Multiple sequence alignment - TraesCS1A01G385900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G385900 chr1A 100.000 2759 0 0 1 2759 555511819 555514577 0.000000e+00 5096.0
1 TraesCS1A01G385900 chr1A 95.420 917 37 4 1347 2260 590250925 590251839 0.000000e+00 1456.0
2 TraesCS1A01G385900 chr1A 100.000 109 0 0 447 555 555512159 555512267 4.660000e-48 202.0
3 TraesCS1A01G385900 chr1A 100.000 109 0 0 341 449 555512265 555512373 4.660000e-48 202.0
4 TraesCS1A01G385900 chr7B 98.806 1508 16 2 757 2263 36966589 36968095 0.000000e+00 2684.0
5 TraesCS1A01G385900 chr7B 87.923 207 12 5 2359 2559 373773976 373773777 5.940000e-57 231.0
6 TraesCS1A01G385900 chr5A 90.020 1523 126 19 752 2262 407874593 407873085 0.000000e+00 1947.0
7 TraesCS1A01G385900 chr5A 84.889 225 20 4 176 398 558316606 558316818 5.980000e-52 215.0
8 TraesCS1A01G385900 chr5A 83.333 186 12 9 512 681 558316902 558317084 1.320000e-33 154.0
9 TraesCS1A01G385900 chr5A 93.333 60 2 1 447 504 558316759 558316818 1.360000e-13 87.9
10 TraesCS1A01G385900 chr5A 100.000 42 0 0 406 447 558316902 558316943 8.190000e-11 78.7
11 TraesCS1A01G385900 chr2B 89.262 1490 127 15 783 2260 348078075 348076607 0.000000e+00 1834.0
12 TraesCS1A01G385900 chr2B 84.375 128 9 11 2136 2262 38212173 38212290 6.240000e-22 115.0
13 TraesCS1A01G385900 chr5D 93.975 1112 54 8 1156 2261 230026142 230025038 0.000000e+00 1670.0
14 TraesCS1A01G385900 chr5D 96.918 292 9 0 764 1055 230026896 230026605 8.880000e-135 490.0
15 TraesCS1A01G385900 chr5D 100.000 44 0 0 989 1032 230026611 230026568 6.330000e-12 82.4
16 TraesCS1A01G385900 chr3A 95.248 947 39 4 1321 2262 697628654 697629599 0.000000e+00 1495.0
17 TraesCS1A01G385900 chr3A 86.441 118 11 5 2151 2267 121407930 121408043 1.040000e-24 124.0
18 TraesCS1A01G385900 chr3A 76.923 234 44 8 1740 1968 550487949 550488177 1.040000e-24 124.0
19 TraesCS1A01G385900 chr7A 95.783 498 20 1 2263 2759 412888359 412887862 0.000000e+00 802.0
20 TraesCS1A01G385900 chr7A 95.982 448 17 1 4 451 412888988 412888542 0.000000e+00 726.0
21 TraesCS1A01G385900 chr7A 94.822 309 14 2 447 755 412888651 412888345 5.340000e-132 481.0
22 TraesCS1A01G385900 chr7D 88.131 396 33 10 2363 2750 632846295 632846684 2.500000e-125 459.0
23 TraesCS1A01G385900 chr2A 87.115 357 26 10 2409 2759 173810838 173810496 1.200000e-103 387.0
24 TraesCS1A01G385900 chr2A 86.853 251 22 8 2508 2750 682011722 682011475 1.260000e-68 270.0
25 TraesCS1A01G385900 chr2A 74.046 524 87 35 1748 2261 54463196 54462712 4.730000e-38 169.0
26 TraesCS1A01G385900 chr2A 92.920 113 5 3 2363 2474 682011831 682011721 7.910000e-36 161.0
27 TraesCS1A01G385900 chr2D 83.292 401 38 7 7 399 197921002 197920623 2.630000e-90 342.0
28 TraesCS1A01G385900 chr2D 80.303 330 40 8 7 333 627905080 627904773 2.760000e-55 226.0
29 TraesCS1A01G385900 chr2D 86.154 130 15 2 504 631 627902425 627902297 1.330000e-28 137.0
30 TraesCS1A01G385900 chr2D 79.897 194 26 6 504 684 197920578 197920385 2.230000e-26 130.0
31 TraesCS1A01G385900 chr2D 85.833 120 7 9 2145 2262 591466062 591466173 4.830000e-23 119.0
32 TraesCS1A01G385900 chr2D 96.875 64 2 0 336 399 627902534 627902471 1.040000e-19 108.0
33 TraesCS1A01G385900 chr2D 96.610 59 2 0 447 505 197920681 197920623 6.290000e-17 99.0
34 TraesCS1A01G385900 chr2D 96.610 59 2 0 447 505 627902529 627902471 6.290000e-17 99.0
35 TraesCS1A01G385900 chr2D 92.453 53 4 0 398 450 627902425 627902373 2.950000e-10 76.8
36 TraesCS1A01G385900 chr2D 90.566 53 5 0 398 450 197920578 197920526 1.370000e-08 71.3
37 TraesCS1A01G385900 chr1B 83.123 397 45 10 7 399 516957075 516956697 2.630000e-90 342.0
38 TraesCS1A01G385900 chr6A 80.556 216 32 8 768 979 73540872 73541081 1.020000e-34 158.0
39 TraesCS1A01G385900 chr6A 73.512 521 93 33 1748 2261 73541863 73542345 3.680000e-34 156.0
40 TraesCS1A01G385900 chr4B 93.878 98 6 0 2357 2454 451626775 451626678 6.160000e-32 148.0
41 TraesCS1A01G385900 chr4A 94.444 90 5 0 2354 2443 743380113 743380202 3.710000e-29 139.0
42 TraesCS1A01G385900 chr4A 75.080 313 58 18 768 1071 742298666 742298967 8.020000e-26 128.0
43 TraesCS1A01G385900 chr4A 92.222 90 7 0 2354 2443 743541115 743541204 8.020000e-26 128.0
44 TraesCS1A01G385900 chr6D 76.106 226 30 17 764 979 25833947 25833736 2.260000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G385900 chr1A 555511819 555514577 2758 False 1833.333333 5096 100.000000 1 2759 3 chr1A.!!$F2 2758
1 TraesCS1A01G385900 chr1A 590250925 590251839 914 False 1456.000000 1456 95.420000 1347 2260 1 chr1A.!!$F1 913
2 TraesCS1A01G385900 chr7B 36966589 36968095 1506 False 2684.000000 2684 98.806000 757 2263 1 chr7B.!!$F1 1506
3 TraesCS1A01G385900 chr5A 407873085 407874593 1508 True 1947.000000 1947 90.020000 752 2262 1 chr5A.!!$R1 1510
4 TraesCS1A01G385900 chr2B 348076607 348078075 1468 True 1834.000000 1834 89.262000 783 2260 1 chr2B.!!$R1 1477
5 TraesCS1A01G385900 chr5D 230025038 230026896 1858 True 747.466667 1670 96.964333 764 2261 3 chr5D.!!$R1 1497
6 TraesCS1A01G385900 chr3A 697628654 697629599 945 False 1495.000000 1495 95.248000 1321 2262 1 chr3A.!!$F3 941
7 TraesCS1A01G385900 chr7A 412887862 412888988 1126 True 669.666667 802 95.529000 4 2759 3 chr7A.!!$R1 2755

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
492 493 0.179018 AAGCTAGCCCGCCATTAAGG 60.179 55.0 12.13 0.0 41.84 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 3088 0.033208 TTTGGGGTGAGGCATGGATC 60.033 55.0 0.0 0.0 0.0 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 6.488715 AGAAGCCTAGAACCAATCTTCAATT 58.511 36.000 0.00 0.00 39.71 2.32
77 78 6.601217 AGAAGCCTAGAACCAATCTTCAATTC 59.399 38.462 0.00 0.00 39.71 2.17
123 124 5.817816 GCTAGCCTAGTATTTCAGAAAGCAA 59.182 40.000 2.29 0.00 0.00 3.91
133 134 1.610038 TCAGAAAGCAACATGCCACAG 59.390 47.619 0.00 0.00 46.52 3.66
136 137 0.316204 AAAGCAACATGCCACAGAGC 59.684 50.000 0.00 0.00 46.52 4.09
149 150 6.772360 TGCCACAGAGCAATTAAAATATCA 57.228 33.333 0.00 0.00 40.56 2.15
181 182 7.148641 CACATTCACACTACAGAGTTAGAACT 58.851 38.462 0.00 0.00 43.16 3.01
246 247 6.830873 ATTGGGCAGATAATCAAAGCTATC 57.169 37.500 0.00 0.00 0.00 2.08
247 248 5.308976 TGGGCAGATAATCAAAGCTATCA 57.691 39.130 0.00 0.00 0.00 2.15
259 260 8.593945 AATCAAAGCTATCAATTCCCTTACAA 57.406 30.769 0.00 0.00 0.00 2.41
306 307 6.696441 TTAAAACAAACTACACCCGACATT 57.304 33.333 0.00 0.00 0.00 2.71
370 371 1.747924 GCCATTCTTGGGAAGAGAAGC 59.252 52.381 0.00 0.00 43.84 3.86
376 377 0.912486 TTGGGAAGAGAAGCTAGCCC 59.088 55.000 12.13 3.61 40.20 5.19
381 382 1.341156 AAGAGAAGCTAGCCCGCCAT 61.341 55.000 12.13 0.00 0.00 4.40
451 452 9.759473 AGCAAGGTATTATGAGGCAAAATATAT 57.241 29.630 0.00 0.00 0.00 0.86
459 460 9.925545 ATTATGAGGCAAAATATATATGAGCCA 57.074 29.630 24.09 12.49 42.90 4.75
460 461 9.925545 TTATGAGGCAAAATATATATGAGCCAT 57.074 29.630 24.09 16.50 42.90 4.40
461 462 8.834004 ATGAGGCAAAATATATATGAGCCATT 57.166 30.769 24.09 12.26 42.90 3.16
462 463 8.284945 TGAGGCAAAATATATATGAGCCATTC 57.715 34.615 24.09 17.66 42.90 2.67
463 464 8.111545 TGAGGCAAAATATATATGAGCCATTCT 58.888 33.333 24.09 11.52 42.90 2.40
464 465 8.890410 AGGCAAAATATATATGAGCCATTCTT 57.110 30.769 24.09 9.52 42.90 2.52
465 466 8.746530 AGGCAAAATATATATGAGCCATTCTTG 58.253 33.333 24.09 8.82 42.90 3.02
466 467 7.977853 GGCAAAATATATATGAGCCATTCTTGG 59.022 37.037 20.24 0.00 46.66 3.61
467 468 7.977853 GCAAAATATATATGAGCCATTCTTGGG 59.022 37.037 0.00 0.00 43.84 4.12
468 469 9.246670 CAAAATATATATGAGCCATTCTTGGGA 57.753 33.333 0.00 0.00 43.84 4.37
469 470 9.827198 AAAATATATATGAGCCATTCTTGGGAA 57.173 29.630 0.00 0.00 43.84 3.97
470 471 9.471702 AAATATATATGAGCCATTCTTGGGAAG 57.528 33.333 0.00 0.00 43.84 3.46
471 472 6.708885 ATATATGAGCCATTCTTGGGAAGA 57.291 37.500 0.00 0.00 43.84 2.87
472 473 2.795231 TGAGCCATTCTTGGGAAGAG 57.205 50.000 0.00 0.00 43.84 2.85
473 474 2.269023 TGAGCCATTCTTGGGAAGAGA 58.731 47.619 0.00 0.00 43.84 3.10
474 475 2.644299 TGAGCCATTCTTGGGAAGAGAA 59.356 45.455 0.00 0.00 43.84 2.87
475 476 3.277715 GAGCCATTCTTGGGAAGAGAAG 58.722 50.000 0.00 0.00 43.84 2.85
476 477 1.747924 GCCATTCTTGGGAAGAGAAGC 59.252 52.381 0.00 0.00 43.84 3.86
477 478 2.620108 GCCATTCTTGGGAAGAGAAGCT 60.620 50.000 0.00 0.00 43.84 3.74
478 479 3.370953 GCCATTCTTGGGAAGAGAAGCTA 60.371 47.826 0.00 0.00 43.84 3.32
479 480 4.450053 CCATTCTTGGGAAGAGAAGCTAG 58.550 47.826 0.00 0.00 39.56 3.42
480 481 3.618690 TTCTTGGGAAGAGAAGCTAGC 57.381 47.619 6.62 6.62 39.03 3.42
481 482 1.834263 TCTTGGGAAGAGAAGCTAGCC 59.166 52.381 12.13 0.00 32.71 3.93
482 483 0.912486 TTGGGAAGAGAAGCTAGCCC 59.088 55.000 12.13 3.61 40.20 5.19
483 484 1.330655 TGGGAAGAGAAGCTAGCCCG 61.331 60.000 12.13 0.00 41.79 6.13
484 485 1.227409 GGAAGAGAAGCTAGCCCGC 60.227 63.158 12.13 5.71 0.00 6.13
485 486 1.227409 GAAGAGAAGCTAGCCCGCC 60.227 63.158 12.13 0.00 0.00 6.13
486 487 1.961180 GAAGAGAAGCTAGCCCGCCA 61.961 60.000 12.13 0.00 0.00 5.69
487 488 1.341156 AAGAGAAGCTAGCCCGCCAT 61.341 55.000 12.13 0.00 0.00 4.40
488 489 1.147153 GAGAAGCTAGCCCGCCATT 59.853 57.895 12.13 0.00 0.00 3.16
489 490 0.393077 GAGAAGCTAGCCCGCCATTA 59.607 55.000 12.13 0.00 0.00 1.90
490 491 0.837272 AGAAGCTAGCCCGCCATTAA 59.163 50.000 12.13 0.00 0.00 1.40
491 492 1.202698 AGAAGCTAGCCCGCCATTAAG 60.203 52.381 12.13 0.00 0.00 1.85
492 493 0.179018 AAGCTAGCCCGCCATTAAGG 60.179 55.000 12.13 0.00 41.84 2.69
493 494 1.054406 AGCTAGCCCGCCATTAAGGA 61.054 55.000 12.13 0.00 41.22 3.36
494 495 0.179029 GCTAGCCCGCCATTAAGGAA 60.179 55.000 2.29 0.00 41.22 3.36
495 496 1.749286 GCTAGCCCGCCATTAAGGAAA 60.749 52.381 2.29 0.00 41.22 3.13
496 497 2.222027 CTAGCCCGCCATTAAGGAAAG 58.778 52.381 0.00 0.00 41.22 2.62
497 498 1.037579 AGCCCGCCATTAAGGAAAGC 61.038 55.000 0.00 0.00 41.22 3.51
498 499 1.319614 GCCCGCCATTAAGGAAAGCA 61.320 55.000 0.00 0.00 41.22 3.91
499 500 0.740737 CCCGCCATTAAGGAAAGCAG 59.259 55.000 0.00 0.00 41.22 4.24
500 501 1.463674 CCGCCATTAAGGAAAGCAGT 58.536 50.000 0.00 0.00 41.22 4.40
501 502 2.639065 CCGCCATTAAGGAAAGCAGTA 58.361 47.619 0.00 0.00 41.22 2.74
502 503 3.214328 CCGCCATTAAGGAAAGCAGTAT 58.786 45.455 0.00 0.00 41.22 2.12
503 504 3.003689 CCGCCATTAAGGAAAGCAGTATG 59.996 47.826 0.00 0.00 41.22 2.39
504 505 3.627577 CGCCATTAAGGAAAGCAGTATGT 59.372 43.478 0.00 0.00 41.22 2.29
505 506 4.096382 CGCCATTAAGGAAAGCAGTATGTT 59.904 41.667 0.00 0.00 41.22 2.71
506 507 5.582550 GCCATTAAGGAAAGCAGTATGTTC 58.417 41.667 0.00 0.00 41.22 3.18
507 508 5.125417 GCCATTAAGGAAAGCAGTATGTTCA 59.875 40.000 0.00 0.00 41.22 3.18
508 509 6.350110 GCCATTAAGGAAAGCAGTATGTTCAA 60.350 38.462 0.00 0.00 41.22 2.69
509 510 7.029563 CCATTAAGGAAAGCAGTATGTTCAAC 58.970 38.462 0.00 0.00 41.22 3.18
510 511 7.309133 CCATTAAGGAAAGCAGTATGTTCAACA 60.309 37.037 0.00 0.00 41.22 3.33
511 512 5.438761 AAGGAAAGCAGTATGTTCAACAC 57.561 39.130 0.00 0.00 39.31 3.32
512 513 4.718961 AGGAAAGCAGTATGTTCAACACT 58.281 39.130 0.00 0.00 39.31 3.55
513 514 5.133221 AGGAAAGCAGTATGTTCAACACTT 58.867 37.500 0.00 0.00 39.31 3.16
514 515 6.296026 AGGAAAGCAGTATGTTCAACACTTA 58.704 36.000 0.00 0.00 39.31 2.24
515 516 6.770785 AGGAAAGCAGTATGTTCAACACTTAA 59.229 34.615 0.00 0.00 39.31 1.85
516 517 7.284489 AGGAAAGCAGTATGTTCAACACTTAAA 59.716 33.333 0.00 0.00 39.31 1.52
517 518 7.378728 GGAAAGCAGTATGTTCAACACTTAAAC 59.621 37.037 0.00 0.00 39.31 2.01
518 519 6.313744 AGCAGTATGTTCAACACTTAAACC 57.686 37.500 0.00 0.00 39.31 3.27
519 520 5.825679 AGCAGTATGTTCAACACTTAAACCA 59.174 36.000 0.00 0.00 39.31 3.67
520 521 6.017109 AGCAGTATGTTCAACACTTAAACCAG 60.017 38.462 0.00 0.00 39.31 4.00
521 522 6.142817 CAGTATGTTCAACACTTAAACCAGC 58.857 40.000 0.00 0.00 0.00 4.85
522 523 5.825679 AGTATGTTCAACACTTAAACCAGCA 59.174 36.000 0.00 0.00 0.00 4.41
523 524 5.789643 ATGTTCAACACTTAAACCAGCAT 57.210 34.783 0.00 0.00 0.00 3.79
524 525 4.930963 TGTTCAACACTTAAACCAGCATG 58.069 39.130 0.00 0.00 0.00 4.06
525 526 4.642437 TGTTCAACACTTAAACCAGCATGA 59.358 37.500 0.00 0.00 39.69 3.07
526 527 5.215160 GTTCAACACTTAAACCAGCATGAG 58.785 41.667 0.00 0.00 39.69 2.90
527 528 4.713553 TCAACACTTAAACCAGCATGAGA 58.286 39.130 0.00 0.00 39.69 3.27
528 529 5.316167 TCAACACTTAAACCAGCATGAGAT 58.684 37.500 0.00 0.00 39.69 2.75
529 530 5.181811 TCAACACTTAAACCAGCATGAGATG 59.818 40.000 0.00 0.00 39.69 2.90
530 531 4.910195 ACACTTAAACCAGCATGAGATGA 58.090 39.130 0.00 0.00 39.69 2.92
531 532 5.316167 ACACTTAAACCAGCATGAGATGAA 58.684 37.500 0.00 0.00 39.69 2.57
532 533 5.413833 ACACTTAAACCAGCATGAGATGAAG 59.586 40.000 0.00 0.00 39.69 3.02
533 534 4.397417 ACTTAAACCAGCATGAGATGAAGC 59.603 41.667 0.00 0.00 39.69 3.86
534 535 2.502142 AACCAGCATGAGATGAAGCA 57.498 45.000 0.00 0.00 39.69 3.91
535 536 2.502142 ACCAGCATGAGATGAAGCAA 57.498 45.000 0.00 0.00 39.69 3.91
536 537 2.366533 ACCAGCATGAGATGAAGCAAG 58.633 47.619 0.00 0.00 39.69 4.01
537 538 1.676529 CCAGCATGAGATGAAGCAAGG 59.323 52.381 0.00 0.00 39.69 3.61
538 539 2.366533 CAGCATGAGATGAAGCAAGGT 58.633 47.619 0.00 0.00 39.69 3.50
539 540 3.538591 CAGCATGAGATGAAGCAAGGTA 58.461 45.455 0.00 0.00 39.69 3.08
540 541 4.135306 CAGCATGAGATGAAGCAAGGTAT 58.865 43.478 0.00 0.00 39.69 2.73
541 542 4.579340 CAGCATGAGATGAAGCAAGGTATT 59.421 41.667 0.00 0.00 39.69 1.89
542 543 5.761726 CAGCATGAGATGAAGCAAGGTATTA 59.238 40.000 0.00 0.00 39.69 0.98
543 544 6.430308 CAGCATGAGATGAAGCAAGGTATTAT 59.570 38.462 0.00 0.00 39.69 1.28
544 545 6.430308 AGCATGAGATGAAGCAAGGTATTATG 59.570 38.462 0.00 0.00 0.00 1.90
545 546 6.429078 GCATGAGATGAAGCAAGGTATTATGA 59.571 38.462 0.00 0.00 0.00 2.15
546 547 7.361031 GCATGAGATGAAGCAAGGTATTATGAG 60.361 40.741 0.00 0.00 0.00 2.90
547 548 6.528321 TGAGATGAAGCAAGGTATTATGAGG 58.472 40.000 0.00 0.00 0.00 3.86
548 549 5.312079 AGATGAAGCAAGGTATTATGAGGC 58.688 41.667 0.00 0.00 0.00 4.70
549 550 4.502105 TGAAGCAAGGTATTATGAGGCA 57.498 40.909 0.00 0.00 0.00 4.75
550 551 4.854173 TGAAGCAAGGTATTATGAGGCAA 58.146 39.130 0.00 0.00 0.00 4.52
551 552 5.260424 TGAAGCAAGGTATTATGAGGCAAA 58.740 37.500 0.00 0.00 0.00 3.68
552 553 5.714333 TGAAGCAAGGTATTATGAGGCAAAA 59.286 36.000 0.00 0.00 0.00 2.44
553 554 6.380846 TGAAGCAAGGTATTATGAGGCAAAAT 59.619 34.615 0.00 0.00 0.00 1.82
554 555 7.559533 TGAAGCAAGGTATTATGAGGCAAAATA 59.440 33.333 0.00 0.00 0.00 1.40
555 556 7.277174 AGCAAGGTATTATGAGGCAAAATAC 57.723 36.000 0.00 0.00 36.02 1.89
556 557 6.833416 AGCAAGGTATTATGAGGCAAAATACA 59.167 34.615 6.74 0.00 37.67 2.29
557 558 7.013655 AGCAAGGTATTATGAGGCAAAATACAG 59.986 37.037 6.74 0.00 37.67 2.74
558 559 7.201821 GCAAGGTATTATGAGGCAAAATACAGT 60.202 37.037 6.74 0.00 37.67 3.55
559 560 9.337396 CAAGGTATTATGAGGCAAAATACAGTA 57.663 33.333 6.74 0.00 37.67 2.74
560 561 9.561069 AAGGTATTATGAGGCAAAATACAGTAG 57.439 33.333 6.74 0.00 37.67 2.57
561 562 8.714906 AGGTATTATGAGGCAAAATACAGTAGT 58.285 33.333 6.74 0.00 37.67 2.73
562 563 9.338622 GGTATTATGAGGCAAAATACAGTAGTT 57.661 33.333 6.74 0.00 37.67 2.24
640 641 6.021030 TCAGAACCCTACAAAGTACATACCT 58.979 40.000 0.00 0.00 0.00 3.08
656 657 0.929244 ACCTCCCAGGCAGCAATAAT 59.071 50.000 0.00 0.00 39.63 1.28
657 658 1.288932 ACCTCCCAGGCAGCAATAATT 59.711 47.619 0.00 0.00 39.63 1.40
681 682 0.180642 TGGAACAGTGTAACGGCCAA 59.819 50.000 2.24 0.00 45.86 4.52
722 723 7.045126 GTAGCATACCTTCAGATAACAGACT 57.955 40.000 0.00 0.00 34.89 3.24
741 742 2.104111 ACTCATCCAAACGACCACTCAA 59.896 45.455 0.00 0.00 0.00 3.02
742 743 2.738846 CTCATCCAAACGACCACTCAAG 59.261 50.000 0.00 0.00 0.00 3.02
743 744 1.806542 CATCCAAACGACCACTCAAGG 59.193 52.381 0.00 0.00 0.00 3.61
744 745 0.834612 TCCAAACGACCACTCAAGGT 59.165 50.000 0.00 0.00 46.82 3.50
745 746 2.040939 TCCAAACGACCACTCAAGGTA 58.959 47.619 0.00 0.00 43.38 3.08
746 747 2.435069 TCCAAACGACCACTCAAGGTAA 59.565 45.455 0.00 0.00 43.38 2.85
747 748 2.546789 CCAAACGACCACTCAAGGTAAC 59.453 50.000 0.00 0.00 43.38 2.50
748 749 3.199677 CAAACGACCACTCAAGGTAACA 58.800 45.455 0.00 0.00 43.38 2.41
749 750 3.547054 AACGACCACTCAAGGTAACAA 57.453 42.857 0.00 0.00 43.38 2.83
750 751 3.547054 ACGACCACTCAAGGTAACAAA 57.453 42.857 0.00 0.00 43.38 2.83
751 752 3.200483 ACGACCACTCAAGGTAACAAAC 58.800 45.455 0.00 0.00 43.38 2.93
949 1140 3.133946 CTAGGAGGGCTTCGGCTC 58.866 66.667 0.00 0.00 42.91 4.70
1935 2564 0.179156 GAACGGCGTTCACCTATCGA 60.179 55.000 39.05 0.00 41.62 3.59
2207 2844 0.907704 TGTATCTCCTGGCCGGTTGT 60.908 55.000 11.58 0.00 0.00 3.32
2255 2892 5.407407 TCTTCTTGAGCCTTCGTTCTAAT 57.593 39.130 0.00 0.00 0.00 1.73
2284 2921 1.875514 GGTAACAAACCCTCGAACACC 59.124 52.381 0.00 0.00 43.16 4.16
2285 2922 1.875514 GTAACAAACCCTCGAACACCC 59.124 52.381 0.00 0.00 0.00 4.61
2286 2923 0.549469 AACAAACCCTCGAACACCCT 59.451 50.000 0.00 0.00 0.00 4.34
2287 2924 0.179029 ACAAACCCTCGAACACCCTG 60.179 55.000 0.00 0.00 0.00 4.45
2288 2925 0.179029 CAAACCCTCGAACACCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
2289 2926 0.549469 AAACCCTCGAACACCCTGTT 59.451 50.000 0.00 0.00 44.37 3.16
2290 2927 0.179029 AACCCTCGAACACCCTGTTG 60.179 55.000 0.00 0.00 41.28 3.33
2291 2928 1.342672 ACCCTCGAACACCCTGTTGT 61.343 55.000 0.00 0.00 41.28 3.32
2292 2929 0.179029 CCCTCGAACACCCTGTTGTT 60.179 55.000 0.00 0.00 41.28 2.83
2293 2930 1.071071 CCCTCGAACACCCTGTTGTTA 59.929 52.381 0.00 0.00 41.28 2.41
2294 2931 2.140717 CCTCGAACACCCTGTTGTTAC 58.859 52.381 0.00 0.00 41.28 2.50
2295 2932 1.790623 CTCGAACACCCTGTTGTTACG 59.209 52.381 0.00 0.00 41.28 3.18
2296 2933 1.136695 TCGAACACCCTGTTGTTACGT 59.863 47.619 0.00 0.00 41.28 3.57
2297 2934 1.935199 CGAACACCCTGTTGTTACGTT 59.065 47.619 0.00 0.00 41.28 3.99
2298 2935 2.033492 CGAACACCCTGTTGTTACGTTC 60.033 50.000 0.00 0.00 41.28 3.95
2299 2936 2.994186 ACACCCTGTTGTTACGTTCT 57.006 45.000 0.00 0.00 0.00 3.01
2300 2937 3.271055 ACACCCTGTTGTTACGTTCTT 57.729 42.857 0.00 0.00 0.00 2.52
2301 2938 3.613030 ACACCCTGTTGTTACGTTCTTT 58.387 40.909 0.00 0.00 0.00 2.52
2302 2939 3.624410 ACACCCTGTTGTTACGTTCTTTC 59.376 43.478 0.00 0.00 0.00 2.62
2303 2940 3.875134 CACCCTGTTGTTACGTTCTTTCT 59.125 43.478 0.00 0.00 0.00 2.52
2304 2941 3.875134 ACCCTGTTGTTACGTTCTTTCTG 59.125 43.478 0.00 0.00 0.00 3.02
2305 2942 4.124238 CCCTGTTGTTACGTTCTTTCTGA 58.876 43.478 0.00 0.00 0.00 3.27
2306 2943 4.573201 CCCTGTTGTTACGTTCTTTCTGAA 59.427 41.667 0.00 0.00 0.00 3.02
2307 2944 5.238650 CCCTGTTGTTACGTTCTTTCTGAAT 59.761 40.000 0.00 0.00 36.99 2.57
2308 2945 6.136071 CCTGTTGTTACGTTCTTTCTGAATG 58.864 40.000 0.00 0.00 44.87 2.67
2309 2946 6.018262 CCTGTTGTTACGTTCTTTCTGAATGA 60.018 38.462 0.00 2.19 42.68 2.57
2310 2947 7.310072 TGTTGTTACGTTCTTTCTGAATGAA 57.690 32.000 12.96 12.96 42.68 2.57
2311 2948 7.406553 TGTTGTTACGTTCTTTCTGAATGAAG 58.593 34.615 16.27 13.09 42.68 3.02
2312 2949 7.065324 TGTTGTTACGTTCTTTCTGAATGAAGT 59.935 33.333 16.27 16.65 42.68 3.01
2313 2950 8.545420 GTTGTTACGTTCTTTCTGAATGAAGTA 58.455 33.333 16.27 15.94 42.68 2.24
2314 2951 8.827177 TGTTACGTTCTTTCTGAATGAAGTAT 57.173 30.769 16.27 9.24 42.68 2.12
2315 2952 9.917129 TGTTACGTTCTTTCTGAATGAAGTATA 57.083 29.630 16.27 8.50 42.68 1.47
2319 2956 9.141400 ACGTTCTTTCTGAATGAAGTATAAGAC 57.859 33.333 16.27 5.19 42.68 3.01
2320 2957 8.596380 CGTTCTTTCTGAATGAAGTATAAGACC 58.404 37.037 16.27 4.13 42.68 3.85
2321 2958 9.436957 GTTCTTTCTGAATGAAGTATAAGACCA 57.563 33.333 16.27 0.00 36.99 4.02
2323 2960 9.658799 TCTTTCTGAATGAAGTATAAGACCAAG 57.341 33.333 3.74 0.00 35.89 3.61
2324 2961 9.658799 CTTTCTGAATGAAGTATAAGACCAAGA 57.341 33.333 0.00 0.00 35.89 3.02
2342 2979 9.520515 AGACCAAGATAACAACAATGATTAACT 57.479 29.630 0.00 0.00 0.00 2.24
2352 2989 8.682936 ACAACAATGATTAACTTCTCTTGTCT 57.317 30.769 0.00 0.00 0.00 3.41
2353 2990 8.562892 ACAACAATGATTAACTTCTCTTGTCTG 58.437 33.333 0.00 0.00 0.00 3.51
2354 2991 8.777413 CAACAATGATTAACTTCTCTTGTCTGA 58.223 33.333 0.00 0.00 0.00 3.27
2355 2992 8.908786 ACAATGATTAACTTCTCTTGTCTGAA 57.091 30.769 0.00 0.00 0.00 3.02
2356 2993 9.512588 ACAATGATTAACTTCTCTTGTCTGAAT 57.487 29.630 0.00 0.00 0.00 2.57
2357 2994 9.985318 CAATGATTAACTTCTCTTGTCTGAATC 57.015 33.333 0.00 0.00 0.00 2.52
2358 2995 9.956640 AATGATTAACTTCTCTTGTCTGAATCT 57.043 29.630 0.00 0.00 0.00 2.40
2359 2996 8.994429 TGATTAACTTCTCTTGTCTGAATCTC 57.006 34.615 0.00 0.00 0.00 2.75
2360 2997 8.588472 TGATTAACTTCTCTTGTCTGAATCTCA 58.412 33.333 0.00 0.00 0.00 3.27
2361 2998 9.598517 GATTAACTTCTCTTGTCTGAATCTCAT 57.401 33.333 0.00 0.00 0.00 2.90
2371 3008 9.671279 TCTTGTCTGAATCTCATAATAAAAGCA 57.329 29.630 0.00 0.00 0.00 3.91
2392 3029 7.751047 AGCATTCTGAATTTTTGATCAATCG 57.249 32.000 9.40 1.43 0.00 3.34
2393 3030 7.541162 AGCATTCTGAATTTTTGATCAATCGA 58.459 30.769 9.40 3.62 0.00 3.59
2394 3031 8.195436 AGCATTCTGAATTTTTGATCAATCGAT 58.805 29.630 9.40 0.00 33.31 3.59
2395 3032 8.266682 GCATTCTGAATTTTTGATCAATCGATG 58.733 33.333 9.40 10.01 29.66 3.84
2396 3033 9.297586 CATTCTGAATTTTTGATCAATCGATGT 57.702 29.630 9.40 0.00 29.66 3.06
2397 3034 8.900511 TTCTGAATTTTTGATCAATCGATGTC 57.099 30.769 9.40 3.59 29.66 3.06
2398 3035 7.475015 TCTGAATTTTTGATCAATCGATGTCC 58.525 34.615 9.40 0.00 29.66 4.02
2399 3036 7.337689 TCTGAATTTTTGATCAATCGATGTCCT 59.662 33.333 9.40 0.00 29.66 3.85
2400 3037 7.475015 TGAATTTTTGATCAATCGATGTCCTC 58.525 34.615 9.40 0.00 29.66 3.71
2408 3045 2.885113 CGATGTCCTCGCCACTCA 59.115 61.111 0.00 0.00 41.14 3.41
2409 3046 1.517257 CGATGTCCTCGCCACTCAC 60.517 63.158 0.00 0.00 41.14 3.51
2410 3047 1.591703 GATGTCCTCGCCACTCACA 59.408 57.895 0.00 0.00 0.00 3.58
2411 3048 0.176680 GATGTCCTCGCCACTCACAT 59.823 55.000 0.00 0.00 0.00 3.21
2412 3049 0.107993 ATGTCCTCGCCACTCACATG 60.108 55.000 0.00 0.00 0.00 3.21
2413 3050 1.293498 GTCCTCGCCACTCACATGT 59.707 57.895 0.00 0.00 0.00 3.21
2414 3051 1.016130 GTCCTCGCCACTCACATGTG 61.016 60.000 20.18 20.18 37.66 3.21
2415 3052 1.004560 CCTCGCCACTCACATGTGT 60.005 57.895 24.63 4.31 36.30 3.72
2416 3053 0.246360 CCTCGCCACTCACATGTGTA 59.754 55.000 24.63 11.15 36.30 2.90
2417 3054 1.134699 CCTCGCCACTCACATGTGTAT 60.135 52.381 24.63 11.80 36.30 2.29
2418 3055 2.621338 CTCGCCACTCACATGTGTATT 58.379 47.619 24.63 8.12 36.30 1.89
2419 3056 2.604914 CTCGCCACTCACATGTGTATTC 59.395 50.000 24.63 10.80 36.30 1.75
2420 3057 2.233676 TCGCCACTCACATGTGTATTCT 59.766 45.455 24.63 2.15 36.30 2.40
2421 3058 2.604914 CGCCACTCACATGTGTATTCTC 59.395 50.000 24.63 10.34 36.30 2.87
2422 3059 3.677148 CGCCACTCACATGTGTATTCTCT 60.677 47.826 24.63 0.00 36.30 3.10
2423 3060 4.256920 GCCACTCACATGTGTATTCTCTT 58.743 43.478 24.63 0.00 36.30 2.85
2424 3061 5.419542 GCCACTCACATGTGTATTCTCTTA 58.580 41.667 24.63 1.89 36.30 2.10
2425 3062 6.051717 GCCACTCACATGTGTATTCTCTTAT 58.948 40.000 24.63 0.00 36.30 1.73
2426 3063 6.201806 GCCACTCACATGTGTATTCTCTTATC 59.798 42.308 24.63 1.57 36.30 1.75
2427 3064 7.495901 CCACTCACATGTGTATTCTCTTATCT 58.504 38.462 24.63 0.00 36.30 1.98
2428 3065 7.651304 CCACTCACATGTGTATTCTCTTATCTC 59.349 40.741 24.63 0.00 36.30 2.75
2429 3066 8.412456 CACTCACATGTGTATTCTCTTATCTCT 58.588 37.037 24.63 0.00 33.61 3.10
2430 3067 8.412456 ACTCACATGTGTATTCTCTTATCTCTG 58.588 37.037 24.63 0.00 0.00 3.35
2431 3068 7.720442 TCACATGTGTATTCTCTTATCTCTGG 58.280 38.462 24.63 0.00 0.00 3.86
2432 3069 7.343057 TCACATGTGTATTCTCTTATCTCTGGT 59.657 37.037 24.63 0.00 0.00 4.00
2433 3070 7.984050 CACATGTGTATTCTCTTATCTCTGGTT 59.016 37.037 18.03 0.00 0.00 3.67
2434 3071 8.200792 ACATGTGTATTCTCTTATCTCTGGTTC 58.799 37.037 0.00 0.00 0.00 3.62
2435 3072 7.718334 TGTGTATTCTCTTATCTCTGGTTCA 57.282 36.000 0.00 0.00 0.00 3.18
2436 3073 7.548097 TGTGTATTCTCTTATCTCTGGTTCAC 58.452 38.462 0.00 0.00 0.00 3.18
2437 3074 7.178451 TGTGTATTCTCTTATCTCTGGTTCACA 59.822 37.037 0.00 0.00 0.00 3.58
2438 3075 8.200792 GTGTATTCTCTTATCTCTGGTTCACAT 58.799 37.037 0.00 0.00 0.00 3.21
2439 3076 9.421399 TGTATTCTCTTATCTCTGGTTCACATA 57.579 33.333 0.00 0.00 0.00 2.29
2443 3080 9.605275 TTCTCTTATCTCTGGTTCACATAATTG 57.395 33.333 0.00 0.00 0.00 2.32
2444 3081 8.981659 TCTCTTATCTCTGGTTCACATAATTGA 58.018 33.333 0.00 0.00 0.00 2.57
2445 3082 8.948631 TCTTATCTCTGGTTCACATAATTGAC 57.051 34.615 0.00 0.00 0.00 3.18
2446 3083 8.539544 TCTTATCTCTGGTTCACATAATTGACA 58.460 33.333 0.00 0.00 0.00 3.58
2447 3084 9.166173 CTTATCTCTGGTTCACATAATTGACAA 57.834 33.333 0.00 0.00 0.00 3.18
2448 3085 9.685276 TTATCTCTGGTTCACATAATTGACAAT 57.315 29.630 0.00 0.00 0.00 2.71
2449 3086 7.615582 TCTCTGGTTCACATAATTGACAATC 57.384 36.000 0.05 0.00 0.00 2.67
2450 3087 7.397221 TCTCTGGTTCACATAATTGACAATCT 58.603 34.615 0.05 0.00 0.00 2.40
2451 3088 7.335171 TCTCTGGTTCACATAATTGACAATCTG 59.665 37.037 0.05 5.29 0.00 2.90
2452 3089 7.167535 TCTGGTTCACATAATTGACAATCTGA 58.832 34.615 14.40 5.96 0.00 3.27
2453 3090 7.830697 TCTGGTTCACATAATTGACAATCTGAT 59.169 33.333 14.40 2.31 0.00 2.90
2454 3091 7.988737 TGGTTCACATAATTGACAATCTGATC 58.011 34.615 14.40 7.29 0.00 2.92
2455 3092 7.067372 TGGTTCACATAATTGACAATCTGATCC 59.933 37.037 14.40 13.48 0.00 3.36
2456 3093 7.067372 GGTTCACATAATTGACAATCTGATCCA 59.933 37.037 14.40 0.00 0.00 3.41
2457 3094 8.627403 GTTCACATAATTGACAATCTGATCCAT 58.373 33.333 14.40 0.00 0.00 3.41
2458 3095 8.161699 TCACATAATTGACAATCTGATCCATG 57.838 34.615 14.40 7.25 0.00 3.66
2459 3096 6.861572 CACATAATTGACAATCTGATCCATGC 59.138 38.462 14.40 0.00 0.00 4.06
2460 3097 4.931661 AATTGACAATCTGATCCATGCC 57.068 40.909 0.05 0.00 0.00 4.40
2461 3098 3.657398 TTGACAATCTGATCCATGCCT 57.343 42.857 0.00 0.00 0.00 4.75
2462 3099 3.204306 TGACAATCTGATCCATGCCTC 57.796 47.619 0.00 0.00 0.00 4.70
2463 3100 2.506644 TGACAATCTGATCCATGCCTCA 59.493 45.455 0.00 0.00 0.00 3.86
2464 3101 2.877168 GACAATCTGATCCATGCCTCAC 59.123 50.000 0.00 0.00 0.00 3.51
2465 3102 2.228059 CAATCTGATCCATGCCTCACC 58.772 52.381 0.00 0.00 0.00 4.02
2466 3103 0.769873 ATCTGATCCATGCCTCACCC 59.230 55.000 0.00 0.00 0.00 4.61
2467 3104 1.150081 CTGATCCATGCCTCACCCC 59.850 63.158 0.00 0.00 0.00 4.95
2468 3105 1.619057 TGATCCATGCCTCACCCCA 60.619 57.895 0.00 0.00 0.00 4.96
2469 3106 1.213619 TGATCCATGCCTCACCCCAA 61.214 55.000 0.00 0.00 0.00 4.12
2470 3107 0.033208 GATCCATGCCTCACCCCAAA 60.033 55.000 0.00 0.00 0.00 3.28
2471 3108 0.638292 ATCCATGCCTCACCCCAAAT 59.362 50.000 0.00 0.00 0.00 2.32
2472 3109 1.303898 TCCATGCCTCACCCCAAATA 58.696 50.000 0.00 0.00 0.00 1.40
2473 3110 1.858910 TCCATGCCTCACCCCAAATAT 59.141 47.619 0.00 0.00 0.00 1.28
2474 3111 2.247111 TCCATGCCTCACCCCAAATATT 59.753 45.455 0.00 0.00 0.00 1.28
2475 3112 3.040477 CCATGCCTCACCCCAAATATTT 58.960 45.455 0.00 0.00 0.00 1.40
2476 3113 3.181463 CCATGCCTCACCCCAAATATTTG 60.181 47.826 19.40 19.40 37.90 2.32
2477 3114 3.182887 TGCCTCACCCCAAATATTTGT 57.817 42.857 23.24 5.81 36.45 2.83
2478 3115 4.323569 TGCCTCACCCCAAATATTTGTA 57.676 40.909 23.24 6.02 36.45 2.41
2479 3116 4.877773 TGCCTCACCCCAAATATTTGTAT 58.122 39.130 23.24 8.44 36.45 2.29
2480 3117 6.019656 TGCCTCACCCCAAATATTTGTATA 57.980 37.500 23.24 6.61 36.45 1.47
2481 3118 6.619464 TGCCTCACCCCAAATATTTGTATAT 58.381 36.000 23.24 6.56 36.45 0.86
2482 3119 6.719370 TGCCTCACCCCAAATATTTGTATATC 59.281 38.462 23.24 8.12 36.45 1.63
2483 3120 6.719370 GCCTCACCCCAAATATTTGTATATCA 59.281 38.462 23.24 5.45 36.45 2.15
2484 3121 7.397192 GCCTCACCCCAAATATTTGTATATCAT 59.603 37.037 23.24 2.90 36.45 2.45
2485 3122 8.960591 CCTCACCCCAAATATTTGTATATCATC 58.039 37.037 23.24 0.00 36.45 2.92
2486 3123 9.745018 CTCACCCCAAATATTTGTATATCATCT 57.255 33.333 23.24 0.00 36.45 2.90
2507 3144 9.462606 TCATCTTACTACTTGAATCTCTACACA 57.537 33.333 0.00 0.00 0.00 3.72
2517 3154 9.337396 ACTTGAATCTCTACACATAAACAAACA 57.663 29.630 0.00 0.00 0.00 2.83
2518 3155 9.599322 CTTGAATCTCTACACATAAACAAACAC 57.401 33.333 0.00 0.00 0.00 3.32
2519 3156 8.669946 TGAATCTCTACACATAAACAAACACA 57.330 30.769 0.00 0.00 0.00 3.72
2520 3157 8.556194 TGAATCTCTACACATAAACAAACACAC 58.444 33.333 0.00 0.00 0.00 3.82
2521 3158 8.445275 AATCTCTACACATAAACAAACACACA 57.555 30.769 0.00 0.00 0.00 3.72
2522 3159 8.621532 ATCTCTACACATAAACAAACACACAT 57.378 30.769 0.00 0.00 0.00 3.21
2523 3160 8.445275 TCTCTACACATAAACAAACACACATT 57.555 30.769 0.00 0.00 0.00 2.71
2524 3161 8.556194 TCTCTACACATAAACAAACACACATTC 58.444 33.333 0.00 0.00 0.00 2.67
2525 3162 8.214721 TCTACACATAAACAAACACACATTCA 57.785 30.769 0.00 0.00 0.00 2.57
2526 3163 8.341903 TCTACACATAAACAAACACACATTCAG 58.658 33.333 0.00 0.00 0.00 3.02
2527 3164 6.272318 ACACATAAACAAACACACATTCAGG 58.728 36.000 0.00 0.00 0.00 3.86
2528 3165 5.175491 CACATAAACAAACACACATTCAGGC 59.825 40.000 0.00 0.00 0.00 4.85
2529 3166 3.883830 AAACAAACACACATTCAGGCA 57.116 38.095 0.00 0.00 0.00 4.75
2530 3167 4.405116 AAACAAACACACATTCAGGCAT 57.595 36.364 0.00 0.00 0.00 4.40
2531 3168 4.405116 AACAAACACACATTCAGGCATT 57.595 36.364 0.00 0.00 0.00 3.56
2532 3169 3.719924 ACAAACACACATTCAGGCATTG 58.280 40.909 0.00 0.00 0.00 2.82
2533 3170 3.384146 ACAAACACACATTCAGGCATTGA 59.616 39.130 0.00 0.00 0.00 2.57
2560 3197 6.959671 AAGAGAGAGTCAAATAAAGAAGCG 57.040 37.500 0.00 0.00 0.00 4.68
2561 3198 6.274157 AGAGAGAGTCAAATAAAGAAGCGA 57.726 37.500 0.00 0.00 0.00 4.93
2562 3199 6.329496 AGAGAGAGTCAAATAAAGAAGCGAG 58.671 40.000 0.00 0.00 0.00 5.03
2563 3200 5.415221 AGAGAGTCAAATAAAGAAGCGAGG 58.585 41.667 0.00 0.00 0.00 4.63
2564 3201 5.186021 AGAGAGTCAAATAAAGAAGCGAGGA 59.814 40.000 0.00 0.00 0.00 3.71
2565 3202 5.794894 AGAGTCAAATAAAGAAGCGAGGAA 58.205 37.500 0.00 0.00 0.00 3.36
2566 3203 5.872070 AGAGTCAAATAAAGAAGCGAGGAAG 59.128 40.000 0.00 0.00 0.00 3.46
2567 3204 5.794894 AGTCAAATAAAGAAGCGAGGAAGA 58.205 37.500 0.00 0.00 0.00 2.87
2568 3205 5.872070 AGTCAAATAAAGAAGCGAGGAAGAG 59.128 40.000 0.00 0.00 0.00 2.85
2569 3206 4.631813 TCAAATAAAGAAGCGAGGAAGAGC 59.368 41.667 0.00 0.00 0.00 4.09
2570 3207 2.674796 TAAAGAAGCGAGGAAGAGCC 57.325 50.000 0.00 0.00 0.00 4.70
2580 3217 3.851051 GGAAGAGCCTGGACTGAAG 57.149 57.895 0.00 0.00 0.00 3.02
2581 3218 0.251634 GGAAGAGCCTGGACTGAAGG 59.748 60.000 0.00 0.00 37.91 3.46
2582 3219 0.980423 GAAGAGCCTGGACTGAAGGT 59.020 55.000 0.00 0.00 37.13 3.50
2583 3220 0.689623 AAGAGCCTGGACTGAAGGTG 59.310 55.000 0.00 0.00 37.13 4.00
2584 3221 0.472734 AGAGCCTGGACTGAAGGTGT 60.473 55.000 0.00 0.00 37.13 4.16
2585 3222 0.398318 GAGCCTGGACTGAAGGTGTT 59.602 55.000 0.00 0.00 37.13 3.32
2586 3223 0.398318 AGCCTGGACTGAAGGTGTTC 59.602 55.000 0.00 0.00 37.13 3.18
2587 3224 0.606673 GCCTGGACTGAAGGTGTTCC 60.607 60.000 0.00 0.00 37.13 3.62
2589 3226 1.002544 CCTGGACTGAAGGTGTTCCTC 59.997 57.143 0.00 0.00 44.35 3.71
2590 3227 1.002544 CTGGACTGAAGGTGTTCCTCC 59.997 57.143 0.00 0.00 44.35 4.30
2591 3228 1.353091 GGACTGAAGGTGTTCCTCCT 58.647 55.000 0.00 0.00 44.35 3.69
2592 3229 1.002544 GGACTGAAGGTGTTCCTCCTG 59.997 57.143 0.00 0.00 44.35 3.86
2593 3230 1.971357 GACTGAAGGTGTTCCTCCTGA 59.029 52.381 0.00 0.00 44.35 3.86
2594 3231 2.569404 GACTGAAGGTGTTCCTCCTGAT 59.431 50.000 0.00 0.00 44.35 2.90
2595 3232 2.569404 ACTGAAGGTGTTCCTCCTGATC 59.431 50.000 0.00 0.00 44.35 2.92
2596 3233 1.909302 TGAAGGTGTTCCTCCTGATCC 59.091 52.381 0.00 0.00 44.35 3.36
2597 3234 1.210722 GAAGGTGTTCCTCCTGATCCC 59.789 57.143 0.00 0.00 44.35 3.85
2598 3235 0.621862 AGGTGTTCCTCCTGATCCCC 60.622 60.000 0.00 0.00 40.58 4.81
2599 3236 0.914417 GGTGTTCCTCCTGATCCCCA 60.914 60.000 0.00 0.00 0.00 4.96
2600 3237 0.991920 GTGTTCCTCCTGATCCCCAA 59.008 55.000 0.00 0.00 0.00 4.12
2601 3238 0.991920 TGTTCCTCCTGATCCCCAAC 59.008 55.000 0.00 0.00 0.00 3.77
2602 3239 0.991920 GTTCCTCCTGATCCCCAACA 59.008 55.000 0.00 0.00 0.00 3.33
2603 3240 1.065126 GTTCCTCCTGATCCCCAACAG 60.065 57.143 0.00 0.00 0.00 3.16
2604 3241 0.119155 TCCTCCTGATCCCCAACAGT 59.881 55.000 0.00 0.00 32.93 3.55
2605 3242 0.254178 CCTCCTGATCCCCAACAGTG 59.746 60.000 0.00 0.00 32.93 3.66
2606 3243 0.393537 CTCCTGATCCCCAACAGTGC 60.394 60.000 0.00 0.00 32.93 4.40
2607 3244 1.746615 CCTGATCCCCAACAGTGCG 60.747 63.158 0.00 0.00 32.93 5.34
2608 3245 2.359850 TGATCCCCAACAGTGCGC 60.360 61.111 0.00 0.00 0.00 6.09
2609 3246 3.134127 GATCCCCAACAGTGCGCC 61.134 66.667 4.18 0.00 0.00 6.53
2610 3247 3.628646 GATCCCCAACAGTGCGCCT 62.629 63.158 4.18 0.00 0.00 5.52
2611 3248 3.628646 ATCCCCAACAGTGCGCCTC 62.629 63.158 4.18 0.00 0.00 4.70
2613 3250 4.335647 CCCAACAGTGCGCCTCCT 62.336 66.667 4.18 0.00 0.00 3.69
2614 3251 2.662596 CCAACAGTGCGCCTCCTA 59.337 61.111 4.18 0.00 0.00 2.94
2615 3252 1.003839 CCAACAGTGCGCCTCCTAA 60.004 57.895 4.18 0.00 0.00 2.69
2616 3253 1.021390 CCAACAGTGCGCCTCCTAAG 61.021 60.000 4.18 0.00 0.00 2.18
2617 3254 1.021390 CAACAGTGCGCCTCCTAAGG 61.021 60.000 4.18 0.00 46.44 2.69
2628 3265 2.579873 CCTCCTAAGGCATGGTCAATG 58.420 52.381 0.00 0.00 39.49 2.82
2629 3266 2.579873 CTCCTAAGGCATGGTCAATGG 58.420 52.381 0.00 0.00 36.71 3.16
2630 3267 2.173356 CTCCTAAGGCATGGTCAATGGA 59.827 50.000 0.00 0.00 36.71 3.41
2631 3268 2.173356 TCCTAAGGCATGGTCAATGGAG 59.827 50.000 0.00 0.00 36.71 3.86
2632 3269 1.952296 CTAAGGCATGGTCAATGGAGC 59.048 52.381 0.00 0.00 41.89 4.70
2633 3270 0.685458 AAGGCATGGTCAATGGAGCC 60.685 55.000 0.00 0.00 40.83 4.70
2634 3271 2.484062 GGCATGGTCAATGGAGCCG 61.484 63.158 0.00 0.00 40.83 5.52
2635 3272 2.484062 GCATGGTCAATGGAGCCGG 61.484 63.158 0.00 0.00 40.83 6.13
2636 3273 1.224315 CATGGTCAATGGAGCCGGA 59.776 57.895 5.05 0.00 40.83 5.14
2637 3274 1.097547 CATGGTCAATGGAGCCGGAC 61.098 60.000 5.05 0.00 40.83 4.79
2638 3275 1.561769 ATGGTCAATGGAGCCGGACA 61.562 55.000 5.05 0.00 40.83 4.02
2639 3276 1.450312 GGTCAATGGAGCCGGACAG 60.450 63.158 5.05 0.00 35.49 3.51
2640 3277 2.109126 GTCAATGGAGCCGGACAGC 61.109 63.158 5.05 0.00 0.00 4.40
2641 3278 3.197790 CAATGGAGCCGGACAGCG 61.198 66.667 5.05 0.00 38.01 5.18
2657 3294 4.820744 CGCCCTTCCCCCATGGTG 62.821 72.222 11.73 0.00 34.77 4.17
2658 3295 3.672503 GCCCTTCCCCCATGGTGT 61.673 66.667 11.73 0.00 34.77 4.16
2659 3296 3.190349 CCCTTCCCCCATGGTGTT 58.810 61.111 11.73 0.00 34.77 3.32
2660 3297 1.000359 CCCTTCCCCCATGGTGTTC 60.000 63.158 11.73 0.00 34.77 3.18
2661 3298 1.000359 CCTTCCCCCATGGTGTTCC 60.000 63.158 11.73 0.00 34.77 3.62
2662 3299 1.000359 CTTCCCCCATGGTGTTCCC 60.000 63.158 11.73 0.00 34.77 3.97
2663 3300 2.837031 CTTCCCCCATGGTGTTCCCG 62.837 65.000 11.73 0.00 35.15 5.14
2664 3301 3.334891 CCCCCATGGTGTTCCCGA 61.335 66.667 11.73 0.00 35.15 5.14
2665 3302 2.272146 CCCCATGGTGTTCCCGAG 59.728 66.667 11.73 0.00 35.15 4.63
2666 3303 2.438434 CCCATGGTGTTCCCGAGC 60.438 66.667 11.73 0.00 35.15 5.03
2667 3304 2.819595 CCATGGTGTTCCCGAGCG 60.820 66.667 2.57 0.00 35.15 5.03
2668 3305 2.819595 CATGGTGTTCCCGAGCGG 60.820 66.667 1.06 1.06 35.15 5.52
2669 3306 4.778143 ATGGTGTTCCCGAGCGGC 62.778 66.667 2.79 0.00 35.15 6.53
2685 3322 2.202932 GCGGACGACATCTGGCAT 60.203 61.111 0.00 0.00 33.81 4.40
2686 3323 2.528743 GCGGACGACATCTGGCATG 61.529 63.158 0.00 0.00 33.81 4.06
2687 3324 1.884464 CGGACGACATCTGGCATGG 60.884 63.158 0.00 0.00 0.00 3.66
2688 3325 1.524621 GGACGACATCTGGCATGGG 60.525 63.158 0.00 0.00 0.00 4.00
2689 3326 1.221840 GACGACATCTGGCATGGGT 59.778 57.895 0.00 0.00 0.00 4.51
2690 3327 1.078214 ACGACATCTGGCATGGGTG 60.078 57.895 0.00 0.00 0.00 4.61
2691 3328 1.820906 CGACATCTGGCATGGGTGG 60.821 63.158 0.00 0.00 0.00 4.61
2692 3329 1.609239 GACATCTGGCATGGGTGGA 59.391 57.895 0.00 0.00 0.00 4.02
2693 3330 0.465097 GACATCTGGCATGGGTGGAG 60.465 60.000 0.00 0.00 0.00 3.86
2694 3331 0.915872 ACATCTGGCATGGGTGGAGA 60.916 55.000 0.00 0.00 0.00 3.71
2695 3332 0.465097 CATCTGGCATGGGTGGAGAC 60.465 60.000 0.00 0.00 0.00 3.36
2696 3333 1.639635 ATCTGGCATGGGTGGAGACC 61.640 60.000 0.00 0.00 42.27 3.85
2704 3341 3.728772 GGTGGAGACCCCTTCCTC 58.271 66.667 0.00 0.00 36.03 3.71
2705 3342 1.081277 GGTGGAGACCCCTTCCTCT 59.919 63.158 0.00 0.00 36.03 3.69
2706 3343 0.978667 GGTGGAGACCCCTTCCTCTC 60.979 65.000 0.00 0.00 36.03 3.20
2707 3344 4.384720 GGAGACCCCTTCCTCTCC 57.615 66.667 0.00 0.00 44.59 3.71
2708 3345 1.758906 GGAGACCCCTTCCTCTCCG 60.759 68.421 0.00 0.00 42.52 4.63
2709 3346 2.364448 AGACCCCTTCCTCTCCGC 60.364 66.667 0.00 0.00 0.00 5.54
2710 3347 3.471806 GACCCCTTCCTCTCCGCC 61.472 72.222 0.00 0.00 0.00 6.13
2713 3350 3.009115 CCCTTCCTCTCCGCCCAA 61.009 66.667 0.00 0.00 0.00 4.12
2714 3351 2.586792 CCTTCCTCTCCGCCCAAG 59.413 66.667 0.00 0.00 0.00 3.61
2715 3352 2.586792 CTTCCTCTCCGCCCAAGG 59.413 66.667 0.00 0.00 0.00 3.61
2716 3353 1.990060 CTTCCTCTCCGCCCAAGGA 60.990 63.158 0.00 0.00 37.42 3.36
2717 3354 2.245438 CTTCCTCTCCGCCCAAGGAC 62.245 65.000 0.00 0.00 38.90 3.85
2718 3355 2.685380 CCTCTCCGCCCAAGGACT 60.685 66.667 0.00 0.00 36.14 3.85
2719 3356 2.581354 CTCTCCGCCCAAGGACTG 59.419 66.667 0.00 0.00 36.14 3.51
2720 3357 3.672295 CTCTCCGCCCAAGGACTGC 62.672 68.421 0.00 0.00 36.14 4.40
2721 3358 4.020617 CTCCGCCCAAGGACTGCA 62.021 66.667 0.00 0.00 36.14 4.41
2722 3359 3.965539 CTCCGCCCAAGGACTGCAG 62.966 68.421 13.48 13.48 36.14 4.41
2723 3360 4.335647 CCGCCCAAGGACTGCAGT 62.336 66.667 21.88 21.88 0.00 4.40
2724 3361 2.281761 CGCCCAAGGACTGCAGTT 60.282 61.111 22.65 2.27 0.00 3.16
2725 3362 2.328099 CGCCCAAGGACTGCAGTTC 61.328 63.158 22.65 20.35 0.00 3.01
2726 3363 2.328099 GCCCAAGGACTGCAGTTCG 61.328 63.158 22.65 6.95 0.00 3.95
2727 3364 1.371183 CCCAAGGACTGCAGTTCGA 59.629 57.895 22.65 0.00 0.00 3.71
2728 3365 0.036010 CCCAAGGACTGCAGTTCGAT 60.036 55.000 22.65 10.85 0.00 3.59
2729 3366 1.207089 CCCAAGGACTGCAGTTCGATA 59.793 52.381 22.65 0.00 0.00 2.92
2730 3367 2.354704 CCCAAGGACTGCAGTTCGATAA 60.355 50.000 22.65 0.00 0.00 1.75
2731 3368 2.673368 CCAAGGACTGCAGTTCGATAAC 59.327 50.000 22.65 5.82 35.72 1.89
2739 3376 3.050703 AGTTCGATAACTGGCGCTG 57.949 52.632 7.64 2.99 44.40 5.18
2740 3377 1.084370 AGTTCGATAACTGGCGCTGC 61.084 55.000 7.64 0.00 44.40 5.25
2753 3390 4.008933 GCTGCCGACCTGTCCTGT 62.009 66.667 0.00 0.00 0.00 4.00
2754 3391 2.262915 CTGCCGACCTGTCCTGTC 59.737 66.667 0.00 0.00 0.00 3.51
2755 3392 2.523168 TGCCGACCTGTCCTGTCA 60.523 61.111 0.00 0.00 32.91 3.58
2756 3393 2.099652 CTGCCGACCTGTCCTGTCAA 62.100 60.000 0.00 0.00 32.91 3.18
2757 3394 1.374758 GCCGACCTGTCCTGTCAAG 60.375 63.158 0.00 0.00 32.91 3.02
2758 3395 1.816863 GCCGACCTGTCCTGTCAAGA 61.817 60.000 0.00 0.00 32.91 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.161855 GGTGTCTGCAATGGAATGACA 58.838 47.619 0.00 0.00 35.62 3.58
2 3 2.440409 AGGTGTCTGCAATGGAATGAC 58.560 47.619 0.00 0.00 0.00 3.06
10 11 5.014858 AGATTGAATGAAGGTGTCTGCAAT 58.985 37.500 0.00 0.00 31.11 3.56
13 14 4.937620 TGTAGATTGAATGAAGGTGTCTGC 59.062 41.667 0.00 0.00 0.00 4.26
61 62 6.076981 ACACACAGAATTGAAGATTGGTTC 57.923 37.500 0.00 0.00 0.00 3.62
76 77 4.214986 TCCTTTCTGAACAACACACAGA 57.785 40.909 0.00 0.00 38.61 3.41
77 78 4.731773 GCTTCCTTTCTGAACAACACACAG 60.732 45.833 0.00 0.00 0.00 3.66
123 124 4.870123 TTTTAATTGCTCTGTGGCATGT 57.130 36.364 0.00 0.00 42.09 3.21
149 150 7.615403 ACTCTGTAGTGTGAATGTGTGATTAT 58.385 34.615 0.00 0.00 33.57 1.28
181 182 6.045955 GGTTCTTTTGGTTAATGTTCTGCAA 58.954 36.000 0.00 0.00 0.00 4.08
370 371 2.222027 CTTTCCTTAATGGCGGGCTAG 58.778 52.381 2.38 0.00 35.26 3.42
376 377 3.627577 ACATACTGCTTTCCTTAATGGCG 59.372 43.478 0.00 0.00 35.26 5.69
381 382 6.770785 AGTGTTGAACATACTGCTTTCCTTAA 59.229 34.615 0.00 0.00 0.00 1.85
451 452 4.040047 TCTCTTCCCAAGAATGGCTCATA 58.960 43.478 0.00 0.00 46.09 2.15
452 453 2.848694 TCTCTTCCCAAGAATGGCTCAT 59.151 45.455 0.00 0.00 46.09 2.90
453 454 2.269023 TCTCTTCCCAAGAATGGCTCA 58.731 47.619 0.00 0.00 46.09 4.26
454 455 3.277715 CTTCTCTTCCCAAGAATGGCTC 58.722 50.000 0.00 0.00 46.09 4.70
455 456 2.620108 GCTTCTCTTCCCAAGAATGGCT 60.620 50.000 0.00 0.00 46.09 4.75
456 457 1.747924 GCTTCTCTTCCCAAGAATGGC 59.252 52.381 0.00 0.00 46.09 4.40
458 459 3.876320 GCTAGCTTCTCTTCCCAAGAATG 59.124 47.826 7.70 0.00 37.02 2.67
459 460 3.118075 GGCTAGCTTCTCTTCCCAAGAAT 60.118 47.826 15.72 0.00 37.02 2.40
460 461 2.237392 GGCTAGCTTCTCTTCCCAAGAA 59.763 50.000 15.72 0.00 37.02 2.52
461 462 1.834263 GGCTAGCTTCTCTTCCCAAGA 59.166 52.381 15.72 0.00 35.87 3.02
462 463 1.134250 GGGCTAGCTTCTCTTCCCAAG 60.134 57.143 15.72 0.00 36.76 3.61
463 464 0.912486 GGGCTAGCTTCTCTTCCCAA 59.088 55.000 15.72 0.00 36.76 4.12
464 465 1.330655 CGGGCTAGCTTCTCTTCCCA 61.331 60.000 15.72 0.00 36.65 4.37
465 466 1.443828 CGGGCTAGCTTCTCTTCCC 59.556 63.158 15.72 3.40 34.74 3.97
466 467 1.227409 GCGGGCTAGCTTCTCTTCC 60.227 63.158 15.72 4.19 0.00 3.46
467 468 1.227409 GGCGGGCTAGCTTCTCTTC 60.227 63.158 15.72 0.00 37.29 2.87
468 469 1.341156 ATGGCGGGCTAGCTTCTCTT 61.341 55.000 15.72 0.00 37.29 2.85
469 470 1.341156 AATGGCGGGCTAGCTTCTCT 61.341 55.000 15.72 0.00 37.29 3.10
470 471 0.393077 TAATGGCGGGCTAGCTTCTC 59.607 55.000 15.72 2.47 37.29 2.87
471 472 0.837272 TTAATGGCGGGCTAGCTTCT 59.163 50.000 15.72 0.00 37.29 2.85
472 473 1.230324 CTTAATGGCGGGCTAGCTTC 58.770 55.000 15.72 6.61 37.29 3.86
473 474 0.179018 CCTTAATGGCGGGCTAGCTT 60.179 55.000 15.72 2.05 37.29 3.74
474 475 1.054406 TCCTTAATGGCGGGCTAGCT 61.054 55.000 15.72 0.00 37.29 3.32
475 476 0.179029 TTCCTTAATGGCGGGCTAGC 60.179 55.000 6.04 6.04 35.26 3.42
476 477 2.222027 CTTTCCTTAATGGCGGGCTAG 58.778 52.381 2.38 0.00 35.26 3.42
477 478 1.749286 GCTTTCCTTAATGGCGGGCTA 60.749 52.381 2.38 0.00 35.26 3.93
478 479 1.037579 GCTTTCCTTAATGGCGGGCT 61.038 55.000 2.38 0.00 35.26 5.19
479 480 1.319614 TGCTTTCCTTAATGGCGGGC 61.320 55.000 0.00 0.00 35.26 6.13
480 481 0.740737 CTGCTTTCCTTAATGGCGGG 59.259 55.000 0.00 0.00 35.26 6.13
481 482 1.463674 ACTGCTTTCCTTAATGGCGG 58.536 50.000 0.00 0.00 35.26 6.13
482 483 3.627577 ACATACTGCTTTCCTTAATGGCG 59.372 43.478 0.00 0.00 35.26 5.69
483 484 5.125417 TGAACATACTGCTTTCCTTAATGGC 59.875 40.000 0.00 0.00 35.26 4.40
484 485 6.757897 TGAACATACTGCTTTCCTTAATGG 57.242 37.500 0.00 0.00 37.10 3.16
485 486 7.538678 GTGTTGAACATACTGCTTTCCTTAATG 59.461 37.037 0.00 0.00 0.00 1.90
486 487 7.448469 AGTGTTGAACATACTGCTTTCCTTAAT 59.552 33.333 0.00 0.00 0.00 1.40
487 488 6.770785 AGTGTTGAACATACTGCTTTCCTTAA 59.229 34.615 0.00 0.00 0.00 1.85
488 489 6.296026 AGTGTTGAACATACTGCTTTCCTTA 58.704 36.000 0.00 0.00 0.00 2.69
489 490 5.133221 AGTGTTGAACATACTGCTTTCCTT 58.867 37.500 0.00 0.00 0.00 3.36
490 491 4.718961 AGTGTTGAACATACTGCTTTCCT 58.281 39.130 0.00 0.00 0.00 3.36
491 492 5.438761 AAGTGTTGAACATACTGCTTTCC 57.561 39.130 0.00 0.00 0.00 3.13
492 493 7.378728 GGTTTAAGTGTTGAACATACTGCTTTC 59.621 37.037 0.00 0.00 31.42 2.62
493 494 7.147983 TGGTTTAAGTGTTGAACATACTGCTTT 60.148 33.333 0.00 0.00 31.42 3.51
494 495 6.320164 TGGTTTAAGTGTTGAACATACTGCTT 59.680 34.615 0.00 2.37 31.42 3.91
495 496 5.825679 TGGTTTAAGTGTTGAACATACTGCT 59.174 36.000 0.00 0.00 31.42 4.24
496 497 6.067263 TGGTTTAAGTGTTGAACATACTGC 57.933 37.500 0.00 0.00 31.42 4.40
497 498 6.142817 GCTGGTTTAAGTGTTGAACATACTG 58.857 40.000 0.00 0.00 31.42 2.74
498 499 5.825679 TGCTGGTTTAAGTGTTGAACATACT 59.174 36.000 0.00 0.00 31.42 2.12
499 500 6.067263 TGCTGGTTTAAGTGTTGAACATAC 57.933 37.500 0.00 0.00 31.42 2.39
500 501 6.488344 TCATGCTGGTTTAAGTGTTGAACATA 59.512 34.615 0.00 0.00 31.42 2.29
501 502 5.301551 TCATGCTGGTTTAAGTGTTGAACAT 59.698 36.000 0.00 0.00 31.42 2.71
502 503 4.642437 TCATGCTGGTTTAAGTGTTGAACA 59.358 37.500 0.00 0.00 31.42 3.18
503 504 5.008613 TCTCATGCTGGTTTAAGTGTTGAAC 59.991 40.000 0.00 0.00 0.00 3.18
504 505 5.129634 TCTCATGCTGGTTTAAGTGTTGAA 58.870 37.500 0.00 0.00 0.00 2.69
505 506 4.713553 TCTCATGCTGGTTTAAGTGTTGA 58.286 39.130 0.00 0.00 0.00 3.18
506 507 5.181811 TCATCTCATGCTGGTTTAAGTGTTG 59.818 40.000 0.00 0.00 0.00 3.33
507 508 5.316167 TCATCTCATGCTGGTTTAAGTGTT 58.684 37.500 0.00 0.00 0.00 3.32
508 509 4.910195 TCATCTCATGCTGGTTTAAGTGT 58.090 39.130 0.00 0.00 0.00 3.55
509 510 5.675575 GCTTCATCTCATGCTGGTTTAAGTG 60.676 44.000 0.00 0.00 0.00 3.16
510 511 4.397417 GCTTCATCTCATGCTGGTTTAAGT 59.603 41.667 0.00 0.00 0.00 2.24
511 512 4.397103 TGCTTCATCTCATGCTGGTTTAAG 59.603 41.667 0.00 0.00 0.00 1.85
512 513 4.334552 TGCTTCATCTCATGCTGGTTTAA 58.665 39.130 0.00 0.00 0.00 1.52
513 514 3.954200 TGCTTCATCTCATGCTGGTTTA 58.046 40.909 0.00 0.00 0.00 2.01
514 515 2.799017 TGCTTCATCTCATGCTGGTTT 58.201 42.857 0.00 0.00 0.00 3.27
515 516 2.502142 TGCTTCATCTCATGCTGGTT 57.498 45.000 0.00 0.00 0.00 3.67
516 517 2.366533 CTTGCTTCATCTCATGCTGGT 58.633 47.619 0.00 0.00 0.00 4.00
517 518 1.676529 CCTTGCTTCATCTCATGCTGG 59.323 52.381 0.00 0.00 0.00 4.85
518 519 2.366533 ACCTTGCTTCATCTCATGCTG 58.633 47.619 0.00 0.00 0.00 4.41
519 520 2.803030 ACCTTGCTTCATCTCATGCT 57.197 45.000 0.00 0.00 0.00 3.79
520 521 6.429078 TCATAATACCTTGCTTCATCTCATGC 59.571 38.462 0.00 0.00 0.00 4.06
521 522 7.119407 CCTCATAATACCTTGCTTCATCTCATG 59.881 40.741 0.00 0.00 0.00 3.07
522 523 7.166851 CCTCATAATACCTTGCTTCATCTCAT 58.833 38.462 0.00 0.00 0.00 2.90
523 524 6.528321 CCTCATAATACCTTGCTTCATCTCA 58.472 40.000 0.00 0.00 0.00 3.27
524 525 5.411053 GCCTCATAATACCTTGCTTCATCTC 59.589 44.000 0.00 0.00 0.00 2.75
525 526 5.163163 TGCCTCATAATACCTTGCTTCATCT 60.163 40.000 0.00 0.00 0.00 2.90
526 527 5.065914 TGCCTCATAATACCTTGCTTCATC 58.934 41.667 0.00 0.00 0.00 2.92
527 528 5.052693 TGCCTCATAATACCTTGCTTCAT 57.947 39.130 0.00 0.00 0.00 2.57
528 529 4.502105 TGCCTCATAATACCTTGCTTCA 57.498 40.909 0.00 0.00 0.00 3.02
529 530 5.835113 TTTGCCTCATAATACCTTGCTTC 57.165 39.130 0.00 0.00 0.00 3.86
530 531 6.796785 ATTTTGCCTCATAATACCTTGCTT 57.203 33.333 0.00 0.00 0.00 3.91
531 532 6.833416 TGTATTTTGCCTCATAATACCTTGCT 59.167 34.615 13.55 0.00 37.42 3.91
532 533 7.038154 TGTATTTTGCCTCATAATACCTTGC 57.962 36.000 13.55 0.00 37.42 4.01
533 534 8.225603 ACTGTATTTTGCCTCATAATACCTTG 57.774 34.615 13.55 8.85 37.42 3.61
534 535 9.561069 CTACTGTATTTTGCCTCATAATACCTT 57.439 33.333 13.55 6.70 37.42 3.50
535 536 8.714906 ACTACTGTATTTTGCCTCATAATACCT 58.285 33.333 13.55 5.74 37.42 3.08
536 537 8.904099 ACTACTGTATTTTGCCTCATAATACC 57.096 34.615 13.55 2.63 37.42 2.73
619 620 5.396101 GGGAGGTATGTACTTTGTAGGGTTC 60.396 48.000 0.00 0.00 0.00 3.62
640 641 3.053693 ACACTAATTATTGCTGCCTGGGA 60.054 43.478 2.90 0.00 0.00 4.37
656 657 3.719924 CCGTTACACTGTTCCACACTAA 58.280 45.455 0.00 0.00 0.00 2.24
657 658 2.546373 GCCGTTACACTGTTCCACACTA 60.546 50.000 0.00 0.00 0.00 2.74
681 682 5.410355 TGCTACCTTTAGTTAACCATCGT 57.590 39.130 0.88 0.00 0.00 3.73
710 711 5.289675 GTCGTTTGGATGAGTCTGTTATCTG 59.710 44.000 0.00 0.00 0.00 2.90
715 716 2.104111 TGGTCGTTTGGATGAGTCTGTT 59.896 45.455 0.00 0.00 0.00 3.16
722 723 2.549992 CCTTGAGTGGTCGTTTGGATGA 60.550 50.000 0.00 0.00 0.00 2.92
741 742 1.375610 GGGGGTAGGGTTTGTTACCT 58.624 55.000 0.00 0.00 46.86 3.08
742 743 1.074766 TGGGGGTAGGGTTTGTTACC 58.925 55.000 0.00 0.00 46.99 2.85
743 744 2.357465 GGATGGGGGTAGGGTTTGTTAC 60.357 54.545 0.00 0.00 0.00 2.50
744 745 1.924552 GGATGGGGGTAGGGTTTGTTA 59.075 52.381 0.00 0.00 0.00 2.41
745 746 0.708209 GGATGGGGGTAGGGTTTGTT 59.292 55.000 0.00 0.00 0.00 2.83
746 747 1.219131 GGGATGGGGGTAGGGTTTGT 61.219 60.000 0.00 0.00 0.00 2.83
747 748 0.924226 AGGGATGGGGGTAGGGTTTG 60.924 60.000 0.00 0.00 0.00 2.93
748 749 0.924226 CAGGGATGGGGGTAGGGTTT 60.924 60.000 0.00 0.00 0.00 3.27
749 750 1.308746 CAGGGATGGGGGTAGGGTT 60.309 63.158 0.00 0.00 0.00 4.11
750 751 2.376842 CAGGGATGGGGGTAGGGT 59.623 66.667 0.00 0.00 0.00 4.34
751 752 3.178611 GCAGGGATGGGGGTAGGG 61.179 72.222 0.00 0.00 0.00 3.53
752 753 3.178611 GGCAGGGATGGGGGTAGG 61.179 72.222 0.00 0.00 0.00 3.18
753 754 3.178611 GGGCAGGGATGGGGGTAG 61.179 72.222 0.00 0.00 0.00 3.18
754 755 4.855230 GGGGCAGGGATGGGGGTA 62.855 72.222 0.00 0.00 0.00 3.69
1072 1334 2.881734 TGAGAAGAAGAGGAGAGTGCA 58.118 47.619 0.00 0.00 0.00 4.57
1546 2175 3.523972 GGAAAGAACCCTATCTTCACCCT 59.476 47.826 0.00 0.00 38.69 4.34
1935 2564 2.481441 TGGACATGCCCTCATCTACTT 58.519 47.619 0.00 0.00 34.97 2.24
2262 2899 3.208594 GTGTTCGAGGGTTTGTTACCTT 58.791 45.455 0.00 0.00 46.86 3.50
2263 2900 2.486013 GGTGTTCGAGGGTTTGTTACCT 60.486 50.000 0.00 0.00 46.86 3.08
2264 2901 1.875514 GGTGTTCGAGGGTTTGTTACC 59.124 52.381 0.00 0.00 46.99 2.85
2265 2902 1.875514 GGGTGTTCGAGGGTTTGTTAC 59.124 52.381 0.00 0.00 0.00 2.50
2266 2903 1.770061 AGGGTGTTCGAGGGTTTGTTA 59.230 47.619 0.00 0.00 0.00 2.41
2267 2904 0.549469 AGGGTGTTCGAGGGTTTGTT 59.451 50.000 0.00 0.00 0.00 2.83
2268 2905 0.179029 CAGGGTGTTCGAGGGTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
2269 2906 0.179029 ACAGGGTGTTCGAGGGTTTG 60.179 55.000 0.00 0.00 0.00 2.93
2270 2907 0.549469 AACAGGGTGTTCGAGGGTTT 59.451 50.000 0.00 0.00 35.27 3.27
2271 2908 0.179029 CAACAGGGTGTTCGAGGGTT 60.179 55.000 0.00 0.00 38.77 4.11
2272 2909 1.342672 ACAACAGGGTGTTCGAGGGT 61.343 55.000 0.00 0.00 38.77 4.34
2273 2910 0.179029 AACAACAGGGTGTTCGAGGG 60.179 55.000 0.00 0.00 38.77 4.30
2274 2911 2.140717 GTAACAACAGGGTGTTCGAGG 58.859 52.381 5.89 0.00 38.77 4.63
2275 2912 1.790623 CGTAACAACAGGGTGTTCGAG 59.209 52.381 5.89 0.00 38.77 4.04
2276 2913 1.136695 ACGTAACAACAGGGTGTTCGA 59.863 47.619 20.52 0.16 38.77 3.71
2277 2914 1.574134 ACGTAACAACAGGGTGTTCG 58.426 50.000 5.89 12.00 38.77 3.95
2278 2915 3.200483 AGAACGTAACAACAGGGTGTTC 58.800 45.455 5.89 0.00 38.77 3.18
2279 2916 3.271055 AGAACGTAACAACAGGGTGTT 57.729 42.857 7.93 7.93 42.08 3.32
2280 2917 2.994186 AGAACGTAACAACAGGGTGT 57.006 45.000 0.00 0.00 0.00 4.16
2281 2918 3.875134 AGAAAGAACGTAACAACAGGGTG 59.125 43.478 0.00 0.00 0.00 4.61
2282 2919 3.875134 CAGAAAGAACGTAACAACAGGGT 59.125 43.478 0.00 0.00 0.00 4.34
2283 2920 4.124238 TCAGAAAGAACGTAACAACAGGG 58.876 43.478 0.00 0.00 0.00 4.45
2284 2921 5.728351 TTCAGAAAGAACGTAACAACAGG 57.272 39.130 0.00 0.00 0.00 4.00
2285 2922 6.943981 TCATTCAGAAAGAACGTAACAACAG 58.056 36.000 0.00 0.00 39.49 3.16
2286 2923 6.912203 TCATTCAGAAAGAACGTAACAACA 57.088 33.333 0.00 0.00 39.49 3.33
2287 2924 7.407337 ACTTCATTCAGAAAGAACGTAACAAC 58.593 34.615 0.00 0.00 39.49 3.32
2288 2925 7.548196 ACTTCATTCAGAAAGAACGTAACAA 57.452 32.000 0.00 0.00 39.49 2.83
2289 2926 8.827177 ATACTTCATTCAGAAAGAACGTAACA 57.173 30.769 11.25 0.00 39.49 2.41
2293 2930 9.141400 GTCTTATACTTCATTCAGAAAGAACGT 57.859 33.333 0.00 3.49 39.49 3.99
2294 2931 8.596380 GGTCTTATACTTCATTCAGAAAGAACG 58.404 37.037 0.00 0.00 39.49 3.95
2295 2932 9.436957 TGGTCTTATACTTCATTCAGAAAGAAC 57.563 33.333 0.00 0.00 39.49 3.01
2297 2934 9.658799 CTTGGTCTTATACTTCATTCAGAAAGA 57.341 33.333 0.00 0.00 35.40 2.52
2298 2935 9.658799 TCTTGGTCTTATACTTCATTCAGAAAG 57.341 33.333 0.00 0.00 35.40 2.62
2316 2953 9.520515 AGTTAATCATTGTTGTTATCTTGGTCT 57.479 29.630 0.00 0.00 0.00 3.85
2326 2963 9.125026 AGACAAGAGAAGTTAATCATTGTTGTT 57.875 29.630 0.00 0.00 33.99 2.83
2327 2964 8.562892 CAGACAAGAGAAGTTAATCATTGTTGT 58.437 33.333 0.00 0.00 33.99 3.32
2328 2965 8.777413 TCAGACAAGAGAAGTTAATCATTGTTG 58.223 33.333 0.00 0.00 33.99 3.33
2329 2966 8.908786 TCAGACAAGAGAAGTTAATCATTGTT 57.091 30.769 0.00 0.00 33.99 2.83
2330 2967 8.908786 TTCAGACAAGAGAAGTTAATCATTGT 57.091 30.769 0.00 0.00 35.50 2.71
2331 2968 9.985318 GATTCAGACAAGAGAAGTTAATCATTG 57.015 33.333 0.00 0.00 0.00 2.82
2332 2969 9.956640 AGATTCAGACAAGAGAAGTTAATCATT 57.043 29.630 0.00 0.00 0.00 2.57
2333 2970 9.598517 GAGATTCAGACAAGAGAAGTTAATCAT 57.401 33.333 0.00 0.00 0.00 2.45
2334 2971 8.588472 TGAGATTCAGACAAGAGAAGTTAATCA 58.412 33.333 0.00 0.00 0.00 2.57
2335 2972 8.994429 TGAGATTCAGACAAGAGAAGTTAATC 57.006 34.615 0.00 0.00 0.00 1.75
2345 2982 9.671279 TGCTTTTATTATGAGATTCAGACAAGA 57.329 29.630 0.00 0.00 0.00 3.02
2366 3003 8.653338 CGATTGATCAAAAATTCAGAATGCTTT 58.347 29.630 13.09 0.00 34.76 3.51
2367 3004 8.030692 TCGATTGATCAAAAATTCAGAATGCTT 58.969 29.630 13.09 0.00 34.76 3.91
2368 3005 7.541162 TCGATTGATCAAAAATTCAGAATGCT 58.459 30.769 13.09 0.00 34.76 3.79
2369 3006 7.745022 TCGATTGATCAAAAATTCAGAATGC 57.255 32.000 13.09 0.00 34.76 3.56
2370 3007 9.297586 ACATCGATTGATCAAAAATTCAGAATG 57.702 29.630 13.09 10.87 30.49 2.67
2371 3008 9.512435 GACATCGATTGATCAAAAATTCAGAAT 57.488 29.630 13.09 0.00 30.49 2.40
2372 3009 7.970061 GGACATCGATTGATCAAAAATTCAGAA 59.030 33.333 13.09 0.00 30.49 3.02
2373 3010 7.337689 AGGACATCGATTGATCAAAAATTCAGA 59.662 33.333 13.09 7.76 30.49 3.27
2374 3011 7.478322 AGGACATCGATTGATCAAAAATTCAG 58.522 34.615 13.09 2.56 30.49 3.02
2375 3012 7.395190 AGGACATCGATTGATCAAAAATTCA 57.605 32.000 13.09 0.00 30.49 2.57
2376 3013 7.905031 GAGGACATCGATTGATCAAAAATTC 57.095 36.000 13.09 4.46 30.49 2.17
2392 3029 0.176680 ATGTGAGTGGCGAGGACATC 59.823 55.000 0.00 0.00 0.00 3.06
2393 3030 0.107993 CATGTGAGTGGCGAGGACAT 60.108 55.000 0.00 0.00 0.00 3.06
2394 3031 1.293179 CATGTGAGTGGCGAGGACA 59.707 57.895 0.00 0.00 0.00 4.02
2395 3032 1.016130 CACATGTGAGTGGCGAGGAC 61.016 60.000 21.64 0.00 35.88 3.85
2396 3033 1.293179 CACATGTGAGTGGCGAGGA 59.707 57.895 21.64 0.00 35.88 3.71
2397 3034 0.246360 TACACATGTGAGTGGCGAGG 59.754 55.000 31.94 1.66 43.72 4.63
2398 3035 2.299993 ATACACATGTGAGTGGCGAG 57.700 50.000 31.94 2.46 43.72 5.03
2399 3036 2.233676 AGAATACACATGTGAGTGGCGA 59.766 45.455 31.94 8.16 43.72 5.54
2400 3037 2.604914 GAGAATACACATGTGAGTGGCG 59.395 50.000 31.94 4.05 43.72 5.69
2401 3038 3.866651 AGAGAATACACATGTGAGTGGC 58.133 45.455 31.94 15.73 43.72 5.01
2402 3039 7.495901 AGATAAGAGAATACACATGTGAGTGG 58.504 38.462 31.94 5.65 43.72 4.00
2403 3040 8.412456 AGAGATAAGAGAATACACATGTGAGTG 58.588 37.037 31.94 6.14 44.93 3.51
2404 3041 8.412456 CAGAGATAAGAGAATACACATGTGAGT 58.588 37.037 31.94 16.36 0.00 3.41
2405 3042 7.866898 CCAGAGATAAGAGAATACACATGTGAG 59.133 40.741 31.94 7.29 0.00 3.51
2406 3043 7.343057 ACCAGAGATAAGAGAATACACATGTGA 59.657 37.037 31.94 15.72 0.00 3.58
2407 3044 7.495901 ACCAGAGATAAGAGAATACACATGTG 58.504 38.462 24.25 24.25 0.00 3.21
2408 3045 7.667575 ACCAGAGATAAGAGAATACACATGT 57.332 36.000 0.00 0.00 0.00 3.21
2409 3046 8.200120 TGAACCAGAGATAAGAGAATACACATG 58.800 37.037 0.00 0.00 0.00 3.21
2410 3047 8.200792 GTGAACCAGAGATAAGAGAATACACAT 58.799 37.037 0.00 0.00 0.00 3.21
2411 3048 7.178451 TGTGAACCAGAGATAAGAGAATACACA 59.822 37.037 0.00 0.00 0.00 3.72
2412 3049 7.548097 TGTGAACCAGAGATAAGAGAATACAC 58.452 38.462 0.00 0.00 0.00 2.90
2413 3050 7.718334 TGTGAACCAGAGATAAGAGAATACA 57.282 36.000 0.00 0.00 0.00 2.29
2417 3054 9.605275 CAATTATGTGAACCAGAGATAAGAGAA 57.395 33.333 0.00 0.00 0.00 2.87
2418 3055 8.981659 TCAATTATGTGAACCAGAGATAAGAGA 58.018 33.333 0.00 0.00 0.00 3.10
2419 3056 9.039870 GTCAATTATGTGAACCAGAGATAAGAG 57.960 37.037 0.00 0.00 0.00 2.85
2420 3057 8.539544 TGTCAATTATGTGAACCAGAGATAAGA 58.460 33.333 0.00 0.00 0.00 2.10
2421 3058 8.722480 TGTCAATTATGTGAACCAGAGATAAG 57.278 34.615 0.00 0.00 0.00 1.73
2422 3059 9.685276 ATTGTCAATTATGTGAACCAGAGATAA 57.315 29.630 0.00 0.00 0.00 1.75
2423 3060 9.330063 GATTGTCAATTATGTGAACCAGAGATA 57.670 33.333 0.00 0.00 0.00 1.98
2424 3061 8.051535 AGATTGTCAATTATGTGAACCAGAGAT 58.948 33.333 0.00 0.00 0.00 2.75
2425 3062 7.335171 CAGATTGTCAATTATGTGAACCAGAGA 59.665 37.037 0.00 0.00 0.00 3.10
2426 3063 7.335171 TCAGATTGTCAATTATGTGAACCAGAG 59.665 37.037 0.00 0.00 0.00 3.35
2427 3064 7.167535 TCAGATTGTCAATTATGTGAACCAGA 58.832 34.615 0.00 0.00 0.00 3.86
2428 3065 7.381766 TCAGATTGTCAATTATGTGAACCAG 57.618 36.000 0.00 0.00 0.00 4.00
2429 3066 7.067372 GGATCAGATTGTCAATTATGTGAACCA 59.933 37.037 15.28 0.00 37.13 3.67
2430 3067 7.067372 TGGATCAGATTGTCAATTATGTGAACC 59.933 37.037 14.25 14.25 37.44 3.62
2431 3068 7.988737 TGGATCAGATTGTCAATTATGTGAAC 58.011 34.615 0.00 1.01 29.34 3.18
2432 3069 8.626526 CATGGATCAGATTGTCAATTATGTGAA 58.373 33.333 0.00 0.00 29.34 3.18
2433 3070 7.255346 GCATGGATCAGATTGTCAATTATGTGA 60.255 37.037 0.00 2.11 0.00 3.58
2434 3071 6.861572 GCATGGATCAGATTGTCAATTATGTG 59.138 38.462 0.00 0.00 0.00 3.21
2435 3072 6.015688 GGCATGGATCAGATTGTCAATTATGT 60.016 38.462 0.00 0.00 0.00 2.29
2436 3073 6.208797 AGGCATGGATCAGATTGTCAATTATG 59.791 38.462 0.00 2.81 0.00 1.90
2437 3074 6.312529 AGGCATGGATCAGATTGTCAATTAT 58.687 36.000 0.00 0.00 0.00 1.28
2438 3075 5.698104 AGGCATGGATCAGATTGTCAATTA 58.302 37.500 0.00 0.00 0.00 1.40
2439 3076 4.543689 AGGCATGGATCAGATTGTCAATT 58.456 39.130 0.00 0.00 0.00 2.32
2440 3077 4.142790 GAGGCATGGATCAGATTGTCAAT 58.857 43.478 0.00 0.00 0.00 2.57
2441 3078 3.054213 TGAGGCATGGATCAGATTGTCAA 60.054 43.478 0.00 0.00 0.00 3.18
2442 3079 2.506644 TGAGGCATGGATCAGATTGTCA 59.493 45.455 0.00 0.00 0.00 3.58
2443 3080 2.877168 GTGAGGCATGGATCAGATTGTC 59.123 50.000 0.00 0.00 0.00 3.18
2444 3081 2.422519 GGTGAGGCATGGATCAGATTGT 60.423 50.000 0.00 0.00 0.00 2.71
2445 3082 2.228059 GGTGAGGCATGGATCAGATTG 58.772 52.381 0.00 0.00 0.00 2.67
2446 3083 1.144503 GGGTGAGGCATGGATCAGATT 59.855 52.381 0.00 0.00 0.00 2.40
2447 3084 0.769873 GGGTGAGGCATGGATCAGAT 59.230 55.000 0.00 0.00 0.00 2.90
2448 3085 1.348008 GGGGTGAGGCATGGATCAGA 61.348 60.000 0.00 0.00 0.00 3.27
2449 3086 1.150081 GGGGTGAGGCATGGATCAG 59.850 63.158 0.00 0.00 0.00 2.90
2450 3087 1.213619 TTGGGGTGAGGCATGGATCA 61.214 55.000 0.00 0.00 0.00 2.92
2451 3088 0.033208 TTTGGGGTGAGGCATGGATC 60.033 55.000 0.00 0.00 0.00 3.36
2452 3089 0.638292 ATTTGGGGTGAGGCATGGAT 59.362 50.000 0.00 0.00 0.00 3.41
2453 3090 1.303898 TATTTGGGGTGAGGCATGGA 58.696 50.000 0.00 0.00 0.00 3.41
2454 3091 2.386829 ATATTTGGGGTGAGGCATGG 57.613 50.000 0.00 0.00 0.00 3.66
2455 3092 3.451902 ACAAATATTTGGGGTGAGGCATG 59.548 43.478 27.43 3.66 42.34 4.06
2456 3093 3.723325 ACAAATATTTGGGGTGAGGCAT 58.277 40.909 27.43 4.32 42.34 4.40
2457 3094 3.182887 ACAAATATTTGGGGTGAGGCA 57.817 42.857 27.43 0.00 42.34 4.75
2458 3095 6.719370 TGATATACAAATATTTGGGGTGAGGC 59.281 38.462 27.43 12.16 42.34 4.70
2459 3096 8.884124 ATGATATACAAATATTTGGGGTGAGG 57.116 34.615 27.43 4.99 42.34 3.86
2460 3097 9.745018 AGATGATATACAAATATTTGGGGTGAG 57.255 33.333 27.43 5.66 42.34 3.51
2481 3118 9.462606 TGTGTAGAGATTCAAGTAGTAAGATGA 57.537 33.333 0.00 0.00 0.00 2.92
2491 3128 9.337396 TGTTTGTTTATGTGTAGAGATTCAAGT 57.663 29.630 0.00 0.00 0.00 3.16
2492 3129 9.599322 GTGTTTGTTTATGTGTAGAGATTCAAG 57.401 33.333 0.00 0.00 0.00 3.02
2493 3130 9.114952 TGTGTTTGTTTATGTGTAGAGATTCAA 57.885 29.630 0.00 0.00 0.00 2.69
2494 3131 8.556194 GTGTGTTTGTTTATGTGTAGAGATTCA 58.444 33.333 0.00 0.00 0.00 2.57
2495 3132 8.556194 TGTGTGTTTGTTTATGTGTAGAGATTC 58.444 33.333 0.00 0.00 0.00 2.52
2496 3133 8.445275 TGTGTGTTTGTTTATGTGTAGAGATT 57.555 30.769 0.00 0.00 0.00 2.40
2497 3134 8.621532 ATGTGTGTTTGTTTATGTGTAGAGAT 57.378 30.769 0.00 0.00 0.00 2.75
2498 3135 8.445275 AATGTGTGTTTGTTTATGTGTAGAGA 57.555 30.769 0.00 0.00 0.00 3.10
2499 3136 8.341903 TGAATGTGTGTTTGTTTATGTGTAGAG 58.658 33.333 0.00 0.00 0.00 2.43
2500 3137 8.214721 TGAATGTGTGTTTGTTTATGTGTAGA 57.785 30.769 0.00 0.00 0.00 2.59
2501 3138 7.591057 CCTGAATGTGTGTTTGTTTATGTGTAG 59.409 37.037 0.00 0.00 0.00 2.74
2502 3139 7.421599 CCTGAATGTGTGTTTGTTTATGTGTA 58.578 34.615 0.00 0.00 0.00 2.90
2503 3140 6.272318 CCTGAATGTGTGTTTGTTTATGTGT 58.728 36.000 0.00 0.00 0.00 3.72
2504 3141 5.175491 GCCTGAATGTGTGTTTGTTTATGTG 59.825 40.000 0.00 0.00 0.00 3.21
2505 3142 5.163468 TGCCTGAATGTGTGTTTGTTTATGT 60.163 36.000 0.00 0.00 0.00 2.29
2506 3143 5.288015 TGCCTGAATGTGTGTTTGTTTATG 58.712 37.500 0.00 0.00 0.00 1.90
2507 3144 5.528043 TGCCTGAATGTGTGTTTGTTTAT 57.472 34.783 0.00 0.00 0.00 1.40
2508 3145 4.991153 TGCCTGAATGTGTGTTTGTTTA 57.009 36.364 0.00 0.00 0.00 2.01
2509 3146 3.883830 TGCCTGAATGTGTGTTTGTTT 57.116 38.095 0.00 0.00 0.00 2.83
2510 3147 4.121317 CAATGCCTGAATGTGTGTTTGTT 58.879 39.130 0.00 0.00 0.00 2.83
2511 3148 3.384146 TCAATGCCTGAATGTGTGTTTGT 59.616 39.130 0.00 0.00 0.00 2.83
2512 3149 3.979948 TCAATGCCTGAATGTGTGTTTG 58.020 40.909 0.00 0.00 0.00 2.93
2513 3150 4.669206 TTCAATGCCTGAATGTGTGTTT 57.331 36.364 0.00 0.00 39.20 2.83
2514 3151 4.669206 TTTCAATGCCTGAATGTGTGTT 57.331 36.364 0.00 0.00 43.64 3.32
2515 3152 4.669206 TTTTCAATGCCTGAATGTGTGT 57.331 36.364 0.00 0.00 43.64 3.72
2534 3171 8.286097 CGCTTCTTTATTTGACTCTCTCTTTTT 58.714 33.333 0.00 0.00 0.00 1.94
2535 3172 7.657761 TCGCTTCTTTATTTGACTCTCTCTTTT 59.342 33.333 0.00 0.00 0.00 2.27
2536 3173 7.155328 TCGCTTCTTTATTTGACTCTCTCTTT 58.845 34.615 0.00 0.00 0.00 2.52
2537 3174 6.692486 TCGCTTCTTTATTTGACTCTCTCTT 58.308 36.000 0.00 0.00 0.00 2.85
2538 3175 6.274157 TCGCTTCTTTATTTGACTCTCTCT 57.726 37.500 0.00 0.00 0.00 3.10
2539 3176 5.518487 CCTCGCTTCTTTATTTGACTCTCTC 59.482 44.000 0.00 0.00 0.00 3.20
2540 3177 5.186021 TCCTCGCTTCTTTATTTGACTCTCT 59.814 40.000 0.00 0.00 0.00 3.10
2541 3178 5.411781 TCCTCGCTTCTTTATTTGACTCTC 58.588 41.667 0.00 0.00 0.00 3.20
2542 3179 5.407407 TCCTCGCTTCTTTATTTGACTCT 57.593 39.130 0.00 0.00 0.00 3.24
2543 3180 5.869888 TCTTCCTCGCTTCTTTATTTGACTC 59.130 40.000 0.00 0.00 0.00 3.36
2544 3181 5.794894 TCTTCCTCGCTTCTTTATTTGACT 58.205 37.500 0.00 0.00 0.00 3.41
2545 3182 5.446607 GCTCTTCCTCGCTTCTTTATTTGAC 60.447 44.000 0.00 0.00 0.00 3.18
2546 3183 4.631813 GCTCTTCCTCGCTTCTTTATTTGA 59.368 41.667 0.00 0.00 0.00 2.69
2547 3184 4.201861 GGCTCTTCCTCGCTTCTTTATTTG 60.202 45.833 0.00 0.00 0.00 2.32
2548 3185 3.942115 GGCTCTTCCTCGCTTCTTTATTT 59.058 43.478 0.00 0.00 0.00 1.40
2549 3186 3.198853 AGGCTCTTCCTCGCTTCTTTATT 59.801 43.478 0.00 0.00 43.20 1.40
2550 3187 2.769095 AGGCTCTTCCTCGCTTCTTTAT 59.231 45.455 0.00 0.00 43.20 1.40
2551 3188 2.093973 CAGGCTCTTCCTCGCTTCTTTA 60.094 50.000 0.00 0.00 45.52 1.85
2552 3189 0.980423 AGGCTCTTCCTCGCTTCTTT 59.020 50.000 0.00 0.00 43.20 2.52
2553 3190 0.248843 CAGGCTCTTCCTCGCTTCTT 59.751 55.000 0.00 0.00 45.52 2.52
2554 3191 1.612395 CCAGGCTCTTCCTCGCTTCT 61.612 60.000 0.00 0.00 45.52 2.85
2555 3192 1.153469 CCAGGCTCTTCCTCGCTTC 60.153 63.158 0.00 0.00 45.52 3.86
2556 3193 1.610673 TCCAGGCTCTTCCTCGCTT 60.611 57.895 0.00 0.00 45.52 4.68
2557 3194 2.038007 TCCAGGCTCTTCCTCGCT 59.962 61.111 0.00 0.00 45.52 4.93
2558 3195 2.185608 GTCCAGGCTCTTCCTCGC 59.814 66.667 0.00 0.00 45.52 5.03
2559 3196 0.967887 TCAGTCCAGGCTCTTCCTCG 60.968 60.000 0.00 0.00 45.52 4.63
2560 3197 1.206849 CTTCAGTCCAGGCTCTTCCTC 59.793 57.143 0.00 0.00 45.52 3.71
2562 3199 0.251634 CCTTCAGTCCAGGCTCTTCC 59.748 60.000 0.00 0.00 0.00 3.46
2563 3200 0.980423 ACCTTCAGTCCAGGCTCTTC 59.020 55.000 0.00 0.00 34.32 2.87
2564 3201 0.689623 CACCTTCAGTCCAGGCTCTT 59.310 55.000 0.00 0.00 34.32 2.85
2565 3202 0.472734 ACACCTTCAGTCCAGGCTCT 60.473 55.000 0.00 0.00 34.32 4.09
2566 3203 0.398318 AACACCTTCAGTCCAGGCTC 59.602 55.000 0.00 0.00 34.32 4.70
2567 3204 0.398318 GAACACCTTCAGTCCAGGCT 59.602 55.000 0.00 0.00 34.32 4.58
2568 3205 0.606673 GGAACACCTTCAGTCCAGGC 60.607 60.000 0.00 0.00 34.32 4.85
2569 3206 1.002544 GAGGAACACCTTCAGTCCAGG 59.997 57.143 0.00 0.00 37.45 4.45
2570 3207 1.002544 GGAGGAACACCTTCAGTCCAG 59.997 57.143 0.00 0.00 35.74 3.86
2571 3208 1.056660 GGAGGAACACCTTCAGTCCA 58.943 55.000 0.00 0.00 35.74 4.02
2572 3209 3.938109 GGAGGAACACCTTCAGTCC 57.062 57.895 0.00 0.00 35.74 3.85
2580 3217 0.914417 TGGGGATCAGGAGGAACACC 60.914 60.000 0.00 0.00 42.07 4.16
2581 3218 0.991920 TTGGGGATCAGGAGGAACAC 59.008 55.000 0.00 0.00 0.00 3.32
2582 3219 0.991920 GTTGGGGATCAGGAGGAACA 59.008 55.000 0.00 0.00 0.00 3.18
2583 3220 0.991920 TGTTGGGGATCAGGAGGAAC 59.008 55.000 0.00 0.00 0.00 3.62
2584 3221 1.289160 CTGTTGGGGATCAGGAGGAA 58.711 55.000 0.00 0.00 0.00 3.36
2585 3222 0.119155 ACTGTTGGGGATCAGGAGGA 59.881 55.000 0.00 0.00 36.17 3.71
2586 3223 0.254178 CACTGTTGGGGATCAGGAGG 59.746 60.000 0.00 0.00 36.17 4.30
2587 3224 0.393537 GCACTGTTGGGGATCAGGAG 60.394 60.000 0.00 0.00 36.17 3.69
2588 3225 1.685224 GCACTGTTGGGGATCAGGA 59.315 57.895 0.00 0.00 36.17 3.86
2589 3226 1.746615 CGCACTGTTGGGGATCAGG 60.747 63.158 0.00 0.00 36.17 3.86
2590 3227 2.401766 GCGCACTGTTGGGGATCAG 61.402 63.158 0.30 0.00 36.19 2.90
2591 3228 2.359850 GCGCACTGTTGGGGATCA 60.360 61.111 0.30 0.00 36.19 2.92
2592 3229 3.134127 GGCGCACTGTTGGGGATC 61.134 66.667 10.83 0.00 36.19 3.36
2593 3230 3.628646 GAGGCGCACTGTTGGGGAT 62.629 63.158 10.83 0.00 36.19 3.85
2594 3231 4.329545 GAGGCGCACTGTTGGGGA 62.330 66.667 10.83 0.00 36.19 4.81
2596 3233 2.463589 TTAGGAGGCGCACTGTTGGG 62.464 60.000 10.83 0.00 38.71 4.12
2597 3234 1.003839 TTAGGAGGCGCACTGTTGG 60.004 57.895 10.83 0.00 0.00 3.77
2598 3235 1.021390 CCTTAGGAGGCGCACTGTTG 61.021 60.000 10.83 0.00 35.94 3.33
2599 3236 1.296715 CCTTAGGAGGCGCACTGTT 59.703 57.895 10.83 0.00 35.94 3.16
2600 3237 2.982130 CCTTAGGAGGCGCACTGT 59.018 61.111 10.83 0.00 35.94 3.55
2608 3245 2.579873 CATTGACCATGCCTTAGGAGG 58.420 52.381 0.69 2.63 46.50 4.30
2609 3246 2.173356 TCCATTGACCATGCCTTAGGAG 59.827 50.000 0.69 0.00 0.00 3.69
2610 3247 2.173356 CTCCATTGACCATGCCTTAGGA 59.827 50.000 0.69 0.00 0.00 2.94
2611 3248 2.579873 CTCCATTGACCATGCCTTAGG 58.420 52.381 0.00 0.00 0.00 2.69
2612 3249 1.952296 GCTCCATTGACCATGCCTTAG 59.048 52.381 0.00 0.00 0.00 2.18
2613 3250 1.410083 GGCTCCATTGACCATGCCTTA 60.410 52.381 0.00 0.00 37.58 2.69
2614 3251 0.685458 GGCTCCATTGACCATGCCTT 60.685 55.000 0.00 0.00 37.58 4.35
2615 3252 1.076485 GGCTCCATTGACCATGCCT 60.076 57.895 0.00 0.00 37.58 4.75
2616 3253 2.484062 CGGCTCCATTGACCATGCC 61.484 63.158 0.00 0.00 37.24 4.40
2617 3254 2.484062 CCGGCTCCATTGACCATGC 61.484 63.158 0.00 0.00 0.00 4.06
2618 3255 1.097547 GTCCGGCTCCATTGACCATG 61.098 60.000 0.00 0.00 0.00 3.66
2619 3256 1.224592 GTCCGGCTCCATTGACCAT 59.775 57.895 0.00 0.00 0.00 3.55
2620 3257 2.184020 CTGTCCGGCTCCATTGACCA 62.184 60.000 0.00 0.00 0.00 4.02
2621 3258 1.450312 CTGTCCGGCTCCATTGACC 60.450 63.158 0.00 0.00 0.00 4.02
2622 3259 2.109126 GCTGTCCGGCTCCATTGAC 61.109 63.158 0.00 0.00 0.00 3.18
2623 3260 2.268920 GCTGTCCGGCTCCATTGA 59.731 61.111 0.00 0.00 0.00 2.57
2624 3261 3.197790 CGCTGTCCGGCTCCATTG 61.198 66.667 0.00 0.00 0.00 2.82
2640 3277 4.820744 CACCATGGGGGAAGGGCG 62.821 72.222 18.09 0.00 41.15 6.13
2641 3278 3.238197 AACACCATGGGGGAAGGGC 62.238 63.158 20.68 0.00 41.15 5.19
2642 3279 1.000359 GAACACCATGGGGGAAGGG 60.000 63.158 20.68 0.00 41.15 3.95
2643 3280 1.000359 GGAACACCATGGGGGAAGG 60.000 63.158 20.68 1.62 41.15 3.46
2644 3281 1.000359 GGGAACACCATGGGGGAAG 60.000 63.158 20.68 3.91 41.15 3.46
2645 3282 2.913117 CGGGAACACCATGGGGGAA 61.913 63.158 20.68 0.00 41.15 3.97
2646 3283 3.334891 CGGGAACACCATGGGGGA 61.335 66.667 20.68 0.00 41.15 4.81
2647 3284 3.334891 TCGGGAACACCATGGGGG 61.335 66.667 20.68 11.69 44.81 5.40
2648 3285 2.272146 CTCGGGAACACCATGGGG 59.728 66.667 14.08 14.08 40.22 4.96
2649 3286 2.438434 GCTCGGGAACACCATGGG 60.438 66.667 18.09 7.72 40.22 4.00
2650 3287 2.819595 CGCTCGGGAACACCATGG 60.820 66.667 11.19 11.19 40.22 3.66
2651 3288 2.819595 CCGCTCGGGAACACCATG 60.820 66.667 0.00 0.00 40.22 3.66
2652 3289 4.778143 GCCGCTCGGGAACACCAT 62.778 66.667 10.57 0.00 40.22 3.55
2663 3300 4.194720 AGATGTCGTCCGCCGCTC 62.195 66.667 0.00 0.00 36.19 5.03
2664 3301 4.498520 CAGATGTCGTCCGCCGCT 62.499 66.667 0.00 0.00 36.19 5.52
2667 3304 3.740128 ATGCCAGATGTCGTCCGCC 62.740 63.158 0.53 0.00 0.00 6.13
2668 3305 2.202932 ATGCCAGATGTCGTCCGC 60.203 61.111 0.00 0.00 0.00 5.54
2669 3306 1.884464 CCATGCCAGATGTCGTCCG 60.884 63.158 0.00 0.00 0.00 4.79
2670 3307 1.524621 CCCATGCCAGATGTCGTCC 60.525 63.158 0.00 0.00 0.00 4.79
2671 3308 1.091771 CACCCATGCCAGATGTCGTC 61.092 60.000 0.00 0.00 0.00 4.20
2672 3309 1.078214 CACCCATGCCAGATGTCGT 60.078 57.895 0.00 0.00 0.00 4.34
2673 3310 1.820906 CCACCCATGCCAGATGTCG 60.821 63.158 0.00 0.00 0.00 4.35
2674 3311 0.465097 CTCCACCCATGCCAGATGTC 60.465 60.000 0.00 0.00 0.00 3.06
2675 3312 0.915872 TCTCCACCCATGCCAGATGT 60.916 55.000 0.00 0.00 0.00 3.06
2676 3313 0.465097 GTCTCCACCCATGCCAGATG 60.465 60.000 0.00 0.00 0.00 2.90
2677 3314 1.639635 GGTCTCCACCCATGCCAGAT 61.640 60.000 0.00 0.00 36.54 2.90
2678 3315 2.300967 GGTCTCCACCCATGCCAGA 61.301 63.158 0.00 0.00 36.54 3.86
2679 3316 2.273449 GGTCTCCACCCATGCCAG 59.727 66.667 0.00 0.00 36.54 4.85
2687 3324 0.978667 GAGAGGAAGGGGTCTCCACC 60.979 65.000 0.00 0.00 42.90 4.61
2688 3325 2.597995 GAGAGGAAGGGGTCTCCAC 58.402 63.158 0.00 0.00 38.24 4.02
2691 3328 2.428085 GCGGAGAGGAAGGGGTCTC 61.428 68.421 0.00 0.00 38.84 3.36
2692 3329 2.364448 GCGGAGAGGAAGGGGTCT 60.364 66.667 0.00 0.00 0.00 3.85
2693 3330 3.471806 GGCGGAGAGGAAGGGGTC 61.472 72.222 0.00 0.00 0.00 4.46
2696 3333 3.009115 TTGGGCGGAGAGGAAGGG 61.009 66.667 0.00 0.00 0.00 3.95
2697 3334 2.586792 CTTGGGCGGAGAGGAAGG 59.413 66.667 0.00 0.00 0.00 3.46
2698 3335 1.990060 TCCTTGGGCGGAGAGGAAG 60.990 63.158 0.00 0.00 36.67 3.46
2699 3336 2.121832 TCCTTGGGCGGAGAGGAA 59.878 61.111 0.00 0.00 36.67 3.36
2700 3337 2.683933 GTCCTTGGGCGGAGAGGA 60.684 66.667 0.00 0.00 37.24 3.71
2701 3338 2.685380 AGTCCTTGGGCGGAGAGG 60.685 66.667 0.00 0.00 32.70 3.69
2702 3339 2.581354 CAGTCCTTGGGCGGAGAG 59.419 66.667 0.00 0.00 32.70 3.20
2703 3340 3.706373 GCAGTCCTTGGGCGGAGA 61.706 66.667 0.00 0.00 32.70 3.71
2704 3341 3.965539 CTGCAGTCCTTGGGCGGAG 62.966 68.421 5.25 0.00 35.98 4.63
2705 3342 4.020617 CTGCAGTCCTTGGGCGGA 62.021 66.667 5.25 0.00 35.98 5.54
2706 3343 3.850098 AACTGCAGTCCTTGGGCGG 62.850 63.158 21.95 0.00 39.77 6.13
2707 3344 2.281761 AACTGCAGTCCTTGGGCG 60.282 61.111 21.95 0.00 0.00 6.13
2708 3345 2.328099 CGAACTGCAGTCCTTGGGC 61.328 63.158 21.95 3.15 0.00 5.36
2709 3346 0.036010 ATCGAACTGCAGTCCTTGGG 60.036 55.000 21.95 6.15 0.00 4.12
2710 3347 2.672961 TATCGAACTGCAGTCCTTGG 57.327 50.000 21.95 6.24 0.00 3.61
2711 3348 3.589988 AGTTATCGAACTGCAGTCCTTG 58.410 45.455 21.95 9.74 44.50 3.61
2712 3349 3.963428 AGTTATCGAACTGCAGTCCTT 57.037 42.857 21.95 4.09 44.50 3.36
2722 3359 1.348594 GCAGCGCCAGTTATCGAAC 59.651 57.895 2.29 0.00 35.64 3.95
2723 3360 3.794270 GCAGCGCCAGTTATCGAA 58.206 55.556 2.29 0.00 0.00 3.71
2736 3373 3.941657 GACAGGACAGGTCGGCAGC 62.942 68.421 0.00 0.00 0.00 5.25
2737 3374 2.099652 TTGACAGGACAGGTCGGCAG 62.100 60.000 0.00 0.00 38.10 4.85
2738 3375 2.099652 CTTGACAGGACAGGTCGGCA 62.100 60.000 0.00 0.00 38.10 5.69
2739 3376 1.374758 CTTGACAGGACAGGTCGGC 60.375 63.158 0.00 0.00 38.10 5.54
2740 3377 2.351777 TCTTGACAGGACAGGTCGG 58.648 57.895 0.00 0.00 38.10 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.