Multiple sequence alignment - TraesCS1A01G388300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G388300 chr1A 100.000 3242 0 0 1 3242 556830602 556833843 0.000000e+00 5987.0
1 TraesCS1A01G388300 chr1A 98.721 2893 35 2 351 3242 553062197 553065088 0.000000e+00 5136.0
2 TraesCS1A01G388300 chr1A 98.653 2895 30 5 351 3242 555947312 555944424 0.000000e+00 5121.0
3 TraesCS1A01G388300 chr1A 98.584 2896 37 4 351 3242 556823140 556820245 0.000000e+00 5118.0
4 TraesCS1A01G388300 chr1A 94.053 2371 123 7 873 3242 8022946 8025299 0.000000e+00 3581.0
5 TraesCS1A01G388300 chr7A 99.032 2893 24 3 351 3242 589768005 589765116 0.000000e+00 5184.0
6 TraesCS1A01G388300 chr3D 98.100 2895 49 4 350 3242 104031943 104034833 0.000000e+00 5036.0
7 TraesCS1A01G388300 chr2A 92.574 2922 149 33 350 3242 3770339 3767457 0.000000e+00 4132.0
8 TraesCS1A01G388300 chr2A 98.575 2105 29 1 1139 3242 766840021 766842125 0.000000e+00 3720.0
9 TraesCS1A01G388300 chr4A 94.599 2370 111 6 873 3242 16990183 16992535 0.000000e+00 3651.0
10 TraesCS1A01G388300 chr4A 92.416 356 23 2 1 354 538724567 538724214 3.730000e-139 505.0
11 TraesCS1A01G388300 chr6B 82.678 1068 107 34 349 1379 479296659 479297685 0.000000e+00 876.0
12 TraesCS1A01G388300 chr6B 94.248 226 11 2 131 354 153308974 153308749 8.610000e-91 344.0
13 TraesCS1A01G388300 chr6B 95.556 45 2 0 93 137 153310152 153310196 4.490000e-09 73.1
14 TraesCS1A01G388300 chr6B 100.000 29 0 0 96 124 153310137 153310109 2.000000e-03 54.7
15 TraesCS1A01G388300 chr7D 94.774 421 21 1 351 770 546635013 546634593 0.000000e+00 654.0
16 TraesCS1A01G388300 chr5D 84.903 616 71 14 873 1470 443247577 443248188 1.290000e-168 603.0
17 TraesCS1A01G388300 chr5D 77.528 534 62 31 349 849 373943092 373942584 5.330000e-68 268.0
18 TraesCS1A01G388300 chr1D 85.320 579 70 6 882 1447 442783607 442783031 4.660000e-163 584.0
19 TraesCS1A01G388300 chr1D 93.820 356 20 1 1 354 464405055 464405410 4.760000e-148 534.0
20 TraesCS1A01G388300 chr5A 94.944 356 16 1 1 354 412229764 412229409 1.020000e-154 556.0
21 TraesCS1A01G388300 chr4D 94.382 356 16 3 1 354 57853681 57854034 7.910000e-151 544.0
22 TraesCS1A01G388300 chr1B 80.382 785 89 32 351 1098 373112336 373111580 1.320000e-148 536.0
23 TraesCS1A01G388300 chr1B 79.129 896 95 46 348 1175 684285956 684286827 4.760000e-148 534.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G388300 chr1A 556830602 556833843 3241 False 5987 5987 100.000 1 3242 1 chr1A.!!$F3 3241
1 TraesCS1A01G388300 chr1A 553062197 553065088 2891 False 5136 5136 98.721 351 3242 1 chr1A.!!$F2 2891
2 TraesCS1A01G388300 chr1A 555944424 555947312 2888 True 5121 5121 98.653 351 3242 1 chr1A.!!$R1 2891
3 TraesCS1A01G388300 chr1A 556820245 556823140 2895 True 5118 5118 98.584 351 3242 1 chr1A.!!$R2 2891
4 TraesCS1A01G388300 chr1A 8022946 8025299 2353 False 3581 3581 94.053 873 3242 1 chr1A.!!$F1 2369
5 TraesCS1A01G388300 chr7A 589765116 589768005 2889 True 5184 5184 99.032 351 3242 1 chr7A.!!$R1 2891
6 TraesCS1A01G388300 chr3D 104031943 104034833 2890 False 5036 5036 98.100 350 3242 1 chr3D.!!$F1 2892
7 TraesCS1A01G388300 chr2A 3767457 3770339 2882 True 4132 4132 92.574 350 3242 1 chr2A.!!$R1 2892
8 TraesCS1A01G388300 chr2A 766840021 766842125 2104 False 3720 3720 98.575 1139 3242 1 chr2A.!!$F1 2103
9 TraesCS1A01G388300 chr4A 16990183 16992535 2352 False 3651 3651 94.599 873 3242 1 chr4A.!!$F1 2369
10 TraesCS1A01G388300 chr6B 479296659 479297685 1026 False 876 876 82.678 349 1379 1 chr6B.!!$F2 1030
11 TraesCS1A01G388300 chr5D 443247577 443248188 611 False 603 603 84.903 873 1470 1 chr5D.!!$F1 597
12 TraesCS1A01G388300 chr5D 373942584 373943092 508 True 268 268 77.528 349 849 1 chr5D.!!$R1 500
13 TraesCS1A01G388300 chr1D 442783031 442783607 576 True 584 584 85.320 882 1447 1 chr1D.!!$R1 565
14 TraesCS1A01G388300 chr1B 373111580 373112336 756 True 536 536 80.382 351 1098 1 chr1B.!!$R1 747
15 TraesCS1A01G388300 chr1B 684285956 684286827 871 False 534 534 79.129 348 1175 1 chr1B.!!$F1 827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.104934 ACAGTGACCACTCTCCCCTT 60.105 55.0 0.0 0.0 40.2 3.95 F
283 284 0.396060 GGAGGCAGCTATGAAGAGGG 59.604 60.0 0.0 0.0 0.0 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1314 1444 5.553162 AGCCTTATCATCCAGATTATCCCAA 59.447 40.0 0.0 0.0 38.19 4.12 R
2241 2373 6.493166 TCCTTTCATGTTGGAACCATTATCT 58.507 36.0 0.0 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.933206 GGATGCCCATTTCCCTCTT 57.067 52.632 0.00 0.00 0.00 2.85
20 21 2.587522 GGATGCCCATTTCCCTCTTAC 58.412 52.381 0.00 0.00 0.00 2.34
21 22 2.587522 GATGCCCATTTCCCTCTTACC 58.412 52.381 0.00 0.00 0.00 2.85
22 23 1.377690 TGCCCATTTCCCTCTTACCA 58.622 50.000 0.00 0.00 0.00 3.25
23 24 1.005450 TGCCCATTTCCCTCTTACCAC 59.995 52.381 0.00 0.00 0.00 4.16
24 25 1.685180 GCCCATTTCCCTCTTACCACC 60.685 57.143 0.00 0.00 0.00 4.61
25 26 1.063942 CCCATTTCCCTCTTACCACCC 60.064 57.143 0.00 0.00 0.00 4.61
26 27 1.923148 CCATTTCCCTCTTACCACCCT 59.077 52.381 0.00 0.00 0.00 4.34
27 28 3.120108 CCATTTCCCTCTTACCACCCTA 58.880 50.000 0.00 0.00 0.00 3.53
28 29 3.722101 CCATTTCCCTCTTACCACCCTAT 59.278 47.826 0.00 0.00 0.00 2.57
29 30 4.446311 CCATTTCCCTCTTACCACCCTATG 60.446 50.000 0.00 0.00 0.00 2.23
30 31 3.502051 TTCCCTCTTACCACCCTATGT 57.498 47.619 0.00 0.00 0.00 2.29
31 32 3.502051 TCCCTCTTACCACCCTATGTT 57.498 47.619 0.00 0.00 0.00 2.71
32 33 3.381335 TCCCTCTTACCACCCTATGTTC 58.619 50.000 0.00 0.00 0.00 3.18
33 34 3.013648 TCCCTCTTACCACCCTATGTTCT 59.986 47.826 0.00 0.00 0.00 3.01
34 35 3.780850 CCCTCTTACCACCCTATGTTCTT 59.219 47.826 0.00 0.00 0.00 2.52
35 36 4.227527 CCCTCTTACCACCCTATGTTCTTT 59.772 45.833 0.00 0.00 0.00 2.52
36 37 5.427481 CCCTCTTACCACCCTATGTTCTTTA 59.573 44.000 0.00 0.00 0.00 1.85
37 38 6.346896 CCTCTTACCACCCTATGTTCTTTAC 58.653 44.000 0.00 0.00 0.00 2.01
38 39 6.303903 TCTTACCACCCTATGTTCTTTACC 57.696 41.667 0.00 0.00 0.00 2.85
39 40 6.027482 TCTTACCACCCTATGTTCTTTACCT 58.973 40.000 0.00 0.00 0.00 3.08
40 41 7.191210 TCTTACCACCCTATGTTCTTTACCTA 58.809 38.462 0.00 0.00 0.00 3.08
41 42 5.952347 ACCACCCTATGTTCTTTACCTAG 57.048 43.478 0.00 0.00 0.00 3.02
42 43 5.596763 ACCACCCTATGTTCTTTACCTAGA 58.403 41.667 0.00 0.00 29.31 2.43
43 44 5.661759 ACCACCCTATGTTCTTTACCTAGAG 59.338 44.000 0.00 0.00 29.31 2.43
44 45 5.661759 CCACCCTATGTTCTTTACCTAGAGT 59.338 44.000 0.00 0.00 29.31 3.24
45 46 6.837568 CCACCCTATGTTCTTTACCTAGAGTA 59.162 42.308 0.00 0.00 29.31 2.59
46 47 7.014422 CCACCCTATGTTCTTTACCTAGAGTAG 59.986 44.444 0.00 0.00 29.31 2.57
47 48 7.778853 CACCCTATGTTCTTTACCTAGAGTAGA 59.221 40.741 0.00 0.00 29.31 2.59
48 49 7.779326 ACCCTATGTTCTTTACCTAGAGTAGAC 59.221 40.741 0.00 0.00 29.31 2.59
49 50 7.778853 CCCTATGTTCTTTACCTAGAGTAGACA 59.221 40.741 0.00 0.00 29.31 3.41
50 51 8.842280 CCTATGTTCTTTACCTAGAGTAGACAG 58.158 40.741 0.00 0.00 29.31 3.51
51 52 9.398538 CTATGTTCTTTACCTAGAGTAGACAGT 57.601 37.037 0.00 0.00 29.31 3.55
52 53 7.450124 TGTTCTTTACCTAGAGTAGACAGTG 57.550 40.000 0.00 0.00 30.92 3.66
53 54 7.229308 TGTTCTTTACCTAGAGTAGACAGTGA 58.771 38.462 0.00 0.00 30.92 3.41
54 55 7.174599 TGTTCTTTACCTAGAGTAGACAGTGAC 59.825 40.741 0.00 0.00 30.92 3.67
55 56 6.179040 TCTTTACCTAGAGTAGACAGTGACC 58.821 44.000 0.00 0.00 30.92 4.02
56 57 5.509832 TTACCTAGAGTAGACAGTGACCA 57.490 43.478 0.00 0.00 30.92 4.02
57 58 3.688235 ACCTAGAGTAGACAGTGACCAC 58.312 50.000 0.00 0.00 0.00 4.16
58 59 3.331294 ACCTAGAGTAGACAGTGACCACT 59.669 47.826 0.00 0.00 43.61 4.00
59 60 3.942748 CCTAGAGTAGACAGTGACCACTC 59.057 52.174 11.86 11.86 40.20 3.51
60 61 3.799432 AGAGTAGACAGTGACCACTCT 57.201 47.619 15.47 15.47 40.20 3.24
61 62 3.681593 AGAGTAGACAGTGACCACTCTC 58.318 50.000 15.47 4.08 41.56 3.20
62 63 2.750712 GAGTAGACAGTGACCACTCTCC 59.249 54.545 12.36 0.00 40.20 3.71
63 64 1.819903 GTAGACAGTGACCACTCTCCC 59.180 57.143 0.00 0.00 40.20 4.30
64 65 0.543174 AGACAGTGACCACTCTCCCC 60.543 60.000 0.00 0.00 40.20 4.81
65 66 0.543174 GACAGTGACCACTCTCCCCT 60.543 60.000 0.00 0.00 40.20 4.79
66 67 0.104934 ACAGTGACCACTCTCCCCTT 60.105 55.000 0.00 0.00 40.20 3.95
67 68 0.610687 CAGTGACCACTCTCCCCTTC 59.389 60.000 0.00 0.00 40.20 3.46
68 69 0.489567 AGTGACCACTCTCCCCTTCT 59.510 55.000 0.00 0.00 36.92 2.85
69 70 1.132689 AGTGACCACTCTCCCCTTCTT 60.133 52.381 0.00 0.00 36.92 2.52
70 71 1.700186 GTGACCACTCTCCCCTTCTTT 59.300 52.381 0.00 0.00 0.00 2.52
71 72 2.106684 GTGACCACTCTCCCCTTCTTTT 59.893 50.000 0.00 0.00 0.00 2.27
72 73 2.106511 TGACCACTCTCCCCTTCTTTTG 59.893 50.000 0.00 0.00 0.00 2.44
73 74 1.425448 ACCACTCTCCCCTTCTTTTGG 59.575 52.381 0.00 0.00 0.00 3.28
74 75 1.705186 CCACTCTCCCCTTCTTTTGGA 59.295 52.381 0.00 0.00 0.00 3.53
75 76 2.310052 CCACTCTCCCCTTCTTTTGGAT 59.690 50.000 0.00 0.00 0.00 3.41
76 77 3.523564 CCACTCTCCCCTTCTTTTGGATA 59.476 47.826 0.00 0.00 0.00 2.59
77 78 4.518249 CACTCTCCCCTTCTTTTGGATAC 58.482 47.826 0.00 0.00 0.00 2.24
78 79 3.523972 ACTCTCCCCTTCTTTTGGATACC 59.476 47.826 0.00 0.00 0.00 2.73
79 80 2.504175 TCTCCCCTTCTTTTGGATACCG 59.496 50.000 0.00 0.00 0.00 4.02
80 81 1.562475 TCCCCTTCTTTTGGATACCGG 59.438 52.381 0.00 0.00 0.00 5.28
81 82 1.562475 CCCCTTCTTTTGGATACCGGA 59.438 52.381 9.46 0.00 0.00 5.14
82 83 2.421529 CCCCTTCTTTTGGATACCGGAG 60.422 54.545 9.46 0.00 0.00 4.63
83 84 2.504175 CCCTTCTTTTGGATACCGGAGA 59.496 50.000 9.46 0.00 0.00 3.71
84 85 3.054655 CCCTTCTTTTGGATACCGGAGAA 60.055 47.826 9.46 2.72 0.00 2.87
85 86 4.566907 CCCTTCTTTTGGATACCGGAGAAA 60.567 45.833 9.46 0.00 0.00 2.52
86 87 5.007682 CCTTCTTTTGGATACCGGAGAAAA 58.992 41.667 9.46 4.68 0.00 2.29
87 88 5.106277 CCTTCTTTTGGATACCGGAGAAAAC 60.106 44.000 9.46 0.00 0.00 2.43
88 89 4.975631 TCTTTTGGATACCGGAGAAAACA 58.024 39.130 9.46 0.00 0.00 2.83
89 90 5.378332 TCTTTTGGATACCGGAGAAAACAA 58.622 37.500 9.46 2.49 0.00 2.83
90 91 5.239963 TCTTTTGGATACCGGAGAAAACAAC 59.760 40.000 9.46 0.00 0.00 3.32
91 92 3.773418 TGGATACCGGAGAAAACAACA 57.227 42.857 9.46 0.00 0.00 3.33
92 93 3.404899 TGGATACCGGAGAAAACAACAC 58.595 45.455 9.46 0.00 0.00 3.32
93 94 3.071892 TGGATACCGGAGAAAACAACACT 59.928 43.478 9.46 0.00 0.00 3.55
94 95 3.683340 GGATACCGGAGAAAACAACACTC 59.317 47.826 9.46 0.00 0.00 3.51
95 96 1.963172 ACCGGAGAAAACAACACTCC 58.037 50.000 9.46 0.00 44.50 3.85
96 97 1.489230 ACCGGAGAAAACAACACTCCT 59.511 47.619 9.46 0.00 45.40 3.69
97 98 2.701951 ACCGGAGAAAACAACACTCCTA 59.298 45.455 9.46 0.00 45.40 2.94
98 99 3.064931 CCGGAGAAAACAACACTCCTAC 58.935 50.000 0.00 0.00 45.40 3.18
99 100 3.244112 CCGGAGAAAACAACACTCCTACT 60.244 47.826 0.00 0.00 45.40 2.57
100 101 4.377897 CGGAGAAAACAACACTCCTACTT 58.622 43.478 0.00 0.00 45.40 2.24
101 102 4.448060 CGGAGAAAACAACACTCCTACTTC 59.552 45.833 0.00 0.00 45.40 3.01
102 103 5.612351 GGAGAAAACAACACTCCTACTTCT 58.388 41.667 0.00 0.00 44.54 2.85
103 104 6.516194 CGGAGAAAACAACACTCCTACTTCTA 60.516 42.308 0.00 0.00 45.40 2.10
104 105 6.869388 GGAGAAAACAACACTCCTACTTCTAG 59.131 42.308 0.00 0.00 44.54 2.43
105 106 7.255871 GGAGAAAACAACACTCCTACTTCTAGA 60.256 40.741 0.00 0.00 44.54 2.43
106 107 8.196378 AGAAAACAACACTCCTACTTCTAGAT 57.804 34.615 0.00 0.00 0.00 1.98
107 108 8.652290 AGAAAACAACACTCCTACTTCTAGATT 58.348 33.333 0.00 0.00 0.00 2.40
108 109 8.608844 AAAACAACACTCCTACTTCTAGATTG 57.391 34.615 0.00 0.00 0.00 2.67
109 110 6.919775 ACAACACTCCTACTTCTAGATTGT 57.080 37.500 0.00 0.00 0.00 2.71
110 111 7.304497 ACAACACTCCTACTTCTAGATTGTT 57.696 36.000 0.00 0.00 0.00 2.83
111 112 7.736893 ACAACACTCCTACTTCTAGATTGTTT 58.263 34.615 0.00 0.00 0.00 2.83
112 113 8.867097 ACAACACTCCTACTTCTAGATTGTTTA 58.133 33.333 0.00 0.00 0.00 2.01
113 114 9.360093 CAACACTCCTACTTCTAGATTGTTTAG 57.640 37.037 0.00 0.00 0.00 1.85
114 115 8.880991 ACACTCCTACTTCTAGATTGTTTAGA 57.119 34.615 0.00 0.00 0.00 2.10
115 116 9.482175 ACACTCCTACTTCTAGATTGTTTAGAT 57.518 33.333 0.00 0.00 0.00 1.98
140 141 9.719355 ATTTGAAAAATTATGGTTTAGTCACCC 57.281 29.630 0.00 0.00 35.73 4.61
141 142 8.485578 TTGAAAAATTATGGTTTAGTCACCCT 57.514 30.769 0.00 0.00 35.73 4.34
142 143 7.891561 TGAAAAATTATGGTTTAGTCACCCTG 58.108 34.615 0.00 0.00 35.73 4.45
143 144 7.726291 TGAAAAATTATGGTTTAGTCACCCTGA 59.274 33.333 0.00 0.00 35.73 3.86
144 145 7.703058 AAAATTATGGTTTAGTCACCCTGAG 57.297 36.000 0.00 0.00 35.73 3.35
145 146 6.388619 AATTATGGTTTAGTCACCCTGAGT 57.611 37.500 0.00 0.00 35.73 3.41
146 147 5.836024 TTATGGTTTAGTCACCCTGAGTT 57.164 39.130 0.00 0.00 35.73 3.01
147 148 4.724279 ATGGTTTAGTCACCCTGAGTTT 57.276 40.909 0.00 0.00 35.73 2.66
148 149 5.836024 ATGGTTTAGTCACCCTGAGTTTA 57.164 39.130 0.00 0.00 35.73 2.01
149 150 5.836024 TGGTTTAGTCACCCTGAGTTTAT 57.164 39.130 0.00 0.00 35.73 1.40
150 151 6.195600 TGGTTTAGTCACCCTGAGTTTATT 57.804 37.500 0.00 0.00 35.73 1.40
151 152 7.319052 TGGTTTAGTCACCCTGAGTTTATTA 57.681 36.000 0.00 0.00 35.73 0.98
152 153 7.163441 TGGTTTAGTCACCCTGAGTTTATTAC 58.837 38.462 0.00 0.00 35.73 1.89
153 154 7.016858 TGGTTTAGTCACCCTGAGTTTATTACT 59.983 37.037 0.00 0.00 36.41 2.24
169 170 9.686683 AGTTTATTACTCTGGTGCATAAAATCT 57.313 29.630 0.00 0.00 30.62 2.40
170 171 9.722056 GTTTATTACTCTGGTGCATAAAATCTG 57.278 33.333 0.00 0.00 30.62 2.90
171 172 6.949352 ATTACTCTGGTGCATAAAATCTGG 57.051 37.500 0.00 0.00 0.00 3.86
172 173 4.574674 ACTCTGGTGCATAAAATCTGGA 57.425 40.909 0.00 0.00 0.00 3.86
173 174 4.922206 ACTCTGGTGCATAAAATCTGGAA 58.078 39.130 0.00 0.00 0.00 3.53
174 175 5.513233 ACTCTGGTGCATAAAATCTGGAAT 58.487 37.500 0.00 0.00 0.00 3.01
175 176 6.662755 ACTCTGGTGCATAAAATCTGGAATA 58.337 36.000 0.00 0.00 0.00 1.75
176 177 6.543831 ACTCTGGTGCATAAAATCTGGAATAC 59.456 38.462 0.00 0.00 0.00 1.89
177 178 5.827797 TCTGGTGCATAAAATCTGGAATACC 59.172 40.000 0.00 0.00 0.00 2.73
178 179 4.892934 TGGTGCATAAAATCTGGAATACCC 59.107 41.667 0.00 0.00 34.81 3.69
179 180 4.280929 GGTGCATAAAATCTGGAATACCCC 59.719 45.833 0.00 0.00 34.81 4.95
180 181 4.280929 GTGCATAAAATCTGGAATACCCCC 59.719 45.833 0.00 0.00 34.81 5.40
181 182 4.169856 TGCATAAAATCTGGAATACCCCCT 59.830 41.667 0.00 0.00 34.81 4.79
182 183 4.767409 GCATAAAATCTGGAATACCCCCTC 59.233 45.833 0.00 0.00 34.81 4.30
183 184 5.458215 GCATAAAATCTGGAATACCCCCTCT 60.458 44.000 0.00 0.00 34.81 3.69
184 185 4.797912 AAAATCTGGAATACCCCCTCTC 57.202 45.455 0.00 0.00 34.81 3.20
185 186 2.424684 ATCTGGAATACCCCCTCTCC 57.575 55.000 0.00 0.00 34.81 3.71
186 187 1.330155 TCTGGAATACCCCCTCTCCT 58.670 55.000 0.00 0.00 34.81 3.69
187 188 1.657162 TCTGGAATACCCCCTCTCCTT 59.343 52.381 0.00 0.00 34.81 3.36
188 189 2.047296 TCTGGAATACCCCCTCTCCTTT 59.953 50.000 0.00 0.00 34.81 3.11
189 190 2.853077 CTGGAATACCCCCTCTCCTTTT 59.147 50.000 0.00 0.00 34.81 2.27
190 191 2.580783 TGGAATACCCCCTCTCCTTTTG 59.419 50.000 0.00 0.00 34.81 2.44
191 192 2.850568 GGAATACCCCCTCTCCTTTTGA 59.149 50.000 0.00 0.00 0.00 2.69
192 193 3.463704 GGAATACCCCCTCTCCTTTTGAT 59.536 47.826 0.00 0.00 0.00 2.57
193 194 4.079154 GGAATACCCCCTCTCCTTTTGATT 60.079 45.833 0.00 0.00 0.00 2.57
194 195 4.797912 ATACCCCCTCTCCTTTTGATTC 57.202 45.455 0.00 0.00 0.00 2.52
195 196 2.648838 ACCCCCTCTCCTTTTGATTCT 58.351 47.619 0.00 0.00 0.00 2.40
196 197 2.310052 ACCCCCTCTCCTTTTGATTCTG 59.690 50.000 0.00 0.00 0.00 3.02
197 198 2.373224 CCCCTCTCCTTTTGATTCTGC 58.627 52.381 0.00 0.00 0.00 4.26
198 199 2.025510 CCCCTCTCCTTTTGATTCTGCT 60.026 50.000 0.00 0.00 0.00 4.24
199 200 3.200825 CCCCTCTCCTTTTGATTCTGCTA 59.799 47.826 0.00 0.00 0.00 3.49
200 201 4.141298 CCCCTCTCCTTTTGATTCTGCTAT 60.141 45.833 0.00 0.00 0.00 2.97
201 202 5.444176 CCCTCTCCTTTTGATTCTGCTATT 58.556 41.667 0.00 0.00 0.00 1.73
202 203 5.298777 CCCTCTCCTTTTGATTCTGCTATTG 59.701 44.000 0.00 0.00 0.00 1.90
203 204 6.118170 CCTCTCCTTTTGATTCTGCTATTGA 58.882 40.000 0.00 0.00 0.00 2.57
204 205 6.038050 CCTCTCCTTTTGATTCTGCTATTGAC 59.962 42.308 0.00 0.00 0.00 3.18
205 206 6.475504 TCTCCTTTTGATTCTGCTATTGACA 58.524 36.000 0.00 0.00 0.00 3.58
206 207 6.942005 TCTCCTTTTGATTCTGCTATTGACAA 59.058 34.615 0.00 0.00 0.00 3.18
207 208 7.448161 TCTCCTTTTGATTCTGCTATTGACAAA 59.552 33.333 0.00 0.00 0.00 2.83
208 209 8.125978 TCCTTTTGATTCTGCTATTGACAAAT 57.874 30.769 0.00 0.00 0.00 2.32
209 210 8.030692 TCCTTTTGATTCTGCTATTGACAAATG 58.969 33.333 0.00 0.00 0.00 2.32
210 211 7.277098 CCTTTTGATTCTGCTATTGACAAATGG 59.723 37.037 0.00 0.00 36.00 3.16
226 227 9.606631 TTGACAAATGGCAATTTAAAACTAAGT 57.393 25.926 0.00 0.00 38.31 2.24
227 228 9.606631 TGACAAATGGCAATTTAAAACTAAGTT 57.393 25.926 0.00 0.00 34.14 2.66
228 229 9.862585 GACAAATGGCAATTTAAAACTAAGTTG 57.137 29.630 0.00 0.00 34.14 3.16
229 230 9.389755 ACAAATGGCAATTTAAAACTAAGTTGT 57.610 25.926 0.00 0.00 34.14 3.32
230 231 9.862585 CAAATGGCAATTTAAAACTAAGTTGTC 57.137 29.630 0.00 0.00 34.14 3.18
231 232 8.601845 AATGGCAATTTAAAACTAAGTTGTCC 57.398 30.769 0.00 0.00 32.55 4.02
232 233 7.113658 TGGCAATTTAAAACTAAGTTGTCCA 57.886 32.000 0.00 1.40 32.55 4.02
233 234 7.731054 TGGCAATTTAAAACTAAGTTGTCCAT 58.269 30.769 0.00 0.00 32.55 3.41
234 235 8.861086 TGGCAATTTAAAACTAAGTTGTCCATA 58.139 29.630 0.00 0.00 32.55 2.74
235 236 9.135843 GGCAATTTAAAACTAAGTTGTCCATAC 57.864 33.333 0.00 0.00 31.79 2.39
236 237 9.685828 GCAATTTAAAACTAAGTTGTCCATACA 57.314 29.630 0.00 0.00 31.79 2.29
242 243 7.891498 AAACTAAGTTGTCCATACAAAAGGT 57.109 32.000 0.00 0.00 46.84 3.50
243 244 6.877611 ACTAAGTTGTCCATACAAAAGGTG 57.122 37.500 0.00 0.00 46.84 4.00
244 245 6.597562 ACTAAGTTGTCCATACAAAAGGTGA 58.402 36.000 0.00 0.00 46.84 4.02
245 246 6.710744 ACTAAGTTGTCCATACAAAAGGTGAG 59.289 38.462 0.00 0.00 46.84 3.51
246 247 5.304686 AGTTGTCCATACAAAAGGTGAGA 57.695 39.130 0.00 0.00 46.84 3.27
247 248 5.308825 AGTTGTCCATACAAAAGGTGAGAG 58.691 41.667 0.00 0.00 46.84 3.20
248 249 4.286297 TGTCCATACAAAAGGTGAGAGG 57.714 45.455 0.00 0.00 30.91 3.69
249 250 3.009033 TGTCCATACAAAAGGTGAGAGGG 59.991 47.826 0.00 0.00 30.91 4.30
250 251 3.009143 GTCCATACAAAAGGTGAGAGGGT 59.991 47.826 0.00 0.00 0.00 4.34
251 252 3.009033 TCCATACAAAAGGTGAGAGGGTG 59.991 47.826 0.00 0.00 0.00 4.61
252 253 3.347216 CATACAAAAGGTGAGAGGGTGG 58.653 50.000 0.00 0.00 0.00 4.61
253 254 1.518367 ACAAAAGGTGAGAGGGTGGA 58.482 50.000 0.00 0.00 0.00 4.02
254 255 1.421646 ACAAAAGGTGAGAGGGTGGAG 59.578 52.381 0.00 0.00 0.00 3.86
255 256 1.421646 CAAAAGGTGAGAGGGTGGAGT 59.578 52.381 0.00 0.00 0.00 3.85
256 257 2.637872 CAAAAGGTGAGAGGGTGGAGTA 59.362 50.000 0.00 0.00 0.00 2.59
257 258 2.950990 AAGGTGAGAGGGTGGAGTAT 57.049 50.000 0.00 0.00 0.00 2.12
258 259 4.348020 AAAGGTGAGAGGGTGGAGTATA 57.652 45.455 0.00 0.00 0.00 1.47
259 260 4.348020 AAGGTGAGAGGGTGGAGTATAA 57.652 45.455 0.00 0.00 0.00 0.98
260 261 4.348020 AGGTGAGAGGGTGGAGTATAAA 57.652 45.455 0.00 0.00 0.00 1.40
261 262 4.897051 AGGTGAGAGGGTGGAGTATAAAT 58.103 43.478 0.00 0.00 0.00 1.40
262 263 6.039415 AGGTGAGAGGGTGGAGTATAAATA 57.961 41.667 0.00 0.00 0.00 1.40
263 264 6.635021 AGGTGAGAGGGTGGAGTATAAATAT 58.365 40.000 0.00 0.00 0.00 1.28
264 265 6.498651 AGGTGAGAGGGTGGAGTATAAATATG 59.501 42.308 0.00 0.00 0.00 1.78
265 266 6.295916 GGTGAGAGGGTGGAGTATAAATATGG 60.296 46.154 0.00 0.00 0.00 2.74
266 267 6.497259 GTGAGAGGGTGGAGTATAAATATGGA 59.503 42.308 0.00 0.00 0.00 3.41
267 268 6.726299 TGAGAGGGTGGAGTATAAATATGGAG 59.274 42.308 0.00 0.00 0.00 3.86
268 269 6.026186 AGAGGGTGGAGTATAAATATGGAGG 58.974 44.000 0.00 0.00 0.00 4.30
269 270 4.536489 AGGGTGGAGTATAAATATGGAGGC 59.464 45.833 0.00 0.00 0.00 4.70
270 271 4.288626 GGGTGGAGTATAAATATGGAGGCA 59.711 45.833 0.00 0.00 0.00 4.75
271 272 5.491982 GGTGGAGTATAAATATGGAGGCAG 58.508 45.833 0.00 0.00 0.00 4.85
272 273 4.938226 GTGGAGTATAAATATGGAGGCAGC 59.062 45.833 0.00 0.00 0.00 5.25
273 274 4.846367 TGGAGTATAAATATGGAGGCAGCT 59.154 41.667 0.00 0.00 0.00 4.24
274 275 6.022958 TGGAGTATAAATATGGAGGCAGCTA 58.977 40.000 0.00 0.00 0.00 3.32
275 276 6.673978 TGGAGTATAAATATGGAGGCAGCTAT 59.326 38.462 0.00 0.00 0.00 2.97
276 277 6.989169 GGAGTATAAATATGGAGGCAGCTATG 59.011 42.308 0.00 0.00 0.00 2.23
277 278 7.147655 GGAGTATAAATATGGAGGCAGCTATGA 60.148 40.741 0.00 0.00 0.00 2.15
278 279 8.150827 AGTATAAATATGGAGGCAGCTATGAA 57.849 34.615 0.00 0.00 0.00 2.57
279 280 8.263640 AGTATAAATATGGAGGCAGCTATGAAG 58.736 37.037 0.00 0.00 0.00 3.02
280 281 5.573380 AAATATGGAGGCAGCTATGAAGA 57.427 39.130 0.00 0.00 0.00 2.87
281 282 4.822685 ATATGGAGGCAGCTATGAAGAG 57.177 45.455 0.00 0.00 0.00 2.85
282 283 1.126488 TGGAGGCAGCTATGAAGAGG 58.874 55.000 0.00 0.00 0.00 3.69
283 284 0.396060 GGAGGCAGCTATGAAGAGGG 59.604 60.000 0.00 0.00 0.00 4.30
284 285 1.418334 GAGGCAGCTATGAAGAGGGA 58.582 55.000 0.00 0.00 0.00 4.20
285 286 1.344114 GAGGCAGCTATGAAGAGGGAG 59.656 57.143 0.00 0.00 0.00 4.30
286 287 1.062581 AGGCAGCTATGAAGAGGGAGA 60.063 52.381 0.00 0.00 0.00 3.71
287 288 1.765314 GGCAGCTATGAAGAGGGAGAA 59.235 52.381 0.00 0.00 0.00 2.87
288 289 2.171448 GGCAGCTATGAAGAGGGAGAAA 59.829 50.000 0.00 0.00 0.00 2.52
289 290 3.370953 GGCAGCTATGAAGAGGGAGAAAA 60.371 47.826 0.00 0.00 0.00 2.29
290 291 3.876320 GCAGCTATGAAGAGGGAGAAAAG 59.124 47.826 0.00 0.00 0.00 2.27
291 292 4.383552 GCAGCTATGAAGAGGGAGAAAAGA 60.384 45.833 0.00 0.00 0.00 2.52
292 293 5.358922 CAGCTATGAAGAGGGAGAAAAGAG 58.641 45.833 0.00 0.00 0.00 2.85
293 294 5.128499 CAGCTATGAAGAGGGAGAAAAGAGA 59.872 44.000 0.00 0.00 0.00 3.10
294 295 5.723887 AGCTATGAAGAGGGAGAAAAGAGAA 59.276 40.000 0.00 0.00 0.00 2.87
295 296 5.815222 GCTATGAAGAGGGAGAAAAGAGAAC 59.185 44.000 0.00 0.00 0.00 3.01
296 297 6.351796 GCTATGAAGAGGGAGAAAAGAGAACT 60.352 42.308 0.00 0.00 0.00 3.01
297 298 7.147811 GCTATGAAGAGGGAGAAAAGAGAACTA 60.148 40.741 0.00 0.00 0.00 2.24
298 299 6.996180 TGAAGAGGGAGAAAAGAGAACTAA 57.004 37.500 0.00 0.00 0.00 2.24
299 300 7.560796 TGAAGAGGGAGAAAAGAGAACTAAT 57.439 36.000 0.00 0.00 0.00 1.73
300 301 7.616313 TGAAGAGGGAGAAAAGAGAACTAATC 58.384 38.462 0.00 0.00 0.00 1.75
301 302 6.553953 AGAGGGAGAAAAGAGAACTAATCC 57.446 41.667 0.00 0.00 0.00 3.01
302 303 6.026186 AGAGGGAGAAAAGAGAACTAATCCA 58.974 40.000 0.00 0.00 0.00 3.41
303 304 6.502158 AGAGGGAGAAAAGAGAACTAATCCAA 59.498 38.462 0.00 0.00 0.00 3.53
304 305 6.716284 AGGGAGAAAAGAGAACTAATCCAAG 58.284 40.000 0.00 0.00 0.00 3.61
305 306 6.502158 AGGGAGAAAAGAGAACTAATCCAAGA 59.498 38.462 0.00 0.00 0.00 3.02
306 307 7.017651 AGGGAGAAAAGAGAACTAATCCAAGAA 59.982 37.037 0.00 0.00 0.00 2.52
307 308 7.831690 GGGAGAAAAGAGAACTAATCCAAGAAT 59.168 37.037 0.00 0.00 0.00 2.40
308 309 9.237187 GGAGAAAAGAGAACTAATCCAAGAATT 57.763 33.333 0.00 0.00 0.00 2.17
329 330 8.684973 GAATTTGATTCTGGATGTTTTCTCTG 57.315 34.615 0.00 0.00 36.37 3.35
330 331 8.413309 AATTTGATTCTGGATGTTTTCTCTGA 57.587 30.769 0.00 0.00 0.00 3.27
331 332 7.444629 TTTGATTCTGGATGTTTTCTCTGAG 57.555 36.000 0.00 0.00 0.00 3.35
332 333 4.940046 TGATTCTGGATGTTTTCTCTGAGC 59.060 41.667 0.00 0.00 0.00 4.26
333 334 4.356405 TTCTGGATGTTTTCTCTGAGCA 57.644 40.909 0.00 0.00 0.00 4.26
334 335 4.356405 TCTGGATGTTTTCTCTGAGCAA 57.644 40.909 0.00 0.00 0.00 3.91
335 336 4.717877 TCTGGATGTTTTCTCTGAGCAAA 58.282 39.130 0.00 0.00 0.00 3.68
336 337 5.132502 TCTGGATGTTTTCTCTGAGCAAAA 58.867 37.500 4.09 7.31 0.00 2.44
337 338 5.009010 TCTGGATGTTTTCTCTGAGCAAAAC 59.991 40.000 23.51 23.51 41.13 2.43
342 343 6.064846 TGTTTTCTCTGAGCAAAACAGATC 57.935 37.500 26.21 9.74 43.99 2.75
343 344 5.824624 TGTTTTCTCTGAGCAAAACAGATCT 59.175 36.000 26.21 0.00 43.99 2.75
344 345 6.319658 TGTTTTCTCTGAGCAAAACAGATCTT 59.680 34.615 26.21 0.00 43.99 2.40
345 346 6.551385 TTTCTCTGAGCAAAACAGATCTTC 57.449 37.500 0.00 0.00 42.32 2.87
346 347 5.480642 TCTCTGAGCAAAACAGATCTTCT 57.519 39.130 0.00 0.00 42.32 2.85
507 523 1.518572 CGGTCGATCTTTCCCGTGG 60.519 63.158 1.98 0.00 35.78 4.94
591 634 4.369182 GTGTCGTATCCGATTCCAAGATT 58.631 43.478 0.00 0.00 46.30 2.40
803 859 5.751028 CGACTCCACATCTTTCTTCTTATCC 59.249 44.000 0.00 0.00 0.00 2.59
959 1080 3.517296 TTCAGGTGCATTTGTTCCCTA 57.483 42.857 0.00 0.00 0.00 3.53
1031 1155 8.079211 TCTAGAAAGCATTTATCTGGTAGTGT 57.921 34.615 0.00 0.00 39.27 3.55
1314 1444 8.960591 ACTCTTGATATTTTTGATCCACGAAAT 58.039 29.630 0.00 0.00 32.66 2.17
2241 2373 1.304891 ATGTAAGGGGCCAAGGCTAA 58.695 50.000 11.40 0.00 41.60 3.09
2279 2411 4.882842 TGAAAGGAAATAAACAAGGGGC 57.117 40.909 0.00 0.00 0.00 5.80
2866 3003 7.011994 TGATATGGGCATAGAACCATCATTTT 58.988 34.615 0.00 0.00 43.84 1.82
2882 3019 8.868916 ACCATCATTTTCAATAAAACGTAATGC 58.131 29.630 0.00 0.00 37.41 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.587522 GTAAGAGGGAAATGGGCATCC 58.412 52.381 0.00 0.00 34.85 3.51
1 2 2.091885 TGGTAAGAGGGAAATGGGCATC 60.092 50.000 0.00 0.00 0.00 3.91
2 3 1.929494 TGGTAAGAGGGAAATGGGCAT 59.071 47.619 0.00 0.00 0.00 4.40
3 4 1.005450 GTGGTAAGAGGGAAATGGGCA 59.995 52.381 0.00 0.00 0.00 5.36
4 5 1.685180 GGTGGTAAGAGGGAAATGGGC 60.685 57.143 0.00 0.00 0.00 5.36
5 6 1.063942 GGGTGGTAAGAGGGAAATGGG 60.064 57.143 0.00 0.00 0.00 4.00
6 7 1.923148 AGGGTGGTAAGAGGGAAATGG 59.077 52.381 0.00 0.00 0.00 3.16
7 8 4.166144 ACATAGGGTGGTAAGAGGGAAATG 59.834 45.833 0.00 0.00 0.00 2.32
8 9 4.380791 ACATAGGGTGGTAAGAGGGAAAT 58.619 43.478 0.00 0.00 0.00 2.17
9 10 3.810623 ACATAGGGTGGTAAGAGGGAAA 58.189 45.455 0.00 0.00 0.00 3.13
10 11 3.502051 ACATAGGGTGGTAAGAGGGAA 57.498 47.619 0.00 0.00 0.00 3.97
11 12 3.013648 AGAACATAGGGTGGTAAGAGGGA 59.986 47.826 0.00 0.00 0.00 4.20
12 13 3.385115 AGAACATAGGGTGGTAAGAGGG 58.615 50.000 0.00 0.00 0.00 4.30
13 14 5.437191 AAAGAACATAGGGTGGTAAGAGG 57.563 43.478 0.00 0.00 0.00 3.69
14 15 6.156429 AGGTAAAGAACATAGGGTGGTAAGAG 59.844 42.308 0.00 0.00 0.00 2.85
15 16 6.027482 AGGTAAAGAACATAGGGTGGTAAGA 58.973 40.000 0.00 0.00 0.00 2.10
16 17 6.309389 AGGTAAAGAACATAGGGTGGTAAG 57.691 41.667 0.00 0.00 0.00 2.34
17 18 7.191210 TCTAGGTAAAGAACATAGGGTGGTAA 58.809 38.462 0.00 0.00 41.73 2.85
18 19 6.744822 TCTAGGTAAAGAACATAGGGTGGTA 58.255 40.000 0.00 0.00 41.73 3.25
19 20 5.596763 TCTAGGTAAAGAACATAGGGTGGT 58.403 41.667 0.00 0.00 41.73 4.16
20 21 6.163135 CTCTAGGTAAAGAACATAGGGTGG 57.837 45.833 0.00 0.00 41.73 4.61
23 24 7.778853 TGTCTACTCTAGGTAAAGAACATAGGG 59.221 40.741 0.00 0.00 46.34 3.53
24 25 8.749026 TGTCTACTCTAGGTAAAGAACATAGG 57.251 38.462 0.00 0.00 41.73 2.57
25 26 9.398538 ACTGTCTACTCTAGGTAAAGAACATAG 57.601 37.037 0.00 0.00 42.57 2.23
26 27 9.175312 CACTGTCTACTCTAGGTAAAGAACATA 57.825 37.037 0.00 0.00 0.00 2.29
27 28 7.889073 TCACTGTCTACTCTAGGTAAAGAACAT 59.111 37.037 0.00 0.00 0.00 2.71
28 29 7.174599 GTCACTGTCTACTCTAGGTAAAGAACA 59.825 40.741 0.00 0.00 0.00 3.18
29 30 7.361971 GGTCACTGTCTACTCTAGGTAAAGAAC 60.362 44.444 0.00 0.00 0.00 3.01
30 31 6.658391 GGTCACTGTCTACTCTAGGTAAAGAA 59.342 42.308 0.00 0.00 0.00 2.52
31 32 6.179040 GGTCACTGTCTACTCTAGGTAAAGA 58.821 44.000 0.00 0.00 0.00 2.52
32 33 5.944599 TGGTCACTGTCTACTCTAGGTAAAG 59.055 44.000 0.00 0.00 0.00 1.85
33 34 5.709164 GTGGTCACTGTCTACTCTAGGTAAA 59.291 44.000 0.00 0.00 0.00 2.01
34 35 5.013913 AGTGGTCACTGTCTACTCTAGGTAA 59.986 44.000 2.46 0.00 40.75 2.85
35 36 4.535294 AGTGGTCACTGTCTACTCTAGGTA 59.465 45.833 2.46 0.00 40.75 3.08
36 37 3.331294 AGTGGTCACTGTCTACTCTAGGT 59.669 47.826 2.46 0.00 40.75 3.08
37 38 3.942748 GAGTGGTCACTGTCTACTCTAGG 59.057 52.174 8.49 0.00 42.66 3.02
38 39 4.839121 AGAGTGGTCACTGTCTACTCTAG 58.161 47.826 16.87 0.00 46.49 2.43
39 40 4.912317 AGAGTGGTCACTGTCTACTCTA 57.088 45.455 16.87 0.00 46.49 2.43
40 41 3.799432 AGAGTGGTCACTGTCTACTCT 57.201 47.619 13.93 13.93 44.67 3.24
47 48 0.104934 AAGGGGAGAGTGGTCACTGT 60.105 55.000 8.49 4.27 42.66 3.55
48 49 0.610687 GAAGGGGAGAGTGGTCACTG 59.389 60.000 8.49 0.00 42.66 3.66
49 50 0.489567 AGAAGGGGAGAGTGGTCACT 59.510 55.000 2.94 2.94 45.84 3.41
50 51 1.353091 AAGAAGGGGAGAGTGGTCAC 58.647 55.000 0.00 0.00 0.00 3.67
51 52 2.106511 CAAAAGAAGGGGAGAGTGGTCA 59.893 50.000 0.00 0.00 0.00 4.02
52 53 2.553247 CCAAAAGAAGGGGAGAGTGGTC 60.553 54.545 0.00 0.00 0.00 4.02
53 54 1.425448 CCAAAAGAAGGGGAGAGTGGT 59.575 52.381 0.00 0.00 0.00 4.16
54 55 1.705186 TCCAAAAGAAGGGGAGAGTGG 59.295 52.381 0.00 0.00 0.00 4.00
55 56 3.728385 ATCCAAAAGAAGGGGAGAGTG 57.272 47.619 0.00 0.00 33.47 3.51
56 57 3.523972 GGTATCCAAAAGAAGGGGAGAGT 59.476 47.826 0.00 0.00 33.47 3.24
57 58 3.432326 CGGTATCCAAAAGAAGGGGAGAG 60.432 52.174 0.00 0.00 33.47 3.20
58 59 2.504175 CGGTATCCAAAAGAAGGGGAGA 59.496 50.000 0.00 0.00 33.47 3.71
59 60 2.421529 CCGGTATCCAAAAGAAGGGGAG 60.422 54.545 0.00 0.00 33.47 4.30
60 61 1.562475 CCGGTATCCAAAAGAAGGGGA 59.438 52.381 0.00 0.00 34.70 4.81
61 62 1.562475 TCCGGTATCCAAAAGAAGGGG 59.438 52.381 0.00 0.00 0.00 4.79
62 63 2.504175 TCTCCGGTATCCAAAAGAAGGG 59.496 50.000 0.00 0.00 0.00 3.95
63 64 3.906720 TCTCCGGTATCCAAAAGAAGG 57.093 47.619 0.00 0.00 0.00 3.46
64 65 5.472137 TGTTTTCTCCGGTATCCAAAAGAAG 59.528 40.000 0.00 0.00 0.00 2.85
65 66 5.378332 TGTTTTCTCCGGTATCCAAAAGAA 58.622 37.500 0.00 0.00 0.00 2.52
66 67 4.975631 TGTTTTCTCCGGTATCCAAAAGA 58.024 39.130 0.00 0.00 0.00 2.52
67 68 5.009210 TGTTGTTTTCTCCGGTATCCAAAAG 59.991 40.000 0.00 0.00 0.00 2.27
68 69 4.888239 TGTTGTTTTCTCCGGTATCCAAAA 59.112 37.500 0.00 0.00 0.00 2.44
69 70 4.276431 GTGTTGTTTTCTCCGGTATCCAAA 59.724 41.667 0.00 0.00 0.00 3.28
70 71 3.816523 GTGTTGTTTTCTCCGGTATCCAA 59.183 43.478 0.00 0.00 0.00 3.53
71 72 3.071892 AGTGTTGTTTTCTCCGGTATCCA 59.928 43.478 0.00 0.00 0.00 3.41
72 73 3.671716 AGTGTTGTTTTCTCCGGTATCC 58.328 45.455 0.00 0.00 0.00 2.59
73 74 3.683340 GGAGTGTTGTTTTCTCCGGTATC 59.317 47.826 0.00 0.00 38.37 2.24
74 75 3.671716 GGAGTGTTGTTTTCTCCGGTAT 58.328 45.455 0.00 0.00 38.37 2.73
75 76 3.116079 GGAGTGTTGTTTTCTCCGGTA 57.884 47.619 0.00 0.00 38.37 4.02
76 77 1.963172 GGAGTGTTGTTTTCTCCGGT 58.037 50.000 0.00 0.00 38.37 5.28
79 80 5.612351 AGAAGTAGGAGTGTTGTTTTCTCC 58.388 41.667 0.00 0.00 45.56 3.71
80 81 7.659186 TCTAGAAGTAGGAGTGTTGTTTTCTC 58.341 38.462 0.00 0.00 0.00 2.87
81 82 7.598759 TCTAGAAGTAGGAGTGTTGTTTTCT 57.401 36.000 0.00 0.00 0.00 2.52
82 83 8.713271 CAATCTAGAAGTAGGAGTGTTGTTTTC 58.287 37.037 0.00 0.00 0.00 2.29
83 84 8.211629 ACAATCTAGAAGTAGGAGTGTTGTTTT 58.788 33.333 0.00 0.00 0.00 2.43
84 85 7.736893 ACAATCTAGAAGTAGGAGTGTTGTTT 58.263 34.615 0.00 0.00 0.00 2.83
85 86 7.304497 ACAATCTAGAAGTAGGAGTGTTGTT 57.696 36.000 0.00 0.00 0.00 2.83
86 87 6.919775 ACAATCTAGAAGTAGGAGTGTTGT 57.080 37.500 0.00 0.00 0.00 3.32
87 88 9.360093 CTAAACAATCTAGAAGTAGGAGTGTTG 57.640 37.037 8.36 0.00 31.17 3.33
88 89 9.310449 TCTAAACAATCTAGAAGTAGGAGTGTT 57.690 33.333 0.00 0.00 31.61 3.32
89 90 8.880991 TCTAAACAATCTAGAAGTAGGAGTGT 57.119 34.615 0.00 0.00 0.00 3.55
114 115 9.719355 GGGTGACTAAACCATAATTTTTCAAAT 57.281 29.630 0.00 0.00 42.47 2.32
115 116 8.929487 AGGGTGACTAAACCATAATTTTTCAAA 58.071 29.630 0.00 0.00 42.47 2.69
116 117 8.364142 CAGGGTGACTAAACCATAATTTTTCAA 58.636 33.333 0.00 0.00 42.47 2.69
117 118 7.726291 TCAGGGTGACTAAACCATAATTTTTCA 59.274 33.333 0.00 0.00 42.47 2.69
118 119 8.117813 TCAGGGTGACTAAACCATAATTTTTC 57.882 34.615 0.00 0.00 42.47 2.29
119 120 7.728532 ACTCAGGGTGACTAAACCATAATTTTT 59.271 33.333 0.00 0.00 42.47 1.94
120 121 7.238710 ACTCAGGGTGACTAAACCATAATTTT 58.761 34.615 0.00 0.00 42.47 1.82
121 122 6.790319 ACTCAGGGTGACTAAACCATAATTT 58.210 36.000 0.00 0.00 42.47 1.82
122 123 6.388619 ACTCAGGGTGACTAAACCATAATT 57.611 37.500 0.00 0.00 42.47 1.40
123 124 6.388619 AACTCAGGGTGACTAAACCATAAT 57.611 37.500 0.00 0.00 42.47 1.28
124 125 5.836024 AACTCAGGGTGACTAAACCATAA 57.164 39.130 0.00 0.00 42.47 1.90
125 126 5.836024 AAACTCAGGGTGACTAAACCATA 57.164 39.130 0.00 0.00 42.47 2.74
126 127 4.724279 AAACTCAGGGTGACTAAACCAT 57.276 40.909 0.00 0.00 42.47 3.55
127 128 5.836024 ATAAACTCAGGGTGACTAAACCA 57.164 39.130 0.00 0.00 42.47 3.67
128 129 7.392418 AGTAATAAACTCAGGGTGACTAAACC 58.608 38.462 0.00 0.00 34.56 3.27
143 144 9.686683 AGATTTTATGCACCAGAGTAATAAACT 57.313 29.630 0.00 0.00 42.80 2.66
144 145 9.722056 CAGATTTTATGCACCAGAGTAATAAAC 57.278 33.333 0.00 0.00 29.80 2.01
145 146 8.902806 CCAGATTTTATGCACCAGAGTAATAAA 58.097 33.333 0.00 0.00 0.00 1.40
146 147 8.271458 TCCAGATTTTATGCACCAGAGTAATAA 58.729 33.333 0.00 0.00 0.00 1.40
147 148 7.801104 TCCAGATTTTATGCACCAGAGTAATA 58.199 34.615 0.00 0.00 0.00 0.98
148 149 6.662755 TCCAGATTTTATGCACCAGAGTAAT 58.337 36.000 0.00 0.00 0.00 1.89
149 150 6.061022 TCCAGATTTTATGCACCAGAGTAA 57.939 37.500 0.00 0.00 0.00 2.24
150 151 5.692115 TCCAGATTTTATGCACCAGAGTA 57.308 39.130 0.00 0.00 0.00 2.59
151 152 4.574674 TCCAGATTTTATGCACCAGAGT 57.425 40.909 0.00 0.00 0.00 3.24
152 153 6.016777 GGTATTCCAGATTTTATGCACCAGAG 60.017 42.308 0.00 0.00 0.00 3.35
153 154 5.827797 GGTATTCCAGATTTTATGCACCAGA 59.172 40.000 0.00 0.00 0.00 3.86
154 155 5.010012 GGGTATTCCAGATTTTATGCACCAG 59.990 44.000 0.00 0.00 35.00 4.00
155 156 4.892934 GGGTATTCCAGATTTTATGCACCA 59.107 41.667 0.00 0.00 35.00 4.17
156 157 4.280929 GGGGTATTCCAGATTTTATGCACC 59.719 45.833 0.00 0.00 37.22 5.01
157 158 4.280929 GGGGGTATTCCAGATTTTATGCAC 59.719 45.833 0.00 0.00 37.22 4.57
158 159 4.169856 AGGGGGTATTCCAGATTTTATGCA 59.830 41.667 0.00 0.00 37.22 3.96
159 160 4.740902 AGGGGGTATTCCAGATTTTATGC 58.259 43.478 0.00 0.00 37.22 3.14
160 161 6.206180 AGAGGGGGTATTCCAGATTTTATG 57.794 41.667 0.00 0.00 37.22 1.90
161 162 5.313506 GGAGAGGGGGTATTCCAGATTTTAT 59.686 44.000 0.00 0.00 37.22 1.40
162 163 4.663592 GGAGAGGGGGTATTCCAGATTTTA 59.336 45.833 0.00 0.00 37.22 1.52
163 164 3.463704 GGAGAGGGGGTATTCCAGATTTT 59.536 47.826 0.00 0.00 37.22 1.82
164 165 3.056832 GGAGAGGGGGTATTCCAGATTT 58.943 50.000 0.00 0.00 37.22 2.17
165 166 2.254023 AGGAGAGGGGGTATTCCAGATT 59.746 50.000 0.00 0.00 37.22 2.40
166 167 1.876473 AGGAGAGGGGGTATTCCAGAT 59.124 52.381 0.00 0.00 37.22 2.90
167 168 1.330155 AGGAGAGGGGGTATTCCAGA 58.670 55.000 0.00 0.00 37.22 3.86
168 169 2.198334 AAGGAGAGGGGGTATTCCAG 57.802 55.000 0.00 0.00 37.22 3.86
169 170 2.580783 CAAAAGGAGAGGGGGTATTCCA 59.419 50.000 0.00 0.00 37.22 3.53
170 171 2.850568 TCAAAAGGAGAGGGGGTATTCC 59.149 50.000 0.00 0.00 0.00 3.01
171 172 4.797912 ATCAAAAGGAGAGGGGGTATTC 57.202 45.455 0.00 0.00 0.00 1.75
172 173 4.796265 AGAATCAAAAGGAGAGGGGGTATT 59.204 41.667 0.00 0.00 0.00 1.89
173 174 4.166919 CAGAATCAAAAGGAGAGGGGGTAT 59.833 45.833 0.00 0.00 0.00 2.73
174 175 3.523564 CAGAATCAAAAGGAGAGGGGGTA 59.476 47.826 0.00 0.00 0.00 3.69
175 176 2.310052 CAGAATCAAAAGGAGAGGGGGT 59.690 50.000 0.00 0.00 0.00 4.95
176 177 2.947695 GCAGAATCAAAAGGAGAGGGGG 60.948 54.545 0.00 0.00 0.00 5.40
177 178 2.025510 AGCAGAATCAAAAGGAGAGGGG 60.026 50.000 0.00 0.00 0.00 4.79
178 179 3.362870 AGCAGAATCAAAAGGAGAGGG 57.637 47.619 0.00 0.00 0.00 4.30
179 180 6.038050 GTCAATAGCAGAATCAAAAGGAGAGG 59.962 42.308 0.00 0.00 0.00 3.69
180 181 6.596888 TGTCAATAGCAGAATCAAAAGGAGAG 59.403 38.462 0.00 0.00 0.00 3.20
181 182 6.475504 TGTCAATAGCAGAATCAAAAGGAGA 58.524 36.000 0.00 0.00 0.00 3.71
182 183 6.748333 TGTCAATAGCAGAATCAAAAGGAG 57.252 37.500 0.00 0.00 0.00 3.69
183 184 7.523293 TTTGTCAATAGCAGAATCAAAAGGA 57.477 32.000 0.00 0.00 0.00 3.36
184 185 7.277098 CCATTTGTCAATAGCAGAATCAAAAGG 59.723 37.037 0.00 0.00 0.00 3.11
185 186 7.201496 GCCATTTGTCAATAGCAGAATCAAAAG 60.201 37.037 0.00 0.00 28.24 2.27
186 187 6.591062 GCCATTTGTCAATAGCAGAATCAAAA 59.409 34.615 0.00 0.00 28.24 2.44
187 188 6.101332 GCCATTTGTCAATAGCAGAATCAAA 58.899 36.000 0.00 0.00 28.24 2.69
188 189 5.185442 TGCCATTTGTCAATAGCAGAATCAA 59.815 36.000 1.69 0.00 32.74 2.57
189 190 4.705991 TGCCATTTGTCAATAGCAGAATCA 59.294 37.500 1.69 0.00 32.74 2.57
190 191 5.252969 TGCCATTTGTCAATAGCAGAATC 57.747 39.130 1.69 0.00 32.74 2.52
191 192 5.664294 TTGCCATTTGTCAATAGCAGAAT 57.336 34.783 5.24 0.00 38.14 2.40
192 193 5.664294 ATTGCCATTTGTCAATAGCAGAA 57.336 34.783 5.24 0.00 38.14 3.02
193 194 5.664294 AATTGCCATTTGTCAATAGCAGA 57.336 34.783 5.24 0.09 38.14 4.26
194 195 7.830940 TTAAATTGCCATTTGTCAATAGCAG 57.169 32.000 6.03 0.00 38.14 4.24
195 196 8.502387 GTTTTAAATTGCCATTTGTCAATAGCA 58.498 29.630 6.03 1.69 35.50 3.49
196 197 8.720562 AGTTTTAAATTGCCATTTGTCAATAGC 58.279 29.630 6.03 0.00 34.29 2.97
200 201 9.606631 ACTTAGTTTTAAATTGCCATTTGTCAA 57.393 25.926 6.03 0.00 34.29 3.18
201 202 9.606631 AACTTAGTTTTAAATTGCCATTTGTCA 57.393 25.926 6.03 0.00 34.29 3.58
202 203 9.862585 CAACTTAGTTTTAAATTGCCATTTGTC 57.137 29.630 6.03 0.00 34.29 3.18
203 204 9.389755 ACAACTTAGTTTTAAATTGCCATTTGT 57.610 25.926 6.03 0.00 31.04 2.83
204 205 9.862585 GACAACTTAGTTTTAAATTGCCATTTG 57.137 29.630 6.03 0.00 31.04 2.32
205 206 9.051679 GGACAACTTAGTTTTAAATTGCCATTT 57.948 29.630 0.00 0.98 31.04 2.32
206 207 8.207545 TGGACAACTTAGTTTTAAATTGCCATT 58.792 29.630 0.00 0.00 32.53 3.16
207 208 7.731054 TGGACAACTTAGTTTTAAATTGCCAT 58.269 30.769 0.00 0.00 32.53 4.40
208 209 7.113658 TGGACAACTTAGTTTTAAATTGCCA 57.886 32.000 0.00 0.00 33.75 4.92
209 210 9.135843 GTATGGACAACTTAGTTTTAAATTGCC 57.864 33.333 0.00 0.00 31.04 4.52
210 211 9.685828 TGTATGGACAACTTAGTTTTAAATTGC 57.314 29.630 0.00 0.00 31.04 3.56
216 217 9.411189 ACCTTTTGTATGGACAACTTAGTTTTA 57.589 29.630 0.00 0.00 45.29 1.52
217 218 8.194769 CACCTTTTGTATGGACAACTTAGTTTT 58.805 33.333 0.00 0.00 45.29 2.43
218 219 7.558444 TCACCTTTTGTATGGACAACTTAGTTT 59.442 33.333 0.00 0.00 45.29 2.66
219 220 7.057894 TCACCTTTTGTATGGACAACTTAGTT 58.942 34.615 0.00 0.00 45.29 2.24
220 221 6.597562 TCACCTTTTGTATGGACAACTTAGT 58.402 36.000 0.00 0.00 45.29 2.24
221 222 6.934645 TCTCACCTTTTGTATGGACAACTTAG 59.065 38.462 0.00 0.00 45.29 2.18
222 223 6.833041 TCTCACCTTTTGTATGGACAACTTA 58.167 36.000 0.00 0.00 45.29 2.24
223 224 5.690865 TCTCACCTTTTGTATGGACAACTT 58.309 37.500 0.00 0.00 45.29 2.66
224 225 5.304686 TCTCACCTTTTGTATGGACAACT 57.695 39.130 0.00 0.00 45.29 3.16
225 226 4.455877 CCTCTCACCTTTTGTATGGACAAC 59.544 45.833 0.00 0.00 45.29 3.32
226 227 4.506625 CCCTCTCACCTTTTGTATGGACAA 60.507 45.833 0.00 0.00 43.94 3.18
227 228 3.009033 CCCTCTCACCTTTTGTATGGACA 59.991 47.826 0.00 0.00 0.00 4.02
228 229 3.009143 ACCCTCTCACCTTTTGTATGGAC 59.991 47.826 0.00 0.00 0.00 4.02
229 230 3.009033 CACCCTCTCACCTTTTGTATGGA 59.991 47.826 0.00 0.00 0.00 3.41
230 231 3.347216 CACCCTCTCACCTTTTGTATGG 58.653 50.000 0.00 0.00 0.00 2.74
231 232 3.009033 TCCACCCTCTCACCTTTTGTATG 59.991 47.826 0.00 0.00 0.00 2.39
232 233 3.256704 TCCACCCTCTCACCTTTTGTAT 58.743 45.455 0.00 0.00 0.00 2.29
233 234 2.637872 CTCCACCCTCTCACCTTTTGTA 59.362 50.000 0.00 0.00 0.00 2.41
234 235 1.421646 CTCCACCCTCTCACCTTTTGT 59.578 52.381 0.00 0.00 0.00 2.83
235 236 1.421646 ACTCCACCCTCTCACCTTTTG 59.578 52.381 0.00 0.00 0.00 2.44
236 237 1.821088 ACTCCACCCTCTCACCTTTT 58.179 50.000 0.00 0.00 0.00 2.27
237 238 2.715763 TACTCCACCCTCTCACCTTT 57.284 50.000 0.00 0.00 0.00 3.11
238 239 2.950990 ATACTCCACCCTCTCACCTT 57.049 50.000 0.00 0.00 0.00 3.50
239 240 4.348020 TTTATACTCCACCCTCTCACCT 57.652 45.455 0.00 0.00 0.00 4.00
240 241 6.295916 CCATATTTATACTCCACCCTCTCACC 60.296 46.154 0.00 0.00 0.00 4.02
241 242 6.497259 TCCATATTTATACTCCACCCTCTCAC 59.503 42.308 0.00 0.00 0.00 3.51
242 243 6.630131 TCCATATTTATACTCCACCCTCTCA 58.370 40.000 0.00 0.00 0.00 3.27
243 244 6.155393 CCTCCATATTTATACTCCACCCTCTC 59.845 46.154 0.00 0.00 0.00 3.20
244 245 6.026186 CCTCCATATTTATACTCCACCCTCT 58.974 44.000 0.00 0.00 0.00 3.69
245 246 5.338463 GCCTCCATATTTATACTCCACCCTC 60.338 48.000 0.00 0.00 0.00 4.30
246 247 4.536489 GCCTCCATATTTATACTCCACCCT 59.464 45.833 0.00 0.00 0.00 4.34
247 248 4.288626 TGCCTCCATATTTATACTCCACCC 59.711 45.833 0.00 0.00 0.00 4.61
248 249 5.491982 CTGCCTCCATATTTATACTCCACC 58.508 45.833 0.00 0.00 0.00 4.61
249 250 4.938226 GCTGCCTCCATATTTATACTCCAC 59.062 45.833 0.00 0.00 0.00 4.02
250 251 4.846367 AGCTGCCTCCATATTTATACTCCA 59.154 41.667 0.00 0.00 0.00 3.86
251 252 5.428184 AGCTGCCTCCATATTTATACTCC 57.572 43.478 0.00 0.00 0.00 3.85
252 253 7.786030 TCATAGCTGCCTCCATATTTATACTC 58.214 38.462 0.00 0.00 0.00 2.59
253 254 7.739995 TCATAGCTGCCTCCATATTTATACT 57.260 36.000 0.00 0.00 0.00 2.12
254 255 8.260818 TCTTCATAGCTGCCTCCATATTTATAC 58.739 37.037 0.00 0.00 0.00 1.47
255 256 8.379428 TCTTCATAGCTGCCTCCATATTTATA 57.621 34.615 0.00 0.00 0.00 0.98
256 257 7.262990 TCTTCATAGCTGCCTCCATATTTAT 57.737 36.000 0.00 0.00 0.00 1.40
257 258 6.296087 CCTCTTCATAGCTGCCTCCATATTTA 60.296 42.308 0.00 0.00 0.00 1.40
258 259 5.514484 CCTCTTCATAGCTGCCTCCATATTT 60.514 44.000 0.00 0.00 0.00 1.40
259 260 4.019501 CCTCTTCATAGCTGCCTCCATATT 60.020 45.833 0.00 0.00 0.00 1.28
260 261 3.518705 CCTCTTCATAGCTGCCTCCATAT 59.481 47.826 0.00 0.00 0.00 1.78
261 262 2.902486 CCTCTTCATAGCTGCCTCCATA 59.098 50.000 0.00 0.00 0.00 2.74
262 263 1.698532 CCTCTTCATAGCTGCCTCCAT 59.301 52.381 0.00 0.00 0.00 3.41
263 264 1.126488 CCTCTTCATAGCTGCCTCCA 58.874 55.000 0.00 0.00 0.00 3.86
264 265 0.396060 CCCTCTTCATAGCTGCCTCC 59.604 60.000 0.00 0.00 0.00 4.30
265 266 1.344114 CTCCCTCTTCATAGCTGCCTC 59.656 57.143 0.00 0.00 0.00 4.70
266 267 1.062581 TCTCCCTCTTCATAGCTGCCT 60.063 52.381 0.00 0.00 0.00 4.75
267 268 1.418334 TCTCCCTCTTCATAGCTGCC 58.582 55.000 0.00 0.00 0.00 4.85
268 269 3.550437 TTTCTCCCTCTTCATAGCTGC 57.450 47.619 0.00 0.00 0.00 5.25
269 270 5.128499 TCTCTTTTCTCCCTCTTCATAGCTG 59.872 44.000 0.00 0.00 0.00 4.24
270 271 5.276440 TCTCTTTTCTCCCTCTTCATAGCT 58.724 41.667 0.00 0.00 0.00 3.32
271 272 5.606348 TCTCTTTTCTCCCTCTTCATAGC 57.394 43.478 0.00 0.00 0.00 2.97
272 273 7.181569 AGTTCTCTTTTCTCCCTCTTCATAG 57.818 40.000 0.00 0.00 0.00 2.23
273 274 8.666129 TTAGTTCTCTTTTCTCCCTCTTCATA 57.334 34.615 0.00 0.00 0.00 2.15
274 275 7.560796 TTAGTTCTCTTTTCTCCCTCTTCAT 57.439 36.000 0.00 0.00 0.00 2.57
275 276 6.996180 TTAGTTCTCTTTTCTCCCTCTTCA 57.004 37.500 0.00 0.00 0.00 3.02
276 277 7.045416 GGATTAGTTCTCTTTTCTCCCTCTTC 58.955 42.308 0.00 0.00 0.00 2.87
277 278 6.502158 TGGATTAGTTCTCTTTTCTCCCTCTT 59.498 38.462 0.00 0.00 0.00 2.85
278 279 6.026186 TGGATTAGTTCTCTTTTCTCCCTCT 58.974 40.000 0.00 0.00 0.00 3.69
279 280 6.301169 TGGATTAGTTCTCTTTTCTCCCTC 57.699 41.667 0.00 0.00 0.00 4.30
280 281 6.502158 TCTTGGATTAGTTCTCTTTTCTCCCT 59.498 38.462 0.00 0.00 0.00 4.20
281 282 6.712276 TCTTGGATTAGTTCTCTTTTCTCCC 58.288 40.000 0.00 0.00 0.00 4.30
282 283 8.800370 ATTCTTGGATTAGTTCTCTTTTCTCC 57.200 34.615 0.00 0.00 0.00 3.71
304 305 8.517878 TCAGAGAAAACATCCAGAATCAAATTC 58.482 33.333 0.00 0.00 39.56 2.17
305 306 8.413309 TCAGAGAAAACATCCAGAATCAAATT 57.587 30.769 0.00 0.00 0.00 1.82
306 307 7.362747 GCTCAGAGAAAACATCCAGAATCAAAT 60.363 37.037 0.00 0.00 0.00 2.32
307 308 6.072286 GCTCAGAGAAAACATCCAGAATCAAA 60.072 38.462 0.00 0.00 0.00 2.69
308 309 5.413833 GCTCAGAGAAAACATCCAGAATCAA 59.586 40.000 0.00 0.00 0.00 2.57
309 310 4.940046 GCTCAGAGAAAACATCCAGAATCA 59.060 41.667 0.00 0.00 0.00 2.57
310 311 4.940046 TGCTCAGAGAAAACATCCAGAATC 59.060 41.667 0.00 0.00 0.00 2.52
311 312 4.914983 TGCTCAGAGAAAACATCCAGAAT 58.085 39.130 0.00 0.00 0.00 2.40
312 313 4.356405 TGCTCAGAGAAAACATCCAGAA 57.644 40.909 0.00 0.00 0.00 3.02
313 314 4.356405 TTGCTCAGAGAAAACATCCAGA 57.644 40.909 0.00 0.00 0.00 3.86
314 315 5.218139 GTTTTGCTCAGAGAAAACATCCAG 58.782 41.667 21.36 0.00 40.35 3.86
315 316 4.644234 TGTTTTGCTCAGAGAAAACATCCA 59.356 37.500 23.28 10.23 43.64 3.41
316 317 5.009010 TCTGTTTTGCTCAGAGAAAACATCC 59.991 40.000 25.24 9.88 45.96 3.51
317 318 6.064846 TCTGTTTTGCTCAGAGAAAACATC 57.935 37.500 25.24 13.15 45.96 3.06
318 319 6.489361 AGATCTGTTTTGCTCAGAGAAAACAT 59.511 34.615 25.24 18.14 45.96 2.71
319 320 5.824624 AGATCTGTTTTGCTCAGAGAAAACA 59.175 36.000 24.37 24.37 45.34 2.83
320 321 6.311055 AGATCTGTTTTGCTCAGAGAAAAC 57.689 37.500 20.39 20.39 43.66 2.43
321 322 6.769822 AGAAGATCTGTTTTGCTCAGAGAAAA 59.230 34.615 0.00 0.00 43.66 2.29
322 323 6.294473 AGAAGATCTGTTTTGCTCAGAGAAA 58.706 36.000 0.00 0.00 43.66 2.52
323 324 5.862845 AGAAGATCTGTTTTGCTCAGAGAA 58.137 37.500 0.00 0.00 43.66 2.87
324 325 5.477510 GAGAAGATCTGTTTTGCTCAGAGA 58.522 41.667 0.00 0.00 43.66 3.10
325 326 4.630940 GGAGAAGATCTGTTTTGCTCAGAG 59.369 45.833 0.00 0.00 43.66 3.35
326 327 4.285517 AGGAGAAGATCTGTTTTGCTCAGA 59.714 41.667 0.00 0.00 44.37 3.27
327 328 4.577875 AGGAGAAGATCTGTTTTGCTCAG 58.422 43.478 0.00 0.00 0.00 3.35
328 329 4.040829 TGAGGAGAAGATCTGTTTTGCTCA 59.959 41.667 12.82 12.82 0.00 4.26
329 330 4.573900 TGAGGAGAAGATCTGTTTTGCTC 58.426 43.478 0.00 3.52 0.00 4.26
330 331 4.565236 CCTGAGGAGAAGATCTGTTTTGCT 60.565 45.833 0.00 0.00 0.00 3.91
331 332 3.688673 CCTGAGGAGAAGATCTGTTTTGC 59.311 47.826 0.00 0.00 0.00 3.68
332 333 4.260170 CCCTGAGGAGAAGATCTGTTTTG 58.740 47.826 0.00 0.00 33.47 2.44
333 334 3.308046 GCCCTGAGGAGAAGATCTGTTTT 60.308 47.826 0.00 0.00 33.47 2.43
334 335 2.238395 GCCCTGAGGAGAAGATCTGTTT 59.762 50.000 0.00 0.00 33.47 2.83
335 336 1.836802 GCCCTGAGGAGAAGATCTGTT 59.163 52.381 0.00 0.00 33.47 3.16
336 337 1.494960 GCCCTGAGGAGAAGATCTGT 58.505 55.000 0.00 0.00 33.47 3.41
337 338 0.758123 GGCCCTGAGGAGAAGATCTG 59.242 60.000 0.00 0.00 33.47 2.90
338 339 0.758685 CGGCCCTGAGGAGAAGATCT 60.759 60.000 0.00 0.00 33.47 2.75
339 340 1.745264 CGGCCCTGAGGAGAAGATC 59.255 63.158 0.00 0.00 33.47 2.75
340 341 1.764054 CCGGCCCTGAGGAGAAGAT 60.764 63.158 0.00 0.00 33.47 2.40
341 342 2.364317 CCGGCCCTGAGGAGAAGA 60.364 66.667 0.00 0.00 33.47 2.87
342 343 4.168291 GCCGGCCCTGAGGAGAAG 62.168 72.222 18.11 0.00 33.47 2.85
507 523 0.249676 GGGGAAGAGGAAACGAGGAC 59.750 60.000 0.00 0.00 0.00 3.85
905 1016 1.099879 GCCAAATCAGCAGATCCGCT 61.100 55.000 0.00 0.00 45.21 5.52
1031 1155 7.954666 TTTTCCTTCTTTCTCTTCCTTTTGA 57.045 32.000 0.00 0.00 0.00 2.69
1291 1421 8.810427 CCAATTTCGTGGATCAAAAATATCAAG 58.190 33.333 0.00 0.00 41.65 3.02
1314 1444 5.553162 AGCCTTATCATCCAGATTATCCCAA 59.447 40.000 0.00 0.00 38.19 4.12
1426 1556 7.121168 TCCATTGCTCAACTTTCTCGAATAATT 59.879 33.333 0.00 0.00 0.00 1.40
2241 2373 6.493166 TCCTTTCATGTTGGAACCATTATCT 58.507 36.000 0.00 0.00 0.00 1.98
2866 3003 9.309516 CTTCCTAGTAGCATTACGTTTTATTGA 57.690 33.333 0.00 0.00 34.88 2.57
3079 3216 5.458452 CACAACATTTGCGTAGTTCAACATT 59.542 36.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.