Multiple sequence alignment - TraesCS1A01G387000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G387000 chr1A 100.000 3533 0 0 1 3533 555816510 555820042 0.000000e+00 6525.0
1 TraesCS1A01G387000 chr1A 91.935 248 11 1 18 256 98487605 98487358 4.370000e-89 339.0
2 TraesCS1A01G387000 chr1D 93.453 1222 47 13 638 1852 463856208 463857403 0.000000e+00 1783.0
3 TraesCS1A01G387000 chr1D 91.250 960 65 14 2578 3531 463857895 463858841 0.000000e+00 1290.0
4 TraesCS1A01G387000 chr1D 91.717 495 34 3 1902 2395 463857408 463857896 0.000000e+00 680.0
5 TraesCS1A01G387000 chr1D 89.219 269 26 3 374 641 463855915 463856181 2.030000e-87 333.0
6 TraesCS1A01G387000 chr1D 78.333 120 21 5 2055 2171 415493193 415493076 4.890000e-09 73.1
7 TraesCS1A01G387000 chr1B 89.091 1100 89 21 2172 3256 639005601 639006684 0.000000e+00 1338.0
8 TraesCS1A01G387000 chr1B 84.691 1117 53 26 793 1852 639004350 639005405 0.000000e+00 1007.0
9 TraesCS1A01G387000 chr1B 94.141 256 14 1 3278 3533 639006674 639006928 4.280000e-104 388.0
10 TraesCS1A01G387000 chr1B 86.316 95 6 6 1898 1989 639005404 639005494 2.900000e-16 97.1
11 TraesCS1A01G387000 chr5B 83.685 521 46 21 1268 1766 228170312 228170815 4.160000e-124 455.0
12 TraesCS1A01G387000 chr5B 83.824 272 38 5 1009 1276 228169994 228170263 1.630000e-63 254.0
13 TraesCS1A01G387000 chr5B 83.696 92 11 2 2084 2173 134791774 134791685 2.260000e-12 84.2
14 TraesCS1A01G387000 chr5B 85.246 61 9 0 3067 3127 660348837 660348777 2.940000e-06 63.9
15 TraesCS1A01G387000 chrUn 84.696 477 47 11 1309 1766 306016955 306017424 1.500000e-123 453.0
16 TraesCS1A01G387000 chrUn 87.003 377 32 8 1403 1766 324543453 324543825 3.280000e-110 409.0
17 TraesCS1A01G387000 chrUn 85.375 253 32 4 1028 1276 306016593 306016844 1.260000e-64 257.0
18 TraesCS1A01G387000 chr5A 85.225 467 40 13 1321 1764 277968613 277969073 1.500000e-123 453.0
19 TraesCS1A01G387000 chr5A 84.980 253 33 4 1028 1276 277968239 277968490 5.850000e-63 252.0
20 TraesCS1A01G387000 chr5A 79.851 268 43 8 2547 2807 613583770 613583507 6.020000e-43 185.0
21 TraesCS1A01G387000 chr3D 92.887 239 8 4 18 247 27687010 27686772 4.370000e-89 339.0
22 TraesCS1A01G387000 chr3D 85.294 68 7 1 288 355 584366367 584366303 2.280000e-07 67.6
23 TraesCS1A01G387000 chr3D 93.333 45 1 2 2705 2748 519255815 519255772 8.190000e-07 65.8
24 TraesCS1A01G387000 chr3D 96.875 32 0 1 2718 2748 313714176 313714145 6.000000e-03 52.8
25 TraesCS1A01G387000 chr6B 89.764 254 9 3 18 254 67469935 67470188 3.430000e-80 309.0
26 TraesCS1A01G387000 chr6B 73.647 425 78 24 3082 3491 57457020 57456615 2.210000e-27 134.0
27 TraesCS1A01G387000 chr4D 86.694 248 3 4 18 256 112103676 112103902 7.570000e-62 248.0
28 TraesCS1A01G387000 chr4D 79.018 224 43 3 374 597 397387255 397387036 2.200000e-32 150.0
29 TraesCS1A01G387000 chr4D 87.778 90 8 1 263 352 504038456 504038542 6.240000e-18 102.0
30 TraesCS1A01G387000 chr4D 81.250 112 16 5 2062 2170 469615212 469615103 6.280000e-13 86.1
31 TraesCS1A01G387000 chr4D 77.483 151 29 5 2623 2772 489752076 489751930 6.280000e-13 86.1
32 TraesCS1A01G387000 chr2A 84.337 249 9 6 18 257 9321821 9321594 2.140000e-52 217.0
33 TraesCS1A01G387000 chr3B 80.658 243 45 2 373 615 259453177 259452937 1.670000e-43 187.0
34 TraesCS1A01G387000 chr3B 78.027 223 40 8 375 594 444063007 444063223 7.960000e-27 132.0
35 TraesCS1A01G387000 chr3B 80.000 185 27 8 2572 2751 596975595 596975416 1.030000e-25 128.0
36 TraesCS1A01G387000 chr3B 88.571 70 6 2 276 344 8347783 8347715 2.260000e-12 84.2
37 TraesCS1A01G387000 chr3B 79.339 121 20 5 2055 2172 167110136 167110018 2.920000e-11 80.5
38 TraesCS1A01G387000 chr3A 89.720 107 8 2 152 257 714934211 714934107 2.210000e-27 134.0
39 TraesCS1A01G387000 chr2B 89.524 105 8 2 152 255 757883225 757883123 2.860000e-26 130.0
40 TraesCS1A01G387000 chr2B 87.963 108 10 2 152 258 757895636 757895531 1.330000e-24 124.0
41 TraesCS1A01G387000 chr4B 79.487 195 28 5 2554 2743 619761627 619761814 1.030000e-25 128.0
42 TraesCS1A01G387000 chr4B 83.168 101 17 0 2073 2173 218275360 218275260 3.760000e-15 93.5
43 TraesCS1A01G387000 chr4B 91.071 56 4 1 3082 3137 612202742 612202688 1.360000e-09 75.0
44 TraesCS1A01G387000 chr7B 83.333 126 13 7 2690 2811 371022343 371022464 3.730000e-20 110.0
45 TraesCS1A01G387000 chr7B 74.905 263 43 17 2548 2802 103943714 103943467 8.070000e-17 99.0
46 TraesCS1A01G387000 chr7B 80.870 115 17 4 2571 2681 411503724 411503837 6.280000e-13 86.1
47 TraesCS1A01G387000 chr7A 76.371 237 36 13 2547 2778 138531178 138530957 3.730000e-20 110.0
48 TraesCS1A01G387000 chr5D 87.640 89 9 2 257 344 345843829 345843916 6.240000e-18 102.0
49 TraesCS1A01G387000 chr5D 81.818 99 16 2 2073 2170 400010926 400011023 8.130000e-12 82.4
50 TraesCS1A01G387000 chr5D 82.979 94 11 2 2548 2636 382945207 382945300 2.920000e-11 80.5
51 TraesCS1A01G387000 chr2D 82.353 119 18 3 2055 2171 531938088 531937971 2.240000e-17 100.0
52 TraesCS1A01G387000 chr6A 85.417 96 5 5 152 246 441443768 441443855 1.350000e-14 91.6
53 TraesCS1A01G387000 chr7D 80.508 118 20 3 2055 2170 50726729 50726613 1.750000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G387000 chr1A 555816510 555820042 3532 False 6525.000 6525 100.00000 1 3533 1 chr1A.!!$F1 3532
1 TraesCS1A01G387000 chr1D 463855915 463858841 2926 False 1021.500 1783 91.40975 374 3531 4 chr1D.!!$F1 3157
2 TraesCS1A01G387000 chr1B 639004350 639006928 2578 False 707.525 1338 88.55975 793 3533 4 chr1B.!!$F1 2740
3 TraesCS1A01G387000 chr5B 228169994 228170815 821 False 354.500 455 83.75450 1009 1766 2 chr5B.!!$F1 757
4 TraesCS1A01G387000 chrUn 306016593 306017424 831 False 355.000 453 85.03550 1028 1766 2 chrUn.!!$F2 738
5 TraesCS1A01G387000 chr5A 277968239 277969073 834 False 352.500 453 85.10250 1028 1764 2 chr5A.!!$F1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
283 284 0.040157 CTTGCTTTGTTGCAGCGCTA 60.040 50.000 10.99 0.0 44.27 4.26 F
286 287 0.109597 GCTTTGTTGCAGCGCTACAT 60.110 50.000 10.99 0.0 42.77 2.29 F
468 469 0.179097 GTTCTCCTCCGAGTCCATGC 60.179 60.000 0.00 0.0 37.40 4.06 F
761 793 0.801251 AGCAGAGCAGTCGCAAAATC 59.199 50.000 0.00 0.0 42.27 2.17 F
764 796 1.060266 CAGAGCAGTCGCAAAATCTCG 59.940 52.381 0.00 0.0 42.27 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 2199 0.036388 TGAAAAGCGGCCCTCTAGTG 60.036 55.000 0.00 0.0 0.00 2.74 R
2012 2202 1.742411 CGAATGAAAAGCGGCCCTCTA 60.742 52.381 0.00 0.0 0.00 2.43 R
2346 2541 0.878523 CAGACGCCGAGACCAAAACA 60.879 55.000 0.00 0.0 0.00 2.83 R
2405 2600 1.067635 GCAATTCCATGGTTTCAGCGT 60.068 47.619 12.58 0.0 0.00 5.07 R
2642 2840 4.671377 CATCCAACGGTATTGATTTGGTG 58.329 43.478 0.00 0.0 39.69 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.941664 CCACATAAACATCTAAGAATCATTGAC 57.058 33.333 0.00 0.00 0.00 3.18
36 37 9.911788 ATCTAAGAATCATTGACTAAACATGGT 57.088 29.630 0.00 0.00 0.00 3.55
37 38 9.166173 TCTAAGAATCATTGACTAAACATGGTG 57.834 33.333 0.00 0.00 0.00 4.17
38 39 6.199937 AGAATCATTGACTAAACATGGTGC 57.800 37.500 0.00 0.00 0.00 5.01
39 40 5.711506 AGAATCATTGACTAAACATGGTGCA 59.288 36.000 0.00 0.00 0.00 4.57
40 41 6.379133 AGAATCATTGACTAAACATGGTGCAT 59.621 34.615 0.00 0.00 0.00 3.96
41 42 5.981088 TCATTGACTAAACATGGTGCATT 57.019 34.783 0.00 0.00 0.00 3.56
42 43 7.643569 ATCATTGACTAAACATGGTGCATTA 57.356 32.000 0.00 0.00 0.00 1.90
43 44 7.087409 TCATTGACTAAACATGGTGCATTAG 57.913 36.000 0.00 0.00 0.00 1.73
44 45 4.963276 TGACTAAACATGGTGCATTAGC 57.037 40.909 0.00 0.00 42.57 3.09
45 46 3.694072 TGACTAAACATGGTGCATTAGCC 59.306 43.478 0.00 0.00 41.13 3.93
46 47 3.694072 GACTAAACATGGTGCATTAGCCA 59.306 43.478 0.00 0.00 41.13 4.75
47 48 3.443681 ACTAAACATGGTGCATTAGCCAC 59.556 43.478 0.00 0.00 41.13 5.01
48 49 1.185315 AACATGGTGCATTAGCCACC 58.815 50.000 0.00 3.70 41.13 4.61
49 50 0.684153 ACATGGTGCATTAGCCACCC 60.684 55.000 7.98 0.00 39.60 4.61
50 51 0.683828 CATGGTGCATTAGCCACCCA 60.684 55.000 7.98 0.00 39.60 4.51
51 52 0.396139 ATGGTGCATTAGCCACCCAG 60.396 55.000 7.98 0.00 39.60 4.45
52 53 1.754234 GGTGCATTAGCCACCCAGG 60.754 63.158 0.00 0.00 41.13 4.45
69 70 3.723348 GCCCTTGCGTGGACGAAC 61.723 66.667 2.73 0.00 43.02 3.95
70 71 2.280524 CCCTTGCGTGGACGAACA 60.281 61.111 2.73 0.00 43.02 3.18
71 72 1.671054 CCCTTGCGTGGACGAACAT 60.671 57.895 2.73 0.00 43.02 2.71
72 73 1.635663 CCCTTGCGTGGACGAACATC 61.636 60.000 2.73 0.00 43.02 3.06
73 74 0.670546 CCTTGCGTGGACGAACATCT 60.671 55.000 2.73 0.00 43.02 2.90
74 75 1.148310 CTTGCGTGGACGAACATCTT 58.852 50.000 2.73 0.00 43.02 2.40
75 76 0.865111 TTGCGTGGACGAACATCTTG 59.135 50.000 2.73 0.00 43.02 3.02
76 77 0.948623 TGCGTGGACGAACATCTTGG 60.949 55.000 2.73 0.00 43.02 3.61
77 78 0.949105 GCGTGGACGAACATCTTGGT 60.949 55.000 2.73 0.00 43.02 3.67
78 79 1.068474 CGTGGACGAACATCTTGGTC 58.932 55.000 0.00 0.00 43.02 4.02
80 81 3.154589 GGACGAACATCTTGGTCCC 57.845 57.895 3.89 0.00 45.27 4.46
81 82 0.323629 GGACGAACATCTTGGTCCCA 59.676 55.000 3.89 0.00 45.27 4.37
82 83 1.065418 GGACGAACATCTTGGTCCCAT 60.065 52.381 3.89 0.00 45.27 4.00
83 84 2.009774 GACGAACATCTTGGTCCCATG 58.990 52.381 0.00 0.00 27.88 3.66
84 85 1.351017 ACGAACATCTTGGTCCCATGT 59.649 47.619 0.00 0.00 27.88 3.21
85 86 1.739466 CGAACATCTTGGTCCCATGTG 59.261 52.381 0.00 1.37 27.88 3.21
86 87 2.615240 CGAACATCTTGGTCCCATGTGA 60.615 50.000 0.00 0.00 27.88 3.58
87 88 2.795231 ACATCTTGGTCCCATGTGAG 57.205 50.000 0.00 0.00 0.00 3.51
88 89 1.283029 ACATCTTGGTCCCATGTGAGG 59.717 52.381 0.00 0.00 0.00 3.86
89 90 1.283029 CATCTTGGTCCCATGTGAGGT 59.717 52.381 0.00 0.00 0.00 3.85
90 91 0.984230 TCTTGGTCCCATGTGAGGTC 59.016 55.000 0.00 0.00 0.00 3.85
91 92 0.692476 CTTGGTCCCATGTGAGGTCA 59.308 55.000 0.00 0.00 0.00 4.02
92 93 1.073763 CTTGGTCCCATGTGAGGTCAA 59.926 52.381 0.00 0.00 0.00 3.18
93 94 1.144691 TGGTCCCATGTGAGGTCAAA 58.855 50.000 0.00 0.00 0.00 2.69
94 95 1.710244 TGGTCCCATGTGAGGTCAAAT 59.290 47.619 0.00 0.00 0.00 2.32
95 96 2.290896 TGGTCCCATGTGAGGTCAAATC 60.291 50.000 0.00 0.00 0.00 2.17
96 97 2.290896 GGTCCCATGTGAGGTCAAATCA 60.291 50.000 0.00 0.00 0.00 2.57
97 98 3.012518 GTCCCATGTGAGGTCAAATCAG 58.987 50.000 0.00 0.00 0.00 2.90
98 99 1.747355 CCCATGTGAGGTCAAATCAGC 59.253 52.381 0.00 0.00 0.00 4.26
99 100 2.619849 CCCATGTGAGGTCAAATCAGCT 60.620 50.000 0.00 0.00 0.00 4.24
100 101 2.422479 CCATGTGAGGTCAAATCAGCTG 59.578 50.000 7.63 7.63 0.00 4.24
101 102 2.189594 TGTGAGGTCAAATCAGCTGG 57.810 50.000 15.13 0.00 0.00 4.85
102 103 1.699083 TGTGAGGTCAAATCAGCTGGA 59.301 47.619 15.13 0.00 0.00 3.86
103 104 2.106338 TGTGAGGTCAAATCAGCTGGAA 59.894 45.455 15.13 0.00 0.00 3.53
104 105 3.245016 TGTGAGGTCAAATCAGCTGGAAT 60.245 43.478 15.13 0.00 0.00 3.01
105 106 4.019411 TGTGAGGTCAAATCAGCTGGAATA 60.019 41.667 15.13 0.00 0.00 1.75
106 107 4.333926 GTGAGGTCAAATCAGCTGGAATAC 59.666 45.833 15.13 6.26 0.00 1.89
107 108 3.535561 AGGTCAAATCAGCTGGAATACG 58.464 45.455 15.13 0.00 0.00 3.06
108 109 2.614057 GGTCAAATCAGCTGGAATACGG 59.386 50.000 15.13 0.00 0.00 4.02
119 120 4.848562 CTGGAATACGGCTGACTATACA 57.151 45.455 0.00 0.00 0.00 2.29
120 121 5.196341 CTGGAATACGGCTGACTATACAA 57.804 43.478 0.00 0.00 0.00 2.41
121 122 5.597806 CTGGAATACGGCTGACTATACAAA 58.402 41.667 0.00 0.00 0.00 2.83
122 123 5.353938 TGGAATACGGCTGACTATACAAAC 58.646 41.667 0.00 0.00 0.00 2.93
123 124 4.443394 GGAATACGGCTGACTATACAAACG 59.557 45.833 0.00 0.00 0.00 3.60
124 125 2.288961 ACGGCTGACTATACAAACGG 57.711 50.000 0.00 0.00 0.00 4.44
125 126 1.134907 ACGGCTGACTATACAAACGGG 60.135 52.381 0.00 0.00 0.00 5.28
126 127 1.296727 GGCTGACTATACAAACGGGC 58.703 55.000 0.00 0.00 0.00 6.13
127 128 0.928229 GCTGACTATACAAACGGGCG 59.072 55.000 0.00 0.00 0.00 6.13
128 129 1.470285 GCTGACTATACAAACGGGCGA 60.470 52.381 0.00 0.00 0.00 5.54
129 130 2.883574 CTGACTATACAAACGGGCGAA 58.116 47.619 0.00 0.00 0.00 4.70
130 131 2.601763 CTGACTATACAAACGGGCGAAC 59.398 50.000 0.00 0.00 0.00 3.95
131 132 2.231964 TGACTATACAAACGGGCGAACT 59.768 45.455 0.00 0.00 0.00 3.01
132 133 2.856557 GACTATACAAACGGGCGAACTC 59.143 50.000 0.00 0.00 0.00 3.01
133 134 2.494870 ACTATACAAACGGGCGAACTCT 59.505 45.455 0.00 0.00 0.00 3.24
134 135 2.005971 ATACAAACGGGCGAACTCTC 57.994 50.000 0.00 0.00 0.00 3.20
135 136 0.963962 TACAAACGGGCGAACTCTCT 59.036 50.000 0.00 0.00 0.00 3.10
136 137 0.963962 ACAAACGGGCGAACTCTCTA 59.036 50.000 0.00 0.00 0.00 2.43
137 138 1.067776 ACAAACGGGCGAACTCTCTAG 60.068 52.381 0.00 0.00 0.00 2.43
138 139 1.067776 CAAACGGGCGAACTCTCTAGT 60.068 52.381 0.00 0.00 37.65 2.57
139 140 2.119801 AACGGGCGAACTCTCTAGTA 57.880 50.000 0.00 0.00 33.75 1.82
140 141 2.345124 ACGGGCGAACTCTCTAGTAT 57.655 50.000 0.00 0.00 33.75 2.12
141 142 1.948145 ACGGGCGAACTCTCTAGTATG 59.052 52.381 0.00 0.00 33.75 2.39
142 143 2.219458 CGGGCGAACTCTCTAGTATGA 58.781 52.381 0.00 0.00 33.75 2.15
143 144 2.814919 CGGGCGAACTCTCTAGTATGAT 59.185 50.000 0.00 0.00 33.75 2.45
144 145 3.365465 CGGGCGAACTCTCTAGTATGATG 60.365 52.174 0.00 0.00 33.75 3.07
145 146 3.057174 GGGCGAACTCTCTAGTATGATGG 60.057 52.174 0.00 0.00 33.75 3.51
146 147 3.821600 GGCGAACTCTCTAGTATGATGGA 59.178 47.826 0.00 0.00 33.75 3.41
147 148 4.278669 GGCGAACTCTCTAGTATGATGGAA 59.721 45.833 0.00 0.00 33.75 3.53
148 149 5.047660 GGCGAACTCTCTAGTATGATGGAAT 60.048 44.000 0.00 0.00 33.75 3.01
149 150 6.151312 GGCGAACTCTCTAGTATGATGGAATA 59.849 42.308 0.00 0.00 33.75 1.75
150 151 7.024768 GCGAACTCTCTAGTATGATGGAATAC 58.975 42.308 0.00 0.00 33.75 1.89
151 152 7.531716 CGAACTCTCTAGTATGATGGAATACC 58.468 42.308 0.00 0.00 33.75 2.73
152 153 7.175119 CGAACTCTCTAGTATGATGGAATACCA 59.825 40.741 0.00 0.00 42.39 3.25
153 154 8.964533 AACTCTCTAGTATGATGGAATACCAT 57.035 34.615 1.14 1.14 46.79 3.55
154 155 8.359875 ACTCTCTAGTATGATGGAATACCATG 57.640 38.462 6.48 0.00 44.77 3.66
155 156 7.093552 ACTCTCTAGTATGATGGAATACCATGC 60.094 40.741 6.48 0.31 44.77 4.06
163 164 3.929955 TGGAATACCATGCATGACTGA 57.070 42.857 28.31 9.99 41.77 3.41
164 165 3.544684 TGGAATACCATGCATGACTGAC 58.455 45.455 28.31 14.81 41.77 3.51
165 166 3.054508 TGGAATACCATGCATGACTGACA 60.055 43.478 28.31 15.46 41.77 3.58
166 167 3.313526 GGAATACCATGCATGACTGACAC 59.686 47.826 28.31 11.88 35.97 3.67
167 168 3.632643 ATACCATGCATGACTGACACA 57.367 42.857 28.31 3.90 0.00 3.72
168 169 1.817357 ACCATGCATGACTGACACAG 58.183 50.000 28.31 10.05 37.52 3.66
169 170 1.348696 ACCATGCATGACTGACACAGA 59.651 47.619 28.31 0.00 35.18 3.41
170 171 2.026542 ACCATGCATGACTGACACAGAT 60.027 45.455 28.31 0.00 35.18 2.90
171 172 2.354821 CCATGCATGACTGACACAGATG 59.645 50.000 28.31 2.27 35.18 2.90
172 173 2.845363 TGCATGACTGACACAGATGT 57.155 45.000 0.00 0.00 43.71 3.06
181 182 4.749323 CACAGATGTGGGCCATGT 57.251 55.556 10.70 7.17 42.10 3.21
182 183 2.965805 CACAGATGTGGGCCATGTT 58.034 52.632 10.70 0.00 42.10 2.71
183 184 0.528924 CACAGATGTGGGCCATGTTG 59.471 55.000 10.70 9.08 42.10 3.33
184 185 0.405198 ACAGATGTGGGCCATGTTGA 59.595 50.000 10.70 0.00 32.56 3.18
185 186 1.006281 ACAGATGTGGGCCATGTTGAT 59.994 47.619 10.70 0.00 32.56 2.57
186 187 2.104967 CAGATGTGGGCCATGTTGATT 58.895 47.619 10.70 0.00 32.56 2.57
187 188 2.498481 CAGATGTGGGCCATGTTGATTT 59.502 45.455 10.70 0.00 32.56 2.17
188 189 2.498481 AGATGTGGGCCATGTTGATTTG 59.502 45.455 10.70 0.00 32.56 2.32
189 190 2.006805 TGTGGGCCATGTTGATTTGA 57.993 45.000 10.70 0.00 0.00 2.69
190 191 1.617850 TGTGGGCCATGTTGATTTGAC 59.382 47.619 10.70 0.00 0.00 3.18
191 192 1.617850 GTGGGCCATGTTGATTTGACA 59.382 47.619 10.70 0.00 0.00 3.58
192 193 2.036992 GTGGGCCATGTTGATTTGACAA 59.963 45.455 10.70 0.00 0.00 3.18
193 194 2.036992 TGGGCCATGTTGATTTGACAAC 59.963 45.455 0.00 0.00 46.83 3.32
200 201 3.017265 GTTGATTTGACAACAGGCTGG 57.983 47.619 20.34 4.16 46.19 4.85
201 202 2.622942 GTTGATTTGACAACAGGCTGGA 59.377 45.455 20.34 0.00 46.19 3.86
202 203 3.159213 TGATTTGACAACAGGCTGGAT 57.841 42.857 20.34 4.15 0.00 3.41
203 204 2.821378 TGATTTGACAACAGGCTGGATG 59.179 45.455 20.34 18.79 0.00 3.51
204 205 2.363306 TTTGACAACAGGCTGGATGT 57.637 45.000 22.89 22.89 0.00 3.06
205 206 1.608055 TTGACAACAGGCTGGATGTG 58.392 50.000 26.27 17.14 0.00 3.21
206 207 0.890542 TGACAACAGGCTGGATGTGC 60.891 55.000 26.27 18.79 0.00 4.57
207 208 1.915614 GACAACAGGCTGGATGTGCG 61.916 60.000 26.27 7.49 0.00 5.34
208 209 2.360350 AACAGGCTGGATGTGCGG 60.360 61.111 20.34 0.00 0.00 5.69
209 210 3.196207 AACAGGCTGGATGTGCGGT 62.196 57.895 20.34 0.00 0.00 5.68
210 211 3.129502 CAGGCTGGATGTGCGGTG 61.130 66.667 6.61 0.00 0.00 4.94
214 215 4.758251 CTGGATGTGCGGTGCGGA 62.758 66.667 0.00 0.00 0.00 5.54
215 216 4.094646 TGGATGTGCGGTGCGGAT 62.095 61.111 0.00 0.00 0.00 4.18
216 217 2.108157 GGATGTGCGGTGCGGATA 59.892 61.111 0.00 0.00 0.00 2.59
217 218 2.244651 GGATGTGCGGTGCGGATAC 61.245 63.158 0.00 0.00 0.00 2.24
218 219 1.520564 GATGTGCGGTGCGGATACA 60.521 57.895 0.00 0.00 0.00 2.29
219 220 1.490693 GATGTGCGGTGCGGATACAG 61.491 60.000 0.00 0.00 0.00 2.74
220 221 2.890474 GTGCGGTGCGGATACAGG 60.890 66.667 0.00 0.00 0.00 4.00
221 222 3.387091 TGCGGTGCGGATACAGGT 61.387 61.111 0.00 0.00 0.00 4.00
222 223 2.125269 GCGGTGCGGATACAGGTT 60.125 61.111 0.00 0.00 0.00 3.50
223 224 2.461110 GCGGTGCGGATACAGGTTG 61.461 63.158 0.00 0.00 0.00 3.77
224 225 2.461110 CGGTGCGGATACAGGTTGC 61.461 63.158 0.00 0.00 0.00 4.17
225 226 2.461110 GGTGCGGATACAGGTTGCG 61.461 63.158 0.00 0.00 0.00 4.85
227 228 3.925238 GCGGATACAGGTTGCGCG 61.925 66.667 0.00 0.00 43.73 6.86
228 229 3.925238 CGGATACAGGTTGCGCGC 61.925 66.667 27.26 27.26 0.00 6.86
229 230 3.925238 GGATACAGGTTGCGCGCG 61.925 66.667 28.44 28.44 0.00 6.86
230 231 4.575245 GATACAGGTTGCGCGCGC 62.575 66.667 45.02 45.02 42.35 6.86
240 241 2.840016 GCGCGCGCATAGAGTTAG 59.160 61.111 46.11 12.36 41.49 2.34
241 242 2.649257 GCGCGCGCATAGAGTTAGG 61.649 63.158 46.11 11.55 41.49 2.69
242 243 1.008881 CGCGCGCATAGAGTTAGGA 60.009 57.895 32.61 0.00 0.00 2.94
243 244 0.387367 CGCGCGCATAGAGTTAGGAT 60.387 55.000 32.61 0.00 0.00 3.24
244 245 1.135774 CGCGCGCATAGAGTTAGGATA 60.136 52.381 32.61 0.00 0.00 2.59
245 246 2.667448 CGCGCGCATAGAGTTAGGATAA 60.667 50.000 32.61 0.00 0.00 1.75
246 247 3.314553 GCGCGCATAGAGTTAGGATAAA 58.685 45.455 29.10 0.00 0.00 1.40
247 248 3.927142 GCGCGCATAGAGTTAGGATAAAT 59.073 43.478 29.10 0.00 0.00 1.40
248 249 4.031878 GCGCGCATAGAGTTAGGATAAATC 59.968 45.833 29.10 0.00 0.00 2.17
258 259 3.300711 GGATAAATCCACGTCCCGG 57.699 57.895 4.04 0.00 46.38 5.73
259 260 0.883370 GGATAAATCCACGTCCCGGC 60.883 60.000 0.00 0.00 46.38 6.13
260 261 0.179067 GATAAATCCACGTCCCGGCA 60.179 55.000 0.00 0.00 0.00 5.69
261 262 0.472471 ATAAATCCACGTCCCGGCAT 59.528 50.000 0.00 0.00 0.00 4.40
262 263 0.179067 TAAATCCACGTCCCGGCATC 60.179 55.000 0.00 0.00 0.00 3.91
263 264 3.733344 AATCCACGTCCCGGCATCG 62.733 63.158 0.00 2.39 0.00 3.84
277 278 3.182538 CATCGCTTGCTTTGTTGCA 57.817 47.368 0.00 0.00 41.65 4.08
278 279 1.057636 CATCGCTTGCTTTGTTGCAG 58.942 50.000 0.00 0.00 44.27 4.41
279 280 0.665369 ATCGCTTGCTTTGTTGCAGC 60.665 50.000 0.00 0.00 44.27 5.25
280 281 2.641783 CGCTTGCTTTGTTGCAGCG 61.642 57.895 14.58 14.58 45.56 5.18
281 282 2.935446 GCTTGCTTTGTTGCAGCGC 61.935 57.895 0.00 0.00 44.27 5.92
282 283 1.299620 CTTGCTTTGTTGCAGCGCT 60.300 52.632 2.64 2.64 44.27 5.92
283 284 0.040157 CTTGCTTTGTTGCAGCGCTA 60.040 50.000 10.99 0.00 44.27 4.26
284 285 0.317770 TTGCTTTGTTGCAGCGCTAC 60.318 50.000 10.99 4.60 44.27 3.58
285 286 1.282570 GCTTTGTTGCAGCGCTACA 59.717 52.632 10.99 8.37 41.76 2.74
286 287 0.109597 GCTTTGTTGCAGCGCTACAT 60.110 50.000 10.99 0.00 42.77 2.29
287 288 1.130373 GCTTTGTTGCAGCGCTACATA 59.870 47.619 10.99 5.64 42.77 2.29
288 289 2.223340 GCTTTGTTGCAGCGCTACATAT 60.223 45.455 10.99 0.00 42.77 1.78
289 290 3.002246 GCTTTGTTGCAGCGCTACATATA 59.998 43.478 10.99 0.00 42.77 0.86
290 291 4.766007 CTTTGTTGCAGCGCTACATATAG 58.234 43.478 10.99 5.73 42.77 1.31
291 292 3.452755 TGTTGCAGCGCTACATATAGT 57.547 42.857 10.99 0.00 39.07 2.12
292 293 3.792401 TGTTGCAGCGCTACATATAGTT 58.208 40.909 10.99 0.00 39.07 2.24
293 294 4.939271 TGTTGCAGCGCTACATATAGTTA 58.061 39.130 10.99 0.00 39.07 2.24
294 295 4.982295 TGTTGCAGCGCTACATATAGTTAG 59.018 41.667 10.99 0.00 39.07 2.34
295 296 3.575630 TGCAGCGCTACATATAGTTAGC 58.424 45.455 10.99 5.13 0.00 3.09
296 297 3.005367 TGCAGCGCTACATATAGTTAGCA 59.995 43.478 10.99 8.24 35.44 3.49
297 298 3.610242 GCAGCGCTACATATAGTTAGCAG 59.390 47.826 10.99 0.00 35.44 4.24
298 299 4.799678 CAGCGCTACATATAGTTAGCAGT 58.200 43.478 10.99 0.68 35.44 4.40
299 300 5.619309 GCAGCGCTACATATAGTTAGCAGTA 60.619 44.000 10.99 0.00 35.44 2.74
300 301 6.024664 CAGCGCTACATATAGTTAGCAGTAG 58.975 44.000 10.99 0.00 35.44 2.57
301 302 4.794246 GCGCTACATATAGTTAGCAGTAGC 59.206 45.833 0.00 11.24 46.53 3.58
311 312 2.813908 GCAGTAGCGTTGGTCCGG 60.814 66.667 0.00 0.00 0.00 5.14
312 313 2.125673 CAGTAGCGTTGGTCCGGG 60.126 66.667 0.00 0.00 0.00 5.73
313 314 4.078516 AGTAGCGTTGGTCCGGGC 62.079 66.667 0.00 0.00 0.00 6.13
314 315 4.382320 GTAGCGTTGGTCCGGGCA 62.382 66.667 9.07 0.00 0.00 5.36
315 316 4.077184 TAGCGTTGGTCCGGGCAG 62.077 66.667 9.07 0.00 0.00 4.85
331 332 3.122150 CAGCGCTACTGCTACAACA 57.878 52.632 10.99 0.00 45.23 3.33
332 333 1.428448 CAGCGCTACTGCTACAACAA 58.572 50.000 10.99 0.00 45.23 2.83
333 334 1.126846 CAGCGCTACTGCTACAACAAC 59.873 52.381 10.99 0.00 45.23 3.32
334 335 1.000955 AGCGCTACTGCTACAACAACT 59.999 47.619 8.99 0.00 45.14 3.16
335 336 1.798813 GCGCTACTGCTACAACAACTT 59.201 47.619 0.00 0.00 36.97 2.66
336 337 2.991190 GCGCTACTGCTACAACAACTTA 59.009 45.455 0.00 0.00 36.97 2.24
337 338 3.060895 GCGCTACTGCTACAACAACTTAG 59.939 47.826 0.00 0.00 36.97 2.18
338 339 3.060895 CGCTACTGCTACAACAACTTAGC 59.939 47.826 0.00 0.00 41.05 3.09
339 340 4.246458 GCTACTGCTACAACAACTTAGCT 58.754 43.478 0.00 0.00 41.21 3.32
340 341 4.092091 GCTACTGCTACAACAACTTAGCTG 59.908 45.833 0.00 6.09 42.74 4.24
341 342 4.073293 ACTGCTACAACAACTTAGCTGT 57.927 40.909 0.00 7.17 44.22 4.40
342 343 5.209818 ACTGCTACAACAACTTAGCTGTA 57.790 39.130 10.34 0.00 45.98 2.74
343 344 5.230942 ACTGCTACAACAACTTAGCTGTAG 58.769 41.667 10.34 0.00 45.98 2.74
355 356 2.869354 GCTGTAGCGCGTTAGTAGG 58.131 57.895 8.43 0.00 0.00 3.18
356 357 1.207377 GCTGTAGCGCGTTAGTAGGC 61.207 60.000 8.43 4.41 0.00 3.93
357 358 0.381089 CTGTAGCGCGTTAGTAGGCT 59.619 55.000 8.43 0.00 39.44 4.58
358 359 0.813184 TGTAGCGCGTTAGTAGGCTT 59.187 50.000 8.43 0.00 36.97 4.35
359 360 1.203052 TGTAGCGCGTTAGTAGGCTTT 59.797 47.619 8.43 0.00 36.97 3.51
360 361 1.851053 GTAGCGCGTTAGTAGGCTTTC 59.149 52.381 8.43 0.00 36.97 2.62
361 362 0.531200 AGCGCGTTAGTAGGCTTTCT 59.469 50.000 8.43 0.00 33.08 2.52
362 363 0.922032 GCGCGTTAGTAGGCTTTCTC 59.078 55.000 8.43 0.00 33.08 2.87
363 364 1.557651 CGCGTTAGTAGGCTTTCTCC 58.442 55.000 0.00 0.00 33.08 3.71
364 365 1.134560 CGCGTTAGTAGGCTTTCTCCT 59.865 52.381 0.00 0.00 40.21 3.69
365 366 2.357009 CGCGTTAGTAGGCTTTCTCCTA 59.643 50.000 0.00 0.00 37.66 2.94
366 367 3.548415 CGCGTTAGTAGGCTTTCTCCTAG 60.548 52.174 0.00 0.00 39.25 3.02
367 368 3.380954 GCGTTAGTAGGCTTTCTCCTAGT 59.619 47.826 0.00 3.07 43.10 2.57
368 369 4.578105 GCGTTAGTAGGCTTTCTCCTAGTA 59.422 45.833 0.00 1.36 41.40 1.82
369 370 5.277925 GCGTTAGTAGGCTTTCTCCTAGTAG 60.278 48.000 0.00 0.00 42.48 2.57
370 371 5.821995 CGTTAGTAGGCTTTCTCCTAGTAGT 59.178 44.000 0.00 0.00 42.48 2.73
371 372 6.989169 CGTTAGTAGGCTTTCTCCTAGTAGTA 59.011 42.308 0.00 0.00 42.48 1.82
372 373 7.042119 CGTTAGTAGGCTTTCTCCTAGTAGTAC 60.042 44.444 0.00 0.00 42.48 2.73
373 374 5.367302 AGTAGGCTTTCTCCTAGTAGTACG 58.633 45.833 0.00 0.00 39.85 3.67
374 375 4.500499 AGGCTTTCTCCTAGTAGTACGA 57.500 45.455 0.00 0.00 33.95 3.43
375 376 5.051409 AGGCTTTCTCCTAGTAGTACGAT 57.949 43.478 0.00 0.00 33.95 3.73
376 377 5.447757 AGGCTTTCTCCTAGTAGTACGATT 58.552 41.667 0.00 0.00 33.95 3.34
377 378 5.892686 AGGCTTTCTCCTAGTAGTACGATTT 59.107 40.000 0.00 0.00 33.95 2.17
378 379 6.380560 AGGCTTTCTCCTAGTAGTACGATTTT 59.619 38.462 0.00 0.00 33.95 1.82
379 380 6.476053 GGCTTTCTCCTAGTAGTACGATTTTG 59.524 42.308 0.00 0.00 0.00 2.44
410 411 2.026978 CGAGTTGATCTTTCGAACGAGC 59.973 50.000 12.47 12.47 36.49 5.03
411 412 2.987149 GAGTTGATCTTTCGAACGAGCA 59.013 45.455 17.37 17.37 0.00 4.26
413 414 3.369147 AGTTGATCTTTCGAACGAGCATG 59.631 43.478 21.10 0.00 0.00 4.06
460 461 3.068691 CGGCAGGTTCTCCTCCGA 61.069 66.667 14.91 0.00 46.88 4.55
468 469 0.179097 GTTCTCCTCCGAGTCCATGC 60.179 60.000 0.00 0.00 37.40 4.06
503 504 1.404851 GGAAGAAGAGAGTGGGCGAAG 60.405 57.143 0.00 0.00 0.00 3.79
528 529 1.879575 ACGGGAATTGGATGGAGAGA 58.120 50.000 0.00 0.00 0.00 3.10
538 539 3.581101 TGGATGGAGAGAGTTGGGATAG 58.419 50.000 0.00 0.00 0.00 2.08
542 543 5.131142 GGATGGAGAGAGTTGGGATAGAAAA 59.869 44.000 0.00 0.00 0.00 2.29
543 544 6.353082 GGATGGAGAGAGTTGGGATAGAAAAA 60.353 42.308 0.00 0.00 0.00 1.94
545 546 5.785423 TGGAGAGAGTTGGGATAGAAAAAGA 59.215 40.000 0.00 0.00 0.00 2.52
549 550 6.728632 AGAGAGTTGGGATAGAAAAAGAGAGT 59.271 38.462 0.00 0.00 0.00 3.24
551 552 6.498651 AGAGTTGGGATAGAAAAAGAGAGTGA 59.501 38.462 0.00 0.00 0.00 3.41
563 564 3.726557 AGAGAGTGATGGATTTTGCCA 57.273 42.857 0.00 0.00 43.23 4.92
576 577 4.215827 GGATTTTGCCATGAAAACATTGCA 59.784 37.500 0.00 0.00 32.42 4.08
581 582 2.481185 GCCATGAAAACATTGCAACCAG 59.519 45.455 0.00 0.00 0.00 4.00
595 596 2.384382 CAACCAGTTACAAAAGCGCAG 58.616 47.619 11.47 0.00 0.00 5.18
634 636 1.068885 GCTCGGATCCTACATGACTCG 60.069 57.143 10.75 0.00 0.00 4.18
646 678 2.232941 ACATGACTCGTATCCGGTTTGT 59.767 45.455 0.00 0.00 33.95 2.83
647 679 2.357327 TGACTCGTATCCGGTTTGTG 57.643 50.000 0.00 0.00 33.95 3.33
649 681 1.203052 GACTCGTATCCGGTTTGTGGA 59.797 52.381 0.00 0.00 40.46 4.02
658 690 3.024547 TCCGGTTTGTGGAAATTTGTGA 58.975 40.909 0.00 0.00 30.98 3.58
659 691 3.639094 TCCGGTTTGTGGAAATTTGTGAT 59.361 39.130 0.00 0.00 30.98 3.06
670 702 6.003326 TGGAAATTTGTGATCTGAACTGCTA 58.997 36.000 0.00 0.00 0.00 3.49
673 705 2.654749 TGTGATCTGAACTGCTACGG 57.345 50.000 0.00 0.00 0.00 4.02
678 710 1.629043 TCTGAACTGCTACGGGAACT 58.371 50.000 0.00 0.00 0.00 3.01
681 713 1.000506 TGAACTGCTACGGGAACTGAC 59.999 52.381 0.00 0.00 38.67 3.51
683 715 1.153823 CTGCTACGGGAACTGACGG 60.154 63.158 0.00 0.00 38.67 4.79
709 741 2.105477 AGATCAGCGCTGGATGGTTTAT 59.895 45.455 35.36 19.62 0.00 1.40
751 783 3.073735 AGGGTCGGAGCAGAGCAG 61.074 66.667 9.66 0.00 40.14 4.24
761 793 0.801251 AGCAGAGCAGTCGCAAAATC 59.199 50.000 0.00 0.00 42.27 2.17
764 796 1.060266 CAGAGCAGTCGCAAAATCTCG 59.940 52.381 0.00 0.00 42.27 4.04
980 1020 2.108168 TCTCCATTAGCTGCCGTAAGT 58.892 47.619 0.00 0.00 0.00 2.24
1266 1330 4.821589 GCCTCCACCGCTTCCTCG 62.822 72.222 0.00 0.00 0.00 4.63
1293 1414 2.094659 CCGCGTCTACAAGCACCAG 61.095 63.158 4.92 0.00 0.00 4.00
1359 1501 1.856265 CGAAGAAGGTGGGCAGCAAC 61.856 60.000 0.00 0.00 0.00 4.17
1390 1532 3.267860 GGCGCGAGAAGATGGCAG 61.268 66.667 12.10 0.00 31.94 4.85
1391 1533 3.934684 GCGCGAGAAGATGGCAGC 61.935 66.667 12.10 0.00 31.94 5.25
1392 1534 2.510012 CGCGAGAAGATGGCAGCA 60.510 61.111 5.19 0.00 31.94 4.41
1621 1778 2.361865 AGCTCGCCTCGGAGTCTT 60.362 61.111 4.02 0.00 36.41 3.01
1836 2022 5.130292 CTTCAGTTTTGCATGAAGGTCAT 57.870 39.130 16.65 0.00 45.61 3.06
1852 2038 4.327680 AGGTCATCAAGGAAGCTTGTTAC 58.672 43.478 2.10 0.00 35.91 2.50
1854 2040 4.393371 GGTCATCAAGGAAGCTTGTTACTC 59.607 45.833 2.10 0.00 35.91 2.59
1855 2041 4.393371 GTCATCAAGGAAGCTTGTTACTCC 59.607 45.833 2.10 0.00 35.91 3.85
1856 2042 3.418684 TCAAGGAAGCTTGTTACTCCC 57.581 47.619 2.10 0.00 35.91 4.30
1857 2043 2.039879 TCAAGGAAGCTTGTTACTCCCC 59.960 50.000 2.10 0.00 35.91 4.81
1858 2044 2.040412 CAAGGAAGCTTGTTACTCCCCT 59.960 50.000 2.10 0.00 0.00 4.79
1859 2045 3.200958 AGGAAGCTTGTTACTCCCCTA 57.799 47.619 2.10 0.00 0.00 3.53
1860 2046 3.108376 AGGAAGCTTGTTACTCCCCTAG 58.892 50.000 2.10 0.00 0.00 3.02
1861 2047 2.838813 GGAAGCTTGTTACTCCCCTAGT 59.161 50.000 2.10 0.00 42.62 2.57
1862 2048 3.369576 GGAAGCTTGTTACTCCCCTAGTG 60.370 52.174 2.10 0.00 39.39 2.74
1863 2049 2.903926 AGCTTGTTACTCCCCTAGTGT 58.096 47.619 0.00 0.00 39.39 3.55
1864 2050 2.832733 AGCTTGTTACTCCCCTAGTGTC 59.167 50.000 0.00 0.00 39.39 3.67
1865 2051 2.565834 GCTTGTTACTCCCCTAGTGTCA 59.434 50.000 0.00 0.00 39.39 3.58
1866 2052 3.007614 GCTTGTTACTCCCCTAGTGTCAA 59.992 47.826 0.00 0.00 39.39 3.18
1867 2053 4.504340 GCTTGTTACTCCCCTAGTGTCAAA 60.504 45.833 0.00 0.00 39.39 2.69
1868 2054 5.617252 CTTGTTACTCCCCTAGTGTCAAAA 58.383 41.667 0.00 0.00 39.39 2.44
1869 2055 5.633655 TGTTACTCCCCTAGTGTCAAAAA 57.366 39.130 0.00 0.00 39.39 1.94
1959 2149 5.611796 CAGTGCTTGCTTGTTATTCTACA 57.388 39.130 0.00 0.00 0.00 2.74
1960 2150 6.187125 CAGTGCTTGCTTGTTATTCTACAT 57.813 37.500 0.00 0.00 0.00 2.29
1961 2151 6.615088 CAGTGCTTGCTTGTTATTCTACATT 58.385 36.000 0.00 0.00 0.00 2.71
1962 2152 6.744537 CAGTGCTTGCTTGTTATTCTACATTC 59.255 38.462 0.00 0.00 0.00 2.67
2009 2199 8.425577 AGTGTTTATATATCAAGTCTGTGTGC 57.574 34.615 0.00 0.00 0.00 4.57
2012 2202 8.040727 TGTTTATATATCAAGTCTGTGTGCACT 58.959 33.333 19.41 0.00 0.00 4.40
2066 2256 6.543100 ACTCTTTTCTATCTACTCGATCCGTT 59.457 38.462 0.00 0.00 33.48 4.44
2106 2296 8.930760 GCAGAAGTGAATATAAGTGGATGTATC 58.069 37.037 0.00 0.00 0.00 2.24
2143 2333 7.706281 ACATTTTGATACAACAATTTTCGCA 57.294 28.000 0.00 0.00 0.00 5.10
2145 2335 8.061268 ACATTTTGATACAACAATTTTCGCAAC 58.939 29.630 0.00 0.00 0.00 4.17
2156 2346 7.763172 ACAATTTTCGCAACAAGTAATTTCA 57.237 28.000 0.00 0.00 0.00 2.69
2161 2351 4.052608 TCGCAACAAGTAATTTCAGACGA 58.947 39.130 0.00 0.00 0.00 4.20
2274 2468 8.447833 TGTTTATTGTTTGTATAGTGTGCTAGC 58.552 33.333 8.10 8.10 0.00 3.42
2346 2541 5.181245 GTGCATGGTTGTAGTGTCTTTACAT 59.819 40.000 0.00 0.00 38.08 2.29
2354 2549 7.415877 GGTTGTAGTGTCTTTACATGTTTTGGT 60.416 37.037 2.30 0.00 38.08 3.67
2360 2555 3.500680 TCTTTACATGTTTTGGTCTCGGC 59.499 43.478 2.30 0.00 0.00 5.54
2383 2578 2.562738 TCTGTCGATGGAGTTGTGTGAT 59.437 45.455 0.00 0.00 0.00 3.06
2384 2579 3.006859 TCTGTCGATGGAGTTGTGTGATT 59.993 43.478 0.00 0.00 0.00 2.57
2398 2593 3.190874 GTGTGATTCCCTTAAGAGCTCG 58.809 50.000 8.37 0.00 0.00 5.03
2405 2600 2.025605 TCCCTTAAGAGCTCGTACTCCA 60.026 50.000 9.02 0.00 37.39 3.86
2432 2627 4.220382 TGAAACCATGGAATTGCTACCAAG 59.780 41.667 21.47 0.00 39.69 3.61
2434 2629 2.738743 CCATGGAATTGCTACCAAGGT 58.261 47.619 5.56 0.00 39.34 3.50
2438 2633 3.838565 TGGAATTGCTACCAAGGTTTCA 58.161 40.909 0.00 0.00 33.80 2.69
2439 2634 4.219115 TGGAATTGCTACCAAGGTTTCAA 58.781 39.130 0.00 2.87 33.80 2.69
2441 2636 5.306678 TGGAATTGCTACCAAGGTTTCAAAT 59.693 36.000 0.00 0.00 33.80 2.32
2443 2638 6.710295 GGAATTGCTACCAAGGTTTCAAATTT 59.290 34.615 0.00 0.00 33.80 1.82
2444 2639 7.095229 GGAATTGCTACCAAGGTTTCAAATTTC 60.095 37.037 0.00 4.56 33.80 2.17
2445 2640 4.865776 TGCTACCAAGGTTTCAAATTTCG 58.134 39.130 0.00 0.00 0.00 3.46
2446 2641 4.580995 TGCTACCAAGGTTTCAAATTTCGA 59.419 37.500 0.00 0.00 0.00 3.71
2449 2644 6.477360 GCTACCAAGGTTTCAAATTTCGAAAA 59.523 34.615 15.66 0.00 34.32 2.29
2450 2645 6.656314 ACCAAGGTTTCAAATTTCGAAAAC 57.344 33.333 15.66 16.71 39.81 2.43
2458 2653 9.767684 GGTTTCAAATTTCGAAAACAAGAAAAT 57.232 25.926 15.66 0.00 39.40 1.82
2468 2663 7.309177 TCGAAAACAAGAAAATTTCACTCACA 58.691 30.769 8.55 0.00 33.68 3.58
2469 2664 7.272515 TCGAAAACAAGAAAATTTCACTCACAC 59.727 33.333 8.55 0.00 33.68 3.82
2471 2666 9.567848 GAAAACAAGAAAATTTCACTCACACTA 57.432 29.630 8.55 0.00 34.12 2.74
2514 2709 9.965824 AAAATTTAGTTCAGACAAATCGACATT 57.034 25.926 0.00 0.00 0.00 2.71
2546 2741 7.964604 TTAATTTGGAATTAAAACAACGGGG 57.035 32.000 3.97 0.00 0.00 5.73
2556 2751 2.305858 AACAACGGGGTACTCTCTCT 57.694 50.000 0.00 0.00 0.00 3.10
2562 2757 5.247792 ACAACGGGGTACTCTCTCTATTTTT 59.752 40.000 0.00 0.00 0.00 1.94
2563 2758 5.340439 ACGGGGTACTCTCTCTATTTTTG 57.660 43.478 0.00 0.00 0.00 2.44
2657 2855 4.757799 TCACAACACCAAATCAATACCG 57.242 40.909 0.00 0.00 0.00 4.02
2660 2858 4.679197 CACAACACCAAATCAATACCGTTG 59.321 41.667 0.00 0.00 38.68 4.10
2772 2970 6.100004 TGAAGCTCGACTTAGGATAAAACTG 58.900 40.000 0.00 0.00 39.29 3.16
2782 2980 7.806180 ACTTAGGATAAAACTGGTATGCAGAT 58.194 34.615 0.00 0.00 0.00 2.90
2928 3128 4.566278 GGGTTAGACGAGGGGTTGTTTATT 60.566 45.833 0.00 0.00 0.00 1.40
3050 3250 5.990996 TGGTCAAATTTTTCCTTGATTGCTC 59.009 36.000 9.06 0.00 0.00 4.26
3069 3269 9.217278 GATTGCTCCTATATAATGCTCATATGG 57.783 37.037 2.13 0.00 0.00 2.74
3163 3365 9.905713 TTCACTTGCTCCATTAATAACTAAGAT 57.094 29.630 0.00 0.00 0.00 2.40
3459 3664 9.532697 GTTCACAATTTGAATAAATGTTCATGC 57.467 29.630 2.79 0.00 46.14 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.911788 ACCATGTTTAGTCAATGATTCTTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
11 12 9.166173 CACCATGTTTAGTCAATGATTCTTAGA 57.834 33.333 0.00 0.00 0.00 2.10
12 13 7.912250 GCACCATGTTTAGTCAATGATTCTTAG 59.088 37.037 0.00 0.00 0.00 2.18
13 14 7.392953 TGCACCATGTTTAGTCAATGATTCTTA 59.607 33.333 0.00 0.00 0.00 2.10
14 15 6.209192 TGCACCATGTTTAGTCAATGATTCTT 59.791 34.615 0.00 0.00 0.00 2.52
15 16 5.711506 TGCACCATGTTTAGTCAATGATTCT 59.288 36.000 0.00 0.00 0.00 2.40
16 17 5.953183 TGCACCATGTTTAGTCAATGATTC 58.047 37.500 0.00 0.00 0.00 2.52
17 18 5.981088 TGCACCATGTTTAGTCAATGATT 57.019 34.783 0.00 0.00 0.00 2.57
18 19 6.534475 AATGCACCATGTTTAGTCAATGAT 57.466 33.333 0.00 0.00 0.00 2.45
19 20 5.981088 AATGCACCATGTTTAGTCAATGA 57.019 34.783 0.00 0.00 0.00 2.57
20 21 5.745294 GCTAATGCACCATGTTTAGTCAATG 59.255 40.000 0.00 0.00 39.41 2.82
21 22 5.163519 GGCTAATGCACCATGTTTAGTCAAT 60.164 40.000 2.93 0.00 41.91 2.57
22 23 4.157656 GGCTAATGCACCATGTTTAGTCAA 59.842 41.667 2.93 0.00 41.91 3.18
23 24 3.694072 GGCTAATGCACCATGTTTAGTCA 59.306 43.478 2.93 0.00 41.91 3.41
24 25 3.694072 TGGCTAATGCACCATGTTTAGTC 59.306 43.478 0.00 0.00 41.91 2.59
25 26 3.443681 GTGGCTAATGCACCATGTTTAGT 59.556 43.478 0.00 0.00 41.91 2.24
26 27 3.181487 GGTGGCTAATGCACCATGTTTAG 60.181 47.826 0.00 0.00 41.91 1.85
27 28 2.757868 GGTGGCTAATGCACCATGTTTA 59.242 45.455 0.00 0.00 41.91 2.01
28 29 1.550072 GGTGGCTAATGCACCATGTTT 59.450 47.619 0.00 0.00 41.91 2.83
29 30 1.185315 GGTGGCTAATGCACCATGTT 58.815 50.000 0.00 0.00 41.91 2.71
30 31 0.684153 GGGTGGCTAATGCACCATGT 60.684 55.000 10.68 0.00 40.02 3.21
31 32 0.683828 TGGGTGGCTAATGCACCATG 60.684 55.000 10.68 0.00 40.02 3.66
32 33 0.396139 CTGGGTGGCTAATGCACCAT 60.396 55.000 10.68 0.00 40.02 3.55
33 34 1.001020 CTGGGTGGCTAATGCACCA 60.001 57.895 10.68 0.00 40.02 4.17
34 35 1.754234 CCTGGGTGGCTAATGCACC 60.754 63.158 0.00 0.00 41.91 5.01
35 36 3.924507 CCTGGGTGGCTAATGCAC 58.075 61.111 0.00 0.00 41.91 4.57
52 53 3.723348 GTTCGTCCACGCAAGGGC 61.723 66.667 0.00 0.00 41.83 5.19
53 54 1.635663 GATGTTCGTCCACGCAAGGG 61.636 60.000 0.00 0.00 46.39 3.95
54 55 0.670546 AGATGTTCGTCCACGCAAGG 60.671 55.000 0.00 0.00 46.39 3.61
56 57 0.865111 CAAGATGTTCGTCCACGCAA 59.135 50.000 0.00 0.00 39.60 4.85
57 58 0.948623 CCAAGATGTTCGTCCACGCA 60.949 55.000 0.00 0.00 39.60 5.24
58 59 0.949105 ACCAAGATGTTCGTCCACGC 60.949 55.000 0.00 0.00 39.60 5.34
59 60 1.068474 GACCAAGATGTTCGTCCACG 58.932 55.000 0.00 0.00 41.45 4.94
60 61 1.439679 GGACCAAGATGTTCGTCCAC 58.560 55.000 13.50 0.00 43.58 4.02
61 62 0.323629 GGGACCAAGATGTTCGTCCA 59.676 55.000 18.80 0.00 45.51 4.02
62 63 0.323629 TGGGACCAAGATGTTCGTCC 59.676 55.000 10.46 10.46 43.42 4.79
63 64 2.009774 CATGGGACCAAGATGTTCGTC 58.990 52.381 0.00 0.00 0.00 4.20
64 65 1.351017 ACATGGGACCAAGATGTTCGT 59.649 47.619 0.00 0.00 0.00 3.85
65 66 1.739466 CACATGGGACCAAGATGTTCG 59.261 52.381 0.00 0.00 0.00 3.95
66 67 3.012518 CTCACATGGGACCAAGATGTTC 58.987 50.000 0.00 0.00 0.00 3.18
67 68 2.291153 CCTCACATGGGACCAAGATGTT 60.291 50.000 0.00 0.00 0.00 2.71
68 69 1.283029 CCTCACATGGGACCAAGATGT 59.717 52.381 0.00 0.00 0.00 3.06
69 70 1.283029 ACCTCACATGGGACCAAGATG 59.717 52.381 0.00 0.00 0.00 2.90
70 71 1.561542 GACCTCACATGGGACCAAGAT 59.438 52.381 0.00 0.00 0.00 2.40
71 72 0.984230 GACCTCACATGGGACCAAGA 59.016 55.000 0.00 0.00 0.00 3.02
72 73 0.692476 TGACCTCACATGGGACCAAG 59.308 55.000 0.00 0.00 0.00 3.61
73 74 1.144691 TTGACCTCACATGGGACCAA 58.855 50.000 0.00 0.00 0.00 3.67
74 75 1.144691 TTTGACCTCACATGGGACCA 58.855 50.000 0.00 0.00 0.00 4.02
75 76 2.290896 TGATTTGACCTCACATGGGACC 60.291 50.000 0.00 0.00 0.00 4.46
76 77 3.012518 CTGATTTGACCTCACATGGGAC 58.987 50.000 0.00 0.00 0.00 4.46
77 78 2.618816 GCTGATTTGACCTCACATGGGA 60.619 50.000 0.00 0.00 0.00 4.37
78 79 1.747355 GCTGATTTGACCTCACATGGG 59.253 52.381 0.00 0.00 0.00 4.00
79 80 2.422479 CAGCTGATTTGACCTCACATGG 59.578 50.000 8.42 0.00 0.00 3.66
80 81 2.422479 CCAGCTGATTTGACCTCACATG 59.578 50.000 17.39 0.00 0.00 3.21
81 82 2.306805 TCCAGCTGATTTGACCTCACAT 59.693 45.455 17.39 0.00 0.00 3.21
82 83 1.699083 TCCAGCTGATTTGACCTCACA 59.301 47.619 17.39 0.00 0.00 3.58
83 84 2.479566 TCCAGCTGATTTGACCTCAC 57.520 50.000 17.39 0.00 0.00 3.51
84 85 3.726557 ATTCCAGCTGATTTGACCTCA 57.273 42.857 17.39 0.00 0.00 3.86
85 86 3.557595 CGTATTCCAGCTGATTTGACCTC 59.442 47.826 17.39 0.00 0.00 3.85
86 87 3.535561 CGTATTCCAGCTGATTTGACCT 58.464 45.455 17.39 0.00 0.00 3.85
87 88 2.614057 CCGTATTCCAGCTGATTTGACC 59.386 50.000 17.39 0.00 0.00 4.02
88 89 2.032178 GCCGTATTCCAGCTGATTTGAC 59.968 50.000 17.39 5.52 0.00 3.18
89 90 2.092968 AGCCGTATTCCAGCTGATTTGA 60.093 45.455 17.39 0.00 34.99 2.69
90 91 2.292267 AGCCGTATTCCAGCTGATTTG 58.708 47.619 17.39 0.00 34.99 2.32
91 92 2.717639 AGCCGTATTCCAGCTGATTT 57.282 45.000 17.39 1.05 34.99 2.17
96 97 1.776662 TAGTCAGCCGTATTCCAGCT 58.223 50.000 0.00 0.00 37.32 4.24
97 98 2.821991 ATAGTCAGCCGTATTCCAGC 57.178 50.000 0.00 0.00 0.00 4.85
98 99 4.848562 TGTATAGTCAGCCGTATTCCAG 57.151 45.455 0.00 0.00 0.00 3.86
99 100 5.353938 GTTTGTATAGTCAGCCGTATTCCA 58.646 41.667 0.00 0.00 0.00 3.53
100 101 4.443394 CGTTTGTATAGTCAGCCGTATTCC 59.557 45.833 0.00 0.00 0.00 3.01
101 102 4.443394 CCGTTTGTATAGTCAGCCGTATTC 59.557 45.833 0.00 0.00 0.00 1.75
102 103 4.365723 CCGTTTGTATAGTCAGCCGTATT 58.634 43.478 0.00 0.00 0.00 1.89
103 104 3.243636 CCCGTTTGTATAGTCAGCCGTAT 60.244 47.826 0.00 0.00 0.00 3.06
104 105 2.099592 CCCGTTTGTATAGTCAGCCGTA 59.900 50.000 0.00 0.00 0.00 4.02
105 106 1.134907 CCCGTTTGTATAGTCAGCCGT 60.135 52.381 0.00 0.00 0.00 5.68
106 107 1.567504 CCCGTTTGTATAGTCAGCCG 58.432 55.000 0.00 0.00 0.00 5.52
107 108 1.296727 GCCCGTTTGTATAGTCAGCC 58.703 55.000 0.00 0.00 0.00 4.85
108 109 0.928229 CGCCCGTTTGTATAGTCAGC 59.072 55.000 0.00 0.00 0.00 4.26
109 110 2.572191 TCGCCCGTTTGTATAGTCAG 57.428 50.000 0.00 0.00 0.00 3.51
110 111 2.231964 AGTTCGCCCGTTTGTATAGTCA 59.768 45.455 0.00 0.00 0.00 3.41
111 112 2.856557 GAGTTCGCCCGTTTGTATAGTC 59.143 50.000 0.00 0.00 0.00 2.59
112 113 2.494870 AGAGTTCGCCCGTTTGTATAGT 59.505 45.455 0.00 0.00 0.00 2.12
113 114 3.114065 GAGAGTTCGCCCGTTTGTATAG 58.886 50.000 0.00 0.00 0.00 1.31
114 115 2.756760 AGAGAGTTCGCCCGTTTGTATA 59.243 45.455 0.00 0.00 0.00 1.47
115 116 1.549170 AGAGAGTTCGCCCGTTTGTAT 59.451 47.619 0.00 0.00 0.00 2.29
116 117 0.963962 AGAGAGTTCGCCCGTTTGTA 59.036 50.000 0.00 0.00 0.00 2.41
117 118 0.963962 TAGAGAGTTCGCCCGTTTGT 59.036 50.000 0.00 0.00 0.00 2.83
118 119 1.067776 ACTAGAGAGTTCGCCCGTTTG 60.068 52.381 0.00 0.00 28.61 2.93
119 120 1.254954 ACTAGAGAGTTCGCCCGTTT 58.745 50.000 0.00 0.00 28.61 3.60
120 121 2.119801 TACTAGAGAGTTCGCCCGTT 57.880 50.000 0.00 0.00 37.10 4.44
121 122 1.948145 CATACTAGAGAGTTCGCCCGT 59.052 52.381 0.00 0.00 37.10 5.28
122 123 2.219458 TCATACTAGAGAGTTCGCCCG 58.781 52.381 0.00 0.00 37.10 6.13
123 124 3.057174 CCATCATACTAGAGAGTTCGCCC 60.057 52.174 0.00 0.00 37.10 6.13
124 125 3.821600 TCCATCATACTAGAGAGTTCGCC 59.178 47.826 0.00 0.00 37.10 5.54
125 126 5.440234 TTCCATCATACTAGAGAGTTCGC 57.560 43.478 0.00 0.00 37.10 4.70
126 127 7.175119 TGGTATTCCATCATACTAGAGAGTTCG 59.825 40.741 0.00 0.00 39.03 3.95
127 128 8.410673 TGGTATTCCATCATACTAGAGAGTTC 57.589 38.462 0.00 0.00 39.03 3.01
144 145 3.313526 GTGTCAGTCATGCATGGTATTCC 59.686 47.826 25.97 10.76 0.00 3.01
145 146 3.940852 TGTGTCAGTCATGCATGGTATTC 59.059 43.478 25.97 14.20 0.00 1.75
146 147 3.943381 CTGTGTCAGTCATGCATGGTATT 59.057 43.478 25.97 7.05 0.00 1.89
147 148 3.198417 TCTGTGTCAGTCATGCATGGTAT 59.802 43.478 25.97 9.87 32.61 2.73
148 149 2.566724 TCTGTGTCAGTCATGCATGGTA 59.433 45.455 25.97 5.34 32.61 3.25
149 150 1.348696 TCTGTGTCAGTCATGCATGGT 59.651 47.619 25.97 11.51 32.61 3.55
150 151 2.103537 TCTGTGTCAGTCATGCATGG 57.896 50.000 25.97 10.79 32.61 3.66
151 152 3.007635 ACATCTGTGTCAGTCATGCATG 58.992 45.455 21.07 21.07 31.41 4.06
152 153 3.007635 CACATCTGTGTCAGTCATGCAT 58.992 45.455 0.00 0.00 40.96 3.96
153 154 2.419667 CACATCTGTGTCAGTCATGCA 58.580 47.619 2.09 0.00 40.96 3.96
154 155 1.736126 CCACATCTGTGTCAGTCATGC 59.264 52.381 9.33 0.00 44.21 4.06
155 156 2.353323 CCCACATCTGTGTCAGTCATG 58.647 52.381 9.33 0.00 44.21 3.07
156 157 1.339438 GCCCACATCTGTGTCAGTCAT 60.339 52.381 9.33 0.00 44.21 3.06
157 158 0.035317 GCCCACATCTGTGTCAGTCA 59.965 55.000 9.33 0.00 44.21 3.41
158 159 0.674895 GGCCCACATCTGTGTCAGTC 60.675 60.000 9.33 0.00 44.21 3.51
159 160 1.376466 GGCCCACATCTGTGTCAGT 59.624 57.895 9.33 0.00 44.21 3.41
160 161 0.034767 ATGGCCCACATCTGTGTCAG 60.035 55.000 0.00 0.00 44.21 3.51
161 162 0.322726 CATGGCCCACATCTGTGTCA 60.323 55.000 0.00 5.43 44.21 3.58
162 163 0.322816 ACATGGCCCACATCTGTGTC 60.323 55.000 0.00 1.32 44.21 3.67
163 164 0.112995 AACATGGCCCACATCTGTGT 59.887 50.000 0.00 0.00 44.21 3.72
164 165 0.528924 CAACATGGCCCACATCTGTG 59.471 55.000 0.00 3.28 45.23 3.66
165 166 0.405198 TCAACATGGCCCACATCTGT 59.595 50.000 0.00 0.00 37.84 3.41
166 167 1.771565 ATCAACATGGCCCACATCTG 58.228 50.000 0.00 0.00 37.84 2.90
167 168 2.498481 CAAATCAACATGGCCCACATCT 59.502 45.455 0.00 0.00 37.84 2.90
168 169 2.496871 TCAAATCAACATGGCCCACATC 59.503 45.455 0.00 0.00 37.84 3.06
169 170 2.234414 GTCAAATCAACATGGCCCACAT 59.766 45.455 0.00 0.00 41.57 3.21
170 171 1.617850 GTCAAATCAACATGGCCCACA 59.382 47.619 0.00 0.00 0.00 4.17
171 172 1.617850 TGTCAAATCAACATGGCCCAC 59.382 47.619 0.00 0.00 0.00 4.61
172 173 2.006805 TGTCAAATCAACATGGCCCA 57.993 45.000 0.00 0.00 0.00 5.36
173 174 2.687370 GTTGTCAAATCAACATGGCCC 58.313 47.619 0.00 0.00 44.65 5.80
180 181 2.622942 TCCAGCCTGTTGTCAAATCAAC 59.377 45.455 3.09 3.09 45.25 3.18
181 182 2.942804 TCCAGCCTGTTGTCAAATCAA 58.057 42.857 0.00 0.00 0.00 2.57
182 183 2.655090 TCCAGCCTGTTGTCAAATCA 57.345 45.000 0.00 0.00 0.00 2.57
183 184 2.821969 ACATCCAGCCTGTTGTCAAATC 59.178 45.455 0.00 0.00 0.00 2.17
184 185 2.559668 CACATCCAGCCTGTTGTCAAAT 59.440 45.455 0.00 0.00 0.00 2.32
185 186 1.955778 CACATCCAGCCTGTTGTCAAA 59.044 47.619 0.00 0.00 0.00 2.69
186 187 1.608055 CACATCCAGCCTGTTGTCAA 58.392 50.000 0.00 0.00 0.00 3.18
187 188 0.890542 GCACATCCAGCCTGTTGTCA 60.891 55.000 0.00 0.00 0.00 3.58
188 189 1.878775 GCACATCCAGCCTGTTGTC 59.121 57.895 0.00 0.00 0.00 3.18
189 190 1.968017 CGCACATCCAGCCTGTTGT 60.968 57.895 0.00 0.00 0.00 3.32
190 191 2.693762 CCGCACATCCAGCCTGTTG 61.694 63.158 0.00 0.00 0.00 3.33
191 192 2.360350 CCGCACATCCAGCCTGTT 60.360 61.111 0.00 0.00 0.00 3.16
192 193 3.640407 ACCGCACATCCAGCCTGT 61.640 61.111 0.00 0.00 0.00 4.00
193 194 3.129502 CACCGCACATCCAGCCTG 61.130 66.667 0.00 0.00 0.00 4.85
197 198 2.642996 TATCCGCACCGCACATCCAG 62.643 60.000 0.00 0.00 0.00 3.86
198 199 2.726351 TATCCGCACCGCACATCCA 61.726 57.895 0.00 0.00 0.00 3.41
199 200 2.108157 TATCCGCACCGCACATCC 59.892 61.111 0.00 0.00 0.00 3.51
200 201 1.490693 CTGTATCCGCACCGCACATC 61.491 60.000 0.00 0.00 0.00 3.06
201 202 1.521457 CTGTATCCGCACCGCACAT 60.521 57.895 0.00 0.00 0.00 3.21
202 203 2.125713 CTGTATCCGCACCGCACA 60.126 61.111 0.00 0.00 0.00 4.57
203 204 2.890474 CCTGTATCCGCACCGCAC 60.890 66.667 0.00 0.00 0.00 5.34
204 205 2.949909 AACCTGTATCCGCACCGCA 61.950 57.895 0.00 0.00 0.00 5.69
205 206 2.125269 AACCTGTATCCGCACCGC 60.125 61.111 0.00 0.00 0.00 5.68
206 207 2.461110 GCAACCTGTATCCGCACCG 61.461 63.158 0.00 0.00 0.00 4.94
207 208 2.461110 CGCAACCTGTATCCGCACC 61.461 63.158 0.00 0.00 0.00 5.01
208 209 3.089784 CGCAACCTGTATCCGCAC 58.910 61.111 0.00 0.00 0.00 5.34
209 210 2.817834 GCGCAACCTGTATCCGCA 60.818 61.111 0.30 0.00 43.67 5.69
210 211 3.925238 CGCGCAACCTGTATCCGC 61.925 66.667 8.75 0.00 41.10 5.54
211 212 3.925238 GCGCGCAACCTGTATCCG 61.925 66.667 29.10 0.00 0.00 4.18
212 213 3.925238 CGCGCGCAACCTGTATCC 61.925 66.667 32.61 0.00 0.00 2.59
213 214 4.575245 GCGCGCGCAACCTGTATC 62.575 66.667 46.11 15.61 41.49 2.24
223 224 2.649257 CCTAACTCTATGCGCGCGC 61.649 63.158 45.02 45.02 42.35 6.86
224 225 0.387367 ATCCTAACTCTATGCGCGCG 60.387 55.000 28.44 28.44 0.00 6.86
225 226 2.631418 TATCCTAACTCTATGCGCGC 57.369 50.000 27.26 27.26 0.00 6.86
226 227 4.563184 GGATTTATCCTAACTCTATGCGCG 59.437 45.833 0.00 0.00 43.73 6.86
259 260 1.057636 CTGCAACAAAGCAAGCGATG 58.942 50.000 0.00 0.00 45.13 3.84
260 261 0.665369 GCTGCAACAAAGCAAGCGAT 60.665 50.000 0.00 0.00 45.13 4.58
261 262 1.299316 GCTGCAACAAAGCAAGCGA 60.299 52.632 0.00 0.00 45.13 4.93
262 263 2.641783 CGCTGCAACAAAGCAAGCG 61.642 57.895 14.49 14.49 46.66 4.68
263 264 2.935446 GCGCTGCAACAAAGCAAGC 61.935 57.895 0.00 0.00 45.13 4.01
264 265 0.040157 TAGCGCTGCAACAAAGCAAG 60.040 50.000 22.90 0.00 45.13 4.01
265 266 0.317770 GTAGCGCTGCAACAAAGCAA 60.318 50.000 22.90 0.00 45.13 3.91
266 267 1.282570 GTAGCGCTGCAACAAAGCA 59.717 52.632 22.90 0.00 40.86 3.91
267 268 0.109597 ATGTAGCGCTGCAACAAAGC 60.110 50.000 31.56 5.23 37.31 3.51
268 269 3.680642 ATATGTAGCGCTGCAACAAAG 57.319 42.857 31.56 0.00 0.00 2.77
269 270 4.188462 ACTATATGTAGCGCTGCAACAAA 58.812 39.130 31.56 17.33 0.00 2.83
270 271 3.792401 ACTATATGTAGCGCTGCAACAA 58.208 40.909 31.56 19.76 0.00 2.83
271 272 3.452755 ACTATATGTAGCGCTGCAACA 57.547 42.857 31.56 22.39 0.00 3.33
272 273 4.143305 GCTAACTATATGTAGCGCTGCAAC 60.143 45.833 31.56 17.04 0.00 4.17
273 274 3.987868 GCTAACTATATGTAGCGCTGCAA 59.012 43.478 31.56 20.17 0.00 4.08
274 275 3.005367 TGCTAACTATATGTAGCGCTGCA 59.995 43.478 30.19 30.19 38.31 4.41
275 276 3.575630 TGCTAACTATATGTAGCGCTGC 58.424 45.455 22.90 21.06 38.31 5.25
276 277 4.799678 ACTGCTAACTATATGTAGCGCTG 58.200 43.478 22.90 3.15 38.31 5.18
277 278 5.392165 GCTACTGCTAACTATATGTAGCGCT 60.392 44.000 17.26 17.26 41.80 5.92
278 279 4.794246 GCTACTGCTAACTATATGTAGCGC 59.206 45.833 0.00 0.00 41.80 5.92
280 281 5.940595 ACGCTACTGCTAACTATATGTAGC 58.059 41.667 11.48 11.48 45.19 3.58
281 282 6.802348 CCAACGCTACTGCTAACTATATGTAG 59.198 42.308 0.00 0.00 36.97 2.74
282 283 6.263842 ACCAACGCTACTGCTAACTATATGTA 59.736 38.462 0.00 0.00 36.97 2.29
283 284 5.068723 ACCAACGCTACTGCTAACTATATGT 59.931 40.000 0.00 0.00 36.97 2.29
284 285 5.529791 ACCAACGCTACTGCTAACTATATG 58.470 41.667 0.00 0.00 36.97 1.78
285 286 5.278858 GGACCAACGCTACTGCTAACTATAT 60.279 44.000 0.00 0.00 36.97 0.86
286 287 4.037208 GGACCAACGCTACTGCTAACTATA 59.963 45.833 0.00 0.00 36.97 1.31
287 288 3.181478 GGACCAACGCTACTGCTAACTAT 60.181 47.826 0.00 0.00 36.97 2.12
288 289 2.165030 GGACCAACGCTACTGCTAACTA 59.835 50.000 0.00 0.00 36.97 2.24
289 290 1.067071 GGACCAACGCTACTGCTAACT 60.067 52.381 0.00 0.00 36.97 2.24
290 291 1.356938 GGACCAACGCTACTGCTAAC 58.643 55.000 0.00 0.00 36.97 2.34
291 292 0.108992 CGGACCAACGCTACTGCTAA 60.109 55.000 0.00 0.00 36.97 3.09
292 293 1.509463 CGGACCAACGCTACTGCTA 59.491 57.895 0.00 0.00 36.97 3.49
293 294 2.261671 CGGACCAACGCTACTGCT 59.738 61.111 0.00 0.00 36.97 4.24
294 295 2.813908 CCGGACCAACGCTACTGC 60.814 66.667 0.00 0.00 0.00 4.40
295 296 2.125673 CCCGGACCAACGCTACTG 60.126 66.667 0.73 0.00 0.00 2.74
296 297 4.078516 GCCCGGACCAACGCTACT 62.079 66.667 0.73 0.00 0.00 2.57
297 298 4.382320 TGCCCGGACCAACGCTAC 62.382 66.667 0.73 0.00 0.00 3.58
298 299 4.077184 CTGCCCGGACCAACGCTA 62.077 66.667 0.73 0.00 0.00 4.26
317 318 4.092091 CAGCTAAGTTGTTGTAGCAGTAGC 59.908 45.833 5.56 0.00 44.29 3.58
318 319 5.230942 ACAGCTAAGTTGTTGTAGCAGTAG 58.769 41.667 5.56 0.00 44.29 2.57
319 320 5.209818 ACAGCTAAGTTGTTGTAGCAGTA 57.790 39.130 5.56 0.00 44.29 2.74
320 321 4.073293 ACAGCTAAGTTGTTGTAGCAGT 57.927 40.909 5.56 0.73 44.29 4.40
321 322 5.769967 CTACAGCTAAGTTGTTGTAGCAG 57.230 43.478 12.62 0.13 44.29 4.24
324 325 3.060895 GCGCTACAGCTAAGTTGTTGTAG 59.939 47.826 17.12 17.12 46.98 2.74
325 326 2.991190 GCGCTACAGCTAAGTTGTTGTA 59.009 45.455 0.00 0.00 39.32 2.41
326 327 1.798813 GCGCTACAGCTAAGTTGTTGT 59.201 47.619 0.00 0.00 39.32 3.32
327 328 1.201812 CGCGCTACAGCTAAGTTGTTG 60.202 52.381 5.56 0.00 39.32 3.33
328 329 1.068474 CGCGCTACAGCTAAGTTGTT 58.932 50.000 5.56 0.00 39.32 2.83
329 330 0.038526 ACGCGCTACAGCTAAGTTGT 60.039 50.000 5.73 0.00 39.32 3.32
330 331 1.068474 AACGCGCTACAGCTAAGTTG 58.932 50.000 5.73 0.00 39.32 3.16
331 332 2.094854 ACTAACGCGCTACAGCTAAGTT 60.095 45.455 5.73 0.90 39.32 2.66
332 333 1.471684 ACTAACGCGCTACAGCTAAGT 59.528 47.619 5.73 0.00 39.32 2.24
333 334 2.190325 ACTAACGCGCTACAGCTAAG 57.810 50.000 5.73 0.00 39.32 2.18
334 335 2.032550 CCTACTAACGCGCTACAGCTAA 59.967 50.000 5.73 0.00 39.32 3.09
335 336 1.600957 CCTACTAACGCGCTACAGCTA 59.399 52.381 5.73 0.00 39.32 3.32
336 337 0.381089 CCTACTAACGCGCTACAGCT 59.619 55.000 5.73 0.00 39.32 4.24
337 338 1.207377 GCCTACTAACGCGCTACAGC 61.207 60.000 5.73 0.00 37.78 4.40
338 339 0.381089 AGCCTACTAACGCGCTACAG 59.619 55.000 5.73 0.00 0.00 2.74
339 340 0.813184 AAGCCTACTAACGCGCTACA 59.187 50.000 5.73 0.00 0.00 2.74
340 341 1.851053 GAAAGCCTACTAACGCGCTAC 59.149 52.381 5.73 0.00 0.00 3.58
341 342 1.747355 AGAAAGCCTACTAACGCGCTA 59.253 47.619 5.73 0.00 0.00 4.26
342 343 0.531200 AGAAAGCCTACTAACGCGCT 59.469 50.000 5.73 0.00 0.00 5.92
343 344 0.922032 GAGAAAGCCTACTAACGCGC 59.078 55.000 5.73 0.00 0.00 6.86
344 345 1.134560 AGGAGAAAGCCTACTAACGCG 59.865 52.381 3.53 3.53 33.16 6.01
345 346 2.963548 AGGAGAAAGCCTACTAACGC 57.036 50.000 0.00 0.00 33.16 4.84
346 347 5.821995 ACTACTAGGAGAAAGCCTACTAACG 59.178 44.000 9.61 0.00 37.84 3.18
347 348 7.042119 CGTACTACTAGGAGAAAGCCTACTAAC 60.042 44.444 9.61 0.00 37.84 2.34
348 349 6.989169 CGTACTACTAGGAGAAAGCCTACTAA 59.011 42.308 9.61 0.00 37.84 2.24
349 350 6.325028 TCGTACTACTAGGAGAAAGCCTACTA 59.675 42.308 9.61 0.00 37.27 1.82
350 351 5.130145 TCGTACTACTAGGAGAAAGCCTACT 59.870 44.000 9.61 0.00 39.95 2.57
351 352 5.363939 TCGTACTACTAGGAGAAAGCCTAC 58.636 45.833 9.61 0.00 39.50 3.18
352 353 5.620738 TCGTACTACTAGGAGAAAGCCTA 57.379 43.478 9.61 0.00 39.50 3.93
353 354 4.500499 TCGTACTACTAGGAGAAAGCCT 57.500 45.455 9.61 0.00 42.15 4.58
354 355 5.771153 AATCGTACTACTAGGAGAAAGCC 57.229 43.478 9.61 0.00 0.00 4.35
355 356 6.019720 GCAAAATCGTACTACTAGGAGAAAGC 60.020 42.308 9.61 0.00 0.00 3.51
356 357 6.196724 CGCAAAATCGTACTACTAGGAGAAAG 59.803 42.308 9.61 0.00 0.00 2.62
357 358 6.032094 CGCAAAATCGTACTACTAGGAGAAA 58.968 40.000 9.61 0.00 0.00 2.52
358 359 5.449588 CCGCAAAATCGTACTACTAGGAGAA 60.450 44.000 9.61 0.00 0.00 2.87
359 360 4.036027 CCGCAAAATCGTACTACTAGGAGA 59.964 45.833 9.61 0.00 0.00 3.71
360 361 4.201990 ACCGCAAAATCGTACTACTAGGAG 60.202 45.833 0.00 0.00 0.00 3.69
361 362 3.696051 ACCGCAAAATCGTACTACTAGGA 59.304 43.478 0.00 0.00 0.00 2.94
362 363 3.795101 CACCGCAAAATCGTACTACTAGG 59.205 47.826 0.00 0.00 0.00 3.02
363 364 4.418392 ACACCGCAAAATCGTACTACTAG 58.582 43.478 0.00 0.00 0.00 2.57
364 365 4.414852 GACACCGCAAAATCGTACTACTA 58.585 43.478 0.00 0.00 0.00 1.82
365 366 3.248266 GACACCGCAAAATCGTACTACT 58.752 45.455 0.00 0.00 0.00 2.57
366 367 2.027214 CGACACCGCAAAATCGTACTAC 59.973 50.000 0.00 0.00 0.00 2.73
367 368 2.252747 CGACACCGCAAAATCGTACTA 58.747 47.619 0.00 0.00 0.00 1.82
368 369 1.065358 CGACACCGCAAAATCGTACT 58.935 50.000 0.00 0.00 0.00 2.73
369 370 3.555817 CGACACCGCAAAATCGTAC 57.444 52.632 0.00 0.00 0.00 3.67
480 481 0.988063 GCCCACTCTCTTCTTCCCTT 59.012 55.000 0.00 0.00 0.00 3.95
511 512 3.549794 CAACTCTCTCCATCCAATTCCC 58.450 50.000 0.00 0.00 0.00 3.97
512 513 3.549794 CCAACTCTCTCCATCCAATTCC 58.450 50.000 0.00 0.00 0.00 3.01
528 529 6.688073 TCACTCTCTTTTTCTATCCCAACT 57.312 37.500 0.00 0.00 0.00 3.16
538 539 5.866092 GGCAAAATCCATCACTCTCTTTTTC 59.134 40.000 0.00 0.00 0.00 2.29
542 543 4.038271 TGGCAAAATCCATCACTCTCTT 57.962 40.909 0.00 0.00 0.00 2.85
543 544 3.726557 TGGCAAAATCCATCACTCTCT 57.273 42.857 0.00 0.00 0.00 3.10
545 546 3.972133 TCATGGCAAAATCCATCACTCT 58.028 40.909 0.00 0.00 44.63 3.24
549 550 5.224821 TGTTTTCATGGCAAAATCCATCA 57.775 34.783 0.00 0.00 44.63 3.07
563 564 5.911752 TGTAACTGGTTGCAATGTTTTCAT 58.088 33.333 16.50 0.79 43.05 2.57
564 565 5.330455 TGTAACTGGTTGCAATGTTTTCA 57.670 34.783 16.50 13.79 32.39 2.69
572 573 2.803451 CGCTTTTGTAACTGGTTGCAA 58.197 42.857 11.70 11.70 42.00 4.08
576 577 1.336755 CCTGCGCTTTTGTAACTGGTT 59.663 47.619 9.73 0.00 0.00 3.67
581 582 2.124122 CCAAACCTGCGCTTTTGTAAC 58.876 47.619 20.67 0.00 31.86 2.50
595 596 1.881925 GCCCAAAATGAAGGCCAAACC 60.882 52.381 5.01 0.00 41.00 3.27
602 603 1.678101 GATCCGAGCCCAAAATGAAGG 59.322 52.381 0.00 0.00 0.00 3.46
603 604 1.678101 GGATCCGAGCCCAAAATGAAG 59.322 52.381 0.00 0.00 0.00 3.02
606 607 2.222027 GTAGGATCCGAGCCCAAAATG 58.778 52.381 5.98 0.00 0.00 2.32
634 636 4.920927 CACAAATTTCCACAAACCGGATAC 59.079 41.667 9.46 0.00 30.99 2.24
646 678 4.828939 AGCAGTTCAGATCACAAATTTCCA 59.171 37.500 0.00 0.00 0.00 3.53
647 679 5.382618 AGCAGTTCAGATCACAAATTTCC 57.617 39.130 0.00 0.00 0.00 3.13
649 681 5.106555 CCGTAGCAGTTCAGATCACAAATTT 60.107 40.000 0.00 0.00 0.00 1.82
658 690 2.093973 CAGTTCCCGTAGCAGTTCAGAT 60.094 50.000 0.00 0.00 0.00 2.90
659 691 1.272490 CAGTTCCCGTAGCAGTTCAGA 59.728 52.381 0.00 0.00 0.00 3.27
670 702 0.822164 CTAATCCCGTCAGTTCCCGT 59.178 55.000 0.00 0.00 0.00 5.28
673 705 3.800604 GCTGATCTAATCCCGTCAGTTCC 60.801 52.174 0.00 0.00 40.08 3.62
678 710 0.032130 GCGCTGATCTAATCCCGTCA 59.968 55.000 0.00 0.00 0.00 4.35
681 713 0.668706 CCAGCGCTGATCTAATCCCG 60.669 60.000 38.06 13.63 0.00 5.14
683 715 2.344950 CATCCAGCGCTGATCTAATCC 58.655 52.381 38.06 0.00 0.00 3.01
709 741 4.589675 GCCGGTGTTTGGACCCCA 62.590 66.667 1.90 0.00 31.57 4.96
751 783 4.657075 TTCTTTACCGAGATTTTGCGAC 57.343 40.909 0.00 0.00 0.00 5.19
761 793 2.735134 CCTTGACCGTTTCTTTACCGAG 59.265 50.000 0.00 0.00 0.00 4.63
764 796 6.376177 CATTTACCTTGACCGTTTCTTTACC 58.624 40.000 0.00 0.00 0.00 2.85
980 1020 3.957435 ATCGTCCCGTCCTGGAGCA 62.957 63.158 0.00 0.00 42.00 4.26
1157 1218 3.394836 GGAAGGACGCCAGCCTCT 61.395 66.667 0.00 0.00 33.76 3.69
1277 1398 1.630244 CTGCTGGTGCTTGTAGACGC 61.630 60.000 0.00 0.00 40.48 5.19
1359 1501 3.799755 CGCCTCTTTTTCGCCGGG 61.800 66.667 2.18 0.00 0.00 5.73
1559 1710 3.055719 GGATGGTGGCGTGGTGTG 61.056 66.667 0.00 0.00 0.00 3.82
1570 1721 4.162690 GAAGGCGGCGAGGATGGT 62.163 66.667 12.98 0.00 0.00 3.55
1702 1870 0.676184 AGAAACACGAGCAGAGCAGA 59.324 50.000 0.00 0.00 0.00 4.26
1703 1871 0.788995 CAGAAACACGAGCAGAGCAG 59.211 55.000 0.00 0.00 0.00 4.24
1704 1872 0.104855 ACAGAAACACGAGCAGAGCA 59.895 50.000 0.00 0.00 0.00 4.26
1705 1873 1.193426 GAACAGAAACACGAGCAGAGC 59.807 52.381 0.00 0.00 0.00 4.09
1706 1874 2.474359 CAGAACAGAAACACGAGCAGAG 59.526 50.000 0.00 0.00 0.00 3.35
1866 2052 4.567959 CGTCCCGGAATATAAGACGTTTTT 59.432 41.667 16.05 0.00 43.89 1.94
1867 2053 4.114794 CGTCCCGGAATATAAGACGTTTT 58.885 43.478 16.05 0.00 43.89 2.43
1868 2054 3.709987 CGTCCCGGAATATAAGACGTTT 58.290 45.455 16.05 0.00 43.89 3.60
1869 2055 3.360249 CGTCCCGGAATATAAGACGTT 57.640 47.619 16.05 0.00 43.89 3.99
1883 2069 4.336433 TGATTAACTACTAACTCCGTCCCG 59.664 45.833 0.00 0.00 0.00 5.14
1884 2070 5.735638 GCTGATTAACTACTAACTCCGTCCC 60.736 48.000 0.00 0.00 0.00 4.46
1885 2071 5.067544 AGCTGATTAACTACTAACTCCGTCC 59.932 44.000 0.00 0.00 0.00 4.79
1886 2072 6.134040 AGCTGATTAACTACTAACTCCGTC 57.866 41.667 0.00 0.00 0.00 4.79
1887 2073 5.651139 TGAGCTGATTAACTACTAACTCCGT 59.349 40.000 0.00 0.00 0.00 4.69
1888 2074 6.132791 TGAGCTGATTAACTACTAACTCCG 57.867 41.667 0.00 0.00 0.00 4.63
1889 2075 8.950208 ATTTGAGCTGATTAACTACTAACTCC 57.050 34.615 0.00 0.00 0.00 3.85
1949 2139 9.669353 CCAAATGCATGTAGAATGTAGAATAAC 57.331 33.333 0.00 0.00 0.00 1.89
2009 2199 0.036388 TGAAAAGCGGCCCTCTAGTG 60.036 55.000 0.00 0.00 0.00 2.74
2012 2202 1.742411 CGAATGAAAAGCGGCCCTCTA 60.742 52.381 0.00 0.00 0.00 2.43
2066 2256 3.673338 CACTTCTGCGACAAGTAAATCGA 59.327 43.478 0.00 0.00 40.86 3.59
2076 2266 5.105513 TCCACTTATATTCACTTCTGCGACA 60.106 40.000 0.00 0.00 0.00 4.35
2123 2313 7.276658 ACTTGTTGCGAAAATTGTTGTATCAAA 59.723 29.630 0.00 0.00 0.00 2.69
2124 2314 6.754209 ACTTGTTGCGAAAATTGTTGTATCAA 59.246 30.769 0.00 0.00 0.00 2.57
2125 2315 6.269315 ACTTGTTGCGAAAATTGTTGTATCA 58.731 32.000 0.00 0.00 0.00 2.15
2127 2317 8.810652 ATTACTTGTTGCGAAAATTGTTGTAT 57.189 26.923 0.00 0.00 0.00 2.29
2134 2324 7.096640 CGTCTGAAATTACTTGTTGCGAAAATT 60.097 33.333 0.00 0.00 0.00 1.82
2140 2330 4.383774 TCGTCTGAAATTACTTGTTGCG 57.616 40.909 0.00 0.00 0.00 4.85
2141 2331 5.147162 CCTTCGTCTGAAATTACTTGTTGC 58.853 41.667 0.00 0.00 32.66 4.17
2143 2333 5.617252 TCCCTTCGTCTGAAATTACTTGTT 58.383 37.500 0.00 0.00 32.66 2.83
2145 2335 5.238583 ACTCCCTTCGTCTGAAATTACTTG 58.761 41.667 0.00 0.00 32.66 3.16
2156 2346 9.765795 CAAAATAATCTAATACTCCCTTCGTCT 57.234 33.333 0.00 0.00 0.00 4.18
2161 2351 7.937394 CCGACCAAAATAATCTAATACTCCCTT 59.063 37.037 0.00 0.00 0.00 3.95
2293 2488 4.862902 TTTCACTCTCCTCTCAGAACAG 57.137 45.455 0.00 0.00 0.00 3.16
2346 2541 0.878523 CAGACGCCGAGACCAAAACA 60.879 55.000 0.00 0.00 0.00 2.83
2354 2549 2.761195 CCATCGACAGACGCCGAGA 61.761 63.158 0.00 0.00 42.26 4.04
2360 2555 1.335964 ACACAACTCCATCGACAGACG 60.336 52.381 0.00 0.00 44.09 4.18
2372 2567 4.393371 GCTCTTAAGGGAATCACACAACTC 59.607 45.833 6.51 0.00 0.00 3.01
2383 2578 3.022406 GGAGTACGAGCTCTTAAGGGAA 58.978 50.000 12.85 0.00 35.89 3.97
2384 2579 2.025605 TGGAGTACGAGCTCTTAAGGGA 60.026 50.000 12.85 0.00 35.89 4.20
2398 2593 1.732259 CATGGTTTCAGCGTGGAGTAC 59.268 52.381 0.00 0.00 0.00 2.73
2405 2600 1.067635 GCAATTCCATGGTTTCAGCGT 60.068 47.619 12.58 0.00 0.00 5.07
2432 2627 9.767684 ATTTTCTTGTTTTCGAAATTTGAAACC 57.232 25.926 12.12 2.40 35.22 3.27
2441 2636 8.643752 GTGAGTGAAATTTTCTTGTTTTCGAAA 58.356 29.630 6.47 6.47 33.15 3.46
2443 2638 7.272515 GTGTGAGTGAAATTTTCTTGTTTTCGA 59.727 33.333 10.33 0.00 33.15 3.71
2444 2639 7.273381 AGTGTGAGTGAAATTTTCTTGTTTTCG 59.727 33.333 10.33 0.00 33.15 3.46
2445 2640 8.466086 AGTGTGAGTGAAATTTTCTTGTTTTC 57.534 30.769 10.33 0.00 0.00 2.29
2446 2641 9.921637 TTAGTGTGAGTGAAATTTTCTTGTTTT 57.078 25.926 10.33 0.00 0.00 2.43
2488 2683 9.965824 AATGTCGATTTGTCTGAACTAAATTTT 57.034 25.926 0.00 0.00 0.00 1.82
2491 2686 9.965824 AAAAATGTCGATTTGTCTGAACTAAAT 57.034 25.926 0.00 0.00 31.83 1.40
2526 2721 5.597594 AGTACCCCGTTGTTTTAATTCCAAA 59.402 36.000 0.00 0.00 0.00 3.28
2529 2724 5.005740 AGAGTACCCCGTTGTTTTAATTCC 58.994 41.667 0.00 0.00 0.00 3.01
2546 2741 6.692249 GCGGAGTACAAAAATAGAGAGAGTAC 59.308 42.308 0.00 0.00 0.00 2.73
2562 2757 7.050970 AGACAAATCTTATATGCGGAGTACA 57.949 36.000 0.00 0.00 0.00 2.90
2563 2758 7.948278 AAGACAAATCTTATATGCGGAGTAC 57.052 36.000 0.00 0.00 43.70 2.73
2642 2840 4.671377 CATCCAACGGTATTGATTTGGTG 58.329 43.478 0.00 0.00 39.69 4.17
2657 2855 8.408601 ACAAATTAGTTCTATGATGCATCCAAC 58.591 33.333 23.67 18.56 0.00 3.77
2686 2884 9.216117 ACATCTCAAATACTAAAGGTGTACAAC 57.784 33.333 1.50 1.50 31.49 3.32
2824 3022 6.582295 GTGCTATTGATATTTTTATGCCGTGG 59.418 38.462 0.00 0.00 0.00 4.94
3039 3239 7.108194 TGAGCATTATATAGGAGCAATCAAGG 58.892 38.462 6.09 0.00 0.00 3.61
3050 3250 6.191657 TGGCCCATATGAGCATTATATAGG 57.808 41.667 11.64 0.00 0.00 2.57
3069 3269 1.959282 CAAGAGCTTAATGGGATGGCC 59.041 52.381 0.00 0.00 0.00 5.36
3137 3337 9.905713 ATCTTAGTTATTAATGGAGCAAGTGAA 57.094 29.630 0.00 0.00 0.00 3.18
3492 3697 4.469586 AGTTGGTCAAGTGATTTGGGTTTT 59.530 37.500 0.00 0.00 37.39 2.43
3508 3713 5.162075 GTCTATGAGTGTGTGTAGTTGGTC 58.838 45.833 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.