Multiple sequence alignment - TraesCS1A01G388000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G388000 chr1A 100.000 5252 0 0 962 6213 556800655 556795404 0.000000e+00 9699.0
1 TraesCS1A01G388000 chr1A 100.000 748 0 0 1 748 556801616 556800869 0.000000e+00 1382.0
2 TraesCS1A01G388000 chr1A 96.053 76 3 0 2426 2501 163673034 163673109 2.350000e-24 124.0
3 TraesCS1A01G388000 chr1A 85.841 113 16 0 3165 3277 556798389 556798277 3.040000e-23 121.0
4 TraesCS1A01G388000 chr1A 85.841 113 16 0 3228 3340 556798452 556798340 3.040000e-23 121.0
5 TraesCS1A01G388000 chr1A 94.737 76 4 0 2426 2501 151427094 151427169 1.090000e-22 119.0
6 TraesCS1A01G388000 chr1A 86.316 95 11 1 2229 2323 543185298 543185206 1.100000e-17 102.0
7 TraesCS1A01G388000 chr1A 85.870 92 13 0 2229 2320 124881841 124881932 1.430000e-16 99.0
8 TraesCS1A01G388000 chr1A 88.889 45 4 1 635 679 556949270 556949227 3.000000e-03 54.7
9 TraesCS1A01G388000 chr1B 94.336 2401 112 12 2863 5241 640562063 640559665 0.000000e+00 3659.0
10 TraesCS1A01G388000 chr1B 93.052 1353 82 8 1346 2690 640563407 640562059 0.000000e+00 1967.0
11 TraesCS1A01G388000 chr1B 92.500 320 17 2 962 1274 640563733 640563414 9.500000e-123 451.0
12 TraesCS1A01G388000 chr1B 91.228 342 9 7 5883 6213 640558156 640557825 4.420000e-121 446.0
13 TraesCS1A01G388000 chr1B 81.063 602 67 24 6 564 640564541 640563944 2.660000e-118 436.0
14 TraesCS1A01G388000 chr1B 80.531 452 29 25 5294 5741 640559420 640559024 6.090000e-75 292.0
15 TraesCS1A01G388000 chr1B 93.333 90 5 1 616 704 640563937 640563848 1.410000e-26 132.0
16 TraesCS1A01G388000 chr1B 85.321 109 16 0 3228 3336 640561761 640561653 5.090000e-21 113.0
17 TraesCS1A01G388000 chr1B 91.304 46 2 2 5247 5292 30543247 30543290 1.870000e-05 62.1
18 TraesCS1A01G388000 chr1D 93.747 2431 84 24 2861 5246 464325207 464322800 0.000000e+00 3585.0
19 TraesCS1A01G388000 chr1D 94.107 1731 66 19 976 2694 464326905 464325199 0.000000e+00 2599.0
20 TraesCS1A01G388000 chr1D 82.410 722 58 28 25 712 464328012 464327326 3.250000e-157 566.0
21 TraesCS1A01G388000 chr1D 93.958 331 9 5 5883 6213 464321701 464321382 2.010000e-134 490.0
22 TraesCS1A01G388000 chr1D 86.813 273 12 16 5294 5555 464322546 464322287 3.670000e-72 283.0
23 TraesCS1A01G388000 chr1D 95.205 146 7 0 2715 2860 193367311 193367166 1.350000e-56 231.0
24 TraesCS1A01G388000 chr1D 90.123 162 14 2 2708 2868 367162530 367162690 6.310000e-50 209.0
25 TraesCS1A01G388000 chr1D 91.503 153 12 1 2708 2859 463344301 463344453 6.310000e-50 209.0
26 TraesCS1A01G388000 chr1D 85.841 113 16 0 3228 3340 464324914 464324802 3.040000e-23 121.0
27 TraesCS1A01G388000 chr1D 88.542 96 11 0 3165 3260 464324851 464324756 3.940000e-22 117.0
28 TraesCS1A01G388000 chr1D 89.552 67 6 1 5793 5858 464321752 464321686 3.990000e-12 84.2
29 TraesCS1A01G388000 chr2B 83.902 615 84 11 4005 4619 16236431 16235832 1.940000e-159 573.0
30 TraesCS1A01G388000 chr2B 95.000 40 2 0 5248 5287 40498634 40498673 5.200000e-06 63.9
31 TraesCS1A01G388000 chr2B 95.122 41 1 1 5248 5287 705379629 705379669 5.200000e-06 63.9
32 TraesCS1A01G388000 chr2D 94.000 150 8 1 2715 2863 490557582 490557433 6.270000e-55 226.0
33 TraesCS1A01G388000 chr2D 92.105 152 11 1 2709 2859 518183007 518183158 4.880000e-51 213.0
34 TraesCS1A01G388000 chr2D 89.130 92 7 3 2426 2514 99975753 99975844 1.830000e-20 111.0
35 TraesCS1A01G388000 chr2D 77.612 134 24 5 2229 2360 452855041 452854912 6.680000e-10 76.8
36 TraesCS1A01G388000 chr4D 92.208 154 10 2 2708 2859 447293814 447293661 3.770000e-52 217.0
37 TraesCS1A01G388000 chr4D 91.503 153 11 2 2712 2863 351463648 351463799 6.310000e-50 209.0
38 TraesCS1A01G388000 chr3D 91.195 159 12 2 2715 2872 488863574 488863417 1.360000e-51 215.0
39 TraesCS1A01G388000 chr5D 92.053 151 12 0 2709 2859 380078774 380078924 4.880000e-51 213.0
40 TraesCS1A01G388000 chr2A 93.671 79 5 0 2426 2504 606503483 606503405 1.090000e-22 119.0
41 TraesCS1A01G388000 chr5A 90.805 87 7 1 2423 2508 551738344 551738258 1.420000e-21 115.0
42 TraesCS1A01G388000 chr5A 86.957 69 9 0 2229 2297 699098000 699098068 1.860000e-10 78.7
43 TraesCS1A01G388000 chr3A 91.566 83 7 0 2426 2508 626884467 626884385 1.420000e-21 115.0
44 TraesCS1A01G388000 chr5B 91.358 81 7 0 2424 2504 579613489 579613569 1.830000e-20 111.0
45 TraesCS1A01G388000 chr5B 87.143 70 9 0 2228 2297 557281680 557281611 5.160000e-11 80.5
46 TraesCS1A01G388000 chr5B 100.000 39 0 0 5249 5287 146825604 146825642 8.640000e-09 73.1
47 TraesCS1A01G388000 chr7A 97.368 38 1 0 5250 5287 706669778 706669741 1.450000e-06 65.8
48 TraesCS1A01G388000 chr7A 91.489 47 1 3 5244 5287 286994640 286994594 1.870000e-05 62.1
49 TraesCS1A01G388000 chr4B 93.333 45 2 1 5244 5287 647306642 647306598 1.450000e-06 65.8
50 TraesCS1A01G388000 chr4B 95.000 40 2 0 5248 5287 665949498 665949459 5.200000e-06 63.9
51 TraesCS1A01G388000 chr6B 95.122 41 1 1 5248 5287 438408590 438408550 5.200000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G388000 chr1A 556795404 556801616 6212 True 2830.75 9699 92.92050 1 6213 4 chr1A.!!$R3 6212
1 TraesCS1A01G388000 chr1B 640557825 640564541 6716 True 937.00 3659 88.92050 6 6213 8 chr1B.!!$R1 6207
2 TraesCS1A01G388000 chr1D 464321382 464328012 6630 True 980.65 3585 89.37125 25 6213 8 chr1D.!!$R2 6188
3 TraesCS1A01G388000 chr2B 16235832 16236431 599 True 573.00 573 83.90200 4005 4619 1 chr2B.!!$R1 614

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
714 782 0.106967 GGATTTCTCTGCCCTCACCC 60.107 60.0 0.00 0.00 0.00 4.61 F
1894 2285 0.835971 TGAGGTGCACTTCCCAGCTA 60.836 55.0 24.44 3.47 40.75 3.32 F
2716 3111 0.104671 CAAAATGCTATTGGGGGCGG 59.895 55.0 0.00 0.00 0.00 6.13 F
2774 3169 0.250338 AGCCAACCCGAGTTTGAGTC 60.250 55.0 0.00 0.00 32.45 3.36 F
2853 3248 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.0 7.61 0.00 0.00 2.57 F
3993 4390 0.885196 TTTTTGCCGGGATACACTGC 59.115 50.0 2.18 0.00 39.74 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2697 3092 0.104671 CCGCCCCCAATAGCATTTTG 59.895 55.000 0.00 0.0 0.00 2.44 R
2755 3150 0.250338 GACTCAAACTCGGGTTGGCT 60.250 55.000 0.00 0.0 35.63 4.75 R
3980 4377 0.748005 CCCTTTGCAGTGTATCCCGG 60.748 60.000 0.00 0.0 0.00 5.73 R
4575 4973 1.333619 CATACCTTTGGCGGATTTCGG 59.666 52.381 0.00 0.0 39.69 4.30 R
4665 5066 2.910319 ACTAGACAGGGTTGCATTGGTA 59.090 45.455 0.00 0.0 0.00 3.25 R
5636 6318 0.172578 CGTGTATGAACGAGGCTGGA 59.827 55.000 2.65 0.0 46.49 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.597027 GACTGTGTGGTTCGTGGGG 60.597 63.158 0.00 0.00 0.00 4.96
49 50 0.395862 TTGGCAAAACGTCCTTGGGA 60.396 50.000 0.00 0.00 0.00 4.37
106 108 5.461737 CGAAGATTCAAAGGAGCAGATCTAC 59.538 44.000 0.00 0.00 0.00 2.59
113 115 7.667575 TCAAAGGAGCAGATCTACTTAATCT 57.332 36.000 0.00 0.00 45.20 2.40
114 116 8.083828 TCAAAGGAGCAGATCTACTTAATCTT 57.916 34.615 0.00 0.00 45.20 2.40
117 119 7.854166 AGGAGCAGATCTACTTAATCTTGAT 57.146 36.000 0.00 0.00 29.38 2.57
157 168 0.904649 ACGGCTCCAATGATGAGTGA 59.095 50.000 0.00 0.00 32.31 3.41
165 176 5.067413 GCTCCAATGATGAGTGATCAACATT 59.933 40.000 14.88 7.64 44.50 2.71
252 268 9.477484 GTAGTAATTGATATCCGGCCTAATATG 57.523 37.037 10.53 0.00 0.00 1.78
261 277 3.005050 TCCGGCCTAATATGAACGTGTAG 59.995 47.826 0.00 0.00 0.00 2.74
289 312 8.967664 AATTTACTCCCTAATATAAACGTGCA 57.032 30.769 0.00 0.00 0.00 4.57
318 343 1.140852 TGCCAGTATGAAATCGGAGGG 59.859 52.381 0.00 0.00 39.69 4.30
319 344 1.543429 GCCAGTATGAAATCGGAGGGG 60.543 57.143 0.00 0.00 39.69 4.79
320 345 2.047061 CCAGTATGAAATCGGAGGGGA 58.953 52.381 0.00 0.00 39.69 4.81
327 352 2.574369 TGAAATCGGAGGGGAAAGCTTA 59.426 45.455 0.00 0.00 0.00 3.09
336 361 5.204292 GGAGGGGAAAGCTTATTTTCTCAT 58.796 41.667 0.00 0.00 38.93 2.90
444 488 1.376037 CCAGGAGTGCGACCTTTCC 60.376 63.158 0.00 0.00 35.35 3.13
445 489 1.371183 CAGGAGTGCGACCTTTCCA 59.629 57.895 0.00 0.00 35.35 3.53
446 490 0.250295 CAGGAGTGCGACCTTTCCAA 60.250 55.000 0.00 0.00 35.35 3.53
449 493 1.886542 GGAGTGCGACCTTTCCAATTT 59.113 47.619 0.00 0.00 0.00 1.82
451 495 3.243737 GGAGTGCGACCTTTCCAATTTTT 60.244 43.478 0.00 0.00 0.00 1.94
489 538 9.408069 CTATAGGAACGTGACATTTTATACTCC 57.592 37.037 0.00 0.00 0.00 3.85
492 541 7.263496 AGGAACGTGACATTTTATACTCCTAC 58.737 38.462 0.00 0.00 0.00 3.18
493 542 7.123847 AGGAACGTGACATTTTATACTCCTACT 59.876 37.037 0.00 0.00 0.00 2.57
494 543 8.408601 GGAACGTGACATTTTATACTCCTACTA 58.591 37.037 0.00 0.00 0.00 1.82
495 544 9.230932 GAACGTGACATTTTATACTCCTACTAC 57.769 37.037 0.00 0.00 0.00 2.73
496 545 8.284945 ACGTGACATTTTATACTCCTACTACA 57.715 34.615 0.00 0.00 0.00 2.74
498 547 9.577110 CGTGACATTTTATACTCCTACTACAAA 57.423 33.333 0.00 0.00 0.00 2.83
526 588 2.465860 TATGTTGACCAGTTGACCCG 57.534 50.000 0.00 0.00 0.00 5.28
531 593 0.544357 TGACCAGTTGACCCGGAGAT 60.544 55.000 0.73 0.00 0.00 2.75
536 598 1.153349 GTTGACCCGGAGATCAGCC 60.153 63.158 0.73 0.00 0.00 4.85
564 626 3.753434 CACAGCCTCCGCGTCTCT 61.753 66.667 4.92 0.00 41.18 3.10
566 628 3.443925 CAGCCTCCGCGTCTCTCA 61.444 66.667 4.92 0.00 41.18 3.27
573 638 2.430921 CGCGTCTCTCACCACACC 60.431 66.667 0.00 0.00 0.00 4.16
712 780 2.725221 ATGGATTTCTCTGCCCTCAC 57.275 50.000 0.00 0.00 0.00 3.51
713 781 0.620556 TGGATTTCTCTGCCCTCACC 59.379 55.000 0.00 0.00 0.00 4.02
714 782 0.106967 GGATTTCTCTGCCCTCACCC 60.107 60.000 0.00 0.00 0.00 4.61
715 783 0.106967 GATTTCTCTGCCCTCACCCC 60.107 60.000 0.00 0.00 0.00 4.95
716 784 0.846427 ATTTCTCTGCCCTCACCCCA 60.846 55.000 0.00 0.00 0.00 4.96
717 785 1.492133 TTTCTCTGCCCTCACCCCAG 61.492 60.000 0.00 0.00 0.00 4.45
718 786 2.608988 CTCTGCCCTCACCCCAGT 60.609 66.667 0.00 0.00 0.00 4.00
719 787 2.607750 TCTGCCCTCACCCCAGTC 60.608 66.667 0.00 0.00 0.00 3.51
720 788 2.608988 CTGCCCTCACCCCAGTCT 60.609 66.667 0.00 0.00 0.00 3.24
721 789 2.930019 TGCCCTCACCCCAGTCTG 60.930 66.667 0.00 0.00 0.00 3.51
722 790 4.416738 GCCCTCACCCCAGTCTGC 62.417 72.222 0.00 0.00 0.00 4.26
723 791 3.721706 CCCTCACCCCAGTCTGCC 61.722 72.222 0.00 0.00 0.00 4.85
724 792 3.721706 CCTCACCCCAGTCTGCCC 61.722 72.222 0.00 0.00 0.00 5.36
725 793 3.721706 CTCACCCCAGTCTGCCCC 61.722 72.222 0.00 0.00 0.00 5.80
1026 1400 1.679898 CCACCCCTCCAAGTGAGTC 59.320 63.158 0.00 0.00 39.65 3.36
1279 1667 4.623167 GGTATAACATCATCGCACTAGCTG 59.377 45.833 0.00 0.00 39.10 4.24
1285 1673 4.338400 ACATCATCGCACTAGCTGTAGTTA 59.662 41.667 0.00 0.00 37.40 2.24
1288 1676 4.035324 TCATCGCACTAGCTGTAGTTAGTC 59.965 45.833 5.57 1.97 39.54 2.59
1426 1814 2.632541 GCTGCGCATCTGATCTGC 59.367 61.111 12.24 3.96 36.26 4.26
1436 1824 2.202919 TGATCTGCGTGCCGATGG 60.203 61.111 3.40 0.00 0.00 3.51
1442 1830 1.078778 TGCGTGCCGATGGTATGTT 60.079 52.632 0.00 0.00 0.00 2.71
1564 1954 2.224744 TGTGTGTTGGGTCATGTGCTAT 60.225 45.455 0.00 0.00 0.00 2.97
1582 1972 1.188863 ATCAAGGTCCCATTTGCTGC 58.811 50.000 0.00 0.00 0.00 5.25
1631 2022 5.827666 ACTGGTGAAACTGGTAATTTTTCG 58.172 37.500 0.00 0.00 36.74 3.46
1726 2117 7.827819 TTGATCTCTTTAGTTATGGTTGTCG 57.172 36.000 0.00 0.00 0.00 4.35
1734 2125 3.326747 AGTTATGGTTGTCGAGCAGTTC 58.673 45.455 0.00 0.00 39.48 3.01
1803 2194 5.830457 TGTTCAAATGAAATGTAGGGTGTCA 59.170 36.000 0.00 0.00 35.58 3.58
1807 2198 7.629157 TCAAATGAAATGTAGGGTGTCATAGA 58.371 34.615 0.00 0.00 0.00 1.98
1840 2231 6.734137 TCGTTCATTGTTAATTATCCCATGC 58.266 36.000 0.00 0.00 0.00 4.06
1855 2246 3.627577 TCCCATGCGCTTCTTAAATTCTC 59.372 43.478 9.73 0.00 0.00 2.87
1888 2279 2.014068 GCATACCTGAGGTGCACTTCC 61.014 57.143 24.44 10.94 38.68 3.46
1894 2285 0.835971 TGAGGTGCACTTCCCAGCTA 60.836 55.000 24.44 3.47 40.75 3.32
1913 2304 1.938585 ACAGGATTGTCTCCCTTCGA 58.061 50.000 0.00 0.00 46.27 3.71
1923 2314 4.856509 TGTCTCCCTTCGATCTCTCTTTA 58.143 43.478 0.00 0.00 0.00 1.85
2045 2436 3.257393 CACTATGACCTTGCTCTGTCAC 58.743 50.000 5.17 0.00 43.69 3.67
2062 2453 7.116090 GCTCTGTCACACTCATACAATCATATC 59.884 40.741 0.00 0.00 0.00 1.63
2193 2584 6.982141 GCATGAAATGGTGTTATTGATGACAT 59.018 34.615 0.00 0.00 46.86 3.06
2214 2605 9.605275 TGACATAATCTTATCTCTGTTGGAAAG 57.395 33.333 0.00 0.00 0.00 2.62
2215 2606 9.823647 GACATAATCTTATCTCTGTTGGAAAGA 57.176 33.333 0.00 0.00 0.00 2.52
2216 2607 9.606631 ACATAATCTTATCTCTGTTGGAAAGAC 57.393 33.333 0.00 0.00 0.00 3.01
2217 2608 9.605275 CATAATCTTATCTCTGTTGGAAAGACA 57.395 33.333 0.00 0.00 0.00 3.41
2218 2609 7.913674 AATCTTATCTCTGTTGGAAAGACAC 57.086 36.000 0.00 0.00 0.00 3.67
2219 2610 6.672266 TCTTATCTCTGTTGGAAAGACACT 57.328 37.500 0.00 0.00 0.00 3.55
2220 2611 7.067496 TCTTATCTCTGTTGGAAAGACACTT 57.933 36.000 0.00 0.00 0.00 3.16
2243 2638 2.178876 TTGTGCTTAGGCGCTAGGCA 62.179 55.000 15.84 15.84 44.59 4.75
2341 2736 6.746329 AGAATTCATTCCATGTCACAGTGACT 60.746 38.462 29.66 15.44 41.41 3.41
2419 2814 9.603921 CCCATTTTCATGCTCTAAATTAATGTT 57.396 29.630 0.00 0.00 0.00 2.71
2481 2876 2.513897 GCCAACCGCCTCGCTTAT 60.514 61.111 0.00 0.00 0.00 1.73
2548 2943 1.630369 TCTGGCTGGTTCATAGTTGCT 59.370 47.619 0.00 0.00 0.00 3.91
2579 2974 6.372659 TCTGCCATTGTTCTTCTTCTGTATTC 59.627 38.462 0.00 0.00 0.00 1.75
2632 3027 6.260936 GCCCATTGTTTCCATATATAGGATCG 59.739 42.308 0.00 0.00 34.56 3.69
2687 3082 6.147437 TCCAACAAAATCCTACTGGGTTAT 57.853 37.500 0.00 0.00 35.16 1.89
2688 3083 7.273457 TCCAACAAAATCCTACTGGGTTATA 57.727 36.000 0.00 0.00 35.16 0.98
2689 3084 7.700846 TCCAACAAAATCCTACTGGGTTATAA 58.299 34.615 0.00 0.00 35.16 0.98
2690 3085 8.171400 TCCAACAAAATCCTACTGGGTTATAAA 58.829 33.333 0.00 0.00 35.16 1.40
2691 3086 8.808092 CCAACAAAATCCTACTGGGTTATAAAA 58.192 33.333 0.00 0.00 35.16 1.52
2694 3089 9.762381 ACAAAATCCTACTGGGTTATAAAATGA 57.238 29.630 0.00 0.00 35.16 2.57
2697 3092 9.628500 AAATCCTACTGGGTTATAAAATGAGAC 57.372 33.333 0.00 0.00 35.16 3.36
2698 3093 7.743116 TCCTACTGGGTTATAAAATGAGACA 57.257 36.000 0.00 0.00 36.25 3.41
2699 3094 8.153221 TCCTACTGGGTTATAAAATGAGACAA 57.847 34.615 0.00 0.00 36.25 3.18
2700 3095 8.607713 TCCTACTGGGTTATAAAATGAGACAAA 58.392 33.333 0.00 0.00 36.25 2.83
2701 3096 9.238368 CCTACTGGGTTATAAAATGAGACAAAA 57.762 33.333 0.00 0.00 0.00 2.44
2704 3099 8.034804 ACTGGGTTATAAAATGAGACAAAATGC 58.965 33.333 0.00 0.00 0.00 3.56
2705 3100 8.133024 TGGGTTATAAAATGAGACAAAATGCT 57.867 30.769 0.00 0.00 0.00 3.79
2706 3101 9.249053 TGGGTTATAAAATGAGACAAAATGCTA 57.751 29.630 0.00 0.00 0.00 3.49
2712 3107 5.603170 AATGAGACAAAATGCTATTGGGG 57.397 39.130 0.00 0.00 32.02 4.96
2713 3108 3.364549 TGAGACAAAATGCTATTGGGGG 58.635 45.455 0.00 0.00 32.02 5.40
2714 3109 2.101415 GAGACAAAATGCTATTGGGGGC 59.899 50.000 0.00 0.00 32.02 5.80
2715 3110 0.823460 ACAAAATGCTATTGGGGGCG 59.177 50.000 0.00 0.00 32.02 6.13
2716 3111 0.104671 CAAAATGCTATTGGGGGCGG 59.895 55.000 0.00 0.00 0.00 6.13
2717 3112 1.048160 AAAATGCTATTGGGGGCGGG 61.048 55.000 0.00 0.00 0.00 6.13
2718 3113 2.945178 AAATGCTATTGGGGGCGGGG 62.945 60.000 0.00 0.00 0.00 5.73
2756 3151 4.673375 AGCTGGGGTTGCTGCCAG 62.673 66.667 0.00 0.00 39.56 4.85
2761 3156 3.994853 GGGTTGCTGCCAGCCAAC 61.995 66.667 15.29 16.96 43.50 3.77
2762 3157 3.994853 GGTTGCTGCCAGCCAACC 61.995 66.667 24.88 24.88 41.51 3.77
2763 3158 3.994853 GTTGCTGCCAGCCAACCC 61.995 66.667 15.29 0.00 41.51 4.11
2767 3162 4.335647 CTGCCAGCCAACCCGAGT 62.336 66.667 0.00 0.00 0.00 4.18
2768 3163 3.850098 CTGCCAGCCAACCCGAGTT 62.850 63.158 0.00 0.00 36.33 3.01
2769 3164 2.597510 GCCAGCCAACCCGAGTTT 60.598 61.111 0.00 0.00 32.45 2.66
2770 3165 2.919494 GCCAGCCAACCCGAGTTTG 61.919 63.158 0.00 0.00 32.45 2.93
2771 3166 1.228124 CCAGCCAACCCGAGTTTGA 60.228 57.895 0.00 0.00 32.45 2.69
2772 3167 1.237285 CCAGCCAACCCGAGTTTGAG 61.237 60.000 0.00 0.00 32.45 3.02
2773 3168 0.535102 CAGCCAACCCGAGTTTGAGT 60.535 55.000 0.00 0.00 32.45 3.41
2774 3169 0.250338 AGCCAACCCGAGTTTGAGTC 60.250 55.000 0.00 0.00 32.45 3.36
2775 3170 1.235281 GCCAACCCGAGTTTGAGTCC 61.235 60.000 0.00 0.00 32.45 3.85
2776 3171 0.396811 CCAACCCGAGTTTGAGTCCT 59.603 55.000 0.00 0.00 32.45 3.85
2777 3172 1.512926 CAACCCGAGTTTGAGTCCTG 58.487 55.000 0.00 0.00 32.45 3.86
2778 3173 0.396811 AACCCGAGTTTGAGTCCTGG 59.603 55.000 0.00 0.00 29.61 4.45
2779 3174 1.376037 CCCGAGTTTGAGTCCTGGC 60.376 63.158 0.00 0.00 0.00 4.85
2780 3175 1.674057 CCGAGTTTGAGTCCTGGCT 59.326 57.895 0.00 0.00 0.00 4.75
2781 3176 0.390472 CCGAGTTTGAGTCCTGGCTC 60.390 60.000 10.12 10.12 36.12 4.70
2782 3177 0.734253 CGAGTTTGAGTCCTGGCTCG 60.734 60.000 11.67 8.02 39.50 5.03
2783 3178 0.390472 GAGTTTGAGTCCTGGCTCGG 60.390 60.000 11.67 0.00 38.28 4.63
2784 3179 0.832135 AGTTTGAGTCCTGGCTCGGA 60.832 55.000 11.67 0.00 38.28 4.55
2804 3199 2.049433 CGCGGTTCTCACGGAGTT 60.049 61.111 0.00 0.00 41.61 3.01
2805 3200 1.663702 CGCGGTTCTCACGGAGTTT 60.664 57.895 0.00 0.00 41.61 2.66
2806 3201 1.615107 CGCGGTTCTCACGGAGTTTC 61.615 60.000 0.00 0.00 41.61 2.78
2807 3202 0.319641 GCGGTTCTCACGGAGTTTCT 60.320 55.000 0.00 0.00 41.61 2.52
2808 3203 1.699343 CGGTTCTCACGGAGTTTCTC 58.301 55.000 0.00 0.00 41.61 2.87
2809 3204 1.669211 CGGTTCTCACGGAGTTTCTCC 60.669 57.143 5.79 5.79 46.44 3.71
2823 3218 7.404671 GGAGTTTCTCCTATAAAAATTGCCA 57.595 36.000 8.38 0.00 46.41 4.92
2824 3219 7.836842 GGAGTTTCTCCTATAAAAATTGCCAA 58.163 34.615 8.38 0.00 46.41 4.52
2825 3220 7.759886 GGAGTTTCTCCTATAAAAATTGCCAAC 59.240 37.037 8.38 0.00 46.41 3.77
2826 3221 7.312899 AGTTTCTCCTATAAAAATTGCCAACG 58.687 34.615 0.00 0.00 0.00 4.10
2827 3222 7.175990 AGTTTCTCCTATAAAAATTGCCAACGA 59.824 33.333 0.00 0.00 0.00 3.85
2828 3223 6.677781 TCTCCTATAAAAATTGCCAACGAG 57.322 37.500 0.00 0.00 0.00 4.18
2829 3224 5.588648 TCTCCTATAAAAATTGCCAACGAGG 59.411 40.000 0.00 0.00 41.84 4.63
2830 3225 4.642885 TCCTATAAAAATTGCCAACGAGGG 59.357 41.667 0.00 0.00 38.09 4.30
2831 3226 4.401202 CCTATAAAAATTGCCAACGAGGGT 59.599 41.667 0.00 0.00 38.09 4.34
2832 3227 4.882842 ATAAAAATTGCCAACGAGGGTT 57.117 36.364 0.00 0.00 38.09 4.11
2833 3228 5.986501 ATAAAAATTGCCAACGAGGGTTA 57.013 34.783 0.00 0.00 38.09 2.85
2834 3229 3.934457 AAAATTGCCAACGAGGGTTAG 57.066 42.857 0.00 0.00 38.09 2.34
2835 3230 1.173913 AATTGCCAACGAGGGTTAGC 58.826 50.000 0.00 0.00 40.57 3.09
2836 3231 0.679960 ATTGCCAACGAGGGTTAGCC 60.680 55.000 0.00 0.00 39.61 3.93
2846 3241 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
2847 3242 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
2848 3243 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
2849 3244 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
2850 3245 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
2851 3246 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
2852 3247 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
2853 3248 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
2854 3249 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
2855 3250 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
2856 3251 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
2940 3335 4.070009 GGAATTAACAGGTTGTTCCTCGT 58.930 43.478 17.04 0.00 46.24 4.18
3079 3474 4.846940 AGGTAAACCCTCTCATGTCTTTCT 59.153 41.667 0.00 0.00 40.71 2.52
3114 3509 1.902508 TGTTTGCCTACTCCTCTCTGG 59.097 52.381 0.00 0.00 37.10 3.86
3324 3719 6.062095 ACACCTATTTTTCAAGCAGTACTGT 58.938 36.000 23.44 8.30 0.00 3.55
3394 3789 7.586349 ACCATGATTATGATGACTACCCTTTT 58.414 34.615 0.00 0.00 36.36 2.27
3436 3831 6.169094 TGAAGACTTTGCTTATGAGGAAGAG 58.831 40.000 0.00 0.00 34.53 2.85
3606 4001 4.898014 ATTCCAAACCCATCCCAATCTA 57.102 40.909 0.00 0.00 0.00 1.98
3607 4002 4.898014 TTCCAAACCCATCCCAATCTAT 57.102 40.909 0.00 0.00 0.00 1.98
3669 4064 7.490840 CAATTTGATACTGTTGATGGCCATAA 58.509 34.615 20.84 9.02 0.00 1.90
3944 4340 6.765036 CCAATCAGTATCTTGCTGTCATTAGT 59.235 38.462 0.00 0.00 35.60 2.24
3971 4367 2.996249 TCTCCTTGTGATGAGATGCC 57.004 50.000 0.00 0.00 32.84 4.40
3993 4390 0.885196 TTTTTGCCGGGATACACTGC 59.115 50.000 2.18 0.00 39.74 4.40
4126 4523 2.014068 GCAGGCACTCCTTACCATGAC 61.014 57.143 0.00 0.00 41.93 3.06
4218 4615 7.987458 TGGACTTTATCTCCATTAATGACTGTC 59.013 37.037 17.23 11.54 32.52 3.51
4253 4650 4.853924 AGTTTGCCCTTAGTCACATTTG 57.146 40.909 0.00 0.00 0.00 2.32
4502 4900 4.606457 CTAATTCAGCTAACACACCTGC 57.394 45.455 0.00 0.00 0.00 4.85
4539 4937 6.839124 TCCCTAACTTATAACGAAGACACA 57.161 37.500 0.00 0.00 0.00 3.72
4575 4973 3.799420 GCAGGACGATGTTGTATTCTCTC 59.201 47.826 0.00 0.00 0.00 3.20
4584 4982 4.430007 TGTTGTATTCTCTCCGAAATCCG 58.570 43.478 0.00 0.00 34.79 4.18
4628 5026 7.254590 CCTCTGCTTATCATAGTTACTGCAAAC 60.255 40.741 0.00 0.00 0.00 2.93
4723 5124 4.811024 GGATTGCGATAGATCTGTTGACAA 59.189 41.667 10.75 12.94 39.76 3.18
4725 5126 3.521560 TGCGATAGATCTGTTGACAACC 58.478 45.455 15.59 0.22 39.76 3.77
4779 5192 6.453943 AGCTGCTGTCATGTTCATATACTAG 58.546 40.000 0.00 0.00 0.00 2.57
4838 5275 4.729868 ACCTGTTATGCTGAAACCTCTTT 58.270 39.130 0.00 0.00 0.00 2.52
4864 5301 6.478673 TGTGTATTTGTTCATATACTGCCTCG 59.521 38.462 12.10 0.00 0.00 4.63
4877 5336 2.766263 ACTGCCTCGAATCTAATGTGGA 59.234 45.455 0.00 0.00 0.00 4.02
4878 5337 3.126831 CTGCCTCGAATCTAATGTGGAC 58.873 50.000 0.00 0.00 0.00 4.02
4880 5339 3.958147 TGCCTCGAATCTAATGTGGACTA 59.042 43.478 0.00 0.00 0.00 2.59
4915 5374 2.094545 GCATTTTGAGGATTTCGTGGCT 60.095 45.455 0.00 0.00 0.00 4.75
5214 5673 3.173965 ACACCACACTGAGGCTATAAGT 58.826 45.455 0.00 0.00 0.00 2.24
5246 5710 3.130160 GAGCCGAGCCAAGCCAAG 61.130 66.667 0.00 0.00 0.00 3.61
5252 5716 1.747774 GAGCCAAGCCAAGCCAAAA 59.252 52.632 0.00 0.00 0.00 2.44
5253 5717 0.322648 GAGCCAAGCCAAGCCAAAAT 59.677 50.000 0.00 0.00 0.00 1.82
5254 5718 0.035739 AGCCAAGCCAAGCCAAAATG 59.964 50.000 0.00 0.00 0.00 2.32
5255 5719 0.956902 GCCAAGCCAAGCCAAAATGG 60.957 55.000 0.00 0.00 41.55 3.16
5257 5721 1.622811 CCAAGCCAAGCCAAAATGGTA 59.377 47.619 0.00 0.00 40.46 3.25
5258 5722 2.612721 CCAAGCCAAGCCAAAATGGTAC 60.613 50.000 0.00 0.00 40.46 3.34
5259 5723 2.299867 CAAGCCAAGCCAAAATGGTACT 59.700 45.455 0.00 0.00 40.46 2.73
5260 5724 3.449746 AGCCAAGCCAAAATGGTACTA 57.550 42.857 0.00 0.00 40.46 1.82
5263 5727 3.697166 CCAAGCCAAAATGGTACTACCT 58.303 45.455 6.79 0.00 40.46 3.08
5264 5728 3.694566 CCAAGCCAAAATGGTACTACCTC 59.305 47.826 6.79 0.00 40.46 3.85
5265 5729 3.646736 AGCCAAAATGGTACTACCTCC 57.353 47.619 6.79 0.00 40.46 4.30
5267 5731 2.355412 GCCAAAATGGTACTACCTCCGT 60.355 50.000 6.79 0.00 40.46 4.69
5268 5732 3.528532 CCAAAATGGTACTACCTCCGTC 58.471 50.000 6.79 0.00 39.58 4.79
5269 5733 3.528532 CAAAATGGTACTACCTCCGTCC 58.471 50.000 6.79 0.00 39.58 4.79
5272 5736 2.556840 TGGTACTACCTCCGTCCCGG 62.557 65.000 6.79 0.00 41.75 5.73
5282 5746 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
5283 5747 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
5284 5748 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
5285 5749 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
5286 5750 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
5287 5751 3.181484 CGTCCCGGTGTATAAGTCATTCA 60.181 47.826 0.00 0.00 0.00 2.57
5288 5752 4.117685 GTCCCGGTGTATAAGTCATTCAC 58.882 47.826 0.00 0.00 34.95 3.18
5289 5753 4.028131 TCCCGGTGTATAAGTCATTCACT 58.972 43.478 0.00 0.00 35.76 3.41
5291 5755 4.570772 CCCGGTGTATAAGTCATTCACTTG 59.429 45.833 0.00 0.00 45.60 3.16
5292 5756 5.175859 CCGGTGTATAAGTCATTCACTTGT 58.824 41.667 0.00 0.00 45.60 3.16
5328 6001 2.154567 ATGTCACCGTCCTAGGCTTA 57.845 50.000 2.96 0.00 33.69 3.09
5330 6003 2.463752 TGTCACCGTCCTAGGCTTAAT 58.536 47.619 2.96 0.00 33.69 1.40
5331 6004 3.634504 TGTCACCGTCCTAGGCTTAATA 58.365 45.455 2.96 0.00 33.69 0.98
5332 6005 4.220724 TGTCACCGTCCTAGGCTTAATAT 58.779 43.478 2.96 0.00 33.69 1.28
5333 6006 5.387788 TGTCACCGTCCTAGGCTTAATATA 58.612 41.667 2.96 0.00 33.69 0.86
5334 6007 6.014647 TGTCACCGTCCTAGGCTTAATATAT 58.985 40.000 2.96 0.00 33.69 0.86
5335 6008 7.177184 TGTCACCGTCCTAGGCTTAATATATA 58.823 38.462 2.96 0.00 33.69 0.86
5336 6009 7.837689 TGTCACCGTCCTAGGCTTAATATATAT 59.162 37.037 2.96 0.00 33.69 0.86
5337 6010 8.351461 GTCACCGTCCTAGGCTTAATATATATC 58.649 40.741 2.96 0.00 33.69 1.63
5367 6040 0.668401 GTTTGTGAGCATGCCCTTGC 60.668 55.000 15.66 1.12 43.09 4.01
5413 6089 0.878086 GCTCAGGCTATTCTCGGTGC 60.878 60.000 0.00 0.00 35.22 5.01
5437 6119 7.391275 TGCTTGTTGAATCTGTCTTGATATTCA 59.609 33.333 0.00 0.00 36.75 2.57
5451 6133 3.382227 TGATATTCATTGGCTGGCTGTTG 59.618 43.478 2.00 0.00 0.00 3.33
5455 6137 1.973281 ATTGGCTGGCTGTTGTCGG 60.973 57.895 2.00 0.00 0.00 4.79
5567 6249 0.317160 GGCTTTACTGCCGCCTTTTT 59.683 50.000 0.00 0.00 43.74 1.94
5568 6250 1.668919 GGCTTTACTGCCGCCTTTTTC 60.669 52.381 0.00 0.00 43.74 2.29
5570 6252 2.288213 GCTTTACTGCCGCCTTTTTCTT 60.288 45.455 0.00 0.00 0.00 2.52
5572 6254 1.243902 TACTGCCGCCTTTTTCTTGG 58.756 50.000 0.00 0.00 0.00 3.61
5573 6255 0.467290 ACTGCCGCCTTTTTCTTGGA 60.467 50.000 0.00 0.00 0.00 3.53
5575 6257 1.273327 CTGCCGCCTTTTTCTTGGATT 59.727 47.619 0.00 0.00 0.00 3.01
5576 6258 1.272212 TGCCGCCTTTTTCTTGGATTC 59.728 47.619 0.00 0.00 0.00 2.52
5578 6260 2.672195 GCCGCCTTTTTCTTGGATTCAG 60.672 50.000 0.00 0.00 0.00 3.02
5579 6261 2.558359 CCGCCTTTTTCTTGGATTCAGT 59.442 45.455 0.00 0.00 0.00 3.41
5580 6262 3.568538 CGCCTTTTTCTTGGATTCAGTG 58.431 45.455 0.00 0.00 0.00 3.66
5581 6263 3.320626 GCCTTTTTCTTGGATTCAGTGC 58.679 45.455 0.00 0.00 0.00 4.40
5582 6264 3.006217 GCCTTTTTCTTGGATTCAGTGCT 59.994 43.478 0.00 0.00 0.00 4.40
5583 6265 4.553323 CCTTTTTCTTGGATTCAGTGCTG 58.447 43.478 0.00 0.00 0.00 4.41
5584 6266 3.648339 TTTTCTTGGATTCAGTGCTGC 57.352 42.857 0.00 0.00 0.00 5.25
5585 6267 1.538047 TTCTTGGATTCAGTGCTGCC 58.462 50.000 0.00 0.00 0.00 4.85
5586 6268 0.694771 TCTTGGATTCAGTGCTGCCT 59.305 50.000 0.00 0.00 0.00 4.75
5587 6269 0.809385 CTTGGATTCAGTGCTGCCTG 59.191 55.000 10.65 10.65 0.00 4.85
5588 6270 0.609957 TTGGATTCAGTGCTGCCTGG 60.610 55.000 15.08 0.00 33.14 4.45
5589 6271 2.413142 GGATTCAGTGCTGCCTGGC 61.413 63.158 12.87 12.87 33.14 4.85
5590 6272 1.676635 GATTCAGTGCTGCCTGGCA 60.677 57.895 21.96 21.96 40.15 4.92
5591 6273 1.000019 ATTCAGTGCTGCCTGGCAT 60.000 52.632 23.64 3.86 44.34 4.40
5592 6274 1.035932 ATTCAGTGCTGCCTGGCATC 61.036 55.000 23.64 19.19 44.34 3.91
5595 6277 3.503363 GTGCTGCCTGGCATCGTC 61.503 66.667 23.64 11.41 44.34 4.20
5597 6279 4.783621 GCTGCCTGGCATCGTCCA 62.784 66.667 23.64 0.00 38.13 4.02
5618 6300 1.996191 GACGGCTCATCACTTCTCAAC 59.004 52.381 0.00 0.00 0.00 3.18
5623 6305 3.370315 GGCTCATCACTTCTCAACCAGAT 60.370 47.826 0.00 0.00 0.00 2.90
5624 6306 4.260170 GCTCATCACTTCTCAACCAGATT 58.740 43.478 0.00 0.00 0.00 2.40
5625 6307 4.699257 GCTCATCACTTCTCAACCAGATTT 59.301 41.667 0.00 0.00 0.00 2.17
5626 6308 5.182760 GCTCATCACTTCTCAACCAGATTTT 59.817 40.000 0.00 0.00 0.00 1.82
5627 6309 6.294397 GCTCATCACTTCTCAACCAGATTTTT 60.294 38.462 0.00 0.00 0.00 1.94
5628 6310 7.206981 TCATCACTTCTCAACCAGATTTTTC 57.793 36.000 0.00 0.00 0.00 2.29
5629 6311 7.000472 TCATCACTTCTCAACCAGATTTTTCT 59.000 34.615 0.00 0.00 0.00 2.52
5630 6312 6.867662 TCACTTCTCAACCAGATTTTTCTC 57.132 37.500 0.00 0.00 0.00 2.87
5631 6313 6.356556 TCACTTCTCAACCAGATTTTTCTCA 58.643 36.000 0.00 0.00 0.00 3.27
5632 6314 6.828273 TCACTTCTCAACCAGATTTTTCTCAA 59.172 34.615 0.00 0.00 0.00 3.02
5633 6315 6.914757 CACTTCTCAACCAGATTTTTCTCAAC 59.085 38.462 0.00 0.00 0.00 3.18
5634 6316 6.603201 ACTTCTCAACCAGATTTTTCTCAACA 59.397 34.615 0.00 0.00 0.00 3.33
5635 6317 7.122650 ACTTCTCAACCAGATTTTTCTCAACAA 59.877 33.333 0.00 0.00 0.00 2.83
5636 6318 7.587037 TCTCAACCAGATTTTTCTCAACAAT 57.413 32.000 0.00 0.00 0.00 2.71
5647 6329 1.347707 TCTCAACAATCCAGCCTCGTT 59.652 47.619 0.00 0.00 0.00 3.85
5682 6364 7.496591 AGTTATTATTATTTCTTCCCACGCGAA 59.503 33.333 15.93 0.00 0.00 4.70
5685 6367 1.439679 ATTTCTTCCCACGCGAAGAC 58.560 50.000 15.93 0.00 46.10 3.01
5705 6387 5.848406 AGACAACTGAAGAGAAGAAATCGT 58.152 37.500 0.00 0.00 0.00 3.73
5706 6388 5.694006 AGACAACTGAAGAGAAGAAATCGTG 59.306 40.000 0.00 0.00 0.00 4.35
5707 6389 5.601662 ACAACTGAAGAGAAGAAATCGTGA 58.398 37.500 0.00 0.00 0.00 4.35
5708 6390 5.463724 ACAACTGAAGAGAAGAAATCGTGAC 59.536 40.000 0.00 0.00 0.00 3.67
5709 6391 4.230657 ACTGAAGAGAAGAAATCGTGACG 58.769 43.478 0.00 0.00 0.00 4.35
5733 6415 2.151202 CCTCTTTTTACGGCAGCTGAA 58.849 47.619 20.43 0.00 0.00 3.02
5737 6419 3.687698 TCTTTTTACGGCAGCTGAATACC 59.312 43.478 20.43 8.07 0.00 2.73
5741 6423 1.264749 ACGGCAGCTGAATACCTGGA 61.265 55.000 20.43 0.00 0.00 3.86
5743 6425 1.602311 GGCAGCTGAATACCTGGATG 58.398 55.000 20.43 0.00 0.00 3.51
5768 6495 1.834822 GGCAGGATAGGAGCCTCGT 60.835 63.158 0.00 0.00 44.92 4.18
5775 6502 4.221703 CAGGATAGGAGCCTCGTTATCATT 59.778 45.833 13.54 3.06 32.12 2.57
5776 6503 4.841246 AGGATAGGAGCCTCGTTATCATTT 59.159 41.667 13.54 1.32 0.00 2.32
5777 6504 5.308237 AGGATAGGAGCCTCGTTATCATTTT 59.692 40.000 13.54 0.00 0.00 1.82
5778 6505 5.998363 GGATAGGAGCCTCGTTATCATTTTT 59.002 40.000 13.54 0.00 0.00 1.94
5858 7361 2.053747 TTCCCCATCTACCACCACTT 57.946 50.000 0.00 0.00 0.00 3.16
5859 7362 2.053747 TCCCCATCTACCACCACTTT 57.946 50.000 0.00 0.00 0.00 2.66
5860 7363 2.354328 TCCCCATCTACCACCACTTTT 58.646 47.619 0.00 0.00 0.00 2.27
5861 7364 2.719705 TCCCCATCTACCACCACTTTTT 59.280 45.455 0.00 0.00 0.00 1.94
5894 7397 3.713826 TTGAAAGTCCCATCTACCACC 57.286 47.619 0.00 0.00 0.00 4.61
5895 7398 2.626785 TGAAAGTCCCATCTACCACCA 58.373 47.619 0.00 0.00 0.00 4.17
5896 7399 2.304761 TGAAAGTCCCATCTACCACCAC 59.695 50.000 0.00 0.00 0.00 4.16
5897 7400 2.344093 AAGTCCCATCTACCACCACT 57.656 50.000 0.00 0.00 0.00 4.00
5984 7487 2.002586 CACTTCCATCTACACCAAGCG 58.997 52.381 0.00 0.00 0.00 4.68
5985 7488 1.066143 ACTTCCATCTACACCAAGCGG 60.066 52.381 0.00 0.00 38.77 5.52
5988 7491 1.622607 CCATCTACACCAAGCGGGGA 61.623 60.000 3.55 0.00 38.36 4.81
5989 7492 0.179073 CATCTACACCAAGCGGGGAG 60.179 60.000 3.55 0.00 38.36 4.30
5990 7493 1.338136 ATCTACACCAAGCGGGGAGG 61.338 60.000 3.55 0.00 38.36 4.30
5991 7494 3.006728 TACACCAAGCGGGGAGGG 61.007 66.667 3.55 0.00 38.36 4.30
5994 7497 4.760220 ACCAAGCGGGGAGGGGAT 62.760 66.667 3.55 0.00 42.91 3.85
6021 7524 1.346068 GGAAGGAGATCTCAATCCCCG 59.654 57.143 25.14 0.00 35.02 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.600255 CCCACGAACCACACAGTCTC 60.600 60.000 0.00 0.00 0.00 3.36
1 2 1.445942 CCCACGAACCACACAGTCT 59.554 57.895 0.00 0.00 0.00 3.24
2 3 1.597027 CCCCACGAACCACACAGTC 60.597 63.158 0.00 0.00 0.00 3.51
3 4 2.040009 CTCCCCACGAACCACACAGT 62.040 60.000 0.00 0.00 0.00 3.55
4 5 1.301716 CTCCCCACGAACCACACAG 60.302 63.158 0.00 0.00 0.00 3.66
13 14 1.540367 AATGAACCCCTCCCCACGA 60.540 57.895 0.00 0.00 0.00 4.35
16 17 2.929964 GCCAATGAACCCCTCCCCA 61.930 63.158 0.00 0.00 0.00 4.96
20 21 1.336795 CGTTTTGCCAATGAACCCCTC 60.337 52.381 0.00 0.00 0.00 4.30
49 50 5.245531 TGAAATCTTATCTGACTGGCGTTT 58.754 37.500 0.00 0.00 0.00 3.60
89 91 7.667575 AGATTAAGTAGATCTGCTCCTTTGA 57.332 36.000 14.15 0.00 32.79 2.69
113 115 7.706100 TGGATTGACAAGATTTGATGATCAA 57.294 32.000 3.29 3.29 34.03 2.57
114 116 7.541162 GTTGGATTGACAAGATTTGATGATCA 58.459 34.615 0.00 0.00 0.00 2.92
117 119 5.106197 CCGTTGGATTGACAAGATTTGATGA 60.106 40.000 0.00 0.00 0.00 2.92
185 196 8.932434 TTGGCATGGAGTTTATATTTAGCATA 57.068 30.769 0.00 0.00 0.00 3.14
242 258 7.958053 ATTAACTACACGTTCATATTAGGCC 57.042 36.000 0.00 0.00 37.05 5.19
252 268 8.986477 TTAGGGAGTAAATTAACTACACGTTC 57.014 34.615 0.00 0.00 37.05 3.95
289 312 6.238731 CCGATTTCATACTGGCAAATGTGTAT 60.239 38.462 8.78 0.90 0.00 2.29
298 321 1.140852 CCCTCCGATTTCATACTGGCA 59.859 52.381 0.00 0.00 0.00 4.92
299 322 1.543429 CCCCTCCGATTTCATACTGGC 60.543 57.143 0.00 0.00 0.00 4.85
392 426 1.264749 TTGAGCTACGCATGGGGAGT 61.265 55.000 22.02 9.89 0.00 3.85
396 430 2.224042 TGTATCTTGAGCTACGCATGGG 60.224 50.000 8.44 8.44 0.00 4.00
449 493 7.820872 CACGTTCCTATAGAAAGTAGGGAAAAA 59.179 37.037 0.00 0.00 44.13 1.94
451 495 6.664816 TCACGTTCCTATAGAAAGTAGGGAAA 59.335 38.462 0.00 0.00 44.13 3.13
454 498 5.359009 TGTCACGTTCCTATAGAAAGTAGGG 59.641 44.000 0.00 0.00 44.13 3.53
455 499 6.446781 TGTCACGTTCCTATAGAAAGTAGG 57.553 41.667 0.00 0.00 44.13 3.18
502 551 5.588648 CGGGTCAACTGGTCAACATATTTAT 59.411 40.000 0.00 0.00 0.00 1.40
564 626 2.692741 TGTGGGTGGGTGTGGTGA 60.693 61.111 0.00 0.00 0.00 4.02
566 628 3.498071 CCTGTGGGTGGGTGTGGT 61.498 66.667 0.00 0.00 0.00 4.16
695 763 0.106967 GGGTGAGGGCAGAGAAATCC 60.107 60.000 0.00 0.00 0.00 3.01
1098 1483 0.180406 GAAATCAGCCTTAGCCGGGA 59.820 55.000 2.18 0.00 41.25 5.14
1100 1485 1.160329 CCGAAATCAGCCTTAGCCGG 61.160 60.000 0.00 0.00 41.25 6.13
1279 1667 4.430908 CCCTGATTCCAACGACTAACTAC 58.569 47.826 0.00 0.00 0.00 2.73
1285 1673 1.299976 GCCCCTGATTCCAACGACT 59.700 57.895 0.00 0.00 0.00 4.18
1288 1676 2.824041 CGGCCCCTGATTCCAACG 60.824 66.667 0.00 0.00 0.00 4.10
1436 1824 9.546909 CATCTATTTCAGAACACAACAACATAC 57.453 33.333 0.00 0.00 36.67 2.39
1442 1830 5.048782 GCACCATCTATTTCAGAACACAACA 60.049 40.000 0.00 0.00 36.67 3.33
1481 1869 6.418819 CACAAACAAGATAAAAGACCAGCAAG 59.581 38.462 0.00 0.00 0.00 4.01
1536 1926 4.646945 ACATGACCCAACACACAAACATTA 59.353 37.500 0.00 0.00 0.00 1.90
1564 1954 0.899717 GGCAGCAAATGGGACCTTGA 60.900 55.000 0.00 0.00 0.00 3.02
1582 1972 0.684153 ACCGCAATTCCCCATTCAGG 60.684 55.000 0.00 0.00 37.03 3.86
1631 2022 3.058224 AGCTAAACAAGACAATCAACCGC 60.058 43.478 0.00 0.00 0.00 5.68
1726 2117 0.329596 AATCCCCACCTGAACTGCTC 59.670 55.000 0.00 0.00 0.00 4.26
1734 2125 0.405585 ACCAACTCAATCCCCACCTG 59.594 55.000 0.00 0.00 0.00 4.00
1784 2175 7.554118 CAGTCTATGACACCCTACATTTCATTT 59.446 37.037 0.46 0.00 34.60 2.32
1803 2194 5.858381 ACAATGAACGATATGCCAGTCTAT 58.142 37.500 0.00 0.00 0.00 1.98
1807 2198 6.942532 ATTAACAATGAACGATATGCCAGT 57.057 33.333 0.00 0.00 0.00 4.00
1840 2231 7.769272 AAGAGATCAGAGAATTTAAGAAGCG 57.231 36.000 0.00 0.00 0.00 4.68
1855 2246 4.763073 TCAGGTATGCACAAAGAGATCAG 58.237 43.478 0.00 0.00 0.00 2.90
1888 2279 2.611225 GGAGACAATCCTGTAGCTGG 57.389 55.000 0.00 0.00 45.64 4.85
1940 2331 5.895636 AAGTGCGAACATGATCCAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
2074 2465 8.472413 AGTATGTCAAAGCAATAGCATTTCATT 58.528 29.630 0.00 0.00 45.49 2.57
2193 2584 8.816894 AGTGTCTTTCCAACAGAGATAAGATTA 58.183 33.333 0.00 0.00 0.00 1.75
2214 2605 1.880027 CCTAAGCACAACCCAAGTGTC 59.120 52.381 0.00 0.00 39.17 3.67
2215 2606 1.981256 CCTAAGCACAACCCAAGTGT 58.019 50.000 0.00 0.00 39.17 3.55
2216 2607 0.598065 GCCTAAGCACAACCCAAGTG 59.402 55.000 0.00 0.00 39.53 3.16
2217 2608 0.889186 CGCCTAAGCACAACCCAAGT 60.889 55.000 0.00 0.00 39.83 3.16
2218 2609 1.875963 CGCCTAAGCACAACCCAAG 59.124 57.895 0.00 0.00 39.83 3.61
2219 2610 2.265182 GCGCCTAAGCACAACCCAA 61.265 57.895 0.00 0.00 39.83 4.12
2220 2611 1.832719 TAGCGCCTAAGCACAACCCA 61.833 55.000 2.29 0.00 39.83 4.51
2243 2638 1.058284 ATGCAAGGTGTTTGGCCATT 58.942 45.000 6.09 0.00 37.26 3.16
2548 2943 4.401022 AGAAGAACAATGGCAGATGTCAA 58.599 39.130 8.89 0.00 31.21 3.18
2586 2981 9.731001 ATGGGCTAGCTAGGTTTATATAATACT 57.269 33.333 22.10 0.92 0.00 2.12
2632 3027 3.004024 TGGAAAGTCACGAACGTAGTC 57.996 47.619 0.00 0.00 45.00 2.59
2675 3070 8.801882 TTTGTCTCATTTTATAACCCAGTAGG 57.198 34.615 0.00 0.00 43.78 3.18
2679 3074 8.253113 AGCATTTTGTCTCATTTTATAACCCAG 58.747 33.333 0.00 0.00 0.00 4.45
2687 3082 7.364585 CCCCCAATAGCATTTTGTCTCATTTTA 60.365 37.037 0.00 0.00 0.00 1.52
2688 3083 6.408869 CCCCAATAGCATTTTGTCTCATTTT 58.591 36.000 0.00 0.00 0.00 1.82
2689 3084 5.104817 CCCCCAATAGCATTTTGTCTCATTT 60.105 40.000 0.00 0.00 0.00 2.32
2690 3085 4.406649 CCCCCAATAGCATTTTGTCTCATT 59.593 41.667 0.00 0.00 0.00 2.57
2691 3086 3.962718 CCCCCAATAGCATTTTGTCTCAT 59.037 43.478 0.00 0.00 0.00 2.90
2692 3087 3.364549 CCCCCAATAGCATTTTGTCTCA 58.635 45.455 0.00 0.00 0.00 3.27
2693 3088 2.101415 GCCCCCAATAGCATTTTGTCTC 59.899 50.000 0.00 0.00 0.00 3.36
2694 3089 2.110578 GCCCCCAATAGCATTTTGTCT 58.889 47.619 0.00 0.00 0.00 3.41
2695 3090 1.202405 CGCCCCCAATAGCATTTTGTC 60.202 52.381 0.00 0.00 0.00 3.18
2696 3091 0.823460 CGCCCCCAATAGCATTTTGT 59.177 50.000 0.00 0.00 0.00 2.83
2697 3092 0.104671 CCGCCCCCAATAGCATTTTG 59.895 55.000 0.00 0.00 0.00 2.44
2698 3093 1.048160 CCCGCCCCCAATAGCATTTT 61.048 55.000 0.00 0.00 0.00 1.82
2699 3094 1.457455 CCCGCCCCCAATAGCATTT 60.457 57.895 0.00 0.00 0.00 2.32
2700 3095 2.198426 CCCGCCCCCAATAGCATT 59.802 61.111 0.00 0.00 0.00 3.56
2701 3096 3.902112 CCCCGCCCCCAATAGCAT 61.902 66.667 0.00 0.00 0.00 3.79
2739 3134 4.673375 CTGGCAGCAACCCCAGCT 62.673 66.667 0.00 0.00 41.86 4.24
2744 3139 3.994853 GTTGGCTGGCAGCAACCC 61.995 66.667 37.49 22.16 44.75 4.11
2745 3140 3.994853 GGTTGGCTGGCAGCAACC 61.995 66.667 35.55 35.55 44.75 3.77
2746 3141 3.994853 GGGTTGGCTGGCAGCAAC 61.995 66.667 37.49 32.99 44.75 4.17
2750 3145 3.850098 AACTCGGGTTGGCTGGCAG 62.850 63.158 10.94 10.94 33.96 4.85
2751 3146 3.429372 AAACTCGGGTTGGCTGGCA 62.429 57.895 0.00 0.00 35.63 4.92
2752 3147 2.597510 AAACTCGGGTTGGCTGGC 60.598 61.111 0.00 0.00 35.63 4.85
2753 3148 1.228124 TCAAACTCGGGTTGGCTGG 60.228 57.895 0.00 0.00 35.63 4.85
2754 3149 0.535102 ACTCAAACTCGGGTTGGCTG 60.535 55.000 0.00 0.00 35.63 4.85
2755 3150 0.250338 GACTCAAACTCGGGTTGGCT 60.250 55.000 0.00 0.00 35.63 4.75
2756 3151 1.235281 GGACTCAAACTCGGGTTGGC 61.235 60.000 0.00 0.00 35.63 4.52
2757 3152 0.396811 AGGACTCAAACTCGGGTTGG 59.603 55.000 0.00 0.00 35.63 3.77
2758 3153 1.512926 CAGGACTCAAACTCGGGTTG 58.487 55.000 0.00 0.00 35.63 3.77
2759 3154 0.396811 CCAGGACTCAAACTCGGGTT 59.603 55.000 0.00 0.00 37.24 4.11
2760 3155 2.058675 CCAGGACTCAAACTCGGGT 58.941 57.895 0.00 0.00 0.00 5.28
2761 3156 1.376037 GCCAGGACTCAAACTCGGG 60.376 63.158 0.00 0.00 0.00 5.14
2762 3157 0.390472 GAGCCAGGACTCAAACTCGG 60.390 60.000 0.00 0.00 36.65 4.63
2763 3158 0.734253 CGAGCCAGGACTCAAACTCG 60.734 60.000 10.44 0.00 40.70 4.18
2764 3159 0.390472 CCGAGCCAGGACTCAAACTC 60.390 60.000 10.44 0.00 36.42 3.01
2765 3160 0.832135 TCCGAGCCAGGACTCAAACT 60.832 55.000 10.44 0.00 36.42 2.66
2766 3161 1.671742 TCCGAGCCAGGACTCAAAC 59.328 57.895 10.44 0.00 36.42 2.93
2767 3162 4.208426 TCCGAGCCAGGACTCAAA 57.792 55.556 10.44 0.00 36.42 2.69
2786 3181 4.719369 ACTCCGTGAGAACCGCGC 62.719 66.667 0.00 0.00 46.59 6.86
2788 3183 0.319641 AGAAACTCCGTGAGAACCGC 60.320 55.000 7.76 0.00 33.32 5.68
2789 3184 1.669211 GGAGAAACTCCGTGAGAACCG 60.669 57.143 7.76 0.00 41.08 4.44
2790 3185 2.081725 GGAGAAACTCCGTGAGAACC 57.918 55.000 7.76 0.00 41.08 3.62
2800 3195 7.484959 CGTTGGCAATTTTTATAGGAGAAACTC 59.515 37.037 1.92 0.00 0.00 3.01
2801 3196 7.175990 TCGTTGGCAATTTTTATAGGAGAAACT 59.824 33.333 1.92 0.00 0.00 2.66
2802 3197 7.309920 TCGTTGGCAATTTTTATAGGAGAAAC 58.690 34.615 1.92 0.00 0.00 2.78
2803 3198 7.362574 CCTCGTTGGCAATTTTTATAGGAGAAA 60.363 37.037 1.92 0.00 0.00 2.52
2804 3199 6.094881 CCTCGTTGGCAATTTTTATAGGAGAA 59.905 38.462 1.92 0.00 0.00 2.87
2805 3200 5.588648 CCTCGTTGGCAATTTTTATAGGAGA 59.411 40.000 1.92 0.00 0.00 3.71
2806 3201 5.221048 CCCTCGTTGGCAATTTTTATAGGAG 60.221 44.000 1.92 0.00 0.00 3.69
2807 3202 4.642885 CCCTCGTTGGCAATTTTTATAGGA 59.357 41.667 1.92 0.00 0.00 2.94
2808 3203 4.401202 ACCCTCGTTGGCAATTTTTATAGG 59.599 41.667 1.92 3.19 0.00 2.57
2809 3204 5.576447 ACCCTCGTTGGCAATTTTTATAG 57.424 39.130 1.92 0.00 0.00 1.31
2810 3205 5.986501 AACCCTCGTTGGCAATTTTTATA 57.013 34.783 1.92 0.00 0.00 0.98
2811 3206 4.882842 AACCCTCGTTGGCAATTTTTAT 57.117 36.364 1.92 0.00 0.00 1.40
2812 3207 5.379732 CTAACCCTCGTTGGCAATTTTTA 57.620 39.130 1.92 0.00 33.17 1.52
2813 3208 4.251543 CTAACCCTCGTTGGCAATTTTT 57.748 40.909 1.92 0.00 33.17 1.94
2814 3209 3.934457 CTAACCCTCGTTGGCAATTTT 57.066 42.857 1.92 0.00 33.17 1.82
2829 3224 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
2830 3225 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
2831 3226 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
2832 3227 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
2834 3229 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
2835 3230 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
2870 3265 6.042093 TCCCATGTAGGCAAATTTTAAACACA 59.958 34.615 0.00 0.00 35.39 3.72
3079 3474 9.474313 AGTAGGCAAACAAATAATATGGAAAGA 57.526 29.630 0.00 0.00 0.00 2.52
3114 3509 4.818534 TGTTCACAGAGAAAGCATCAAC 57.181 40.909 0.00 0.00 38.13 3.18
3197 3592 7.013834 ACTTTCTTAAAACCACCCATAATGGA 58.986 34.615 0.00 0.00 40.96 3.41
3394 3789 1.476488 TCATCTTCCTCGAATGCGTCA 59.524 47.619 0.00 0.00 38.98 4.35
3436 3831 7.544566 TCATCAAACTCATAGTTTTCGTAGTCC 59.455 37.037 2.36 0.00 45.38 3.85
3502 3897 4.464008 GGATATCCAAGCCATCAAACTGA 58.536 43.478 17.34 0.00 35.64 3.41
3606 4001 7.819415 TGTATCTTTCATCAACTTTCTCGTCAT 59.181 33.333 0.00 0.00 0.00 3.06
3607 4002 7.151976 TGTATCTTTCATCAACTTTCTCGTCA 58.848 34.615 0.00 0.00 0.00 4.35
3669 4064 9.857656 ACTCTGGTTTCACATAATAATGATCAT 57.142 29.630 1.18 1.18 36.54 2.45
3916 4312 3.873952 GACAGCAAGATACTGATTGGGAC 59.126 47.826 0.00 0.00 38.55 4.46
3953 4349 1.489649 AGGGCATCTCATCACAAGGAG 59.510 52.381 0.00 0.00 34.60 3.69
3980 4377 0.748005 CCCTTTGCAGTGTATCCCGG 60.748 60.000 0.00 0.00 0.00 5.73
3993 4390 9.603921 AAAAACATAATCATAAGATGCCCTTTG 57.396 29.630 0.00 0.00 36.34 2.77
4126 4523 1.508632 TGTCGAAGAAAAAGAGCCCG 58.491 50.000 0.00 0.00 39.69 6.13
4229 4626 7.398829 TCAAATGTGACTAAGGGCAAACTATA 58.601 34.615 0.00 0.00 0.00 1.31
4230 4627 6.245408 TCAAATGTGACTAAGGGCAAACTAT 58.755 36.000 0.00 0.00 0.00 2.12
4275 4673 2.299297 AGAGCGGTAGTTAACAAGCTGT 59.701 45.455 17.46 12.67 41.67 4.40
4419 4817 2.235650 CAGAGCCTGAATGGAGACAAGA 59.764 50.000 0.00 0.00 37.55 3.02
4502 4900 3.878358 GGGATCTCTTCTCCCCGG 58.122 66.667 0.00 0.00 45.80 5.73
4530 4928 1.728971 GACAGCAGGAATGTGTCTTCG 59.271 52.381 0.00 0.00 38.06 3.79
4575 4973 1.333619 CATACCTTTGGCGGATTTCGG 59.666 52.381 0.00 0.00 39.69 4.30
4643 5041 8.908903 TGGTACCCAAAAAGCAGTATTATTATG 58.091 33.333 10.07 0.00 0.00 1.90
4665 5066 2.910319 ACTAGACAGGGTTGCATTGGTA 59.090 45.455 0.00 0.00 0.00 3.25
4706 5107 5.595885 AGATGGTTGTCAACAGATCTATCG 58.404 41.667 20.23 0.00 33.08 2.92
4779 5192 2.915738 CAGAGTTGCAGGATTCAAGC 57.084 50.000 0.00 0.00 0.00 4.01
4838 5275 7.011016 CGAGGCAGTATATGAACAAATACACAA 59.989 37.037 0.00 0.00 32.14 3.33
4858 5295 2.766263 AGTCCACATTAGATTCGAGGCA 59.234 45.455 0.00 0.00 0.00 4.75
4877 5336 5.458041 AAATGCTGCACAAAAGATGTAGT 57.542 34.783 3.57 0.00 41.46 2.73
4878 5337 5.921976 TCAAAATGCTGCACAAAAGATGTAG 59.078 36.000 3.57 0.00 41.46 2.74
4880 5339 4.695396 TCAAAATGCTGCACAAAAGATGT 58.305 34.783 3.57 0.00 45.34 3.06
4890 5349 2.557924 ACGAAATCCTCAAAATGCTGCA 59.442 40.909 4.13 4.13 0.00 4.41
4915 5374 2.599875 TGCTTGCGGAAATGGCCA 60.600 55.556 8.56 8.56 0.00 5.36
5200 5659 2.766828 GACCACCACTTATAGCCTCAGT 59.233 50.000 0.00 0.00 0.00 3.41
5241 5705 2.165641 GGTAGTACCATTTTGGCTTGGC 59.834 50.000 14.82 0.00 42.67 4.52
5242 5706 3.694566 GAGGTAGTACCATTTTGGCTTGG 59.305 47.826 21.49 0.00 42.67 3.61
5243 5707 3.694566 GGAGGTAGTACCATTTTGGCTTG 59.305 47.826 21.49 0.00 42.67 4.01
5244 5708 3.621461 CGGAGGTAGTACCATTTTGGCTT 60.621 47.826 21.49 0.00 42.67 4.35
5245 5709 2.093128 CGGAGGTAGTACCATTTTGGCT 60.093 50.000 21.49 0.00 42.67 4.75
5246 5710 2.285977 CGGAGGTAGTACCATTTTGGC 58.714 52.381 21.49 1.81 42.67 4.52
5247 5711 3.528532 GACGGAGGTAGTACCATTTTGG 58.471 50.000 21.49 6.68 41.95 3.28
5248 5712 3.528532 GGACGGAGGTAGTACCATTTTG 58.471 50.000 21.49 8.51 41.95 2.44
5249 5713 2.502947 GGGACGGAGGTAGTACCATTTT 59.497 50.000 21.49 0.00 42.20 1.82
5252 5716 3.528078 GGGACGGAGGTAGTACCAT 57.472 57.895 21.49 6.55 42.20 3.55
5267 5731 4.028131 AGTGAATGACTTATACACCGGGA 58.972 43.478 6.32 0.00 32.76 5.14
5268 5732 4.402056 AGTGAATGACTTATACACCGGG 57.598 45.455 6.32 0.00 32.76 5.73
5269 5733 5.063438 CACAAGTGAATGACTTATACACCGG 59.937 44.000 0.00 0.00 43.52 5.28
5272 5736 7.815068 AGTCTCACAAGTGAATGACTTATACAC 59.185 37.037 15.37 0.00 43.52 2.90
5275 5739 8.354711 AGAGTCTCACAAGTGAATGACTTATA 57.645 34.615 19.64 0.00 43.52 0.98
5276 5740 7.238486 AGAGTCTCACAAGTGAATGACTTAT 57.762 36.000 19.64 12.46 43.52 1.73
5277 5741 6.656632 AGAGTCTCACAAGTGAATGACTTA 57.343 37.500 19.64 0.00 43.52 2.24
5278 5742 5.543507 AGAGTCTCACAAGTGAATGACTT 57.456 39.130 19.64 11.12 46.52 3.01
5279 5743 5.543507 AAGAGTCTCACAAGTGAATGACT 57.456 39.130 19.07 19.07 43.42 3.41
5280 5744 7.093354 TCATAAGAGTCTCACAAGTGAATGAC 58.907 38.462 12.21 12.21 39.39 3.06
5282 5746 8.489990 AATCATAAGAGTCTCACAAGTGAATG 57.510 34.615 1.94 3.86 39.39 2.67
5285 5749 9.591792 CATTAATCATAAGAGTCTCACAAGTGA 57.408 33.333 1.94 2.56 38.06 3.41
5286 5750 9.376075 ACATTAATCATAAGAGTCTCACAAGTG 57.624 33.333 1.94 0.00 0.00 3.16
5287 5751 9.593134 GACATTAATCATAAGAGTCTCACAAGT 57.407 33.333 1.94 0.00 31.96 3.16
5288 5752 9.591792 TGACATTAATCATAAGAGTCTCACAAG 57.408 33.333 1.94 0.00 34.03 3.16
5289 5753 9.371136 GTGACATTAATCATAAGAGTCTCACAA 57.629 33.333 1.94 0.00 34.03 3.33
5290 5754 7.981789 GGTGACATTAATCATAAGAGTCTCACA 59.018 37.037 1.94 0.00 34.03 3.58
5291 5755 7.168302 CGGTGACATTAATCATAAGAGTCTCAC 59.832 40.741 1.94 0.00 34.03 3.51
5292 5756 7.147897 ACGGTGACATTAATCATAAGAGTCTCA 60.148 37.037 1.94 0.00 34.03 3.27
5331 6004 7.823310 GCTCACAAACTCCATCAGATGATATAT 59.177 37.037 12.41 0.00 32.63 0.86
5332 6005 7.157347 GCTCACAAACTCCATCAGATGATATA 58.843 38.462 12.41 0.00 32.63 0.86
5333 6006 5.996513 GCTCACAAACTCCATCAGATGATAT 59.003 40.000 12.41 0.00 32.63 1.63
5334 6007 5.104817 TGCTCACAAACTCCATCAGATGATA 60.105 40.000 12.41 0.00 32.63 2.15
5335 6008 4.197750 GCTCACAAACTCCATCAGATGAT 58.802 43.478 12.41 0.00 34.56 2.45
5336 6009 3.008266 TGCTCACAAACTCCATCAGATGA 59.992 43.478 12.41 0.00 0.00 2.92
5337 6010 3.340928 TGCTCACAAACTCCATCAGATG 58.659 45.455 3.04 3.04 0.00 2.90
5367 6040 1.078143 CAAAGAAGGAGCGAGGGGG 60.078 63.158 0.00 0.00 0.00 5.40
5402 6075 4.631377 CAGATTCAACAAGCACCGAGAATA 59.369 41.667 0.00 0.00 0.00 1.75
5403 6076 3.438087 CAGATTCAACAAGCACCGAGAAT 59.562 43.478 0.00 0.00 0.00 2.40
5404 6077 2.807967 CAGATTCAACAAGCACCGAGAA 59.192 45.455 0.00 0.00 0.00 2.87
5437 6119 1.973281 CCGACAACAGCCAGCCAAT 60.973 57.895 0.00 0.00 0.00 3.16
5440 6122 3.357079 CACCGACAACAGCCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
5455 6137 2.109425 ATACAAGGCCTCGGAAACAC 57.891 50.000 5.23 0.00 0.00 3.32
5559 6241 3.568538 CACTGAATCCAAGAAAAAGGCG 58.431 45.455 0.00 0.00 0.00 5.52
5562 6244 3.985925 GCAGCACTGAATCCAAGAAAAAG 59.014 43.478 0.81 0.00 0.00 2.27
5563 6245 3.243839 GGCAGCACTGAATCCAAGAAAAA 60.244 43.478 0.81 0.00 0.00 1.94
5567 6249 0.694771 AGGCAGCACTGAATCCAAGA 59.305 50.000 0.81 0.00 0.00 3.02
5568 6250 0.809385 CAGGCAGCACTGAATCCAAG 59.191 55.000 0.81 0.00 40.97 3.61
5570 6252 1.001764 CCAGGCAGCACTGAATCCA 60.002 57.895 11.35 0.00 40.97 3.41
5572 6254 1.676635 TGCCAGGCAGCACTGAATC 60.677 57.895 11.22 3.05 40.97 2.52
5573 6255 2.437449 TGCCAGGCAGCACTGAAT 59.563 55.556 11.22 0.00 40.97 2.57
5575 6257 3.963687 CGATGCCAGGCAGCACTGA 62.964 63.158 28.84 0.00 45.92 3.41
5576 6258 3.506096 CGATGCCAGGCAGCACTG 61.506 66.667 28.84 9.59 45.92 3.66
5578 6260 3.503363 GACGATGCCAGGCAGCAC 61.503 66.667 28.84 17.89 45.92 4.40
5579 6261 4.783621 GGACGATGCCAGGCAGCA 62.784 66.667 28.84 0.60 45.92 4.41
5580 6262 4.783621 TGGACGATGCCAGGCAGC 62.784 66.667 20.52 20.52 43.65 5.25
5595 6277 0.534412 AGAAGTGATGAGCCGTCTGG 59.466 55.000 0.00 0.00 38.77 3.86
5597 6279 1.550327 TGAGAAGTGATGAGCCGTCT 58.450 50.000 0.00 0.00 0.00 4.18
5603 6285 6.814506 AAAATCTGGTTGAGAAGTGATGAG 57.185 37.500 0.00 0.00 33.12 2.90
5604 6286 7.000472 AGAAAAATCTGGTTGAGAAGTGATGA 59.000 34.615 0.00 0.00 33.12 2.92
5618 6300 5.166398 GCTGGATTGTTGAGAAAAATCTGG 58.834 41.667 0.00 0.00 32.15 3.86
5623 6305 3.253188 CGAGGCTGGATTGTTGAGAAAAA 59.747 43.478 0.00 0.00 0.00 1.94
5624 6306 2.813754 CGAGGCTGGATTGTTGAGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
5625 6307 2.224523 ACGAGGCTGGATTGTTGAGAAA 60.225 45.455 2.65 0.00 0.00 2.52
5626 6308 1.347707 ACGAGGCTGGATTGTTGAGAA 59.652 47.619 2.65 0.00 0.00 2.87
5627 6309 0.976641 ACGAGGCTGGATTGTTGAGA 59.023 50.000 2.65 0.00 0.00 3.27
5628 6310 1.734465 GAACGAGGCTGGATTGTTGAG 59.266 52.381 2.65 0.00 0.00 3.02
5629 6311 1.071542 TGAACGAGGCTGGATTGTTGA 59.928 47.619 2.65 0.00 0.00 3.18
5630 6312 1.522668 TGAACGAGGCTGGATTGTTG 58.477 50.000 2.65 0.00 0.00 3.33
5631 6313 2.496899 ATGAACGAGGCTGGATTGTT 57.503 45.000 2.65 0.00 0.00 2.83
5632 6314 2.236146 TGTATGAACGAGGCTGGATTGT 59.764 45.455 2.65 0.00 0.00 2.71
5633 6315 2.609459 GTGTATGAACGAGGCTGGATTG 59.391 50.000 2.65 0.00 0.00 2.67
5634 6316 2.738643 CGTGTATGAACGAGGCTGGATT 60.739 50.000 2.65 0.00 46.49 3.01
5635 6317 1.202417 CGTGTATGAACGAGGCTGGAT 60.202 52.381 2.65 0.00 46.49 3.41
5636 6318 0.172578 CGTGTATGAACGAGGCTGGA 59.827 55.000 2.65 0.00 46.49 3.86
5670 6352 0.600255 AGTTGTCTTCGCGTGGGAAG 60.600 55.000 17.69 17.69 43.78 3.46
5682 6364 5.694006 CACGATTTCTTCTCTTCAGTTGTCT 59.306 40.000 0.00 0.00 0.00 3.41
5685 6367 5.387855 CGTCACGATTTCTTCTCTTCAGTTG 60.388 44.000 0.00 0.00 0.00 3.16
5705 6387 2.758009 CCGTAAAAAGAGGGTTCGTCA 58.242 47.619 0.00 0.00 0.00 4.35
5706 6388 1.462283 GCCGTAAAAAGAGGGTTCGTC 59.538 52.381 0.00 0.00 0.00 4.20
5707 6389 1.202675 TGCCGTAAAAAGAGGGTTCGT 60.203 47.619 0.00 0.00 0.00 3.85
5708 6390 1.463444 CTGCCGTAAAAAGAGGGTTCG 59.537 52.381 0.00 0.00 0.00 3.95
5709 6391 1.199327 GCTGCCGTAAAAAGAGGGTTC 59.801 52.381 0.00 0.00 0.00 3.62
5741 6423 0.697079 CCTATCCTGCCATGGCTCAT 59.303 55.000 35.53 24.88 42.51 2.90
5743 6425 0.324285 CTCCTATCCTGCCATGGCTC 59.676 60.000 35.53 10.47 42.51 4.70
5871 7374 4.830600 GGTGGTAGATGGGACTTTCAAAAA 59.169 41.667 0.00 0.00 0.00 1.94
5872 7375 4.141135 TGGTGGTAGATGGGACTTTCAAAA 60.141 41.667 0.00 0.00 0.00 2.44
5873 7376 3.396276 TGGTGGTAGATGGGACTTTCAAA 59.604 43.478 0.00 0.00 0.00 2.69
5874 7377 2.983192 TGGTGGTAGATGGGACTTTCAA 59.017 45.455 0.00 0.00 0.00 2.69
5875 7378 2.304761 GTGGTGGTAGATGGGACTTTCA 59.695 50.000 0.00 0.00 0.00 2.69
5876 7379 2.572104 AGTGGTGGTAGATGGGACTTTC 59.428 50.000 0.00 0.00 0.00 2.62
5877 7380 2.305927 CAGTGGTGGTAGATGGGACTTT 59.694 50.000 0.00 0.00 0.00 2.66
5878 7381 1.909302 CAGTGGTGGTAGATGGGACTT 59.091 52.381 0.00 0.00 0.00 3.01
5879 7382 1.573108 CAGTGGTGGTAGATGGGACT 58.427 55.000 0.00 0.00 0.00 3.85
5880 7383 0.541863 CCAGTGGTGGTAGATGGGAC 59.458 60.000 0.00 0.00 39.30 4.46
5881 7384 3.006061 CCAGTGGTGGTAGATGGGA 57.994 57.895 0.00 0.00 39.30 4.37
5882 7385 1.915228 CCCAGTGGTGGTAGATGGG 59.085 63.158 8.74 0.00 43.23 4.00
5883 7386 2.696864 ACCCAGTGGTGGTAGATGG 58.303 57.895 8.74 0.00 45.58 3.51
5894 7397 4.415783 GGTTTAGGCCACCCAGTG 57.584 61.111 5.01 0.00 0.00 3.66
5905 7408 3.261897 ACTCTCTGTGATGTGGGGTTTAG 59.738 47.826 0.00 0.00 0.00 1.85
5984 7487 2.122189 CCCTCTCATCCCCTCCCC 60.122 72.222 0.00 0.00 0.00 4.81
5985 7488 2.122189 CCCCTCTCATCCCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
5988 7491 1.238896 TCCTTCCCCTCTCATCCCCT 61.239 60.000 0.00 0.00 0.00 4.79
5989 7492 0.766288 CTCCTTCCCCTCTCATCCCC 60.766 65.000 0.00 0.00 0.00 4.81
5990 7493 0.266152 TCTCCTTCCCCTCTCATCCC 59.734 60.000 0.00 0.00 0.00 3.85
5991 7494 2.158173 AGATCTCCTTCCCCTCTCATCC 60.158 54.545 0.00 0.00 0.00 3.51
5992 7495 3.165071 GAGATCTCCTTCCCCTCTCATC 58.835 54.545 12.00 0.00 34.00 2.92
5993 7496 2.521841 TGAGATCTCCTTCCCCTCTCAT 59.478 50.000 20.03 0.00 37.89 2.90
5994 7497 1.933051 TGAGATCTCCTTCCCCTCTCA 59.067 52.381 20.03 0.00 39.87 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.