Multiple sequence alignment - TraesCS1A01G387600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G387600 chr1A 100.000 3941 0 0 1 3941 556296318 556300258 0.000000e+00 7278.0
1 TraesCS1A01G387600 chr1D 95.070 3955 123 33 1 3941 464138451 464142347 0.000000e+00 6157.0
2 TraesCS1A01G387600 chr1B 94.026 3013 110 29 102 3059 640153815 640156812 0.000000e+00 4503.0
3 TraesCS1A01G387600 chr1B 94.184 619 29 4 3195 3806 640156882 640157500 0.000000e+00 937.0
4 TraesCS1A01G387600 chr1B 93.750 112 6 1 1 112 640153664 640153774 2.440000e-37 167.0
5 TraesCS1A01G387600 chr1B 92.035 113 9 0 3829 3941 640157492 640157604 4.080000e-35 159.0
6 TraesCS1A01G387600 chr7A 87.791 172 17 4 3593 3763 85734993 85735161 8.640000e-47 198.0
7 TraesCS1A01G387600 chr7D 97.403 77 1 1 1704 1780 107135336 107135261 3.200000e-26 130.0
8 TraesCS1A01G387600 chr6D 95.000 80 3 1 1701 1780 421182424 421182502 1.490000e-24 124.0
9 TraesCS1A01G387600 chr4D 96.104 77 2 1 1704 1780 177515052 177514977 1.490000e-24 124.0
10 TraesCS1A01G387600 chr6B 93.750 80 4 1 1701 1780 7162428 7162506 6.920000e-23 119.0
11 TraesCS1A01G387600 chr2B 94.667 75 3 1 1706 1780 754437617 754437544 8.950000e-22 115.0
12 TraesCS1A01G387600 chr2A 92.683 82 3 3 1701 1780 635080922 635080842 8.950000e-22 115.0
13 TraesCS1A01G387600 chr2A 95.349 43 2 0 333 375 759752837 759752879 7.070000e-08 69.4
14 TraesCS1A01G387600 chr2A 95.349 43 0 1 343 383 706284759 706284717 2.540000e-07 67.6
15 TraesCS1A01G387600 chr2A 85.965 57 6 1 322 376 695980213 695980269 4.250000e-05 60.2
16 TraesCS1A01G387600 chr7B 92.500 80 5 1 1701 1780 644282203 644282281 3.220000e-21 113.0
17 TraesCS1A01G387600 chr3A 93.333 60 2 1 325 382 646133713 646133772 1.950000e-13 87.9
18 TraesCS1A01G387600 chr4B 94.231 52 1 1 325 374 618330491 618330542 1.170000e-10 78.7
19 TraesCS1A01G387600 chr4A 95.349 43 1 1 341 382 663145316 663145358 2.540000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G387600 chr1A 556296318 556300258 3940 False 7278.0 7278 100.00000 1 3941 1 chr1A.!!$F1 3940
1 TraesCS1A01G387600 chr1D 464138451 464142347 3896 False 6157.0 6157 95.07000 1 3941 1 chr1D.!!$F1 3940
2 TraesCS1A01G387600 chr1B 640153664 640157604 3940 False 1441.5 4503 93.49875 1 3941 4 chr1B.!!$F1 3940

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 610 0.100682 TGAGCTCGTATCCGAACAGC 59.899 55.000 9.64 0.0 43.69 4.4 F
985 1070 1.003696 GGAGCTTAACTGGCTTCTGGT 59.996 52.381 0.00 0.0 40.40 4.0 F
1818 1918 1.227764 CATCCATGTCAGGCGAGGG 60.228 63.158 0.00 0.0 0.00 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2100 2.099756 CAGAGTCAGACACACAGACACA 59.900 50.000 2.66 0.0 37.46 3.72 R
2784 2892 1.536766 TCCGTCGTGTCGATGTACTTT 59.463 47.619 9.84 0.0 40.74 2.66 R
3064 3172 0.667487 TTTTCAGAGGCTCGCAGTCG 60.667 55.000 9.22 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.201990 GCATGACAATTTTTGTTGGCCAAA 60.202 37.500 22.47 4.08 45.52 3.28
126 176 6.786103 GCATAACTAAAATTGCGAGACGATAC 59.214 38.462 0.00 0.00 0.00 2.24
225 275 0.871722 TGTTTTGGTTGCTCGATCCG 59.128 50.000 0.00 0.00 0.00 4.18
268 318 1.828595 TGCCTAAATCGTAGCTGACCA 59.171 47.619 0.00 0.00 0.00 4.02
305 356 6.425417 GCCGAAGAAAGAATATTAGGAGAAGG 59.575 42.308 0.00 0.00 0.00 3.46
311 362 9.019542 AGAAAGAATATTAGGAGAAGGGGAAAT 57.980 33.333 0.00 0.00 0.00 2.17
314 365 5.867757 ATATTAGGAGAAGGGGAAATGGG 57.132 43.478 0.00 0.00 0.00 4.00
468 523 5.987953 CAGATGACATCCGTGAAATATCTGT 59.012 40.000 11.92 0.00 36.92 3.41
506 561 8.038492 TCAATGACATTCATGAAACGTTGATA 57.962 30.769 26.07 15.78 37.15 2.15
533 598 2.662006 TTCCTGTTCATCTGAGCTCG 57.338 50.000 9.64 4.19 0.00 5.03
534 599 1.550327 TCCTGTTCATCTGAGCTCGT 58.450 50.000 9.64 0.00 0.00 4.18
535 600 2.723273 TCCTGTTCATCTGAGCTCGTA 58.277 47.619 9.64 0.00 0.00 3.43
536 601 3.291584 TCCTGTTCATCTGAGCTCGTAT 58.708 45.455 9.64 1.72 0.00 3.06
537 602 3.316588 TCCTGTTCATCTGAGCTCGTATC 59.683 47.826 9.64 0.00 0.00 2.24
539 604 2.033424 TGTTCATCTGAGCTCGTATCCG 59.967 50.000 9.64 0.00 0.00 4.18
540 605 2.256117 TCATCTGAGCTCGTATCCGA 57.744 50.000 9.64 0.00 41.73 4.55
541 606 2.572290 TCATCTGAGCTCGTATCCGAA 58.428 47.619 9.64 0.00 43.69 4.30
542 607 2.290916 TCATCTGAGCTCGTATCCGAAC 59.709 50.000 9.64 0.00 43.69 3.95
543 608 1.746470 TCTGAGCTCGTATCCGAACA 58.254 50.000 9.64 0.00 43.69 3.18
544 609 1.671328 TCTGAGCTCGTATCCGAACAG 59.329 52.381 9.64 0.00 43.69 3.16
545 610 0.100682 TGAGCTCGTATCCGAACAGC 59.899 55.000 9.64 0.00 43.69 4.40
573 643 3.285745 CGGAAGCAAACACGTTTAAGAC 58.714 45.455 0.00 0.00 0.00 3.01
685 765 1.753141 CGTCTCCCTCCCGGAAAGATA 60.753 57.143 0.73 0.00 41.40 1.98
854 935 1.229209 TCTCTCCCACTCCCACACC 60.229 63.158 0.00 0.00 0.00 4.16
956 1041 1.130613 CTTATAATGCGCGCTCGGC 59.869 57.895 33.29 2.46 35.95 5.54
985 1070 1.003696 GGAGCTTAACTGGCTTCTGGT 59.996 52.381 0.00 0.00 40.40 4.00
1126 1211 4.760047 GCCTCTTCCGCGCCAAGA 62.760 66.667 15.50 15.50 0.00 3.02
1582 1676 2.355837 GCAAGGACGTCGTCTGCA 60.356 61.111 25.96 0.00 32.47 4.41
1670 1764 1.229658 CCACCTTCTCCCAGTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
1791 1891 1.798813 GTCATCCACAACAAGGACGAC 59.201 52.381 0.00 0.00 40.59 4.34
1806 1906 2.104331 GACGTCGTCGGCATCCAT 59.896 61.111 10.05 0.00 45.53 3.41
1818 1918 1.227764 CATCCATGTCAGGCGAGGG 60.228 63.158 0.00 0.00 0.00 4.30
1884 1984 3.896133 GCCTCGCCGGACGTCATA 61.896 66.667 18.91 0.00 44.19 2.15
1995 2100 9.303116 AGATGTACGATAATATCTTCTCAACCT 57.697 33.333 0.00 0.00 0.00 3.50
2784 2892 2.046023 CCCGTGCAGAAGATGGCA 60.046 61.111 0.00 0.00 37.77 4.92
2942 3050 1.000496 AGAGGACGACGAGGTTTGAAC 60.000 52.381 0.00 0.00 0.00 3.18
2988 3096 1.066929 ACAGAGTGCGCACATACATCA 60.067 47.619 39.21 0.00 0.00 3.07
2996 3104 3.194861 GCGCACATACATCAAAGAGGTA 58.805 45.455 0.30 0.00 33.44 3.08
3006 3114 9.121658 CATACATCAAAGAGGTAGTACAGACTA 57.878 37.037 2.06 0.00 37.10 2.59
3007 3115 7.633193 ACATCAAAGAGGTAGTACAGACTAG 57.367 40.000 2.06 0.00 38.88 2.57
3008 3116 7.176490 ACATCAAAGAGGTAGTACAGACTAGT 58.824 38.462 0.00 0.00 38.88 2.57
3009 3117 8.327271 ACATCAAAGAGGTAGTACAGACTAGTA 58.673 37.037 0.00 0.00 38.88 1.82
3010 3118 8.614346 CATCAAAGAGGTAGTACAGACTAGTAC 58.386 40.741 0.00 0.00 43.61 2.73
3011 3119 7.683578 TCAAAGAGGTAGTACAGACTAGTACA 58.316 38.462 0.00 2.78 45.25 2.90
3059 3167 6.928348 TCTTGTAAATCAGGACCAGTTAGA 57.072 37.500 0.00 0.00 0.00 2.10
3064 3172 0.898320 TCAGGACCAGTTAGAGCTGC 59.102 55.000 0.00 0.00 35.28 5.25
3065 3173 0.459237 CAGGACCAGTTAGAGCTGCG 60.459 60.000 0.00 0.00 35.28 5.18
3066 3174 0.612174 AGGACCAGTTAGAGCTGCGA 60.612 55.000 0.00 0.00 35.28 5.10
3067 3175 0.458716 GGACCAGTTAGAGCTGCGAC 60.459 60.000 0.00 0.00 35.28 5.19
3068 3176 0.528470 GACCAGTTAGAGCTGCGACT 59.472 55.000 0.00 7.43 35.28 4.18
3069 3177 0.244994 ACCAGTTAGAGCTGCGACTG 59.755 55.000 16.15 16.15 39.29 3.51
3070 3178 1.080995 CCAGTTAGAGCTGCGACTGC 61.081 60.000 17.08 0.00 38.48 4.40
3080 3188 4.121669 GCGACTGCGAGCCTCTGA 62.122 66.667 0.00 0.00 40.82 3.27
3081 3189 2.568612 CGACTGCGAGCCTCTGAA 59.431 61.111 0.00 0.00 40.82 3.02
3082 3190 1.080501 CGACTGCGAGCCTCTGAAA 60.081 57.895 0.00 0.00 40.82 2.69
3083 3191 0.667487 CGACTGCGAGCCTCTGAAAA 60.667 55.000 0.00 0.00 40.82 2.29
3102 3210 7.857389 TCTGAAAAGAGATGTTGAAATTTGTCG 59.143 33.333 0.00 0.00 0.00 4.35
3150 3258 5.754890 CACATTTTAAGCATATTTCCCTGCC 59.245 40.000 0.00 0.00 39.22 4.85
3171 3279 3.970225 CGAAGATGTCGTCCGTTTTAAC 58.030 45.455 0.00 0.00 45.09 2.01
3174 3282 5.587033 AAGATGTCGTCCGTTTTAACTTC 57.413 39.130 0.00 0.00 0.00 3.01
3175 3283 3.992427 AGATGTCGTCCGTTTTAACTTCC 59.008 43.478 0.00 0.00 0.00 3.46
3226 3334 0.327924 ATGAACCAGCATCCACCGAA 59.672 50.000 0.00 0.00 0.00 4.30
3229 3338 2.026729 TGAACCAGCATCCACCGAATTA 60.027 45.455 0.00 0.00 0.00 1.40
3235 3344 4.633126 CCAGCATCCACCGAATTATATCAG 59.367 45.833 0.00 0.00 0.00 2.90
3263 3372 3.999663 CCAACAGAACTGAACCTCTGATC 59.000 47.826 8.87 0.00 41.38 2.92
3272 3381 4.344679 ACTGAACCTCTGATCTCATCATCC 59.655 45.833 0.00 0.00 38.85 3.51
3328 3440 2.871633 TGCACCTAATGTACATGCATCG 59.128 45.455 15.31 4.20 41.18 3.84
3355 3467 2.654877 GGTGCTCGGTTTCTCGGA 59.345 61.111 0.00 0.00 0.00 4.55
3362 3474 0.953727 TCGGTTTCTCGGACGAAGAA 59.046 50.000 0.00 0.00 31.79 2.52
3496 3608 2.892852 CCAAGAGGCATTTGTTTCCTCA 59.107 45.455 9.80 0.00 46.71 3.86
3497 3609 3.305608 CCAAGAGGCATTTGTTTCCTCAC 60.306 47.826 9.80 0.00 46.71 3.51
3541 3656 1.675310 CCAGCGGATGCAAGAACCA 60.675 57.895 0.00 0.00 46.23 3.67
3623 3738 1.080569 GGCCTTGTTGATTGCCACG 60.081 57.895 0.00 0.00 43.46 4.94
3715 3830 5.657470 TCAGTAAACAGAATATCGCATGC 57.343 39.130 7.91 7.91 0.00 4.06
3752 3867 0.179009 AGCAAAGAACAGCTCCAGCA 60.179 50.000 0.48 0.00 45.16 4.41
3852 3967 4.903045 TTTGGATCGAGGGAAGTTAAGT 57.097 40.909 0.00 0.00 0.00 2.24
3883 3998 3.320673 TGTGTACGCATTACATCACCA 57.679 42.857 4.65 0.00 42.82 4.17
3887 4002 1.372582 ACGCATTACATCACCAGCAG 58.627 50.000 0.00 0.00 0.00 4.24
3896 4011 2.842394 ATCACCAGCAGCGAACTCCG 62.842 60.000 0.00 0.00 42.21 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 3.340814 TTTGCTTTCTTTGGCCAACAA 57.659 38.095 20.35 15.13 37.28 2.83
79 80 4.751600 GCTTGCCAACTAAATTTGCTTTCT 59.248 37.500 0.00 0.00 0.00 2.52
225 275 3.885901 GCTGAGGTTTTCCCTTGGATATC 59.114 47.826 0.00 0.00 46.51 1.63
305 356 0.613260 GTTTGCTTCCCCCATTTCCC 59.387 55.000 0.00 0.00 0.00 3.97
311 362 0.106419 ACTTTCGTTTGCTTCCCCCA 60.106 50.000 0.00 0.00 0.00 4.96
314 365 1.029681 ACCACTTTCGTTTGCTTCCC 58.970 50.000 0.00 0.00 0.00 3.97
516 581 3.551863 GGATACGAGCTCAGATGAACAGG 60.552 52.174 15.40 0.00 0.00 4.00
533 598 0.804933 GGACACGGCTGTTCGGATAC 60.805 60.000 0.00 0.00 0.00 2.24
534 599 1.514087 GGACACGGCTGTTCGGATA 59.486 57.895 0.00 0.00 0.00 2.59
535 600 2.264794 GGACACGGCTGTTCGGAT 59.735 61.111 0.00 0.00 0.00 4.18
536 601 4.351938 CGGACACGGCTGTTCGGA 62.352 66.667 0.00 0.00 44.59 4.55
573 643 5.819901 GGATACAAGAATCCAAGTCTTCTGG 59.180 44.000 0.00 0.00 44.26 3.86
685 765 2.180204 CGGCGCGGAAGGAATGAAT 61.180 57.895 9.72 0.00 0.00 2.57
756 837 2.743928 GCTTGGGCAGAGTGACGG 60.744 66.667 0.00 0.00 38.54 4.79
838 919 1.841556 GTGGTGTGGGAGTGGGAGA 60.842 63.158 0.00 0.00 0.00 3.71
897 981 1.232792 CAGAGAGGAGGGGGAGAGG 59.767 68.421 0.00 0.00 0.00 3.69
903 987 2.041405 GGGGTCAGAGAGGAGGGG 60.041 72.222 0.00 0.00 0.00 4.79
956 1041 1.227002 GTTAAGCTCCTCGGCTCCG 60.227 63.158 1.14 1.14 42.24 4.63
985 1070 2.896677 ATCATCCCCGCTCCACTCCA 62.897 60.000 0.00 0.00 0.00 3.86
1126 1211 4.070552 GAGGTCGAGCAGGCGGTT 62.071 66.667 18.15 0.00 0.00 4.44
1582 1676 2.268167 GAGCCCCTGAGCTGCTTGAT 62.268 60.000 2.53 0.00 45.15 2.57
1791 1891 2.202743 ACATGGATGCCGACGACG 60.203 61.111 0.00 0.00 39.43 5.12
1995 2100 2.099756 CAGAGTCAGACACACAGACACA 59.900 50.000 2.66 0.00 37.46 3.72
2784 2892 1.536766 TCCGTCGTGTCGATGTACTTT 59.463 47.619 9.84 0.00 40.74 2.66
2942 3050 3.258228 TGTACACGATATGCACAACTGG 58.742 45.455 0.00 0.00 31.25 4.00
2988 3096 7.688343 ACTGTACTAGTCTGTACTACCTCTTT 58.312 38.462 0.00 0.00 42.22 2.52
3006 3114 6.887545 ACAAGCACTCTCTAATCTACTGTACT 59.112 38.462 0.00 0.00 0.00 2.73
3007 3115 7.090953 ACAAGCACTCTCTAATCTACTGTAC 57.909 40.000 0.00 0.00 0.00 2.90
3008 3116 6.884836 TGACAAGCACTCTCTAATCTACTGTA 59.115 38.462 0.00 0.00 0.00 2.74
3009 3117 5.712446 TGACAAGCACTCTCTAATCTACTGT 59.288 40.000 0.00 0.00 0.00 3.55
3010 3118 6.201226 TGACAAGCACTCTCTAATCTACTG 57.799 41.667 0.00 0.00 0.00 2.74
3011 3119 6.842437 TTGACAAGCACTCTCTAATCTACT 57.158 37.500 0.00 0.00 0.00 2.57
3064 3172 0.667487 TTTTCAGAGGCTCGCAGTCG 60.667 55.000 9.22 0.00 0.00 4.18
3065 3173 1.074752 CTTTTCAGAGGCTCGCAGTC 58.925 55.000 9.22 0.00 0.00 3.51
3066 3174 0.681733 TCTTTTCAGAGGCTCGCAGT 59.318 50.000 9.22 0.00 0.00 4.40
3067 3175 1.067283 TCTCTTTTCAGAGGCTCGCAG 60.067 52.381 9.22 3.57 46.17 5.18
3068 3176 0.969149 TCTCTTTTCAGAGGCTCGCA 59.031 50.000 9.22 0.00 46.17 5.10
3069 3177 1.932511 CATCTCTTTTCAGAGGCTCGC 59.067 52.381 9.22 0.00 46.17 5.03
3070 3178 3.244033 ACATCTCTTTTCAGAGGCTCG 57.756 47.619 9.22 4.43 46.17 5.03
3071 3179 4.573900 TCAACATCTCTTTTCAGAGGCTC 58.426 43.478 6.34 6.34 46.17 4.70
3072 3180 4.630644 TCAACATCTCTTTTCAGAGGCT 57.369 40.909 0.00 0.00 46.17 4.58
3073 3181 5.695851 TTTCAACATCTCTTTTCAGAGGC 57.304 39.130 0.00 0.00 46.17 4.70
3074 3182 8.139989 ACAAATTTCAACATCTCTTTTCAGAGG 58.860 33.333 0.00 0.00 46.17 3.69
3076 3184 7.857389 CGACAAATTTCAACATCTCTTTTCAGA 59.143 33.333 0.00 0.00 0.00 3.27
3077 3185 7.857389 TCGACAAATTTCAACATCTCTTTTCAG 59.143 33.333 0.00 0.00 0.00 3.02
3078 3186 7.702386 TCGACAAATTTCAACATCTCTTTTCA 58.298 30.769 0.00 0.00 0.00 2.69
3079 3187 8.560576 TTCGACAAATTTCAACATCTCTTTTC 57.439 30.769 0.00 0.00 0.00 2.29
3080 3188 8.925161 TTTCGACAAATTTCAACATCTCTTTT 57.075 26.923 0.00 0.00 0.00 2.27
3081 3189 8.190784 ACTTTCGACAAATTTCAACATCTCTTT 58.809 29.630 0.00 0.00 0.00 2.52
3082 3190 7.707104 ACTTTCGACAAATTTCAACATCTCTT 58.293 30.769 0.00 0.00 0.00 2.85
3083 3191 7.264373 ACTTTCGACAAATTTCAACATCTCT 57.736 32.000 0.00 0.00 0.00 3.10
3124 3232 7.417342 GGCAGGGAAATATGCTTAAAATGTGTA 60.417 37.037 0.00 0.00 42.19 2.90
3125 3233 6.340522 GCAGGGAAATATGCTTAAAATGTGT 58.659 36.000 0.00 0.00 39.38 3.72
3126 3234 5.754890 GGCAGGGAAATATGCTTAAAATGTG 59.245 40.000 0.00 0.00 42.19 3.21
3143 3251 2.892640 CGACATCTTCGGCAGGGA 59.107 61.111 0.00 0.00 44.60 4.20
3160 3268 3.208594 ACCAGTGGAAGTTAAAACGGAC 58.791 45.455 18.40 0.00 0.00 4.79
3165 3273 8.983702 ATTACAGTTACCAGTGGAAGTTAAAA 57.016 30.769 18.40 2.98 28.97 1.52
3168 3276 7.511268 ACAATTACAGTTACCAGTGGAAGTTA 58.489 34.615 18.40 0.00 28.97 2.24
3170 3278 5.937111 ACAATTACAGTTACCAGTGGAAGT 58.063 37.500 18.40 8.85 28.97 3.01
3171 3279 7.876068 TCTTACAATTACAGTTACCAGTGGAAG 59.124 37.037 18.40 3.64 28.97 3.46
3174 3282 7.065803 CCATCTTACAATTACAGTTACCAGTGG 59.934 40.741 7.91 7.91 0.00 4.00
3175 3283 7.822334 TCCATCTTACAATTACAGTTACCAGTG 59.178 37.037 0.00 0.00 0.00 3.66
3226 3334 8.960591 CAGTTCTGTTGGGTTTTCTGATATAAT 58.039 33.333 0.00 0.00 0.00 1.28
3229 3338 6.542821 TCAGTTCTGTTGGGTTTTCTGATAT 58.457 36.000 0.00 0.00 0.00 1.63
3235 3344 3.699538 AGGTTCAGTTCTGTTGGGTTTTC 59.300 43.478 0.00 0.00 0.00 2.29
3263 3372 2.947448 TGTGTGACGAGGATGATGAG 57.053 50.000 0.00 0.00 0.00 2.90
3272 3381 2.225068 ACCTGAACTTGTGTGACGAG 57.775 50.000 0.00 0.00 35.70 4.18
3362 3474 2.882761 GTTTTAAGGTGGCCTTTCGAGT 59.117 45.455 3.32 0.00 41.69 4.18
3496 3608 2.309528 TTGAAGCGTGACTGTTGAGT 57.690 45.000 0.00 0.00 33.98 3.41
3497 3609 2.597505 CGTTTGAAGCGTGACTGTTGAG 60.598 50.000 0.00 0.00 0.00 3.02
3541 3656 3.852578 ACTCATTGGAAAGGTATGTCCCT 59.147 43.478 0.00 0.00 36.75 4.20
3715 3830 3.538591 TGCTGCTAATCCAGTCATGAAG 58.461 45.455 0.00 0.00 35.28 3.02
3869 3984 0.028505 GCTGCTGGTGATGTAATGCG 59.971 55.000 0.00 0.00 0.00 4.73
3876 3991 1.364626 GGAGTTCGCTGCTGGTGATG 61.365 60.000 0.00 0.00 34.15 3.07
3877 3992 1.078848 GGAGTTCGCTGCTGGTGAT 60.079 57.895 0.00 0.00 34.15 3.06
3883 3998 0.037326 TTGATTCGGAGTTCGCTGCT 60.037 50.000 0.00 0.00 39.05 4.24
3887 4002 5.597813 ATCATAATTGATTCGGAGTTCGC 57.402 39.130 0.00 0.00 39.64 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.