Multiple sequence alignment - TraesCS1A01G385600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G385600 chr1A 100.000 3892 0 0 1 3892 554886814 554890705 0.000000e+00 7188.0
1 TraesCS1A01G385600 chr1A 93.443 61 4 0 158 218 449841675 449841615 1.490000e-14 91.6
2 TraesCS1A01G385600 chr1D 92.066 1462 65 23 753 2192 463017119 463018551 0.000000e+00 2010.0
3 TraesCS1A01G385600 chr1D 92.539 965 46 10 2230 3169 463018554 463019517 0.000000e+00 1360.0
4 TraesCS1A01G385600 chr1D 85.438 776 52 28 1 730 463016060 463016820 0.000000e+00 750.0
5 TraesCS1A01G385600 chr1B 90.755 941 58 21 2242 3159 638015058 638015992 0.000000e+00 1229.0
6 TraesCS1A01G385600 chr1B 88.938 904 62 23 300 1180 638013002 638013890 0.000000e+00 1081.0
7 TraesCS1A01G385600 chr1B 91.692 662 25 11 1579 2227 638014327 638014971 0.000000e+00 891.0
8 TraesCS1A01G385600 chr3D 93.605 172 11 0 3259 3430 4171288 4171117 1.390000e-64 257.0
9 TraesCS1A01G385600 chr3D 84.127 126 17 3 1058 1182 370618671 370618794 6.830000e-23 119.0
10 TraesCS1A01G385600 chr2D 96.178 157 6 0 3265 3421 103715470 103715626 1.390000e-64 257.0
11 TraesCS1A01G385600 chr2D 93.103 174 12 0 3266 3439 24312193 24312366 4.990000e-64 255.0
12 TraesCS1A01G385600 chr7D 93.605 172 10 1 3263 3433 192936017 192936188 4.990000e-64 255.0
13 TraesCS1A01G385600 chr7A 93.064 173 12 0 3266 3438 115807687 115807515 1.790000e-63 254.0
14 TraesCS1A01G385600 chr6D 93.103 174 10 2 3265 3438 82196659 82196830 1.790000e-63 254.0
15 TraesCS1A01G385600 chr6D 92.222 180 13 1 3259 3437 392897147 392896968 1.790000e-63 254.0
16 TraesCS1A01G385600 chr4B 90.306 196 15 3 3266 3458 578716969 578716775 1.790000e-63 254.0
17 TraesCS1A01G385600 chr4B 90.052 191 16 2 3263 3453 80990646 80990833 1.080000e-60 244.0
18 TraesCS1A01G385600 chr3B 83.333 126 18 3 1058 1182 482002230 482002353 3.180000e-21 113.0
19 TraesCS1A01G385600 chr3A 83.478 115 16 3 1069 1182 491521785 491521897 1.910000e-18 104.0
20 TraesCS1A01G385600 chr5D 91.176 68 6 0 165 232 467427530 467427597 4.140000e-15 93.5
21 TraesCS1A01G385600 chr4D 84.000 75 12 0 172 246 509678444 509678370 5.390000e-09 73.1
22 TraesCS1A01G385600 chr4A 100.000 30 0 0 193 222 595256300 595256271 5.430000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G385600 chr1A 554886814 554890705 3891 False 7188.000000 7188 100.000000 1 3892 1 chr1A.!!$F1 3891
1 TraesCS1A01G385600 chr1D 463016060 463019517 3457 False 1373.333333 2010 90.014333 1 3169 3 chr1D.!!$F1 3168
2 TraesCS1A01G385600 chr1B 638013002 638015992 2990 False 1067.000000 1229 90.461667 300 3159 3 chr1B.!!$F1 2859

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
82 83 0.110295 TATGCACGCATTAGGCCCAT 59.890 50.0 10.23 0.0 40.31 4.00 F
1274 1719 0.181350 ATGGCTAGCTTACCTGTGGC 59.819 55.0 15.72 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1474 1926 0.033503 TGGCACTCGAGGTATCAGGA 60.034 55.0 18.41 0.0 0.0 3.86 R
3192 3756 0.035820 ATTTTGCAATGCCCAGCCTG 60.036 50.0 1.53 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.717913 ACCCACCTTGTACAAACCTCTAA 59.282 43.478 10.03 0.00 0.00 2.10
37 38 6.766467 CCTTGTACAAACCTCTAACAAACTCT 59.234 38.462 10.03 0.00 30.30 3.24
38 39 7.041984 CCTTGTACAAACCTCTAACAAACTCTC 60.042 40.741 10.03 0.00 30.30 3.20
45 46 8.930760 CAAACCTCTAACAAACTCTCATTCTAG 58.069 37.037 0.00 0.00 0.00 2.43
82 83 0.110295 TATGCACGCATTAGGCCCAT 59.890 50.000 10.23 0.00 40.31 4.00
86 87 1.613437 GCACGCATTAGGCCCATAATT 59.387 47.619 0.00 0.00 40.31 1.40
87 88 2.351738 GCACGCATTAGGCCCATAATTC 60.352 50.000 0.00 0.00 40.31 2.17
88 89 3.149196 CACGCATTAGGCCCATAATTCT 58.851 45.455 0.00 0.00 40.31 2.40
91 92 3.057315 CGCATTAGGCCCATAATTCTTGG 60.057 47.826 0.00 1.18 40.31 3.61
116 117 7.012421 GGAGACAGTCTTGAATAAAAACAGTGT 59.988 37.037 4.05 0.00 0.00 3.55
117 118 8.958119 AGACAGTCTTGAATAAAAACAGTGTA 57.042 30.769 0.00 0.00 0.00 2.90
118 119 8.827677 AGACAGTCTTGAATAAAAACAGTGTAC 58.172 33.333 0.00 0.00 0.00 2.90
119 120 8.500753 ACAGTCTTGAATAAAAACAGTGTACA 57.499 30.769 0.00 0.00 0.00 2.90
120 121 8.395633 ACAGTCTTGAATAAAAACAGTGTACAC 58.604 33.333 18.56 18.56 0.00 2.90
121 122 8.612619 CAGTCTTGAATAAAAACAGTGTACACT 58.387 33.333 22.95 22.95 43.61 3.55
122 123 9.826574 AGTCTTGAATAAAAACAGTGTACACTA 57.173 29.630 27.48 12.10 40.20 2.74
138 139 6.877322 GTGTACACTAAACATACACCTTCCAT 59.123 38.462 18.92 0.00 0.00 3.41
179 180 6.456501 ACAGTCTTGCTAAGTTTTAGTCGAT 58.543 36.000 0.00 0.00 0.00 3.59
224 225 9.014533 CAATCGATACTATATCCGTGAGATTTG 57.985 37.037 0.00 0.00 36.33 2.32
287 288 9.822185 AAAATAGTTTTTGTTTCTCTCTTGCAT 57.178 25.926 0.00 0.00 33.79 3.96
290 291 6.633856 AGTTTTTGTTTCTCTCTTGCATGTT 58.366 32.000 0.00 0.00 0.00 2.71
291 292 7.771183 AGTTTTTGTTTCTCTCTTGCATGTTA 58.229 30.769 0.00 0.00 0.00 2.41
292 293 7.917505 AGTTTTTGTTTCTCTCTTGCATGTTAG 59.082 33.333 0.00 0.00 0.00 2.34
293 294 6.942532 TTTGTTTCTCTCTTGCATGTTAGT 57.057 33.333 0.00 0.00 0.00 2.24
294 295 6.545504 TTGTTTCTCTCTTGCATGTTAGTC 57.454 37.500 0.00 0.00 0.00 2.59
305 335 2.744202 GCATGTTAGTCAGTCCACCTTG 59.256 50.000 0.00 0.00 0.00 3.61
314 344 4.263572 TCCACCTTGCCACACCCG 62.264 66.667 0.00 0.00 0.00 5.28
315 345 4.579384 CCACCTTGCCACACCCGT 62.579 66.667 0.00 0.00 0.00 5.28
330 363 1.741145 ACCCGTTTCATGTTATTCGGC 59.259 47.619 0.00 0.00 37.17 5.54
341 374 5.815740 TCATGTTATTCGGCTAGGTTTCTTC 59.184 40.000 0.00 0.00 0.00 2.87
480 526 1.507141 AAAGGTCAAAGCCAGACGCG 61.507 55.000 3.53 3.53 44.76 6.01
538 584 2.887568 CACCGCTCTCGCATCACC 60.888 66.667 0.00 0.00 35.30 4.02
556 602 2.503375 GTGGTACGGCGACACGAG 60.503 66.667 16.62 0.00 37.61 4.18
557 603 4.409218 TGGTACGGCGACACGAGC 62.409 66.667 16.62 3.34 37.61 5.03
962 1320 3.952508 TGCGGCCACCACTGTCAT 61.953 61.111 2.24 0.00 0.00 3.06
979 1337 3.019003 ATTCTGCCACCGACGGAGG 62.019 63.158 24.38 24.38 36.51 4.30
999 1357 2.554032 GGAGAGAGCTAGTGAGATCAGC 59.446 54.545 0.00 0.00 40.78 4.26
1004 1362 2.364970 GAGCTAGTGAGATCAGCATGGT 59.635 50.000 4.95 0.00 38.05 3.55
1241 1673 5.394663 GCTGTAGAATGTAGGCTTCTTGAGA 60.395 44.000 0.00 0.00 34.81 3.27
1242 1674 5.967088 TGTAGAATGTAGGCTTCTTGAGAC 58.033 41.667 0.00 0.00 34.81 3.36
1246 1678 1.902508 TGTAGGCTTCTTGAGACCCTG 59.097 52.381 0.00 0.00 31.76 4.45
1274 1719 0.181350 ATGGCTAGCTTACCTGTGGC 59.819 55.000 15.72 0.00 0.00 5.01
1316 1768 3.375299 AGTTCATGCGAGGAAACAATAGC 59.625 43.478 0.00 0.00 0.00 2.97
1408 1860 2.573462 AGTTGGCATGGTAGTGTCAGAT 59.427 45.455 0.00 0.00 34.81 2.90
1456 1908 0.395724 GGGACCAAGCTGTAATGGGG 60.396 60.000 7.09 0.00 41.17 4.96
1470 1922 3.926058 AATGGGGTAATAAGCGTCTGT 57.074 42.857 0.00 0.00 0.00 3.41
1473 1925 2.167693 TGGGGTAATAAGCGTCTGTCTG 59.832 50.000 0.00 0.00 0.00 3.51
1474 1926 2.167900 GGGGTAATAAGCGTCTGTCTGT 59.832 50.000 0.00 0.00 0.00 3.41
1475 1927 3.445857 GGGTAATAAGCGTCTGTCTGTC 58.554 50.000 0.00 0.00 0.00 3.51
1476 1928 3.445857 GGTAATAAGCGTCTGTCTGTCC 58.554 50.000 0.00 0.00 0.00 4.02
1477 1929 3.130693 GGTAATAAGCGTCTGTCTGTCCT 59.869 47.826 0.00 0.00 0.00 3.85
1478 1930 2.949451 ATAAGCGTCTGTCTGTCCTG 57.051 50.000 0.00 0.00 0.00 3.86
1488 1940 2.616376 CTGTCTGTCCTGATACCTCGAG 59.384 54.545 5.13 5.13 0.00 4.04
1521 1973 5.722263 CACTTCTCACAACTCAGATGATCT 58.278 41.667 0.00 0.00 0.00 2.75
1522 1974 6.626844 GCACTTCTCACAACTCAGATGATCTA 60.627 42.308 0.00 0.00 0.00 1.98
1523 1975 6.974048 CACTTCTCACAACTCAGATGATCTAG 59.026 42.308 0.00 0.00 0.00 2.43
1524 1976 6.663093 ACTTCTCACAACTCAGATGATCTAGT 59.337 38.462 0.00 0.00 0.00 2.57
1525 1977 7.831690 ACTTCTCACAACTCAGATGATCTAGTA 59.168 37.037 0.00 0.00 0.00 1.82
1526 1978 7.800155 TCTCACAACTCAGATGATCTAGTAG 57.200 40.000 0.00 0.00 0.00 2.57
1559 2011 3.938963 CTCACCACCGCAATAGTAACAAT 59.061 43.478 0.00 0.00 0.00 2.71
1560 2012 3.936453 TCACCACCGCAATAGTAACAATC 59.064 43.478 0.00 0.00 0.00 2.67
1864 2316 0.453950 TCTACGTCGCGTTTCAGCTC 60.454 55.000 5.77 0.00 41.54 4.09
1867 2319 1.128611 CGTCGCGTTTCAGCTCAAG 59.871 57.895 5.77 0.00 34.40 3.02
1969 2421 1.002544 CAGGACAAGACCTCCTTCACC 59.997 57.143 0.00 0.00 35.83 4.02
1990 2442 3.493503 CCTTCGACTTCACAACTGGTAAC 59.506 47.826 0.00 0.00 0.00 2.50
1991 2443 4.369182 CTTCGACTTCACAACTGGTAACT 58.631 43.478 0.00 0.00 37.61 2.24
1992 2444 5.508489 CCTTCGACTTCACAACTGGTAACTA 60.508 44.000 0.00 0.00 37.61 2.24
1999 2451 7.088905 ACTTCACAACTGGTAACTAAGATACG 58.911 38.462 0.00 0.00 37.61 3.06
2008 2460 8.796475 ACTGGTAACTAAGATACGAACTGTTTA 58.204 33.333 0.00 0.00 37.61 2.01
2023 2475 9.988350 ACGAACTGTTTATATGCAATTTCTTAG 57.012 29.630 0.00 0.00 0.00 2.18
2063 2526 2.093711 TGATCATGTGTCGGTTACCAGG 60.094 50.000 1.13 0.00 0.00 4.45
2067 2530 3.142951 CATGTGTCGGTTACCAGGAAAA 58.857 45.455 1.13 0.00 0.00 2.29
2075 2538 4.948621 TCGGTTACCAGGAAAAGTTTTCAA 59.051 37.500 25.59 11.22 0.00 2.69
2113 2576 6.560711 AGTTTGTTGTTTCTTTAAGCATCGT 58.439 32.000 0.00 0.00 0.00 3.73
2114 2577 6.691388 AGTTTGTTGTTTCTTTAAGCATCGTC 59.309 34.615 0.00 0.00 0.00 4.20
2115 2578 4.768145 TGTTGTTTCTTTAAGCATCGTCG 58.232 39.130 0.00 0.00 0.00 5.12
2137 2600 2.817258 GTTGCACCACCTTTACATAGCA 59.183 45.455 0.00 0.00 0.00 3.49
2138 2601 3.364460 TGCACCACCTTTACATAGCAT 57.636 42.857 0.00 0.00 0.00 3.79
2139 2602 4.495690 TGCACCACCTTTACATAGCATA 57.504 40.909 0.00 0.00 0.00 3.14
2159 2622 5.758924 CATAGTTGCCAGATCAACATCATG 58.241 41.667 8.98 5.77 46.44 3.07
2166 2629 2.219445 CAGATCAACATCATGCCGTACG 59.781 50.000 8.69 8.69 0.00 3.67
2181 2644 2.482721 CCGTACGACAGAATGCCTTTTT 59.517 45.455 18.76 0.00 42.53 1.94
2227 2690 9.820725 ATTCAGAAGATTCAGAAGATCTTACAG 57.179 33.333 8.25 1.45 36.38 2.74
2550 3085 0.179062 GCATCCTGCAGGTAGACCAG 60.179 60.000 31.58 15.12 44.26 4.00
2570 3112 3.370366 CAGTCACTCACTGCTATGCTTTC 59.630 47.826 0.00 0.00 46.30 2.62
2577 3119 2.681344 CACTGCTATGCTTTCATGCTCA 59.319 45.455 0.00 0.00 34.22 4.26
2582 3124 2.211250 ATGCTTTCATGCTCAGGTGT 57.789 45.000 0.00 0.00 0.00 4.16
2589 3131 3.808466 TCATGCTCAGGTGTATGTCTC 57.192 47.619 0.00 0.00 32.97 3.36
2648 3191 2.912956 ACAGGTTCTGGCATTCTTCCTA 59.087 45.455 0.00 0.00 35.51 2.94
2817 3360 1.306141 AACCTCGCCATCCTCCTCA 60.306 57.895 0.00 0.00 0.00 3.86
2820 3363 1.117749 CCTCGCCATCCTCCTCATCA 61.118 60.000 0.00 0.00 0.00 3.07
2905 3452 2.177977 GTATTGAGCTCTGTCACGACG 58.822 52.381 16.19 0.00 0.00 5.12
2993 3557 6.353404 TCTTTTCTGGTCTGTTTTTGGTTT 57.647 33.333 0.00 0.00 0.00 3.27
3003 3567 6.593770 GGTCTGTTTTTGGTTTTCTTGTGATT 59.406 34.615 0.00 0.00 0.00 2.57
3006 3570 9.712305 TCTGTTTTTGGTTTTCTTGTGATTTTA 57.288 25.926 0.00 0.00 0.00 1.52
3034 3598 8.634335 TTTGTGAAATCCTGATGACTGAAATA 57.366 30.769 0.00 0.00 0.00 1.40
3041 3605 7.976135 ATCCTGATGACTGAAATATAAGTGC 57.024 36.000 0.00 0.00 0.00 4.40
3047 3611 7.928167 TGATGACTGAAATATAAGTGCAGTAGG 59.072 37.037 0.00 0.00 39.68 3.18
3169 3733 1.202521 TCGTGAGCCTATACGACCGTA 60.203 52.381 4.67 4.67 43.54 4.02
3170 3734 1.802960 CGTGAGCCTATACGACCGTAT 59.197 52.381 17.53 17.53 42.54 3.06
3171 3735 2.412455 CGTGAGCCTATACGACCGTATG 60.412 54.545 21.19 12.64 42.54 2.39
3172 3736 2.810274 GTGAGCCTATACGACCGTATGA 59.190 50.000 21.19 7.93 40.98 2.15
3173 3737 3.251729 GTGAGCCTATACGACCGTATGAA 59.748 47.826 21.19 5.37 40.98 2.57
3174 3738 3.884693 TGAGCCTATACGACCGTATGAAA 59.115 43.478 21.19 4.75 40.98 2.69
3175 3739 4.338964 TGAGCCTATACGACCGTATGAAAA 59.661 41.667 21.19 4.45 40.98 2.29
3176 3740 5.163530 TGAGCCTATACGACCGTATGAAAAA 60.164 40.000 21.19 4.13 40.98 1.94
3177 3741 5.850614 AGCCTATACGACCGTATGAAAAAT 58.149 37.500 21.19 1.94 40.98 1.82
3178 3742 6.285990 AGCCTATACGACCGTATGAAAAATT 58.714 36.000 21.19 0.41 40.98 1.82
3179 3743 6.202188 AGCCTATACGACCGTATGAAAAATTG 59.798 38.462 21.19 0.90 40.98 2.32
3180 3744 6.018507 GCCTATACGACCGTATGAAAAATTGT 60.019 38.462 21.19 0.00 40.98 2.71
3181 3745 7.342194 CCTATACGACCGTATGAAAAATTGTG 58.658 38.462 21.19 3.28 40.98 3.33
3182 3746 4.413495 ACGACCGTATGAAAAATTGTGG 57.587 40.909 0.00 0.00 0.00 4.17
3183 3747 3.168193 CGACCGTATGAAAAATTGTGGC 58.832 45.455 0.00 0.00 0.00 5.01
3184 3748 3.365465 CGACCGTATGAAAAATTGTGGCA 60.365 43.478 0.00 0.00 0.00 4.92
3185 3749 3.908213 ACCGTATGAAAAATTGTGGCAC 58.092 40.909 11.55 11.55 0.00 5.01
3186 3750 3.319405 ACCGTATGAAAAATTGTGGCACA 59.681 39.130 17.96 17.96 0.00 4.57
3187 3751 4.202161 ACCGTATGAAAAATTGTGGCACAA 60.202 37.500 32.77 32.77 44.16 3.33
3188 3752 4.747108 CCGTATGAAAAATTGTGGCACAAA 59.253 37.500 34.01 18.66 44.16 2.83
3189 3753 5.332959 CCGTATGAAAAATTGTGGCACAAAC 60.333 40.000 34.01 23.14 44.16 2.93
3190 3754 5.332959 CGTATGAAAAATTGTGGCACAAACC 60.333 40.000 34.01 20.77 44.16 3.27
3191 3755 2.932614 TGAAAAATTGTGGCACAAACCG 59.067 40.909 34.01 0.00 44.16 4.44
3192 3756 1.294857 AAAATTGTGGCACAAACCGC 58.705 45.000 34.01 0.00 44.16 5.68
3208 3772 3.697747 GCAGGCTGGGCATTGCAA 61.698 61.111 17.64 0.00 39.35 4.08
3209 3773 3.061752 CAGGCTGGGCATTGCAAA 58.938 55.556 11.39 0.00 0.00 3.68
3210 3774 1.371932 CAGGCTGGGCATTGCAAAA 59.628 52.632 11.39 0.00 0.00 2.44
3211 3775 0.035820 CAGGCTGGGCATTGCAAAAT 60.036 50.000 11.39 0.00 0.00 1.82
3212 3776 0.251073 AGGCTGGGCATTGCAAAATC 59.749 50.000 11.39 0.00 0.00 2.17
3213 3777 0.745486 GGCTGGGCATTGCAAAATCC 60.745 55.000 11.39 5.79 0.00 3.01
3214 3778 0.036199 GCTGGGCATTGCAAAATCCA 60.036 50.000 11.39 10.31 0.00 3.41
3215 3779 1.611148 GCTGGGCATTGCAAAATCCAA 60.611 47.619 11.39 0.00 0.00 3.53
3216 3780 2.078392 CTGGGCATTGCAAAATCCAAC 58.922 47.619 11.39 0.00 0.00 3.77
3217 3781 1.271271 TGGGCATTGCAAAATCCAACC 60.271 47.619 11.39 0.00 0.00 3.77
3218 3782 1.003464 GGGCATTGCAAAATCCAACCT 59.997 47.619 11.39 0.00 0.00 3.50
3219 3783 2.078392 GGCATTGCAAAATCCAACCTG 58.922 47.619 11.39 0.00 0.00 4.00
3220 3784 2.289569 GGCATTGCAAAATCCAACCTGA 60.290 45.455 11.39 0.00 0.00 3.86
3221 3785 3.401182 GCATTGCAAAATCCAACCTGAA 58.599 40.909 1.71 0.00 0.00 3.02
3222 3786 3.814283 GCATTGCAAAATCCAACCTGAAA 59.186 39.130 1.71 0.00 0.00 2.69
3223 3787 4.275443 GCATTGCAAAATCCAACCTGAAAA 59.725 37.500 1.71 0.00 0.00 2.29
3224 3788 5.048573 GCATTGCAAAATCCAACCTGAAAAT 60.049 36.000 1.71 0.00 0.00 1.82
3225 3789 6.515365 GCATTGCAAAATCCAACCTGAAAATT 60.515 34.615 1.71 0.00 0.00 1.82
3226 3790 6.616774 TTGCAAAATCCAACCTGAAAATTC 57.383 33.333 0.00 0.00 0.00 2.17
3227 3791 5.678583 TGCAAAATCCAACCTGAAAATTCA 58.321 33.333 0.00 0.00 35.57 2.57
3228 3792 6.118170 TGCAAAATCCAACCTGAAAATTCAA 58.882 32.000 0.00 0.00 36.64 2.69
3229 3793 6.260493 TGCAAAATCCAACCTGAAAATTCAAG 59.740 34.615 0.00 0.00 36.64 3.02
3230 3794 6.293571 GCAAAATCCAACCTGAAAATTCAAGG 60.294 38.462 0.00 4.22 36.64 3.61
3231 3795 4.541973 ATCCAACCTGAAAATTCAAGGC 57.458 40.909 9.92 0.00 36.64 4.35
3232 3796 3.575805 TCCAACCTGAAAATTCAAGGCT 58.424 40.909 9.92 0.00 36.64 4.58
3233 3797 3.573967 TCCAACCTGAAAATTCAAGGCTC 59.426 43.478 9.92 0.00 36.64 4.70
3234 3798 3.306294 CCAACCTGAAAATTCAAGGCTCC 60.306 47.826 9.92 0.00 36.64 4.70
3235 3799 3.243359 ACCTGAAAATTCAAGGCTCCA 57.757 42.857 9.92 0.00 36.64 3.86
3236 3800 2.893489 ACCTGAAAATTCAAGGCTCCAC 59.107 45.455 9.92 0.00 36.64 4.02
3237 3801 2.232208 CCTGAAAATTCAAGGCTCCACC 59.768 50.000 0.00 0.00 36.64 4.61
3238 3802 2.232208 CTGAAAATTCAAGGCTCCACCC 59.768 50.000 0.00 0.00 36.64 4.61
3239 3803 2.158325 TGAAAATTCAAGGCTCCACCCT 60.158 45.455 0.00 0.00 33.04 4.34
3240 3804 1.928868 AAATTCAAGGCTCCACCCTG 58.071 50.000 0.00 0.00 40.58 4.45
3241 3805 0.040204 AATTCAAGGCTCCACCCTGG 59.960 55.000 0.00 0.00 40.58 4.45
3242 3806 1.867595 ATTCAAGGCTCCACCCTGGG 61.868 60.000 12.28 12.28 40.58 4.45
3243 3807 4.748144 CAAGGCTCCACCCTGGGC 62.748 72.222 14.08 0.00 40.58 5.36
3246 3810 4.748144 GGCTCCACCCTGGGCAAG 62.748 72.222 14.08 8.93 38.32 4.01
3248 3812 4.748144 CTCCACCCTGGGCAAGCC 62.748 72.222 14.08 1.52 38.32 4.35
3251 3815 3.970410 CACCCTGGGCAAGCCAGA 61.970 66.667 14.08 0.00 37.47 3.86
3252 3816 3.655211 ACCCTGGGCAAGCCAGAG 61.655 66.667 14.08 7.82 37.47 3.35
3253 3817 4.437587 CCCTGGGCAAGCCAGAGG 62.438 72.222 13.87 15.95 37.47 3.69
3267 3831 4.733972 GCCAGAGGCGAGAAAATAATAC 57.266 45.455 0.00 0.00 39.62 1.89
3268 3832 4.381411 GCCAGAGGCGAGAAAATAATACT 58.619 43.478 0.00 0.00 39.62 2.12
3269 3833 4.449405 GCCAGAGGCGAGAAAATAATACTC 59.551 45.833 0.00 0.00 39.62 2.59
3270 3834 4.991687 CCAGAGGCGAGAAAATAATACTCC 59.008 45.833 0.00 0.00 0.00 3.85
3271 3835 4.991687 CAGAGGCGAGAAAATAATACTCCC 59.008 45.833 0.00 0.00 0.00 4.30
3272 3836 4.902448 AGAGGCGAGAAAATAATACTCCCT 59.098 41.667 0.00 0.00 35.60 4.20
3273 3837 5.011227 AGAGGCGAGAAAATAATACTCCCTC 59.989 44.000 4.23 4.23 42.03 4.30
3274 3838 4.902448 AGGCGAGAAAATAATACTCCCTCT 59.098 41.667 0.00 0.00 31.09 3.69
3275 3839 4.991687 GGCGAGAAAATAATACTCCCTCTG 59.008 45.833 0.00 0.00 0.00 3.35
3276 3840 5.453480 GGCGAGAAAATAATACTCCCTCTGT 60.453 44.000 0.00 0.00 0.00 3.41
3277 3841 6.049790 GCGAGAAAATAATACTCCCTCTGTT 58.950 40.000 0.00 0.00 0.00 3.16
3278 3842 6.539103 GCGAGAAAATAATACTCCCTCTGTTT 59.461 38.462 0.00 0.00 0.00 2.83
3279 3843 7.254488 GCGAGAAAATAATACTCCCTCTGTTTC 60.254 40.741 0.00 0.00 0.00 2.78
3280 3844 7.982354 CGAGAAAATAATACTCCCTCTGTTTCT 59.018 37.037 0.00 0.00 35.95 2.52
3291 3855 8.794335 ACTCCCTCTGTTTCTAAATATTTGTC 57.206 34.615 11.05 0.00 0.00 3.18
3292 3856 8.606830 ACTCCCTCTGTTTCTAAATATTTGTCT 58.393 33.333 11.05 0.00 0.00 3.41
3293 3857 9.454859 CTCCCTCTGTTTCTAAATATTTGTCTT 57.545 33.333 11.05 0.00 0.00 3.01
3294 3858 9.807921 TCCCTCTGTTTCTAAATATTTGTCTTT 57.192 29.630 11.05 0.00 0.00 2.52
3313 3877 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
3314 3878 9.130661 TGTCTTTTTAGAGATTTCAAATGGACA 57.869 29.630 0.00 0.00 0.00 4.02
3315 3879 9.965824 GTCTTTTTAGAGATTTCAAATGGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3316 3880 9.965824 TCTTTTTAGAGATTTCAAATGGACAAC 57.034 29.630 0.00 0.00 0.00 3.32
3317 3881 9.196552 CTTTTTAGAGATTTCAAATGGACAACC 57.803 33.333 0.00 0.00 0.00 3.77
3371 3935 7.913674 AGTGTAGATTCACTCATTTTCCTTC 57.086 36.000 0.00 0.00 44.07 3.46
3372 3936 6.591834 AGTGTAGATTCACTCATTTTCCTTCG 59.408 38.462 0.00 0.00 44.07 3.79
3373 3937 4.954092 AGATTCACTCATTTTCCTTCGC 57.046 40.909 0.00 0.00 0.00 4.70
3374 3938 4.326826 AGATTCACTCATTTTCCTTCGCA 58.673 39.130 0.00 0.00 0.00 5.10
3375 3939 4.946157 AGATTCACTCATTTTCCTTCGCAT 59.054 37.500 0.00 0.00 0.00 4.73
3376 3940 4.424061 TTCACTCATTTTCCTTCGCATG 57.576 40.909 0.00 0.00 0.00 4.06
3377 3941 3.411446 TCACTCATTTTCCTTCGCATGT 58.589 40.909 0.00 0.00 0.00 3.21
3378 3942 4.574892 TCACTCATTTTCCTTCGCATGTA 58.425 39.130 0.00 0.00 0.00 2.29
3379 3943 5.000591 TCACTCATTTTCCTTCGCATGTAA 58.999 37.500 0.00 0.00 0.00 2.41
3380 3944 5.647658 TCACTCATTTTCCTTCGCATGTAAT 59.352 36.000 0.00 0.00 0.00 1.89
3381 3945 5.967674 CACTCATTTTCCTTCGCATGTAATC 59.032 40.000 0.00 0.00 0.00 1.75
3382 3946 5.647658 ACTCATTTTCCTTCGCATGTAATCA 59.352 36.000 0.00 0.00 0.00 2.57
3383 3947 5.879237 TCATTTTCCTTCGCATGTAATCAC 58.121 37.500 0.00 0.00 0.00 3.06
3384 3948 5.647658 TCATTTTCCTTCGCATGTAATCACT 59.352 36.000 0.00 0.00 0.00 3.41
3385 3949 5.957842 TTTTCCTTCGCATGTAATCACTT 57.042 34.783 0.00 0.00 0.00 3.16
3386 3950 4.944962 TTCCTTCGCATGTAATCACTTG 57.055 40.909 0.00 0.00 33.92 3.16
3387 3951 3.937814 TCCTTCGCATGTAATCACTTGT 58.062 40.909 0.00 0.00 33.46 3.16
3388 3952 4.323417 TCCTTCGCATGTAATCACTTGTT 58.677 39.130 0.00 0.00 33.46 2.83
3389 3953 4.154015 TCCTTCGCATGTAATCACTTGTTG 59.846 41.667 0.00 0.00 33.46 3.33
3390 3954 4.154015 CCTTCGCATGTAATCACTTGTTGA 59.846 41.667 0.00 0.00 39.11 3.18
3391 3955 5.334802 CCTTCGCATGTAATCACTTGTTGAA 60.335 40.000 0.00 0.00 37.92 2.69
3392 3956 5.681337 TCGCATGTAATCACTTGTTGAAA 57.319 34.783 0.00 0.00 37.92 2.69
3393 3957 6.252967 TCGCATGTAATCACTTGTTGAAAT 57.747 33.333 0.00 0.00 37.92 2.17
3394 3958 6.314018 TCGCATGTAATCACTTGTTGAAATC 58.686 36.000 0.00 0.00 37.92 2.17
3395 3959 6.149308 TCGCATGTAATCACTTGTTGAAATCT 59.851 34.615 0.00 0.00 37.92 2.40
3396 3960 6.467047 CGCATGTAATCACTTGTTGAAATCTC 59.533 38.462 0.00 0.00 37.92 2.75
3397 3961 7.533426 GCATGTAATCACTTGTTGAAATCTCT 58.467 34.615 0.00 0.00 37.92 3.10
3398 3962 8.668353 GCATGTAATCACTTGTTGAAATCTCTA 58.332 33.333 0.00 0.00 37.92 2.43
3401 3965 9.996554 TGTAATCACTTGTTGAAATCTCTAGAA 57.003 29.630 0.00 0.00 37.92 2.10
3404 3968 9.784531 AATCACTTGTTGAAATCTCTAGAAAGA 57.215 29.630 0.00 0.00 37.92 2.52
3405 3969 8.594881 TCACTTGTTGAAATCTCTAGAAAGAC 57.405 34.615 0.00 0.00 0.00 3.01
3406 3970 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
3407 3971 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
3408 3972 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
3428 3992 9.981460 AGACAAATATTTAGGAATGAAGGAAGT 57.019 29.630 0.00 0.00 0.00 3.01
3437 4001 9.862149 TTTAGGAATGAAGGAAGTACTTCTTTT 57.138 29.630 27.67 23.10 45.49 2.27
3438 4002 7.987750 AGGAATGAAGGAAGTACTTCTTTTC 57.012 36.000 27.67 27.78 45.49 2.29
3439 4003 7.518188 AGGAATGAAGGAAGTACTTCTTTTCA 58.482 34.615 33.09 33.09 45.49 2.69
3440 4004 7.998964 AGGAATGAAGGAAGTACTTCTTTTCAA 59.001 33.333 33.79 25.16 45.49 2.69
3441 4005 8.630037 GGAATGAAGGAAGTACTTCTTTTCAAA 58.370 33.333 33.79 23.32 45.49 2.69
3471 4035 9.578576 AATAATGAAGCTATGCTCAATTTAGGA 57.421 29.630 0.00 0.00 38.25 2.94
3472 4036 7.886629 AATGAAGCTATGCTCAATTTAGGAA 57.113 32.000 0.00 0.00 38.25 3.36
3473 4037 7.886629 ATGAAGCTATGCTCAATTTAGGAAA 57.113 32.000 0.00 0.00 38.25 3.13
3474 4038 7.701539 TGAAGCTATGCTCAATTTAGGAAAA 57.298 32.000 0.00 0.00 38.25 2.29
3475 4039 8.297470 TGAAGCTATGCTCAATTTAGGAAAAT 57.703 30.769 0.00 0.00 38.25 1.82
3476 4040 9.407380 TGAAGCTATGCTCAATTTAGGAAAATA 57.593 29.630 0.00 0.00 38.25 1.40
3499 4063 9.646522 AATAATGATAATAACTCACTTTGGGCT 57.353 29.630 0.00 0.00 0.00 5.19
3500 4064 7.961326 AATGATAATAACTCACTTTGGGCTT 57.039 32.000 0.00 0.00 0.00 4.35
3501 4065 7.961326 ATGATAATAACTCACTTTGGGCTTT 57.039 32.000 0.00 0.00 0.00 3.51
3502 4066 7.775053 TGATAATAACTCACTTTGGGCTTTT 57.225 32.000 0.00 0.00 0.00 2.27
3503 4067 7.826690 TGATAATAACTCACTTTGGGCTTTTC 58.173 34.615 0.00 0.00 0.00 2.29
3504 4068 4.766404 ATAACTCACTTTGGGCTTTTCG 57.234 40.909 0.00 0.00 0.00 3.46
3505 4069 1.318576 ACTCACTTTGGGCTTTTCGG 58.681 50.000 0.00 0.00 0.00 4.30
3506 4070 0.039165 CTCACTTTGGGCTTTTCGGC 60.039 55.000 0.00 0.00 37.49 5.54
3507 4071 0.467290 TCACTTTGGGCTTTTCGGCT 60.467 50.000 0.00 0.00 38.46 5.52
3508 4072 0.039165 CACTTTGGGCTTTTCGGCTC 60.039 55.000 0.00 0.00 38.46 4.70
3509 4073 1.210155 CTTTGGGCTTTTCGGCTCG 59.790 57.895 0.00 0.00 35.04 5.03
3510 4074 2.200170 CTTTGGGCTTTTCGGCTCGG 62.200 60.000 0.00 0.00 35.04 4.63
3511 4075 2.969300 TTTGGGCTTTTCGGCTCGGT 62.969 55.000 0.00 0.00 35.04 4.69
3512 4076 2.671963 GGGCTTTTCGGCTCGGTT 60.672 61.111 0.00 0.00 38.46 4.44
3513 4077 2.265904 GGGCTTTTCGGCTCGGTTT 61.266 57.895 0.00 0.00 38.46 3.27
3514 4078 1.658114 GGCTTTTCGGCTCGGTTTT 59.342 52.632 0.00 0.00 34.85 2.43
3515 4079 0.876399 GGCTTTTCGGCTCGGTTTTA 59.124 50.000 0.00 0.00 34.85 1.52
3516 4080 1.267533 GGCTTTTCGGCTCGGTTTTAA 59.732 47.619 0.00 0.00 34.85 1.52
3517 4081 2.581637 GCTTTTCGGCTCGGTTTTAAG 58.418 47.619 0.00 0.00 0.00 1.85
3518 4082 2.031420 GCTTTTCGGCTCGGTTTTAAGT 60.031 45.455 0.00 0.00 0.00 2.24
3519 4083 3.551551 CTTTTCGGCTCGGTTTTAAGTG 58.448 45.455 0.00 0.00 0.00 3.16
3520 4084 1.515081 TTCGGCTCGGTTTTAAGTGG 58.485 50.000 0.00 0.00 0.00 4.00
3521 4085 0.952010 TCGGCTCGGTTTTAAGTGGC 60.952 55.000 0.00 0.00 0.00 5.01
3522 4086 1.231958 CGGCTCGGTTTTAAGTGGCA 61.232 55.000 0.00 0.00 0.00 4.92
3523 4087 0.240145 GGCTCGGTTTTAAGTGGCAC 59.760 55.000 10.29 10.29 0.00 5.01
3524 4088 0.240145 GCTCGGTTTTAAGTGGCACC 59.760 55.000 15.27 0.00 0.00 5.01
3525 4089 1.892209 CTCGGTTTTAAGTGGCACCT 58.108 50.000 15.27 3.43 0.00 4.00
3526 4090 1.804748 CTCGGTTTTAAGTGGCACCTC 59.195 52.381 15.27 0.00 0.00 3.85
3527 4091 0.515564 CGGTTTTAAGTGGCACCTCG 59.484 55.000 15.27 4.40 0.00 4.63
3528 4092 0.879090 GGTTTTAAGTGGCACCTCGG 59.121 55.000 15.27 0.00 0.00 4.63
3529 4093 0.240145 GTTTTAAGTGGCACCTCGGC 59.760 55.000 15.27 0.00 41.67 5.54
3537 4101 2.203070 GCACCTCGGCCCACTATG 60.203 66.667 0.00 0.00 0.00 2.23
3538 4102 2.505982 CACCTCGGCCCACTATGG 59.494 66.667 0.00 0.00 37.25 2.74
3546 4110 2.976099 GCCCACTATGGCCTTTTGT 58.024 52.632 3.32 0.00 46.11 2.83
3547 4111 0.532115 GCCCACTATGGCCTTTTGTG 59.468 55.000 3.32 10.48 46.11 3.33
3548 4112 1.923356 CCCACTATGGCCTTTTGTGT 58.077 50.000 3.32 0.00 35.79 3.72
3549 4113 1.818674 CCCACTATGGCCTTTTGTGTC 59.181 52.381 3.32 0.00 35.79 3.67
3550 4114 1.468520 CCACTATGGCCTTTTGTGTCG 59.531 52.381 3.32 0.00 0.00 4.35
3551 4115 1.468520 CACTATGGCCTTTTGTGTCGG 59.531 52.381 3.32 0.00 0.00 4.79
3552 4116 1.094785 CTATGGCCTTTTGTGTCGGG 58.905 55.000 3.32 0.00 0.00 5.14
3553 4117 0.693622 TATGGCCTTTTGTGTCGGGA 59.306 50.000 3.32 0.00 0.00 5.14
3554 4118 0.039618 ATGGCCTTTTGTGTCGGGAT 59.960 50.000 3.32 0.00 0.00 3.85
3555 4119 0.893270 TGGCCTTTTGTGTCGGGATG 60.893 55.000 3.32 0.00 0.00 3.51
3556 4120 0.893727 GGCCTTTTGTGTCGGGATGT 60.894 55.000 0.00 0.00 0.00 3.06
3557 4121 0.521735 GCCTTTTGTGTCGGGATGTC 59.478 55.000 0.00 0.00 0.00 3.06
3558 4122 1.165270 CCTTTTGTGTCGGGATGTCC 58.835 55.000 0.00 0.00 0.00 4.02
3559 4123 1.271379 CCTTTTGTGTCGGGATGTCCT 60.271 52.381 0.00 0.00 35.95 3.85
3560 4124 2.027561 CCTTTTGTGTCGGGATGTCCTA 60.028 50.000 0.00 0.00 35.95 2.94
3561 4125 3.558321 CCTTTTGTGTCGGGATGTCCTAA 60.558 47.826 0.00 0.00 35.95 2.69
3562 4126 3.328382 TTTGTGTCGGGATGTCCTAAG 57.672 47.619 0.00 0.00 35.95 2.18
3563 4127 0.535335 TGTGTCGGGATGTCCTAAGC 59.465 55.000 0.00 0.00 35.95 3.09
3564 4128 0.179081 GTGTCGGGATGTCCTAAGCC 60.179 60.000 0.00 0.00 35.95 4.35
3565 4129 1.335132 TGTCGGGATGTCCTAAGCCC 61.335 60.000 0.00 0.00 37.21 5.19
3566 4130 1.002403 TCGGGATGTCCTAAGCCCA 59.998 57.895 0.00 0.00 40.71 5.36
3567 4131 1.048724 TCGGGATGTCCTAAGCCCAG 61.049 60.000 0.00 0.00 40.71 4.45
3568 4132 1.048724 CGGGATGTCCTAAGCCCAGA 61.049 60.000 0.00 0.00 40.71 3.86
3569 4133 1.439543 GGGATGTCCTAAGCCCAGAT 58.560 55.000 0.00 0.00 40.39 2.90
3570 4134 2.621070 GGGATGTCCTAAGCCCAGATA 58.379 52.381 0.00 0.00 40.39 1.98
3571 4135 2.569404 GGGATGTCCTAAGCCCAGATAG 59.431 54.545 0.00 0.00 40.39 2.08
3572 4136 3.243724 GGATGTCCTAAGCCCAGATAGT 58.756 50.000 0.00 0.00 0.00 2.12
3573 4137 3.259625 GGATGTCCTAAGCCCAGATAGTC 59.740 52.174 0.00 0.00 0.00 2.59
3574 4138 3.398318 TGTCCTAAGCCCAGATAGTCA 57.602 47.619 0.00 0.00 0.00 3.41
3575 4139 3.719871 TGTCCTAAGCCCAGATAGTCAA 58.280 45.455 0.00 0.00 0.00 3.18
3576 4140 4.298626 TGTCCTAAGCCCAGATAGTCAAT 58.701 43.478 0.00 0.00 0.00 2.57
3577 4141 5.464069 TGTCCTAAGCCCAGATAGTCAATA 58.536 41.667 0.00 0.00 0.00 1.90
3578 4142 5.304614 TGTCCTAAGCCCAGATAGTCAATAC 59.695 44.000 0.00 0.00 0.00 1.89
3579 4143 5.540719 GTCCTAAGCCCAGATAGTCAATACT 59.459 44.000 0.00 0.00 39.91 2.12
3580 4144 6.720288 GTCCTAAGCCCAGATAGTCAATACTA 59.280 42.308 0.00 0.00 42.35 1.82
3581 4145 6.720288 TCCTAAGCCCAGATAGTCAATACTAC 59.280 42.308 0.00 0.00 40.98 2.73
3582 4146 5.810080 AAGCCCAGATAGTCAATACTACC 57.190 43.478 0.00 0.00 40.98 3.18
3583 4147 4.161102 AGCCCAGATAGTCAATACTACCC 58.839 47.826 0.00 0.00 40.98 3.69
3584 4148 3.261137 GCCCAGATAGTCAATACTACCCC 59.739 52.174 0.00 0.00 40.98 4.95
3585 4149 3.838903 CCCAGATAGTCAATACTACCCCC 59.161 52.174 0.00 0.00 40.98 5.40
3602 4166 3.733443 CCCCCTTGAGTTGAAACTTTG 57.267 47.619 0.00 0.00 39.88 2.77
3603 4167 2.365293 CCCCCTTGAGTTGAAACTTTGG 59.635 50.000 0.00 1.10 39.88 3.28
3604 4168 2.224042 CCCCTTGAGTTGAAACTTTGGC 60.224 50.000 0.00 0.00 39.88 4.52
3605 4169 2.430332 CCCTTGAGTTGAAACTTTGGCA 59.570 45.455 0.00 0.00 39.88 4.92
3606 4170 3.118811 CCCTTGAGTTGAAACTTTGGCAA 60.119 43.478 0.00 0.00 39.88 4.52
3607 4171 4.114794 CCTTGAGTTGAAACTTTGGCAAG 58.885 43.478 0.00 12.20 39.88 4.01
3608 4172 4.142182 CCTTGAGTTGAAACTTTGGCAAGA 60.142 41.667 17.43 0.00 38.44 3.02
3609 4173 5.398603 TTGAGTTGAAACTTTGGCAAGAA 57.601 34.783 0.00 0.00 39.88 2.52
3610 4174 5.398603 TGAGTTGAAACTTTGGCAAGAAA 57.601 34.783 0.00 0.00 39.88 2.52
3611 4175 5.410067 TGAGTTGAAACTTTGGCAAGAAAG 58.590 37.500 0.00 0.00 39.88 2.62
3612 4176 5.184864 TGAGTTGAAACTTTGGCAAGAAAGA 59.815 36.000 0.00 0.00 39.88 2.52
3613 4177 6.127366 TGAGTTGAAACTTTGGCAAGAAAGAT 60.127 34.615 0.00 0.00 39.88 2.40
3614 4178 7.068103 TGAGTTGAAACTTTGGCAAGAAAGATA 59.932 33.333 0.00 0.00 39.88 1.98
3615 4179 7.955918 AGTTGAAACTTTGGCAAGAAAGATAT 58.044 30.769 0.00 0.00 35.21 1.63
3616 4180 9.077885 AGTTGAAACTTTGGCAAGAAAGATATA 57.922 29.630 0.00 0.00 35.21 0.86
3617 4181 9.860898 GTTGAAACTTTGGCAAGAAAGATATAT 57.139 29.630 0.00 0.00 36.58 0.86
3618 4182 9.859427 TTGAAACTTTGGCAAGAAAGATATATG 57.141 29.630 0.00 0.00 36.58 1.78
3619 4183 8.469200 TGAAACTTTGGCAAGAAAGATATATGG 58.531 33.333 0.00 0.00 36.58 2.74
3620 4184 6.966534 ACTTTGGCAAGAAAGATATATGGG 57.033 37.500 0.00 0.00 36.58 4.00
3621 4185 6.435164 ACTTTGGCAAGAAAGATATATGGGT 58.565 36.000 0.00 0.00 36.58 4.51
3622 4186 6.547510 ACTTTGGCAAGAAAGATATATGGGTC 59.452 38.462 0.00 0.00 36.58 4.46
3623 4187 4.985538 TGGCAAGAAAGATATATGGGTCC 58.014 43.478 0.00 0.00 0.00 4.46
3624 4188 4.415179 TGGCAAGAAAGATATATGGGTCCA 59.585 41.667 0.00 0.00 0.00 4.02
3625 4189 5.103728 TGGCAAGAAAGATATATGGGTCCAA 60.104 40.000 0.00 0.00 0.00 3.53
3626 4190 5.833131 GGCAAGAAAGATATATGGGTCCAAA 59.167 40.000 0.00 0.00 0.00 3.28
3627 4191 6.494835 GGCAAGAAAGATATATGGGTCCAAAT 59.505 38.462 0.00 0.00 0.00 2.32
3628 4192 7.669722 GGCAAGAAAGATATATGGGTCCAAATA 59.330 37.037 0.00 0.00 0.00 1.40
3629 4193 8.734386 GCAAGAAAGATATATGGGTCCAAATAG 58.266 37.037 0.00 0.00 0.00 1.73
3630 4194 9.799106 CAAGAAAGATATATGGGTCCAAATAGT 57.201 33.333 0.00 0.00 0.00 2.12
3663 4227 7.795482 TTATAAATCCCACACTTTGATACGG 57.205 36.000 0.00 0.00 0.00 4.02
3664 4228 2.710096 ATCCCACACTTTGATACGGG 57.290 50.000 0.00 0.00 34.81 5.28
3665 4229 1.354101 TCCCACACTTTGATACGGGT 58.646 50.000 0.00 0.00 35.08 5.28
3666 4230 2.538222 TCCCACACTTTGATACGGGTA 58.462 47.619 0.00 0.00 35.08 3.69
3667 4231 3.109151 TCCCACACTTTGATACGGGTAT 58.891 45.455 0.00 0.00 35.08 2.73
3668 4232 3.520317 TCCCACACTTTGATACGGGTATT 59.480 43.478 0.00 0.00 35.08 1.89
3669 4233 4.019141 TCCCACACTTTGATACGGGTATTT 60.019 41.667 0.00 0.00 35.08 1.40
3670 4234 5.189342 TCCCACACTTTGATACGGGTATTTA 59.811 40.000 0.00 0.00 35.08 1.40
3671 4235 6.059484 CCCACACTTTGATACGGGTATTTAT 58.941 40.000 0.00 0.00 0.00 1.40
3672 4236 6.544564 CCCACACTTTGATACGGGTATTTATT 59.455 38.462 0.00 0.00 0.00 1.40
3673 4237 7.716123 CCCACACTTTGATACGGGTATTTATTA 59.284 37.037 0.00 0.00 0.00 0.98
3674 4238 9.280174 CCACACTTTGATACGGGTATTTATTAT 57.720 33.333 0.00 0.00 0.00 1.28
3693 4257 9.588774 TTTATTATTATATGTTTTCAGCGCGTC 57.411 29.630 8.43 0.00 0.00 5.19
3694 4258 6.838198 TTATTATATGTTTTCAGCGCGTCT 57.162 33.333 8.43 1.94 0.00 4.18
3695 4259 7.933728 TTATTATATGTTTTCAGCGCGTCTA 57.066 32.000 8.43 0.00 0.00 2.59
3696 4260 8.528917 TTATTATATGTTTTCAGCGCGTCTAT 57.471 30.769 8.43 0.00 0.00 1.98
3697 4261 6.838198 TTATATGTTTTCAGCGCGTCTATT 57.162 33.333 8.43 0.00 0.00 1.73
3698 4262 5.734855 ATATGTTTTCAGCGCGTCTATTT 57.265 34.783 8.43 0.00 0.00 1.40
3699 4263 3.889196 TGTTTTCAGCGCGTCTATTTT 57.111 38.095 8.43 0.00 0.00 1.82
3700 4264 3.550561 TGTTTTCAGCGCGTCTATTTTG 58.449 40.909 8.43 0.00 0.00 2.44
3701 4265 3.248841 TGTTTTCAGCGCGTCTATTTTGA 59.751 39.130 8.43 0.00 0.00 2.69
3702 4266 4.215965 GTTTTCAGCGCGTCTATTTTGAA 58.784 39.130 8.43 0.33 0.00 2.69
3703 4267 4.678509 TTTCAGCGCGTCTATTTTGAAT 57.321 36.364 8.43 0.00 0.00 2.57
3704 4268 4.678509 TTCAGCGCGTCTATTTTGAATT 57.321 36.364 8.43 0.00 0.00 2.17
3705 4269 5.788055 TTCAGCGCGTCTATTTTGAATTA 57.212 34.783 8.43 0.00 0.00 1.40
3706 4270 5.984233 TCAGCGCGTCTATTTTGAATTAT 57.016 34.783 8.43 0.00 0.00 1.28
3707 4271 6.358118 TCAGCGCGTCTATTTTGAATTATT 57.642 33.333 8.43 0.00 0.00 1.40
3708 4272 6.781138 TCAGCGCGTCTATTTTGAATTATTT 58.219 32.000 8.43 0.00 0.00 1.40
3709 4273 7.911343 TCAGCGCGTCTATTTTGAATTATTTA 58.089 30.769 8.43 0.00 0.00 1.40
3710 4274 7.849026 TCAGCGCGTCTATTTTGAATTATTTAC 59.151 33.333 8.43 0.00 0.00 2.01
3711 4275 7.638295 CAGCGCGTCTATTTTGAATTATTTACA 59.362 33.333 8.43 0.00 0.00 2.41
3712 4276 8.342634 AGCGCGTCTATTTTGAATTATTTACAT 58.657 29.630 8.43 0.00 0.00 2.29
3713 4277 8.953990 GCGCGTCTATTTTGAATTATTTACATT 58.046 29.630 8.43 0.00 0.00 2.71
3765 4329 9.083080 GTTGCAAACTTCAACTATTGTTAAAGT 57.917 29.630 0.00 3.06 44.18 2.66
3766 4330 8.627487 TGCAAACTTCAACTATTGTTAAAGTG 57.373 30.769 9.00 0.56 42.17 3.16
3767 4331 7.221838 TGCAAACTTCAACTATTGTTAAAGTGC 59.778 33.333 9.00 9.52 42.17 4.40
3768 4332 7.565073 GCAAACTTCAACTATTGTTAAAGTGCG 60.565 37.037 9.00 5.36 42.17 5.34
3769 4333 6.613755 ACTTCAACTATTGTTAAAGTGCGT 57.386 33.333 7.65 0.00 41.62 5.24
3770 4334 7.718272 ACTTCAACTATTGTTAAAGTGCGTA 57.282 32.000 7.65 0.00 41.62 4.42
3771 4335 8.145316 ACTTCAACTATTGTTAAAGTGCGTAA 57.855 30.769 7.65 0.00 41.62 3.18
3772 4336 8.614346 ACTTCAACTATTGTTAAAGTGCGTAAA 58.386 29.630 7.65 0.00 41.62 2.01
3773 4337 8.770850 TTCAACTATTGTTAAAGTGCGTAAAC 57.229 30.769 0.00 0.00 34.60 2.01
3774 4338 7.917597 TCAACTATTGTTAAAGTGCGTAAACA 58.082 30.769 0.00 0.00 34.60 2.83
3775 4339 8.396390 TCAACTATTGTTAAAGTGCGTAAACAA 58.604 29.630 4.13 4.13 43.63 2.83
3776 4340 9.011407 CAACTATTGTTAAAGTGCGTAAACAAA 57.989 29.630 5.52 0.00 42.98 2.83
3777 4341 9.738832 AACTATTGTTAAAGTGCGTAAACAAAT 57.261 25.926 5.52 0.00 42.98 2.32
3778 4342 9.738832 ACTATTGTTAAAGTGCGTAAACAAATT 57.261 25.926 5.52 0.00 42.98 1.82
3815 4379 9.941325 ATTTTGTTATATTCATTTTCTGGCACA 57.059 25.926 0.00 0.00 0.00 4.57
3832 4396 6.839124 TGGCACAGTTAAGATGATTTCAAT 57.161 33.333 0.00 0.00 0.00 2.57
3833 4397 6.623486 TGGCACAGTTAAGATGATTTCAATG 58.377 36.000 0.00 0.00 0.00 2.82
3834 4398 6.038356 GGCACAGTTAAGATGATTTCAATGG 58.962 40.000 0.00 0.00 0.00 3.16
3835 4399 6.350445 GGCACAGTTAAGATGATTTCAATGGT 60.350 38.462 0.00 0.00 0.00 3.55
3836 4400 7.148086 GGCACAGTTAAGATGATTTCAATGGTA 60.148 37.037 0.00 0.00 0.00 3.25
3837 4401 8.408601 GCACAGTTAAGATGATTTCAATGGTAT 58.591 33.333 0.00 0.00 0.00 2.73
3838 4402 9.941664 CACAGTTAAGATGATTTCAATGGTATC 57.058 33.333 0.00 0.00 0.00 2.24
3839 4403 9.685276 ACAGTTAAGATGATTTCAATGGTATCA 57.315 29.630 0.00 0.00 33.25 2.15
3849 4413 9.919416 TGATTTCAATGGTATCATCTTTTAGGA 57.081 29.630 0.00 0.00 32.24 2.94
3852 4416 7.807977 TCAATGGTATCATCTTTTAGGAAGC 57.192 36.000 0.00 0.00 32.24 3.86
3853 4417 6.772716 TCAATGGTATCATCTTTTAGGAAGCC 59.227 38.462 0.00 0.00 32.24 4.35
3854 4418 5.708736 TGGTATCATCTTTTAGGAAGCCA 57.291 39.130 0.00 0.00 0.00 4.75
3855 4419 6.073447 TGGTATCATCTTTTAGGAAGCCAA 57.927 37.500 0.00 0.00 0.00 4.52
3856 4420 6.122277 TGGTATCATCTTTTAGGAAGCCAAG 58.878 40.000 0.00 0.00 0.00 3.61
3857 4421 5.532779 GGTATCATCTTTTAGGAAGCCAAGG 59.467 44.000 0.00 0.00 0.00 3.61
3858 4422 3.968265 TCATCTTTTAGGAAGCCAAGGG 58.032 45.455 0.00 0.00 0.00 3.95
3859 4423 2.899303 TCTTTTAGGAAGCCAAGGGG 57.101 50.000 0.00 0.00 37.18 4.79
3860 4424 1.357761 TCTTTTAGGAAGCCAAGGGGG 59.642 52.381 0.00 0.00 40.85 5.40
3882 4446 2.874751 GCGCCACGGCTTGTTATT 59.125 55.556 6.48 0.00 39.32 1.40
3883 4447 1.514014 GCGCCACGGCTTGTTATTG 60.514 57.895 6.48 0.00 39.32 1.90
3884 4448 1.514014 CGCCACGGCTTGTTATTGC 60.514 57.895 6.48 0.00 39.32 3.56
3885 4449 1.153842 GCCACGGCTTGTTATTGCC 60.154 57.895 0.00 0.00 45.25 4.52
3890 4454 3.168773 GGCTTGTTATTGCCGGAGA 57.831 52.632 5.05 0.00 39.71 3.71
3891 4455 1.459450 GGCTTGTTATTGCCGGAGAA 58.541 50.000 5.05 0.00 39.71 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.352893 AGAGGTTTGTACAAGGTGGGTTAT 59.647 41.667 8.56 0.00 0.00 1.89
37 38 9.911788 AATGAGGCTCTAAAATTTCTAGAATGA 57.088 29.630 16.72 0.00 0.00 2.57
45 46 6.634436 CGTGCATAATGAGGCTCTAAAATTTC 59.366 38.462 16.72 0.72 32.18 2.17
55 56 1.683943 AATGCGTGCATAATGAGGCT 58.316 45.000 7.91 0.00 35.31 4.58
86 87 7.773224 TGTTTTTATTCAAGACTGTCTCCAAGA 59.227 33.333 11.31 4.64 0.00 3.02
87 88 7.930217 TGTTTTTATTCAAGACTGTCTCCAAG 58.070 34.615 11.31 2.31 0.00 3.61
88 89 7.556275 ACTGTTTTTATTCAAGACTGTCTCCAA 59.444 33.333 11.31 7.26 0.00 3.53
91 92 7.920738 ACACTGTTTTTATTCAAGACTGTCTC 58.079 34.615 11.31 0.00 0.00 3.36
116 117 8.598202 TCTATGGAAGGTGTATGTTTAGTGTA 57.402 34.615 0.00 0.00 0.00 2.90
117 118 7.490657 TCTATGGAAGGTGTATGTTTAGTGT 57.509 36.000 0.00 0.00 0.00 3.55
118 119 8.425577 CTTCTATGGAAGGTGTATGTTTAGTG 57.574 38.462 10.84 0.00 43.68 2.74
138 139 7.334421 GCAAGACTGTAACATGAAATCCTTCTA 59.666 37.037 0.00 0.00 32.33 2.10
147 148 7.801716 AAACTTAGCAAGACTGTAACATGAA 57.198 32.000 0.00 0.00 0.00 2.57
201 202 7.148289 GGTCAAATCTCACGGATATAGTATCGA 60.148 40.741 0.00 0.00 33.71 3.59
203 204 8.057536 AGGTCAAATCTCACGGATATAGTATC 57.942 38.462 0.00 0.00 33.71 2.24
209 210 8.980481 ATTTTAAGGTCAAATCTCACGGATAT 57.020 30.769 0.00 0.00 33.71 1.63
264 265 7.945134 ACATGCAAGAGAGAAACAAAAACTAT 58.055 30.769 0.00 0.00 0.00 2.12
273 274 5.698545 ACTGACTAACATGCAAGAGAGAAAC 59.301 40.000 0.00 0.00 0.00 2.78
275 276 5.473931 GACTGACTAACATGCAAGAGAGAA 58.526 41.667 0.00 0.00 0.00 2.87
277 278 4.180057 GGACTGACTAACATGCAAGAGAG 58.820 47.826 0.00 0.00 0.00 3.20
283 284 1.977854 AGGTGGACTGACTAACATGCA 59.022 47.619 0.00 0.00 0.00 3.96
284 285 2.744202 CAAGGTGGACTGACTAACATGC 59.256 50.000 0.00 0.00 0.00 4.06
285 286 2.744202 GCAAGGTGGACTGACTAACATG 59.256 50.000 0.00 0.00 0.00 3.21
287 288 1.071699 GGCAAGGTGGACTGACTAACA 59.928 52.381 0.00 0.00 0.00 2.41
290 291 0.685097 GTGGCAAGGTGGACTGACTA 59.315 55.000 0.00 0.00 0.00 2.59
291 292 1.344953 TGTGGCAAGGTGGACTGACT 61.345 55.000 0.00 0.00 0.00 3.41
292 293 1.148273 TGTGGCAAGGTGGACTGAC 59.852 57.895 0.00 0.00 0.00 3.51
293 294 1.148273 GTGTGGCAAGGTGGACTGA 59.852 57.895 0.00 0.00 0.00 3.41
294 295 1.898574 GGTGTGGCAAGGTGGACTG 60.899 63.158 0.00 0.00 0.00 3.51
305 335 1.240256 TAACATGAAACGGGTGTGGC 58.760 50.000 0.00 0.00 0.00 5.01
314 344 5.813080 AACCTAGCCGAATAACATGAAAC 57.187 39.130 0.00 0.00 0.00 2.78
315 345 6.177610 AGAAACCTAGCCGAATAACATGAAA 58.822 36.000 0.00 0.00 0.00 2.69
330 363 2.225727 GGTTGTTGCCGAAGAAACCTAG 59.774 50.000 0.00 0.00 0.00 3.02
839 1175 3.909651 GGGGGTTGGGAGGTTGCA 61.910 66.667 0.00 0.00 0.00 4.08
857 1193 1.687297 GGAGTTTAGGAGGCGGGGAG 61.687 65.000 0.00 0.00 0.00 4.30
858 1194 1.688187 GGAGTTTAGGAGGCGGGGA 60.688 63.158 0.00 0.00 0.00 4.81
903 1260 1.129809 CGGCGCAAGAACGTGTTAG 59.870 57.895 10.83 0.00 43.02 2.34
932 1290 4.124351 CCGCACAGCAATGCCAGG 62.124 66.667 0.00 0.00 42.99 4.45
962 1320 3.691342 CCTCCGTCGGTGGCAGAA 61.691 66.667 18.86 0.00 29.27 3.02
979 1337 3.213506 TGCTGATCTCACTAGCTCTCTC 58.786 50.000 0.00 0.00 38.25 3.20
999 1357 2.594303 ACCACCACACGCACCATG 60.594 61.111 0.00 0.00 0.00 3.66
1070 1431 4.827087 AGCTGTCCATCTGCGCCG 62.827 66.667 4.18 0.00 44.03 6.46
1241 1673 3.622455 GCTAGCCATAACTTGAACAGGGT 60.622 47.826 2.29 0.00 0.00 4.34
1242 1674 2.945668 GCTAGCCATAACTTGAACAGGG 59.054 50.000 2.29 0.00 0.00 4.45
1246 1678 5.294552 CAGGTAAGCTAGCCATAACTTGAAC 59.705 44.000 12.13 0.00 0.00 3.18
1274 1719 8.818141 TGAACTTTCTTATCACTAGTTCTGTG 57.182 34.615 12.71 0.00 43.07 3.66
1316 1768 3.319137 TCTGCAGCTTTACCAGTACTG 57.681 47.619 16.34 16.34 0.00 2.74
1368 1820 5.361857 CCAACTCTAGCCCATTGAATTGAAT 59.638 40.000 0.00 0.00 0.00 2.57
1369 1821 4.706476 CCAACTCTAGCCCATTGAATTGAA 59.294 41.667 0.00 0.00 0.00 2.69
1370 1822 4.272489 CCAACTCTAGCCCATTGAATTGA 58.728 43.478 0.00 0.00 0.00 2.57
1371 1823 3.181483 GCCAACTCTAGCCCATTGAATTG 60.181 47.826 0.00 0.00 0.00 2.32
1372 1824 3.026694 GCCAACTCTAGCCCATTGAATT 58.973 45.455 0.00 0.00 0.00 2.17
1408 1860 2.037902 TCACCGTACCAAATTGCTCTGA 59.962 45.455 0.00 0.00 0.00 3.27
1456 1908 4.106197 CAGGACAGACAGACGCTTATTAC 58.894 47.826 0.00 0.00 0.00 1.89
1470 1922 2.644676 CACTCGAGGTATCAGGACAGA 58.355 52.381 18.41 0.00 0.00 3.41
1473 1925 0.386113 GGCACTCGAGGTATCAGGAC 59.614 60.000 18.41 0.00 0.00 3.85
1474 1926 0.033503 TGGCACTCGAGGTATCAGGA 60.034 55.000 18.41 0.00 0.00 3.86
1475 1927 1.043816 ATGGCACTCGAGGTATCAGG 58.956 55.000 18.41 0.00 0.00 3.86
1476 1928 1.410517 ACATGGCACTCGAGGTATCAG 59.589 52.381 18.41 5.04 0.00 2.90
1477 1929 1.136891 CACATGGCACTCGAGGTATCA 59.863 52.381 18.41 9.68 0.00 2.15
1478 1930 1.858091 CACATGGCACTCGAGGTATC 58.142 55.000 18.41 3.98 0.00 2.24
1503 1955 7.566760 ACTACTAGATCATCTGAGTTGTGAG 57.433 40.000 0.00 0.00 0.00 3.51
1507 1959 7.744087 AGCTACTACTAGATCATCTGAGTTG 57.256 40.000 0.00 1.01 0.00 3.16
1541 1993 4.955925 TTGATTGTTACTATTGCGGTGG 57.044 40.909 0.00 0.00 0.00 4.61
1559 2011 5.671577 GCAAATCGCATGCAAATCAAATTGA 60.672 36.000 19.57 0.00 43.29 2.57
1560 2012 4.494056 GCAAATCGCATGCAAATCAAATTG 59.506 37.500 19.57 11.92 43.29 2.32
1864 2316 1.135333 GAGAGGCGGTAGGAGAACTTG 59.865 57.143 0.00 0.00 0.00 3.16
1867 2319 1.393487 GGGAGAGGCGGTAGGAGAAC 61.393 65.000 0.00 0.00 0.00 3.01
1969 2421 4.369182 AGTTACCAGTTGTGAAGTCGAAG 58.631 43.478 0.00 0.00 0.00 3.79
2013 2465 5.034554 TCGAGCTTGCAACTAAGAAATTG 57.965 39.130 0.00 0.00 0.00 2.32
2023 2475 4.404507 TCAACTTTATCGAGCTTGCAAC 57.595 40.909 0.00 0.00 0.00 4.17
2025 2477 4.252878 TGATCAACTTTATCGAGCTTGCA 58.747 39.130 0.00 0.00 0.00 4.08
2137 2600 4.277672 GCATGATGTTGATCTGGCAACTAT 59.722 41.667 0.00 0.00 46.31 2.12
2138 2601 3.628942 GCATGATGTTGATCTGGCAACTA 59.371 43.478 0.00 0.00 46.31 2.24
2139 2602 2.426024 GCATGATGTTGATCTGGCAACT 59.574 45.455 0.00 0.00 46.31 3.16
2159 2622 0.739813 AAGGCATTCTGTCGTACGGC 60.740 55.000 14.12 14.12 0.00 5.68
2217 2680 3.499048 CAACACGTACGCTGTAAGATCT 58.501 45.455 16.72 0.00 34.07 2.75
2227 2690 2.812178 ATCGGCCAACACGTACGC 60.812 61.111 16.72 0.00 0.00 4.42
2550 3085 3.329386 TGAAAGCATAGCAGTGAGTGAC 58.671 45.455 0.00 0.00 0.00 3.67
2570 3112 2.099756 TCGAGACATACACCTGAGCATG 59.900 50.000 0.00 0.00 0.00 4.06
2577 3119 4.533815 TCTACCATTCGAGACATACACCT 58.466 43.478 0.00 0.00 0.00 4.00
2582 3124 7.582667 TTCAGAATCTACCATTCGAGACATA 57.417 36.000 0.00 0.00 33.51 2.29
2589 3131 6.481134 CACAACATTCAGAATCTACCATTCG 58.519 40.000 0.00 0.00 33.51 3.34
2639 3182 2.618045 CGTGTTGGGCCTTAGGAAGAAT 60.618 50.000 0.69 0.00 0.00 2.40
2648 3191 2.430367 GAGTCCGTGTTGGGCCTT 59.570 61.111 4.53 0.00 46.71 4.35
2888 3431 1.285950 CCGTCGTGACAGAGCTCAA 59.714 57.895 17.77 0.00 0.00 3.02
2911 3458 1.227380 ATCGCCGGATCAACAGAGC 60.227 57.895 5.05 0.00 0.00 4.09
2968 3516 6.544928 ACCAAAAACAGACCAGAAAAGAAT 57.455 33.333 0.00 0.00 0.00 2.40
3003 3567 9.695526 CAGTCATCAGGATTTCACAAAAATAAA 57.304 29.630 0.00 0.00 0.00 1.40
3006 3570 7.528996 TCAGTCATCAGGATTTCACAAAAAT 57.471 32.000 0.00 0.00 0.00 1.82
3015 3579 8.844244 GCACTTATATTTCAGTCATCAGGATTT 58.156 33.333 0.00 0.00 0.00 2.17
3016 3580 7.994911 TGCACTTATATTTCAGTCATCAGGATT 59.005 33.333 0.00 0.00 0.00 3.01
3018 3582 6.888105 TGCACTTATATTTCAGTCATCAGGA 58.112 36.000 0.00 0.00 0.00 3.86
3019 3583 6.765036 ACTGCACTTATATTTCAGTCATCAGG 59.235 38.462 0.00 0.00 33.16 3.86
3041 3605 2.484417 CCATGCTTAGCAGGACCTACTG 60.484 54.545 20.85 6.81 43.36 2.74
3047 3611 1.740025 GTGAACCATGCTTAGCAGGAC 59.260 52.381 20.85 15.43 43.36 3.85
3169 3733 3.559242 CGGTTTGTGCCACAATTTTTCAT 59.441 39.130 11.67 0.00 38.00 2.57
3170 3734 2.932614 CGGTTTGTGCCACAATTTTTCA 59.067 40.909 11.67 0.00 38.00 2.69
3171 3735 2.286125 GCGGTTTGTGCCACAATTTTTC 60.286 45.455 11.67 0.67 38.00 2.29
3172 3736 1.668237 GCGGTTTGTGCCACAATTTTT 59.332 42.857 11.67 0.00 38.00 1.94
3173 3737 1.294857 GCGGTTTGTGCCACAATTTT 58.705 45.000 11.67 0.00 38.00 1.82
3174 3738 0.176680 TGCGGTTTGTGCCACAATTT 59.823 45.000 11.67 0.00 38.00 1.82
3175 3739 0.249405 CTGCGGTTTGTGCCACAATT 60.249 50.000 11.67 0.00 38.00 2.32
3176 3740 1.363443 CTGCGGTTTGTGCCACAAT 59.637 52.632 11.67 0.00 38.00 2.71
3177 3741 2.780094 CCTGCGGTTTGTGCCACAA 61.780 57.895 6.08 6.08 36.11 3.33
3178 3742 3.215568 CCTGCGGTTTGTGCCACA 61.216 61.111 0.00 0.00 0.00 4.17
3179 3743 4.645921 GCCTGCGGTTTGTGCCAC 62.646 66.667 0.00 0.00 0.00 5.01
3180 3744 4.892965 AGCCTGCGGTTTGTGCCA 62.893 61.111 0.00 0.00 0.00 4.92
3181 3745 4.347453 CAGCCTGCGGTTTGTGCC 62.347 66.667 0.00 0.00 0.00 5.01
3182 3746 4.347453 CCAGCCTGCGGTTTGTGC 62.347 66.667 0.00 0.00 0.00 4.57
3183 3747 3.673484 CCCAGCCTGCGGTTTGTG 61.673 66.667 0.00 0.00 0.00 3.33
3186 3750 4.684134 ATGCCCAGCCTGCGGTTT 62.684 61.111 0.00 0.00 0.00 3.27
3187 3751 4.684134 AATGCCCAGCCTGCGGTT 62.684 61.111 0.00 0.00 0.00 4.44
3191 3755 2.734948 TTTTGCAATGCCCAGCCTGC 62.735 55.000 1.53 4.33 37.06 4.85
3192 3756 0.035820 ATTTTGCAATGCCCAGCCTG 60.036 50.000 1.53 0.00 0.00 4.85
3193 3757 0.251073 GATTTTGCAATGCCCAGCCT 59.749 50.000 1.53 0.00 0.00 4.58
3194 3758 0.745486 GGATTTTGCAATGCCCAGCC 60.745 55.000 1.53 0.00 0.00 4.85
3195 3759 0.036199 TGGATTTTGCAATGCCCAGC 60.036 50.000 1.53 0.00 29.66 4.85
3196 3760 2.078392 GTTGGATTTTGCAATGCCCAG 58.922 47.619 1.53 0.00 28.47 4.45
3197 3761 1.271271 GGTTGGATTTTGCAATGCCCA 60.271 47.619 1.53 5.00 28.47 5.36
3198 3762 1.003464 AGGTTGGATTTTGCAATGCCC 59.997 47.619 1.53 2.12 28.47 5.36
3199 3763 2.078392 CAGGTTGGATTTTGCAATGCC 58.922 47.619 1.53 2.71 28.47 4.40
3200 3764 3.042871 TCAGGTTGGATTTTGCAATGC 57.957 42.857 0.00 0.00 28.47 3.56
3201 3765 6.563222 ATTTTCAGGTTGGATTTTGCAATG 57.437 33.333 0.00 0.00 28.47 2.82
3202 3766 6.771749 TGAATTTTCAGGTTGGATTTTGCAAT 59.228 30.769 0.00 0.00 29.24 3.56
3203 3767 6.118170 TGAATTTTCAGGTTGGATTTTGCAA 58.882 32.000 0.00 0.00 32.50 4.08
3204 3768 5.678583 TGAATTTTCAGGTTGGATTTTGCA 58.321 33.333 0.00 0.00 32.50 4.08
3205 3769 6.293571 CCTTGAATTTTCAGGTTGGATTTTGC 60.294 38.462 2.33 0.00 38.61 3.68
3206 3770 6.293571 GCCTTGAATTTTCAGGTTGGATTTTG 60.294 38.462 2.33 0.00 38.61 2.44
3207 3771 5.764686 GCCTTGAATTTTCAGGTTGGATTTT 59.235 36.000 2.33 0.00 38.61 1.82
3208 3772 5.072193 AGCCTTGAATTTTCAGGTTGGATTT 59.928 36.000 2.33 0.00 38.61 2.17
3209 3773 4.594491 AGCCTTGAATTTTCAGGTTGGATT 59.406 37.500 2.33 0.00 38.61 3.01
3210 3774 4.162651 AGCCTTGAATTTTCAGGTTGGAT 58.837 39.130 2.33 0.00 38.61 3.41
3211 3775 3.573967 GAGCCTTGAATTTTCAGGTTGGA 59.426 43.478 2.33 0.00 38.61 3.53
3212 3776 3.306294 GGAGCCTTGAATTTTCAGGTTGG 60.306 47.826 2.33 2.05 38.61 3.77
3213 3777 3.321682 TGGAGCCTTGAATTTTCAGGTTG 59.678 43.478 2.33 0.00 38.61 3.77
3214 3778 3.321968 GTGGAGCCTTGAATTTTCAGGTT 59.678 43.478 2.33 1.23 38.61 3.50
3215 3779 2.893489 GTGGAGCCTTGAATTTTCAGGT 59.107 45.455 2.33 0.00 38.61 4.00
3216 3780 2.232208 GGTGGAGCCTTGAATTTTCAGG 59.768 50.000 0.00 0.00 38.61 3.86
3217 3781 2.232208 GGGTGGAGCCTTGAATTTTCAG 59.768 50.000 0.00 0.00 38.61 3.02
3218 3782 2.158325 AGGGTGGAGCCTTGAATTTTCA 60.158 45.455 0.00 0.00 37.43 2.69
3219 3783 2.232208 CAGGGTGGAGCCTTGAATTTTC 59.768 50.000 0.00 0.00 46.27 2.29
3220 3784 2.250924 CAGGGTGGAGCCTTGAATTTT 58.749 47.619 0.00 0.00 46.27 1.82
3221 3785 1.550869 CCAGGGTGGAGCCTTGAATTT 60.551 52.381 0.00 0.00 46.27 1.82
3222 3786 0.040204 CCAGGGTGGAGCCTTGAATT 59.960 55.000 0.00 0.00 46.27 2.17
3223 3787 1.693640 CCAGGGTGGAGCCTTGAAT 59.306 57.895 0.00 0.00 46.27 2.57
3224 3788 2.538141 CCCAGGGTGGAGCCTTGAA 61.538 63.158 0.00 0.00 46.27 2.69
3225 3789 2.935481 CCCAGGGTGGAGCCTTGA 60.935 66.667 0.00 0.00 46.27 3.02
3226 3790 4.748144 GCCCAGGGTGGAGCCTTG 62.748 72.222 7.55 0.00 40.96 3.61
3229 3793 4.748144 CTTGCCCAGGGTGGAGCC 62.748 72.222 7.55 0.00 40.96 4.70
3231 3795 4.748144 GGCTTGCCCAGGGTGGAG 62.748 72.222 7.55 3.95 40.96 3.86
3246 3810 4.381411 AGTATTATTTTCTCGCCTCTGGC 58.619 43.478 0.00 0.00 46.75 4.85
3247 3811 4.991687 GGAGTATTATTTTCTCGCCTCTGG 59.008 45.833 0.00 0.00 0.00 3.86
3248 3812 4.991687 GGGAGTATTATTTTCTCGCCTCTG 59.008 45.833 0.00 0.00 35.90 3.35
3249 3813 4.902448 AGGGAGTATTATTTTCTCGCCTCT 59.098 41.667 0.00 0.00 40.42 3.69
3250 3814 5.011227 AGAGGGAGTATTATTTTCTCGCCTC 59.989 44.000 14.80 14.80 41.01 4.70
3251 3815 4.902448 AGAGGGAGTATTATTTTCTCGCCT 59.098 41.667 0.00 0.00 40.42 5.52
3252 3816 4.991687 CAGAGGGAGTATTATTTTCTCGCC 59.008 45.833 0.00 0.00 40.42 5.54
3253 3817 5.602628 ACAGAGGGAGTATTATTTTCTCGC 58.397 41.667 0.00 0.00 40.04 5.03
3254 3818 7.982354 AGAAACAGAGGGAGTATTATTTTCTCG 59.018 37.037 0.00 0.00 0.00 4.04
3265 3829 9.886132 GACAAATATTTAGAAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
3266 3830 8.606830 AGACAAATATTTAGAAACAGAGGGAGT 58.393 33.333 0.00 0.00 0.00 3.85
3267 3831 9.454859 AAGACAAATATTTAGAAACAGAGGGAG 57.545 33.333 0.00 0.00 0.00 4.30
3268 3832 9.807921 AAAGACAAATATTTAGAAACAGAGGGA 57.192 29.630 0.00 0.00 0.00 4.20
3287 3851 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
3288 3852 9.130661 TGTCCATTTGAAATCTCTAAAAAGACA 57.869 29.630 0.00 0.00 29.75 3.41
3289 3853 9.965824 TTGTCCATTTGAAATCTCTAAAAAGAC 57.034 29.630 0.00 0.00 0.00 3.01
3290 3854 9.965824 GTTGTCCATTTGAAATCTCTAAAAAGA 57.034 29.630 0.00 0.00 0.00 2.52
3291 3855 9.196552 GGTTGTCCATTTGAAATCTCTAAAAAG 57.803 33.333 0.00 0.00 0.00 2.27
3292 3856 8.700051 TGGTTGTCCATTTGAAATCTCTAAAAA 58.300 29.630 0.00 0.00 39.03 1.94
3293 3857 8.141268 GTGGTTGTCCATTTGAAATCTCTAAAA 58.859 33.333 0.00 0.00 46.20 1.52
3294 3858 7.286546 TGTGGTTGTCCATTTGAAATCTCTAAA 59.713 33.333 0.00 0.00 46.20 1.85
3295 3859 6.775142 TGTGGTTGTCCATTTGAAATCTCTAA 59.225 34.615 0.00 0.00 46.20 2.10
3296 3860 6.303054 TGTGGTTGTCCATTTGAAATCTCTA 58.697 36.000 0.00 0.00 46.20 2.43
3297 3861 5.139727 TGTGGTTGTCCATTTGAAATCTCT 58.860 37.500 0.00 0.00 46.20 3.10
3298 3862 5.452078 TGTGGTTGTCCATTTGAAATCTC 57.548 39.130 0.00 0.00 46.20 2.75
3299 3863 7.364056 CCATATGTGGTTGTCCATTTGAAATCT 60.364 37.037 0.00 0.00 46.20 2.40
3300 3864 6.757947 CCATATGTGGTTGTCCATTTGAAATC 59.242 38.462 0.00 0.00 46.20 2.17
3301 3865 6.440010 TCCATATGTGGTTGTCCATTTGAAAT 59.560 34.615 8.51 0.00 46.20 2.17
3302 3866 5.777223 TCCATATGTGGTTGTCCATTTGAAA 59.223 36.000 8.51 0.00 46.20 2.69
3303 3867 5.328565 TCCATATGTGGTTGTCCATTTGAA 58.671 37.500 8.51 0.00 46.20 2.69
3304 3868 4.928263 TCCATATGTGGTTGTCCATTTGA 58.072 39.130 8.51 0.00 46.20 2.69
3305 3869 5.593968 CATCCATATGTGGTTGTCCATTTG 58.406 41.667 8.51 0.00 46.20 2.32
3306 3870 5.857471 CATCCATATGTGGTTGTCCATTT 57.143 39.130 8.51 0.00 46.20 2.32
3348 3912 6.673316 GCGAAGGAAAATGAGTGAATCTACAC 60.673 42.308 0.00 0.00 40.60 2.90
3349 3913 5.351465 GCGAAGGAAAATGAGTGAATCTACA 59.649 40.000 0.00 0.00 0.00 2.74
3350 3914 5.351465 TGCGAAGGAAAATGAGTGAATCTAC 59.649 40.000 0.00 0.00 0.00 2.59
3351 3915 5.487433 TGCGAAGGAAAATGAGTGAATCTA 58.513 37.500 0.00 0.00 0.00 1.98
3352 3916 4.326826 TGCGAAGGAAAATGAGTGAATCT 58.673 39.130 0.00 0.00 0.00 2.40
3353 3917 4.685169 TGCGAAGGAAAATGAGTGAATC 57.315 40.909 0.00 0.00 0.00 2.52
3354 3918 4.460382 ACATGCGAAGGAAAATGAGTGAAT 59.540 37.500 0.00 0.00 0.00 2.57
3355 3919 3.820467 ACATGCGAAGGAAAATGAGTGAA 59.180 39.130 0.00 0.00 0.00 3.18
3356 3920 3.411446 ACATGCGAAGGAAAATGAGTGA 58.589 40.909 0.00 0.00 0.00 3.41
3357 3921 3.837213 ACATGCGAAGGAAAATGAGTG 57.163 42.857 0.00 0.00 0.00 3.51
3358 3922 5.647658 TGATTACATGCGAAGGAAAATGAGT 59.352 36.000 0.00 0.00 0.00 3.41
3359 3923 5.967674 GTGATTACATGCGAAGGAAAATGAG 59.032 40.000 0.00 0.00 0.00 2.90
3360 3924 5.647658 AGTGATTACATGCGAAGGAAAATGA 59.352 36.000 0.00 0.00 0.00 2.57
3361 3925 5.883661 AGTGATTACATGCGAAGGAAAATG 58.116 37.500 0.00 0.00 0.00 2.32
3362 3926 6.071952 ACAAGTGATTACATGCGAAGGAAAAT 60.072 34.615 0.00 0.00 0.00 1.82
3363 3927 5.240623 ACAAGTGATTACATGCGAAGGAAAA 59.759 36.000 0.00 0.00 0.00 2.29
3364 3928 4.759693 ACAAGTGATTACATGCGAAGGAAA 59.240 37.500 0.00 0.00 0.00 3.13
3365 3929 4.323417 ACAAGTGATTACATGCGAAGGAA 58.677 39.130 0.00 0.00 0.00 3.36
3366 3930 3.937814 ACAAGTGATTACATGCGAAGGA 58.062 40.909 0.00 0.00 0.00 3.36
3367 3931 4.154015 TCAACAAGTGATTACATGCGAAGG 59.846 41.667 0.00 0.00 0.00 3.46
3368 3932 5.281693 TCAACAAGTGATTACATGCGAAG 57.718 39.130 0.00 0.00 0.00 3.79
3369 3933 5.681337 TTCAACAAGTGATTACATGCGAA 57.319 34.783 0.00 0.00 35.70 4.70
3370 3934 5.681337 TTTCAACAAGTGATTACATGCGA 57.319 34.783 0.00 0.00 35.70 5.10
3371 3935 6.317088 AGATTTCAACAAGTGATTACATGCG 58.683 36.000 0.00 0.00 35.70 4.73
3372 3936 7.533426 AGAGATTTCAACAAGTGATTACATGC 58.467 34.615 0.00 0.00 35.70 4.06
3375 3939 9.996554 TTCTAGAGATTTCAACAAGTGATTACA 57.003 29.630 0.00 0.00 35.70 2.41
3378 3942 9.784531 TCTTTCTAGAGATTTCAACAAGTGATT 57.215 29.630 0.00 0.00 35.70 2.57
3379 3943 9.213799 GTCTTTCTAGAGATTTCAACAAGTGAT 57.786 33.333 0.00 0.00 35.70 3.06
3380 3944 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
3381 3945 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
3382 3946 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
3402 3966 9.981460 ACTTCCTTCATTCCTAAATATTTGTCT 57.019 29.630 11.05 0.00 0.00 3.41
3411 3975 9.862149 AAAAGAAGTACTTCCTTCATTCCTAAA 57.138 29.630 28.05 0.00 42.68 1.85
3412 3976 9.503399 GAAAAGAAGTACTTCCTTCATTCCTAA 57.497 33.333 28.05 0.00 42.68 2.69
3413 3977 8.656806 TGAAAAGAAGTACTTCCTTCATTCCTA 58.343 33.333 29.49 16.43 42.68 2.94
3414 3978 7.518188 TGAAAAGAAGTACTTCCTTCATTCCT 58.482 34.615 29.49 13.43 42.68 3.36
3415 3979 7.745620 TGAAAAGAAGTACTTCCTTCATTCC 57.254 36.000 29.49 16.39 42.68 3.01
3445 4009 9.578576 TCCTAAATTGAGCATAGCTTCATTATT 57.421 29.630 0.00 0.00 39.88 1.40
3446 4010 9.578576 TTCCTAAATTGAGCATAGCTTCATTAT 57.421 29.630 0.00 0.00 39.88 1.28
3447 4011 8.978874 TTCCTAAATTGAGCATAGCTTCATTA 57.021 30.769 0.00 0.00 39.88 1.90
3448 4012 7.886629 TTCCTAAATTGAGCATAGCTTCATT 57.113 32.000 0.00 0.00 39.88 2.57
3449 4013 7.886629 TTTCCTAAATTGAGCATAGCTTCAT 57.113 32.000 0.00 0.00 39.88 2.57
3450 4014 7.701539 TTTTCCTAAATTGAGCATAGCTTCA 57.298 32.000 0.00 0.00 39.88 3.02
3473 4037 9.646522 AGCCCAAAGTGAGTTATTATCATTATT 57.353 29.630 0.00 0.00 0.00 1.40
3474 4038 9.646522 AAGCCCAAAGTGAGTTATTATCATTAT 57.353 29.630 0.00 0.00 0.00 1.28
3475 4039 9.474313 AAAGCCCAAAGTGAGTTATTATCATTA 57.526 29.630 0.00 0.00 0.00 1.90
3476 4040 7.961326 AAGCCCAAAGTGAGTTATTATCATT 57.039 32.000 0.00 0.00 0.00 2.57
3477 4041 7.961326 AAAGCCCAAAGTGAGTTATTATCAT 57.039 32.000 0.00 0.00 0.00 2.45
3478 4042 7.361713 CGAAAAGCCCAAAGTGAGTTATTATCA 60.362 37.037 0.00 0.00 0.00 2.15
3479 4043 6.967199 CGAAAAGCCCAAAGTGAGTTATTATC 59.033 38.462 0.00 0.00 0.00 1.75
3480 4044 6.127730 CCGAAAAGCCCAAAGTGAGTTATTAT 60.128 38.462 0.00 0.00 0.00 1.28
3481 4045 5.182380 CCGAAAAGCCCAAAGTGAGTTATTA 59.818 40.000 0.00 0.00 0.00 0.98
3482 4046 4.022329 CCGAAAAGCCCAAAGTGAGTTATT 60.022 41.667 0.00 0.00 0.00 1.40
3483 4047 3.506067 CCGAAAAGCCCAAAGTGAGTTAT 59.494 43.478 0.00 0.00 0.00 1.89
3484 4048 2.882137 CCGAAAAGCCCAAAGTGAGTTA 59.118 45.455 0.00 0.00 0.00 2.24
3485 4049 1.681264 CCGAAAAGCCCAAAGTGAGTT 59.319 47.619 0.00 0.00 0.00 3.01
3486 4050 1.318576 CCGAAAAGCCCAAAGTGAGT 58.681 50.000 0.00 0.00 0.00 3.41
3487 4051 0.039165 GCCGAAAAGCCCAAAGTGAG 60.039 55.000 0.00 0.00 0.00 3.51
3488 4052 0.467290 AGCCGAAAAGCCCAAAGTGA 60.467 50.000 0.00 0.00 0.00 3.41
3489 4053 0.039165 GAGCCGAAAAGCCCAAAGTG 60.039 55.000 0.00 0.00 0.00 3.16
3490 4054 1.515521 CGAGCCGAAAAGCCCAAAGT 61.516 55.000 0.00 0.00 0.00 2.66
3491 4055 1.210155 CGAGCCGAAAAGCCCAAAG 59.790 57.895 0.00 0.00 0.00 2.77
3492 4056 2.265182 CCGAGCCGAAAAGCCCAAA 61.265 57.895 0.00 0.00 0.00 3.28
3493 4057 2.671619 CCGAGCCGAAAAGCCCAA 60.672 61.111 0.00 0.00 0.00 4.12
3494 4058 2.969300 AAACCGAGCCGAAAAGCCCA 62.969 55.000 0.00 0.00 0.00 5.36
3495 4059 1.802337 AAAACCGAGCCGAAAAGCCC 61.802 55.000 0.00 0.00 0.00 5.19
3496 4060 0.876399 TAAAACCGAGCCGAAAAGCC 59.124 50.000 0.00 0.00 0.00 4.35
3497 4061 2.031420 ACTTAAAACCGAGCCGAAAAGC 60.031 45.455 0.00 0.00 0.00 3.51
3498 4062 3.551551 CACTTAAAACCGAGCCGAAAAG 58.448 45.455 0.00 0.00 0.00 2.27
3499 4063 2.291190 CCACTTAAAACCGAGCCGAAAA 59.709 45.455 0.00 0.00 0.00 2.29
3500 4064 1.874872 CCACTTAAAACCGAGCCGAAA 59.125 47.619 0.00 0.00 0.00 3.46
3501 4065 1.515081 CCACTTAAAACCGAGCCGAA 58.485 50.000 0.00 0.00 0.00 4.30
3502 4066 0.952010 GCCACTTAAAACCGAGCCGA 60.952 55.000 0.00 0.00 0.00 5.54
3503 4067 1.231958 TGCCACTTAAAACCGAGCCG 61.232 55.000 0.00 0.00 0.00 5.52
3504 4068 0.240145 GTGCCACTTAAAACCGAGCC 59.760 55.000 0.00 0.00 0.00 4.70
3505 4069 0.240145 GGTGCCACTTAAAACCGAGC 59.760 55.000 0.00 0.00 0.00 5.03
3506 4070 1.804748 GAGGTGCCACTTAAAACCGAG 59.195 52.381 0.00 0.00 37.78 4.63
3507 4071 1.874739 CGAGGTGCCACTTAAAACCGA 60.875 52.381 0.00 0.00 37.78 4.69
3508 4072 0.515564 CGAGGTGCCACTTAAAACCG 59.484 55.000 0.00 0.00 37.78 4.44
3509 4073 0.879090 CCGAGGTGCCACTTAAAACC 59.121 55.000 0.00 0.00 0.00 3.27
3510 4074 0.240145 GCCGAGGTGCCACTTAAAAC 59.760 55.000 0.00 0.00 0.00 2.43
3511 4075 2.636299 GCCGAGGTGCCACTTAAAA 58.364 52.632 0.00 0.00 0.00 1.52
3512 4076 4.390048 GCCGAGGTGCCACTTAAA 57.610 55.556 0.00 0.00 0.00 1.52
3520 4084 2.203070 CATAGTGGGCCGAGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
3521 4085 2.505982 CCATAGTGGGCCGAGGTG 59.494 66.667 0.00 0.00 32.67 4.00
3529 4093 1.818674 GACACAAAAGGCCATAGTGGG 59.181 52.381 17.92 8.95 38.19 4.61
3530 4094 1.468520 CGACACAAAAGGCCATAGTGG 59.531 52.381 17.92 2.01 41.55 4.00
3531 4095 1.468520 CCGACACAAAAGGCCATAGTG 59.531 52.381 5.01 10.80 36.34 2.74
3532 4096 1.613255 CCCGACACAAAAGGCCATAGT 60.613 52.381 5.01 0.00 0.00 2.12
3533 4097 1.094785 CCCGACACAAAAGGCCATAG 58.905 55.000 5.01 0.00 0.00 2.23
3534 4098 0.693622 TCCCGACACAAAAGGCCATA 59.306 50.000 5.01 0.00 0.00 2.74
3535 4099 0.039618 ATCCCGACACAAAAGGCCAT 59.960 50.000 5.01 0.00 0.00 4.40
3536 4100 0.893270 CATCCCGACACAAAAGGCCA 60.893 55.000 5.01 0.00 0.00 5.36
3537 4101 0.893727 ACATCCCGACACAAAAGGCC 60.894 55.000 0.00 0.00 0.00 5.19
3538 4102 0.521735 GACATCCCGACACAAAAGGC 59.478 55.000 0.00 0.00 0.00 4.35
3539 4103 1.165270 GGACATCCCGACACAAAAGG 58.835 55.000 0.00 0.00 0.00 3.11
3540 4104 2.185004 AGGACATCCCGACACAAAAG 57.815 50.000 0.00 0.00 40.87 2.27
3541 4105 3.670625 CTTAGGACATCCCGACACAAAA 58.329 45.455 0.00 0.00 40.87 2.44
3542 4106 2.614481 GCTTAGGACATCCCGACACAAA 60.614 50.000 0.00 0.00 40.87 2.83
3543 4107 1.066430 GCTTAGGACATCCCGACACAA 60.066 52.381 0.00 0.00 40.87 3.33
3544 4108 0.535335 GCTTAGGACATCCCGACACA 59.465 55.000 0.00 0.00 40.87 3.72
3545 4109 0.179081 GGCTTAGGACATCCCGACAC 60.179 60.000 0.00 0.00 40.87 3.67
3546 4110 1.335132 GGGCTTAGGACATCCCGACA 61.335 60.000 0.00 0.00 40.87 4.35
3547 4111 1.335132 TGGGCTTAGGACATCCCGAC 61.335 60.000 0.00 0.00 41.65 4.79
3548 4112 1.002403 TGGGCTTAGGACATCCCGA 59.998 57.895 0.00 0.00 41.65 5.14
3549 4113 1.048724 TCTGGGCTTAGGACATCCCG 61.049 60.000 0.00 0.00 41.65 5.14
3550 4114 1.439543 ATCTGGGCTTAGGACATCCC 58.560 55.000 0.00 0.00 39.22 3.85
3551 4115 3.243724 ACTATCTGGGCTTAGGACATCC 58.756 50.000 0.00 0.00 0.00 3.51
3552 4116 3.898123 TGACTATCTGGGCTTAGGACATC 59.102 47.826 0.00 0.00 0.00 3.06
3553 4117 3.928754 TGACTATCTGGGCTTAGGACAT 58.071 45.455 0.00 0.00 0.00 3.06
3554 4118 3.398318 TGACTATCTGGGCTTAGGACA 57.602 47.619 0.00 0.00 0.00 4.02
3555 4119 4.965200 ATTGACTATCTGGGCTTAGGAC 57.035 45.455 0.00 0.00 0.00 3.85
3556 4120 5.716979 AGTATTGACTATCTGGGCTTAGGA 58.283 41.667 0.00 0.00 32.65 2.94
3557 4121 6.071278 GGTAGTATTGACTATCTGGGCTTAGG 60.071 46.154 0.00 0.00 40.32 2.69
3558 4122 6.071278 GGGTAGTATTGACTATCTGGGCTTAG 60.071 46.154 0.00 0.00 40.32 2.18
3559 4123 5.778750 GGGTAGTATTGACTATCTGGGCTTA 59.221 44.000 0.00 0.00 40.32 3.09
3560 4124 4.593634 GGGTAGTATTGACTATCTGGGCTT 59.406 45.833 0.00 0.00 40.32 4.35
3561 4125 4.161102 GGGTAGTATTGACTATCTGGGCT 58.839 47.826 0.00 0.00 40.32 5.19
3562 4126 3.261137 GGGGTAGTATTGACTATCTGGGC 59.739 52.174 0.00 0.00 40.32 5.36
3563 4127 3.838903 GGGGGTAGTATTGACTATCTGGG 59.161 52.174 0.00 0.00 40.32 4.45
3582 4146 2.365293 CCAAAGTTTCAACTCAAGGGGG 59.635 50.000 0.00 0.00 38.57 5.40
3583 4147 2.224042 GCCAAAGTTTCAACTCAAGGGG 60.224 50.000 0.00 0.00 38.57 4.79
3584 4148 2.430332 TGCCAAAGTTTCAACTCAAGGG 59.570 45.455 0.00 0.00 38.57 3.95
3585 4149 3.799281 TGCCAAAGTTTCAACTCAAGG 57.201 42.857 0.00 0.00 38.57 3.61
3586 4150 4.997565 TCTTGCCAAAGTTTCAACTCAAG 58.002 39.130 10.51 10.51 38.57 3.02
3587 4151 5.398603 TTCTTGCCAAAGTTTCAACTCAA 57.601 34.783 0.00 0.00 38.57 3.02
3588 4152 5.184864 TCTTTCTTGCCAAAGTTTCAACTCA 59.815 36.000 0.00 0.00 38.57 3.41
3589 4153 5.650543 TCTTTCTTGCCAAAGTTTCAACTC 58.349 37.500 0.00 0.00 38.57 3.01
3590 4154 5.659440 TCTTTCTTGCCAAAGTTTCAACT 57.341 34.783 0.00 0.00 42.04 3.16
3591 4155 9.860898 ATATATCTTTCTTGCCAAAGTTTCAAC 57.139 29.630 0.00 0.00 35.25 3.18
3592 4156 9.859427 CATATATCTTTCTTGCCAAAGTTTCAA 57.141 29.630 0.00 0.00 35.25 2.69
3593 4157 8.469200 CCATATATCTTTCTTGCCAAAGTTTCA 58.531 33.333 0.00 0.00 35.25 2.69
3594 4158 7.922811 CCCATATATCTTTCTTGCCAAAGTTTC 59.077 37.037 0.00 0.00 35.25 2.78
3595 4159 7.400052 ACCCATATATCTTTCTTGCCAAAGTTT 59.600 33.333 0.00 0.00 35.25 2.66
3596 4160 6.897413 ACCCATATATCTTTCTTGCCAAAGTT 59.103 34.615 0.00 0.00 35.25 2.66
3597 4161 6.435164 ACCCATATATCTTTCTTGCCAAAGT 58.565 36.000 0.00 0.00 35.25 2.66
3598 4162 6.015940 GGACCCATATATCTTTCTTGCCAAAG 60.016 42.308 0.00 0.00 35.06 2.77
3599 4163 5.833131 GGACCCATATATCTTTCTTGCCAAA 59.167 40.000 0.00 0.00 0.00 3.28
3600 4164 5.103728 TGGACCCATATATCTTTCTTGCCAA 60.104 40.000 0.00 0.00 0.00 4.52
3601 4165 4.415179 TGGACCCATATATCTTTCTTGCCA 59.585 41.667 0.00 0.00 0.00 4.92
3602 4166 4.985538 TGGACCCATATATCTTTCTTGCC 58.014 43.478 0.00 0.00 0.00 4.52
3603 4167 6.959639 TTTGGACCCATATATCTTTCTTGC 57.040 37.500 0.00 0.00 0.00 4.01
3604 4168 9.799106 ACTATTTGGACCCATATATCTTTCTTG 57.201 33.333 0.76 0.00 0.00 3.02
3637 4201 9.496873 CCGTATCAAAGTGTGGGATTTATAATA 57.503 33.333 0.00 0.00 0.00 0.98
3638 4202 7.447238 CCCGTATCAAAGTGTGGGATTTATAAT 59.553 37.037 0.00 0.00 39.03 1.28
3639 4203 6.768861 CCCGTATCAAAGTGTGGGATTTATAA 59.231 38.462 0.00 0.00 39.03 0.98
3640 4204 6.126710 ACCCGTATCAAAGTGTGGGATTTATA 60.127 38.462 1.41 0.00 39.03 0.98
3641 4205 5.130350 CCCGTATCAAAGTGTGGGATTTAT 58.870 41.667 0.00 0.00 39.03 1.40
3642 4206 4.019141 ACCCGTATCAAAGTGTGGGATTTA 60.019 41.667 1.41 0.00 39.03 1.40
3643 4207 3.245122 ACCCGTATCAAAGTGTGGGATTT 60.245 43.478 1.41 0.00 39.03 2.17
3644 4208 2.307686 ACCCGTATCAAAGTGTGGGATT 59.692 45.455 1.41 0.00 39.03 3.01
3645 4209 1.913419 ACCCGTATCAAAGTGTGGGAT 59.087 47.619 1.41 0.00 39.03 3.85
3646 4210 1.354101 ACCCGTATCAAAGTGTGGGA 58.646 50.000 1.41 0.00 39.03 4.37
3647 4211 3.553828 ATACCCGTATCAAAGTGTGGG 57.446 47.619 0.00 0.00 42.50 4.61
3648 4212 7.562454 AATAAATACCCGTATCAAAGTGTGG 57.438 36.000 0.00 0.00 0.00 4.17
3667 4231 9.588774 GACGCGCTGAAAACATATAATAATAAA 57.411 29.630 5.73 0.00 0.00 1.40
3668 4232 8.984764 AGACGCGCTGAAAACATATAATAATAA 58.015 29.630 5.73 0.00 0.00 1.40
3669 4233 8.528917 AGACGCGCTGAAAACATATAATAATA 57.471 30.769 5.73 0.00 0.00 0.98
3670 4234 7.421530 AGACGCGCTGAAAACATATAATAAT 57.578 32.000 5.73 0.00 0.00 1.28
3671 4235 6.838198 AGACGCGCTGAAAACATATAATAA 57.162 33.333 5.73 0.00 0.00 1.40
3672 4236 8.528917 AATAGACGCGCTGAAAACATATAATA 57.471 30.769 5.73 0.00 0.00 0.98
3673 4237 7.421530 AATAGACGCGCTGAAAACATATAAT 57.578 32.000 5.73 0.00 0.00 1.28
3674 4238 6.838198 AATAGACGCGCTGAAAACATATAA 57.162 33.333 5.73 0.00 0.00 0.98
3675 4239 6.838198 AAATAGACGCGCTGAAAACATATA 57.162 33.333 5.73 0.00 0.00 0.86
3676 4240 5.734855 AAATAGACGCGCTGAAAACATAT 57.265 34.783 5.73 0.00 0.00 1.78
3677 4241 5.120986 TCAAAATAGACGCGCTGAAAACATA 59.879 36.000 5.73 0.00 0.00 2.29
3678 4242 4.083537 TCAAAATAGACGCGCTGAAAACAT 60.084 37.500 5.73 0.00 0.00 2.71
3679 4243 3.248841 TCAAAATAGACGCGCTGAAAACA 59.751 39.130 5.73 0.00 0.00 2.83
3680 4244 3.805823 TCAAAATAGACGCGCTGAAAAC 58.194 40.909 5.73 0.00 0.00 2.43
3681 4245 4.475763 TTCAAAATAGACGCGCTGAAAA 57.524 36.364 5.73 0.00 0.00 2.29
3682 4246 4.678509 ATTCAAAATAGACGCGCTGAAA 57.321 36.364 5.73 0.00 0.00 2.69
3683 4247 4.678509 AATTCAAAATAGACGCGCTGAA 57.321 36.364 5.73 6.36 0.00 3.02
3684 4248 5.984233 ATAATTCAAAATAGACGCGCTGA 57.016 34.783 5.73 0.00 0.00 4.26
3685 4249 7.638295 TGTAAATAATTCAAAATAGACGCGCTG 59.362 33.333 5.73 1.02 0.00 5.18
3686 4250 7.690228 TGTAAATAATTCAAAATAGACGCGCT 58.310 30.769 5.73 7.21 0.00 5.92
3687 4251 7.886191 TGTAAATAATTCAAAATAGACGCGC 57.114 32.000 5.73 0.00 0.00 6.86
3726 4290 9.862371 TTGAAGTTTGCAACTCTATGTTAAAAA 57.138 25.926 0.00 0.00 41.91 1.94
3727 4291 9.296400 GTTGAAGTTTGCAACTCTATGTTAAAA 57.704 29.630 0.00 0.00 41.91 1.52
3728 4292 8.850454 GTTGAAGTTTGCAACTCTATGTTAAA 57.150 30.769 0.00 0.00 41.91 1.52
3748 4312 8.396390 TGTTTACGCACTTTAACAATAGTTGAA 58.604 29.630 0.00 0.00 38.69 2.69
3749 4313 7.917597 TGTTTACGCACTTTAACAATAGTTGA 58.082 30.769 0.00 0.00 38.69 3.18
3750 4314 8.549777 TTGTTTACGCACTTTAACAATAGTTG 57.450 30.769 0.00 0.00 38.69 3.16
3751 4315 9.738832 ATTTGTTTACGCACTTTAACAATAGTT 57.261 25.926 0.00 0.00 39.42 2.24
3752 4316 9.738832 AATTTGTTTACGCACTTTAACAATAGT 57.261 25.926 0.00 0.00 39.42 2.12
3789 4353 9.941325 TGTGCCAGAAAATGAATATAACAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
3790 4354 9.421806 CTGTGCCAGAAAATGAATATAACAAAA 57.578 29.630 0.00 0.00 32.44 2.44
3791 4355 8.584157 ACTGTGCCAGAAAATGAATATAACAAA 58.416 29.630 8.91 0.00 35.18 2.83
3792 4356 8.121305 ACTGTGCCAGAAAATGAATATAACAA 57.879 30.769 8.91 0.00 35.18 2.83
3793 4357 7.701539 ACTGTGCCAGAAAATGAATATAACA 57.298 32.000 8.91 0.00 35.18 2.41
3796 4360 9.679661 TCTTAACTGTGCCAGAAAATGAATATA 57.320 29.630 8.91 0.00 35.18 0.86
3797 4361 8.579850 TCTTAACTGTGCCAGAAAATGAATAT 57.420 30.769 8.91 0.00 35.18 1.28
3798 4362 7.994425 TCTTAACTGTGCCAGAAAATGAATA 57.006 32.000 8.91 0.00 35.18 1.75
3799 4363 6.899393 TCTTAACTGTGCCAGAAAATGAAT 57.101 33.333 8.91 0.00 35.18 2.57
3800 4364 6.489700 TCATCTTAACTGTGCCAGAAAATGAA 59.510 34.615 8.91 0.00 35.18 2.57
3801 4365 6.003326 TCATCTTAACTGTGCCAGAAAATGA 58.997 36.000 8.91 7.41 35.18 2.57
3802 4366 6.258230 TCATCTTAACTGTGCCAGAAAATG 57.742 37.500 8.91 5.74 35.18 2.32
3803 4367 7.472334 AATCATCTTAACTGTGCCAGAAAAT 57.528 32.000 8.91 0.00 35.18 1.82
3804 4368 6.899393 AATCATCTTAACTGTGCCAGAAAA 57.101 33.333 8.91 2.78 35.18 2.29
3805 4369 6.489700 TGAAATCATCTTAACTGTGCCAGAAA 59.510 34.615 8.91 3.06 35.18 2.52
3806 4370 6.003326 TGAAATCATCTTAACTGTGCCAGAA 58.997 36.000 8.91 0.00 35.18 3.02
3807 4371 5.559770 TGAAATCATCTTAACTGTGCCAGA 58.440 37.500 8.91 0.00 35.18 3.86
3808 4372 5.885230 TGAAATCATCTTAACTGTGCCAG 57.115 39.130 1.16 1.16 37.52 4.85
3809 4373 6.350361 CCATTGAAATCATCTTAACTGTGCCA 60.350 38.462 0.00 0.00 0.00 4.92
3810 4374 6.038356 CCATTGAAATCATCTTAACTGTGCC 58.962 40.000 0.00 0.00 0.00 5.01
3811 4375 6.624423 ACCATTGAAATCATCTTAACTGTGC 58.376 36.000 0.00 0.00 0.00 4.57
3812 4376 9.941664 GATACCATTGAAATCATCTTAACTGTG 57.058 33.333 0.00 0.00 0.00 3.66
3813 4377 9.685276 TGATACCATTGAAATCATCTTAACTGT 57.315 29.630 0.00 0.00 0.00 3.55
3823 4387 9.919416 TCCTAAAAGATGATACCATTGAAATCA 57.081 29.630 4.14 4.14 34.35 2.57
3826 4390 8.686334 GCTTCCTAAAAGATGATACCATTGAAA 58.314 33.333 0.00 0.00 32.09 2.69
3827 4391 7.285401 GGCTTCCTAAAAGATGATACCATTGAA 59.715 37.037 0.00 0.00 32.09 2.69
3828 4392 6.772716 GGCTTCCTAAAAGATGATACCATTGA 59.227 38.462 0.00 0.00 32.09 2.57
3829 4393 6.547141 TGGCTTCCTAAAAGATGATACCATTG 59.453 38.462 0.00 0.00 32.09 2.82
3830 4394 6.672593 TGGCTTCCTAAAAGATGATACCATT 58.327 36.000 0.00 0.00 32.09 3.16
3831 4395 6.266131 TGGCTTCCTAAAAGATGATACCAT 57.734 37.500 0.00 0.00 35.29 3.55
3832 4396 5.708736 TGGCTTCCTAAAAGATGATACCA 57.291 39.130 0.00 0.00 0.00 3.25
3833 4397 5.532779 CCTTGGCTTCCTAAAAGATGATACC 59.467 44.000 0.00 0.00 0.00 2.73
3834 4398 5.532779 CCCTTGGCTTCCTAAAAGATGATAC 59.467 44.000 0.00 0.00 0.00 2.24
3835 4399 5.399038 CCCCTTGGCTTCCTAAAAGATGATA 60.399 44.000 0.00 0.00 0.00 2.15
3836 4400 4.540715 CCCTTGGCTTCCTAAAAGATGAT 58.459 43.478 0.00 0.00 0.00 2.45
3837 4401 3.309121 CCCCTTGGCTTCCTAAAAGATGA 60.309 47.826 0.00 0.00 0.00 2.92
3838 4402 3.026694 CCCCTTGGCTTCCTAAAAGATG 58.973 50.000 0.00 0.00 0.00 2.90
3839 4403 2.023984 CCCCCTTGGCTTCCTAAAAGAT 60.024 50.000 0.00 0.00 0.00 2.40
3840 4404 1.357761 CCCCCTTGGCTTCCTAAAAGA 59.642 52.381 0.00 0.00 0.00 2.52
3841 4405 1.852633 CCCCCTTGGCTTCCTAAAAG 58.147 55.000 0.00 0.00 0.00 2.27
3867 4431 1.153842 GGCAATAACAAGCCGTGGC 60.154 57.895 1.67 1.67 41.70 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.