00 0.00 2.90
872 934 4.052518 ACATGCTGCCCCAGGTCC 62.053 66.667 0.00 0.00 31.21 4.46
879 941 4.722700 ACCCACGACATGCTGCCC 62.723 66.667 0.00 0.00 0.00 5.36
925 988 1.611673 CCTTGGAGCGAGTTGTGGAAT 60.612 52.381 0.00 0.00 0.00 3.01
926 989 0.250295 CCTTGGAGCGAGTTGTGGAA 60.250 55.000 0.00 0.00 0.00 3.53
927 990 1.371183 CCTTGGAGCGAGTTGTGGA 59.629 57.895 0.00 0.00 0.00 4.02
937 1000 3.376918 GCTGGTTGGCCTTGGAGC 61.377 66.667 3.32 2.69 35.27 4.70
950 1013 3.574237 GGGGAGGGCTATGGCTGG 61.574 72.222 0.00 0.00 38.73 4.85
952 1015 2.449322 CAGGGGAGGGCTATGGCT 60.449 66.667 0.00 0.00 38.73 4.75
953 1016 4.277009 GCAGGGGAGGGCTATGGC 62.277 72.222 0.00 0.00 37.82 4.40
954 1017 1.152030 TAGCAGGGGAGGGCTATGG 60.152 63.158 0.00 0.00 41.41 2.74
957 1020 1.345009 TGAAATAGCAGGGGAGGGCTA 60.345 52.381 0.00 0.00 45.75 3.93
958 1021 0.624500 TGAAATAGCAGGGGAGGGCT 60.625 55.000 0.00 0.00 43.94 5.19
959 1022 0.466372 GTGAAATAGCAGGGGAGGGC 60.466 60.000 0.00 0.00 0.00 5.19
960 1023 0.918983 TGTGAAATAGCAGGGGAGGG 59.081 55.000 0.00 0.00 0.00 4.30
961 1024 1.281867 TGTGTGAAATAGCAGGGGAGG 59.718 52.381 0.00 0.00 0.00 4.30
962 1025 2.359900 GTGTGTGAAATAGCAGGGGAG 58.640 52.381 0.00 0.00 0.00 4.30
963 1026 1.004277 GGTGTGTGAAATAGCAGGGGA 59.996 52.381 0.00 0.00 0.00 4.81
964 1027 1.004745 AGGTGTGTGAAATAGCAGGGG 59.995 52.381 0.00 0.00 0.00 4.79
965 1028 2.496899 AGGTGTGTGAAATAGCAGGG 57.503 50.000 0.00 0.00 0.00 4.45
966 1029 3.679389 AGAAGGTGTGTGAAATAGCAGG 58.321 45.455 0.00 0.00 0.00 4.85
967 1030 4.083110 CCAAGAAGGTGTGTGAAATAGCAG 60.083 45.833 0.00 0.00 0.00 4.24
968 1031 3.820467 CCAAGAAGGTGTGTGAAATAGCA 59.180 43.478 0.00 0.00 0.00 3.49
969 1032 4.425577 CCAAGAAGGTGTGTGAAATAGC 57.574 45.455 0.00 0.00 0.00 2.97
993 1056 0.403655 TGTTCCTGGCCATTGCACTA 59.596 50.000 5.51 0.00 40.13 2.74
995 1058 1.181098 ACTGTTCCTGGCCATTGCAC 61.181 55.000 5.51 1.55 40.13 4.57
1038 1104 3.066900 CGACTACCATGAGACCGAAGATT 59.933 47.826 0.00 0.00 0.00 2.40
1051 1117 0.810031 GCCATTGACGCGACTACCAT 60.810 55.000 15.93 0.00 0.00 3.55
1073 1139 0.807496 GTCATGTCCAGAAGCAAGGC 59.193 55.000 0.00 0.00 0.00 4.35
1074 1140 2.486472 AGTCATGTCCAGAAGCAAGG 57.514 50.000 0.00 0.00 0.00 3.61
1203 1269 2.435410 CGTACCCCGTTGGCCTTC 60.435 66.667 3.32 0.00 37.83 3.46
1222 1288 9.470399 GGGATGGAGTAGGTAAGAAAAATAAAA 57.530 33.333 0.00 0.00 0.00 1.52
1226 1295 6.126449 GGAGGGATGGAGTAGGTAAGAAAAAT 60.126 42.308 0.00 0.00 0.00 1.82
1232 1301 2.240279 CGGAGGGATGGAGTAGGTAAG 58.760 57.143 0.00 0.00 0.00 2.34
1390 1467 4.104102 TGGAACACCAAATTAGTCAGTCCT 59.896 41.667 0.00 0.00 0.00 3.85
1517 1785 6.183360 GGCATTATGTTTTGATCAGTGCTAGT 60.183 38.462 0.00 0.00 0.00 2.57
1518 1786 6.183360 TGGCATTATGTTTTGATCAGTGCTAG 60.183 38.462 0.00 0.00 0.00 3.42
1519 1787 5.651576 TGGCATTATGTTTTGATCAGTGCTA 59.348 36.000 0.00 0.00 0.00 3.49
1560 1828 7.227910 ACCAAGTTCGTTACACACATAGAAATT 59.772 33.333 0.00 0.00 0.00 1.82
1561 1829 6.708949 ACCAAGTTCGTTACACACATAGAAAT 59.291 34.615 0.00 0.00 0.00 2.17
1562 1830 6.018588 CACCAAGTTCGTTACACACATAGAAA 60.019 38.462 0.00 0.00 0.00 2.52
1563 1831 5.464057 CACCAAGTTCGTTACACACATAGAA 59.536 40.000 0.00 0.00 0.00 2.10
1564 1832 4.986034 CACCAAGTTCGTTACACACATAGA 59.014 41.667 0.00 0.00 0.00 1.98
1595 1867 1.999648 TCAGGAAAAAGCATGGCAGT 58.000 45.000 0.00 0.00 0.00 4.40
1608 1883 0.247460 CGCAGACACTCCATCAGGAA 59.753 55.000 0.00 0.00 45.19 3.36
1624 1899 4.756642 CCTGAATGGATAAAAGATAGCGCA 59.243 41.667 11.47 0.00 38.35 6.09
1649 1932 2.254152 AGTAGCCTCCCACAAGATCA 57.746 50.000 0.00 0.00 0.00 2.92
1664 1947 1.028330 TGTCCCCTGCGTCGTAGTAG 61.028 60.000 9.55 0.43 0.00 2.57
1667 1950 1.445582 GTTGTCCCCTGCGTCGTAG 60.446 63.158 3.01 3.01 0.00 3.51
2074 2357 1.099689 GGAATCGGAATCGGCCAAAA 58.900 50.000 2.24 0.00 36.95 2.44
2075 2358 0.034960 TGGAATCGGAATCGGCCAAA 60.035 50.000 2.24 0.00 36.95 3.28
2076 2359 0.746563 GTGGAATCGGAATCGGCCAA 60.747 55.000 2.24 0.00 35.54 4.52
2077 2360 1.153249 GTGGAATCGGAATCGGCCA 60.153 57.895 2.24 0.00 36.95 5.36
2078 2361 1.153249 TGTGGAATCGGAATCGGCC 60.153 57.895 0.00 0.00 36.95 6.13
2079 2362 1.776034 GCTGTGGAATCGGAATCGGC 61.776 60.000 0.00 0.00 36.95 5.54
2080 2363 1.160329 GGCTGTGGAATCGGAATCGG 61.160 60.000 0.00 0.00 36.95 4.18
2081 2364 0.179073 AGGCTGTGGAATCGGAATCG 60.179 55.000 0.00 0.00 37.82 3.34
2082 2365 1.134401 TCAGGCTGTGGAATCGGAATC 60.134 52.381 15.27 0.00 0.00 2.52
2083 2366 0.911769 TCAGGCTGTGGAATCGGAAT 59.088 50.000 15.27 0.00 0.00 3.01
2084 2367 0.036388 GTCAGGCTGTGGAATCGGAA 60.036 55.000 15.27 0.00 0.00 4.30
2085 2368 0.904865 AGTCAGGCTGTGGAATCGGA 60.905 55.000 15.27 0.00 0.00 4.55
2094 2383 2.435805 TCTTCAAGTTCAGTCAGGCTGT 59.564 45.455 15.27 0.00 45.23 4.40
2342 2655 2.033911 TGCACCGCACCATCACAT 59.966 55.556 0.00 0.00 31.71 3.21
2343 2656 2.669229 CTGCACCGCACCATCACA 60.669 61.111 0.00 0.00 33.79 3.58
2344 2657 3.434319 CCTGCACCGCACCATCAC 61.434 66.667 0.00 0.00 33.79 3.06
2533 2846 0.673437 TAAGCAACCAAAGCAGGTGC 59.327 50.000 0.00 0.00 42.25 5.01
2534 2847 2.362077 AGTTAAGCAACCAAAGCAGGTG 59.638 45.455 0.00 0.00 42.25 4.00
2535 2848 2.362077 CAGTTAAGCAACCAAAGCAGGT 59.638 45.455 0.00 0.00 45.91 4.00
2536 2849 2.863704 GCAGTTAAGCAACCAAAGCAGG 60.864 50.000 0.00 0.00 35.05 4.85
2537 2850 2.223782 TGCAGTTAAGCAACCAAAGCAG 60.224 45.455 0.00 0.00 42.46 4.24
2538 2851 1.753649 TGCAGTTAAGCAACCAAAGCA 59.246 42.857 0.00 0.00 42.46 3.91
2539 2852 2.507339 TGCAGTTAAGCAACCAAAGC 57.493 45.000 0.00 0.00 42.46 3.51
2557 2870 2.034254 CGAACTAACTCGAGCATGCATG 60.034 50.000 22.70 22.70 41.44 4.06
2558 2871 2.196749 CGAACTAACTCGAGCATGCAT 58.803 47.619 21.98 4.75 41.44 3.96
2559 2872 1.629013 CGAACTAACTCGAGCATGCA 58.371 50.000 21.98 0.00 41.44 3.96
2560 2873 0.924090 CCGAACTAACTCGAGCATGC 59.076 55.000 13.61 10.51 41.44 4.06
2561 2874 0.924090 GCCGAACTAACTCGAGCATG 59.076 55.000 13.61 4.94 41.44 4.06
2562 2875 0.530744 TGCCGAACTAACTCGAGCAT 59.469 50.000 13.61 4.25 41.44 3.79
2563 2876 0.315886 TTGCCGAACTAACTCGAGCA 59.684 50.000 13.61 0.00 41.44 4.26
2564 2877 1.390463 CTTTGCCGAACTAACTCGAGC 59.610 52.381 13.61 0.00 41.44 5.03
2565 2878 1.993370 CCTTTGCCGAACTAACTCGAG 59.007 52.381 11.84 11.84 41.44 4.04
2566 2879 1.614903 TCCTTTGCCGAACTAACTCGA 59.385 47.619 0.00 0.00 41.44 4.04
2567 2880 2.074547 TCCTTTGCCGAACTAACTCG 57.925 50.000 0.00 0.00 38.58 4.18
2568 2881 3.400255 ACTTCCTTTGCCGAACTAACTC 58.600 45.455 0.00 0.00 0.00 3.01
2569 2882 3.487120 ACTTCCTTTGCCGAACTAACT 57.513 42.857 0.00 0.00 0.00 2.24
2570 2883 3.314357 ACAACTTCCTTTGCCGAACTAAC 59.686 43.478 0.00 0.00 0.00 2.34
2571 2884 3.547746 ACAACTTCCTTTGCCGAACTAA 58.452 40.909 0.00 0.00 0.00 2.24
2572 2885 3.202829 ACAACTTCCTTTGCCGAACTA 57.797 42.857 0.00 0.00 0.00 2.24
2573 2886 2.052782 ACAACTTCCTTTGCCGAACT 57.947 45.000 0.00 0.00 0.00 3.01
2574 2887 2.098443 TGAACAACTTCCTTTGCCGAAC 59.902 45.455 0.00 0.00 0.00 3.95
2575 2888 2.370349 TGAACAACTTCCTTTGCCGAA 58.630 42.857 0.00 0.00 0.00 4.30
2576 2889 2.045561 TGAACAACTTCCTTTGCCGA 57.954 45.000 0.00 0.00 0.00 5.54
2577 2890 2.554032 AGATGAACAACTTCCTTTGCCG 59.446 45.455 0.00 0.00 0.00 5.69
2578 2891 3.569701 TCAGATGAACAACTTCCTTTGCC 59.430 43.478 0.00 0.00 0.00 4.52
2579 2892 4.540824 GTCAGATGAACAACTTCCTTTGC 58.459 43.478 0.00 0.00 0.00 3.68
2580 2893 4.823989 AGGTCAGATGAACAACTTCCTTTG 59.176 41.667 0.00 0.00 33.22 2.77
2581 2894 5.053978 AGGTCAGATGAACAACTTCCTTT 57.946 39.130 0.00 0.00 33.22 3.11
2582 2895 4.713792 AGGTCAGATGAACAACTTCCTT 57.286 40.909 0.00 0.00 33.22 3.36
2583 2896 4.392940 CAAGGTCAGATGAACAACTTCCT 58.607 43.478 0.00 0.00 33.22 3.36
2584 2897 3.057946 GCAAGGTCAGATGAACAACTTCC 60.058 47.826 0.00 0.00 33.22 3.46
2585 2898 3.057946 GGCAAGGTCAGATGAACAACTTC 60.058 47.826 0.00 0.00 33.22 3.01
2586 2899 2.887152 GGCAAGGTCAGATGAACAACTT 59.113 45.455 0.00 0.00 33.22 2.66
2587 2900 2.508526 GGCAAGGTCAGATGAACAACT 58.491 47.619 0.00 0.00 33.22 3.16
2588 2901 1.541588 GGGCAAGGTCAGATGAACAAC 59.458 52.381 0.00 0.00 33.22 3.32
2589 2902 1.881925 CGGGCAAGGTCAGATGAACAA 60.882 52.381 0.00 0.00 33.22 2.83
2590 2903 0.321564 CGGGCAAGGTCAGATGAACA 60.322 55.000 0.00 0.00 33.22 3.18
2591 2904 0.036388 TCGGGCAAGGTCAGATGAAC 60.036 55.000 0.00 0.00 0.00 3.18
2592 2905 0.036388 GTCGGGCAAGGTCAGATGAA 60.036 55.000 0.00 0.00 0.00 2.57
2593 2906 0.904865 AGTCGGGCAAGGTCAGATGA 60.905 55.000 0.00 0.00 0.00 2.92
2594 2907 0.460987 GAGTCGGGCAAGGTCAGATG 60.461 60.000 0.00 0.00 0.00 2.90
2595 2908 0.904865 TGAGTCGGGCAAGGTCAGAT 60.905 55.000 0.00 0.00 0.00 2.90
2596 2909 0.904865 ATGAGTCGGGCAAGGTCAGA 60.905 55.000 0.00 0.00 0.00 3.27
2597 2910 0.742281 CATGAGTCGGGCAAGGTCAG 60.742 60.000 0.00 0.00 0.00 3.51
2598 2911 1.296392 CATGAGTCGGGCAAGGTCA 59.704 57.895 0.00 0.00 0.00 4.02
2599 2912 0.535335 TACATGAGTCGGGCAAGGTC 59.465 55.000 0.00 0.00 0.00 3.85
2600 2913 0.249398 GTACATGAGTCGGGCAAGGT 59.751 55.000 0.00 0.00 0.00 3.50
2601 2914 0.462047 GGTACATGAGTCGGGCAAGG 60.462 60.000 0.00 0.00 0.00 3.61
2602 2915 0.806102 CGGTACATGAGTCGGGCAAG 60.806 60.000 0.00 0.00 0.00 4.01
2603 2916 1.216977 CGGTACATGAGTCGGGCAA 59.783 57.895 0.00 0.00 0.00 4.52
2604 2917 1.980232 ACGGTACATGAGTCGGGCA 60.980 57.895 0.00 0.00 0.00 5.36
2605 2918 1.518572 CACGGTACATGAGTCGGGC 60.519 63.158 0.00 0.00 0.00 6.13
2606 2919 0.744874 ATCACGGTACATGAGTCGGG 59.255 55.000 0.00 0.64 30.37 5.14
2607 2920 1.404035 TCATCACGGTACATGAGTCGG 59.596 52.381 0.00 0.00 30.37 4.79
2608 2921 2.844122 TCATCACGGTACATGAGTCG 57.156 50.000 0.00 2.11 30.37 4.18
2609 2922 3.798878 CACATCATCACGGTACATGAGTC 59.201 47.826 0.00 0.00 30.37 3.36
2610 2923 3.195610 ACACATCATCACGGTACATGAGT 59.804 43.478 0.00 0.00 30.37 3.41
2611 2924 3.785486 ACACATCATCACGGTACATGAG 58.215 45.455 0.00 0.00 30.37 2.90
2612 2925 3.885724 ACACATCATCACGGTACATGA 57.114 42.857 0.00 1.89 32.53 3.07
2613 2926 3.684305 ACAACACATCATCACGGTACATG 59.316 43.478 0.00 0.00 0.00 3.21
2614 2927 3.684305 CACAACACATCATCACGGTACAT 59.316 43.478 0.00 0.00 0.00 2.29
2615 2928 3.063485 CACAACACATCATCACGGTACA 58.937 45.455 0.00 0.00 0.00 2.90
2616 2929 2.159707 GCACAACACATCATCACGGTAC 60.160 50.000 0.00 0.00 0.00 3.34
2617 2930 2.073056 GCACAACACATCATCACGGTA 58.927 47.619 0.00 0.00 0.00 4.02
2618 2931 0.874390 GCACAACACATCATCACGGT 59.126 50.000 0.00 0.00 0.00 4.83
2619 2932 0.873721 TGCACAACACATCATCACGG 59.126 50.000 0.00 0.00 0.00 4.94
2620 2933 1.532437 ACTGCACAACACATCATCACG 59.468 47.619 0.00 0.00 0.00 4.35
2621 2934 3.558505 GAACTGCACAACACATCATCAC 58.441 45.455 0.00 0.00 0.00 3.06
2622 2935 2.553602 GGAACTGCACAACACATCATCA 59.446 45.455 0.00 0.00 0.00 3.07
2623 2936 2.816087 AGGAACTGCACAACACATCATC 59.184 45.455 0.00 0.00 37.18 2.92
2624 2937 2.867624 AGGAACTGCACAACACATCAT 58.132 42.857 0.00 0.00 37.18 2.45
2625 2938 2.346766 AGGAACTGCACAACACATCA 57.653 45.000 0.00 0.00 37.18 3.07
2825 3230 1.512734 GTAGTCGGCGTACACGGTG 60.513 63.158 6.85 6.58 40.23 4.94
2828 3233 2.941013 GCGTAGTCGGCGTACACG 60.941 66.667 19.62 19.62 38.85 4.49
2891 3296 2.510664 GAGGATCTCGAAGGGCTGT 58.489 57.895 0.00 0.00 0.00 4.40
2924 3329 2.950309 GGCTGTCGAGATTACTACCTGA 59.050 50.000 0.00 0.00 0.00 3.86
2968 3373 6.150307 TGTTGTTTCTGAAAGTAAACAGCAGA 59.850 34.615 16.08 0.00 43.02 4.26
2993 3401 6.364976 GCCGTGTATAAAAAGTTCAAAATGCT 59.635 34.615 0.00 0.00 0.00 3.79
3000 3408 6.864165 GGAATTTGCCGTGTATAAAAAGTTCA 59.136 34.615 0.00 0.00 0.00 3.18
3001 3409 6.864165 TGGAATTTGCCGTGTATAAAAAGTTC 59.136 34.615 0.00 0.00 0.00 3.01
3013 3421 0.958091 TTCACCTGGAATTTGCCGTG 59.042 50.000 0.00 0.54 0.00 4.94
3014 3422 0.958822 GTTCACCTGGAATTTGCCGT 59.041 50.000 0.00 0.00 37.93 5.68
3015 3423 1.247567 AGTTCACCTGGAATTTGCCG 58.752 50.000 0.00 0.00 37.93 5.69
3016 3424 3.153919 TGTAGTTCACCTGGAATTTGCC 58.846 45.455 0.00 0.00 37.93 4.52
3017 3425 4.142381 GGATGTAGTTCACCTGGAATTTGC 60.142 45.833 0.00 0.00 37.93 3.68
3018 3426 5.256474 AGGATGTAGTTCACCTGGAATTTG 58.744 41.667 0.00 0.00 37.93 2.32
3019 3427 5.520748 AGGATGTAGTTCACCTGGAATTT 57.479 39.130 0.00 0.00 37.93 1.82
3020 3428 5.256474 CAAGGATGTAGTTCACCTGGAATT 58.744 41.667 0.00 0.00 37.93 2.17
3021 3429 4.324563 CCAAGGATGTAGTTCACCTGGAAT 60.325 45.833 0.00 0.00 37.93 3.01
3022 3430 3.009033 CCAAGGATGTAGTTCACCTGGAA 59.991 47.826 0.00 0.00 31.48 3.53
3023 3431 2.571653 CCAAGGATGTAGTTCACCTGGA 59.428 50.000 0.00 0.00 31.48 3.86
3150 3558 1.447489 CTCCTGGCAGCTCACGAAG 60.447 63.158 9.56 0.00 0.00 3.79
3607 4018 2.033602 CCACCTCCGGGGAACAAC 59.966 66.667 0.37 0.00 38.76 3.32
3608 4019 3.961414 GCCACCTCCGGGGAACAA 61.961 66.667 0.37 0.00 38.76 2.83
3609 4020 4.974438 AGCCACCTCCGGGGAACA 62.974 66.667 0.37 0.00 38.76 3.18
3727 4138 3.884037 AGGACCTCAAACATGGAAGTT 57.116 42.857 0.00 0.00 0.00 2.66
3728 4139 3.264450 CCTAGGACCTCAAACATGGAAGT 59.736 47.826 1.05 0.00 0.00 3.01
3753 4731 3.304659 CCACCAAAAACTCTGGATTGTCG 60.305 47.826 0.00 0.00 37.40 4.35
3816 4829 1.144503 CTCCTTCCTCCCATCCCAATG 59.855 57.143 0.00 0.00 0.00 2.82
3817 4830 1.275238 ACTCCTTCCTCCCATCCCAAT 60.275 52.381 0.00 0.00 0.00 3.16
3818 4831 0.121197 ACTCCTTCCTCCCATCCCAA 59.879 55.000 0.00 0.00 0.00 4.12
3819 4832 0.621571 CACTCCTTCCTCCCATCCCA 60.622 60.000 0.00 0.00 0.00 4.37
3820 4833 0.326618 TCACTCCTTCCTCCCATCCC 60.327 60.000 0.00 0.00 0.00 3.85
3821 4834 1.488393 CTTCACTCCTTCCTCCCATCC 59.512 57.143 0.00 0.00 0.00 3.51
3822 4835 2.433970 CTCTTCACTCCTTCCTCCCATC 59.566 54.545 0.00 0.00 0.00 3.51
3823 4836 2.045047 TCTCTTCACTCCTTCCTCCCAT 59.955 50.000 0.00 0.00 0.00 4.00
3824 4837 1.433199 TCTCTTCACTCCTTCCTCCCA 59.567 52.381 0.00 0.00 0.00 4.37
3825 4838 2.239681 TCTCTTCACTCCTTCCTCCC 57.760 55.000 0.00 0.00 0.00 4.30
3826 4839 5.941555 TTAATCTCTTCACTCCTTCCTCC 57.058 43.478 0.00 0.00 0.00 4.30
3827 4840 8.672815 CATTTTTAATCTCTTCACTCCTTCCTC 58.327 37.037 0.00 0.00 0.00 3.71
3828 4841 8.166726 ACATTTTTAATCTCTTCACTCCTTCCT 58.833 33.333 0.00 0.00 0.00 3.36
3878 4914 0.321298 GGCCTAACCAAACGCTCTCA 60.321 55.000 0.00 0.00 38.86 3.27
3908 4944 6.715350 ACATATCATCTCCCTGAAATCCAT 57.285 37.500 0.00 0.00 0.00 3.41
3916 4952 7.551974 GGATGAACATTACATATCATCTCCCTG 59.448 40.741 12.68 0.00 44.74 4.45
3919 4955 9.160496 GAAGGATGAACATTACATATCATCTCC 57.840 37.037 12.68 1.51 44.74 3.71
3982 5132 7.742019 GCTTTTATTAACTTAAAGCTGAGGC 57.258 36.000 17.14 0.00 46.27 4.70
4119 5327 3.128938 GCTCTGAAAATGCAGCTCAGATT 59.871 43.478 19.71 0.00 43.43 2.40
4122 5330 2.085320 AGCTCTGAAAATGCAGCTCAG 58.915 47.619 13.64 13.64 37.72 3.35
4150 5379 3.368236 GTCGTGCCTTGTTAGCTTCTTAG 59.632 47.826 0.00 0.00 0.00 2.18
4151 5380 3.323243 GTCGTGCCTTGTTAGCTTCTTA 58.677 45.455 0.00 0.00 0.00 2.10
4152 5381 2.143925 GTCGTGCCTTGTTAGCTTCTT 58.856 47.619 0.00 0.00 0.00 2.52
4153 5382 1.608283 GGTCGTGCCTTGTTAGCTTCT 60.608 52.381 0.00 0.00 0.00 2.85
4154 5383 0.796927 GGTCGTGCCTTGTTAGCTTC 59.203 55.000 0.00 0.00 0.00 3.86
4155 5384 0.107831 TGGTCGTGCCTTGTTAGCTT 59.892 50.000 0.00 0.00 38.35 3.74
4156 5385 0.324943 ATGGTCGTGCCTTGTTAGCT 59.675 50.000 0.00 0.00 38.35 3.32
4157 5386 1.165270 AATGGTCGTGCCTTGTTAGC 58.835 50.000 1.06 0.00 38.35 3.09
4158 5387 2.811431 TCAAATGGTCGTGCCTTGTTAG 59.189 45.455 1.06 0.00 38.35 2.34
4159 5388 2.811431 CTCAAATGGTCGTGCCTTGTTA 59.189 45.455 1.06 0.00 38.35 2.41
4160 5389 1.608590 CTCAAATGGTCGTGCCTTGTT 59.391 47.619 1.06 0.00 38.35 2.83
4161 5390 1.238439 CTCAAATGGTCGTGCCTTGT 58.762 50.000 1.06 0.00 38.35 3.16
4162 5391 0.109597 GCTCAAATGGTCGTGCCTTG 60.110 55.000 1.06 0.00 38.35 3.61
4163 5392 0.250901 AGCTCAAATGGTCGTGCCTT 60.251 50.000 0.00 0.00 38.35 4.35
4164 5393 0.957395 CAGCTCAAATGGTCGTGCCT 60.957 55.000 0.00 0.00 38.35 4.75
4247 5484 3.386726 AGTCAGTGTTGTAGGTTGTAGCA 59.613 43.478 0.00 0.00 0.00 3.49
4325 6185 6.765036 GGACTAATCTGATCATGCTTCTCAAA 59.235 38.462 0.00 0.00 0.00 2.69
4326 6186 6.126968 TGGACTAATCTGATCATGCTTCTCAA 60.127 38.462 0.00 0.00 0.00 3.02
4331 6191 4.141551 TGCTGGACTAATCTGATCATGCTT 60.142 41.667 0.00 0.00 0.00 3.91
4436 6296 2.652941 TTGATTGCCGCAATTCCTTC 57.347 45.000 19.43 8.23 33.90 3.46
4445 6305 5.576384 TGACTGAATAAAAATTGATTGCCGC 59.424 36.000 0.00 0.00 0.00 6.53
4446 6306 7.760131 ATGACTGAATAAAAATTGATTGCCG 57.240 32.000 0.00 0.00 0.00 5.69
4461 6321 3.133003 AGTTAGCCGCACTATGACTGAAT 59.867 43.478 0.00 0.00 0.00 2.57
4476 6336 4.402793 TGGTTAGTCATCTCTCAGTTAGCC 59.597 45.833 0.00 0.00 0.00 3.93
4510 6370 3.560025 CCTGCTGCTCCCTCTTTTTCTAA 60.560 47.826 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.