Multiple sequence alignment - TraesCS1A01G384100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G384100 chr1A 100.000 3371 0 0 1 3371 554220754 554224124 0.000000e+00 6226
1 TraesCS1A01G384100 chr1A 81.585 1211 204 14 1129 2333 554526203 554525006 0.000000e+00 983
2 TraesCS1A01G384100 chr1B 93.220 2714 134 28 675 3371 637525472 637522792 0.000000e+00 3947
3 TraesCS1A01G384100 chr1B 92.454 2306 110 31 490 2779 663611934 663609677 0.000000e+00 3236
4 TraesCS1A01G384100 chr1B 84.117 1574 217 17 809 2371 637621587 637623138 0.000000e+00 1491
5 TraesCS1A01G384100 chr1B 85.685 964 132 3 1376 2333 637820242 637819279 0.000000e+00 1011
6 TraesCS1A01G384100 chr1B 81.107 1265 216 15 1077 2333 637825370 637824121 0.000000e+00 990
7 TraesCS1A01G384100 chr1B 78.622 1539 244 61 869 2371 637815812 637817301 0.000000e+00 941
8 TraesCS1A01G384100 chr1B 93.970 597 30 4 2778 3371 663609592 663608999 0.000000e+00 898
9 TraesCS1A01G384100 chr1B 96.281 242 7 2 437 676 637525828 637525587 2.440000e-106 396
10 TraesCS1A01G384100 chr1D 84.542 1572 214 16 809 2371 462487573 462489124 0.000000e+00 1530
11 TraesCS1A01G384100 chr1D 82.038 1364 204 28 987 2333 462719057 462717718 0.000000e+00 1123
12 TraesCS1A01G384100 chr1D 94.513 729 33 2 1600 2322 462396184 462396911 0.000000e+00 1118
13 TraesCS1A01G384100 chr1D 83.798 969 149 5 1372 2333 462730241 462729274 0.000000e+00 913
14 TraesCS1A01G384100 chr1D 89.831 177 18 0 888 1064 462396015 462396191 9.410000e-56 228
15 TraesCS1A01G384100 chr1D 78.988 257 45 6 1001 1248 462736698 462736442 2.080000e-37 167
16 TraesCS1A01G384100 chr1D 86.620 142 13 3 456 594 462487268 462487406 5.830000e-33 152
17 TraesCS1A01G384100 chr1D 95.062 81 4 0 2406 2486 462396918 462396998 9.820000e-26 128
18 TraesCS1A01G384100 chr5A 96.643 417 12 2 16 432 352477616 352478030 0.000000e+00 691
19 TraesCS1A01G384100 chr5A 95.913 416 17 0 17 432 88572393 88572808 0.000000e+00 675
20 TraesCS1A01G384100 chr5A 95.683 417 16 2 16 432 528833303 528832889 0.000000e+00 669
21 TraesCS1A01G384100 chr5A 86.842 152 17 2 647 798 354544076 354544224 2.080000e-37 167
22 TraesCS1A01G384100 chr7A 96.163 417 14 2 16 432 612759502 612759088 0.000000e+00 680
23 TraesCS1A01G384100 chr7A 95.683 417 16 2 16 432 52779247 52779661 0.000000e+00 669
24 TraesCS1A01G384100 chr6A 96.163 417 13 3 16 432 582936682 582937095 0.000000e+00 678
25 TraesCS1A01G384100 chr6A 95.465 419 17 2 16 432 10452929 10453347 0.000000e+00 667
26 TraesCS1A01G384100 chr6A 95.444 417 17 2 16 432 52805684 52805270 0.000000e+00 664
27 TraesCS1A01G384100 chr2A 95.663 415 16 2 18 432 703361886 703361474 0.000000e+00 665
28 TraesCS1A01G384100 chr2A 88.024 167 15 4 656 821 141506470 141506308 3.430000e-45 193
29 TraesCS1A01G384100 chr2D 90.476 147 14 0 651 797 335689863 335689717 9.540000e-46 195
30 TraesCS1A01G384100 chr2D 86.982 169 17 2 648 816 617101054 617101217 5.740000e-43 185
31 TraesCS1A01G384100 chr2B 87.425 167 16 4 656 821 190023043 190022881 1.600000e-43 187
32 TraesCS1A01G384100 chr4B 89.928 139 14 0 654 792 106227407 106227545 2.670000e-41 180
33 TraesCS1A01G384100 chr3D 88.591 149 15 2 651 797 315480420 315480568 2.670000e-41 180
34 TraesCS1A01G384100 chr3B 87.742 155 17 2 644 798 245935451 245935603 2.670000e-41 180
35 TraesCS1A01G384100 chr7D 73.451 339 78 10 2004 2333 97953610 97953945 2.130000e-22 117
36 TraesCS1A01G384100 chr7B 72.143 420 99 13 1926 2333 52616718 52617131 9.890000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G384100 chr1A 554220754 554224124 3370 False 6226.000000 6226 100.000000 1 3371 1 chr1A.!!$F1 3370
1 TraesCS1A01G384100 chr1A 554525006 554526203 1197 True 983.000000 983 81.585000 1129 2333 1 chr1A.!!$R1 1204
2 TraesCS1A01G384100 chr1B 637522792 637525828 3036 True 2171.500000 3947 94.750500 437 3371 2 chr1B.!!$R1 2934
3 TraesCS1A01G384100 chr1B 663608999 663611934 2935 True 2067.000000 3236 93.212000 490 3371 2 chr1B.!!$R3 2881
4 TraesCS1A01G384100 chr1B 637621587 637623138 1551 False 1491.000000 1491 84.117000 809 2371 1 chr1B.!!$F1 1562
5 TraesCS1A01G384100 chr1B 637819279 637825370 6091 True 1000.500000 1011 83.396000 1077 2333 2 chr1B.!!$R2 1256
6 TraesCS1A01G384100 chr1B 637815812 637817301 1489 False 941.000000 941 78.622000 869 2371 1 chr1B.!!$F2 1502
7 TraesCS1A01G384100 chr1D 462717718 462719057 1339 True 1123.000000 1123 82.038000 987 2333 1 chr1D.!!$R1 1346
8 TraesCS1A01G384100 chr1D 462729274 462730241 967 True 913.000000 913 83.798000 1372 2333 1 chr1D.!!$R2 961
9 TraesCS1A01G384100 chr1D 462487268 462489124 1856 False 841.000000 1530 85.581000 456 2371 2 chr1D.!!$F2 1915
10 TraesCS1A01G384100 chr1D 462396015 462396998 983 False 491.333333 1118 93.135333 888 2486 3 chr1D.!!$F1 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 381 0.036671 TCTCTGCTGCTGTGGTCATG 60.037 55.000 0.00 0.0 0.0 3.07 F
381 382 0.036671 CTCTGCTGCTGTGGTCATGA 60.037 55.000 0.00 0.0 0.0 3.07 F
382 383 0.616891 TCTGCTGCTGTGGTCATGAT 59.383 50.000 0.00 0.0 0.0 2.45 F
383 384 1.003928 TCTGCTGCTGTGGTCATGATT 59.996 47.619 0.00 0.0 0.0 2.57 F
2247 7359 0.322456 TGGAGGCCATTCTTTCGGTG 60.322 55.000 5.01 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1986 0.522626 TGTTCACCATTGCATGAGCG 59.477 50.000 0.0 0.0 46.23 5.03 R
2027 7133 0.678048 GGACCAATCACCAGAGCCAC 60.678 60.000 0.0 0.0 0.00 5.01 R
2247 7359 2.049433 CGGGTGTGTGTCTCGGTC 60.049 66.667 0.0 0.0 0.00 4.79 R
2364 7481 3.920231 AGCTCATCATCAGTTTAGCCA 57.080 42.857 0.0 0.0 0.00 4.75 R
3174 8381 2.806608 TGGTGAACGTCTTAGTGACC 57.193 50.000 0.0 0.0 42.49 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.357079 CGCCGCCAAGCAAGTCTT 61.357 61.111 0.00 0.00 34.78 3.01
34 35 2.563427 GCCGCCAAGCAAGTCTTC 59.437 61.111 0.00 0.00 31.27 2.87
35 36 1.968540 GCCGCCAAGCAAGTCTTCT 60.969 57.895 0.00 0.00 31.27 2.85
36 37 1.916697 GCCGCCAAGCAAGTCTTCTC 61.917 60.000 0.00 0.00 31.27 2.87
37 38 1.301677 CCGCCAAGCAAGTCTTCTCC 61.302 60.000 0.00 0.00 31.27 3.71
38 39 0.603707 CGCCAAGCAAGTCTTCTCCA 60.604 55.000 0.00 0.00 31.27 3.86
39 40 1.831580 GCCAAGCAAGTCTTCTCCAT 58.168 50.000 0.00 0.00 31.27 3.41
40 41 1.742268 GCCAAGCAAGTCTTCTCCATC 59.258 52.381 0.00 0.00 31.27 3.51
41 42 2.363683 CCAAGCAAGTCTTCTCCATCC 58.636 52.381 0.00 0.00 31.27 3.51
42 43 2.363683 CAAGCAAGTCTTCTCCATCCC 58.636 52.381 0.00 0.00 31.27 3.85
43 44 1.963985 AGCAAGTCTTCTCCATCCCT 58.036 50.000 0.00 0.00 0.00 4.20
44 45 1.836802 AGCAAGTCTTCTCCATCCCTC 59.163 52.381 0.00 0.00 0.00 4.30
45 46 1.134250 GCAAGTCTTCTCCATCCCTCC 60.134 57.143 0.00 0.00 0.00 4.30
46 47 2.476199 CAAGTCTTCTCCATCCCTCCT 58.524 52.381 0.00 0.00 0.00 3.69
47 48 2.843113 CAAGTCTTCTCCATCCCTCCTT 59.157 50.000 0.00 0.00 0.00 3.36
48 49 2.758130 AGTCTTCTCCATCCCTCCTTC 58.242 52.381 0.00 0.00 0.00 3.46
49 50 1.765904 GTCTTCTCCATCCCTCCTTCC 59.234 57.143 0.00 0.00 0.00 3.46
50 51 0.755686 CTTCTCCATCCCTCCTTCCG 59.244 60.000 0.00 0.00 0.00 4.30
51 52 0.691078 TTCTCCATCCCTCCTTCCGG 60.691 60.000 0.00 0.00 0.00 5.14
52 53 2.768344 TCCATCCCTCCTTCCGGC 60.768 66.667 0.00 0.00 0.00 6.13
53 54 4.241555 CCATCCCTCCTTCCGGCG 62.242 72.222 0.00 0.00 0.00 6.46
54 55 3.470888 CATCCCTCCTTCCGGCGT 61.471 66.667 6.01 0.00 0.00 5.68
55 56 3.470888 ATCCCTCCTTCCGGCGTG 61.471 66.667 6.01 0.00 0.00 5.34
70 71 4.373116 GTGCACCGCGAGAAGGGA 62.373 66.667 8.23 0.00 34.27 4.20
71 72 4.373116 TGCACCGCGAGAAGGGAC 62.373 66.667 8.23 0.00 34.27 4.46
72 73 4.373116 GCACCGCGAGAAGGGACA 62.373 66.667 8.23 0.00 34.27 4.02
73 74 2.125912 CACCGCGAGAAGGGACAG 60.126 66.667 8.23 0.00 34.27 3.51
74 75 4.070552 ACCGCGAGAAGGGACAGC 62.071 66.667 8.23 0.00 34.27 4.40
75 76 4.069232 CCGCGAGAAGGGACAGCA 62.069 66.667 8.23 0.00 34.27 4.41
76 77 2.507992 CGCGAGAAGGGACAGCAG 60.508 66.667 0.00 0.00 34.27 4.24
77 78 2.125350 GCGAGAAGGGACAGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
78 79 2.125350 CGAGAAGGGACAGCAGGC 60.125 66.667 0.00 0.00 0.00 4.85
79 80 2.270527 GAGAAGGGACAGCAGGCC 59.729 66.667 0.00 0.00 0.00 5.19
80 81 2.204059 AGAAGGGACAGCAGGCCT 60.204 61.111 0.00 0.00 0.00 5.19
81 82 2.250741 GAGAAGGGACAGCAGGCCTC 62.251 65.000 0.00 0.00 0.00 4.70
82 83 3.334054 AAGGGACAGCAGGCCTCC 61.334 66.667 0.00 0.00 0.00 4.30
86 87 3.706373 GACAGCAGGCCTCCGGAA 61.706 66.667 0.00 0.00 0.00 4.30
87 88 3.959991 GACAGCAGGCCTCCGGAAC 62.960 68.421 0.00 0.00 0.00 3.62
88 89 4.785453 CAGCAGGCCTCCGGAACC 62.785 72.222 14.18 14.18 0.00 3.62
100 101 4.452733 GGAACCCCGCCTCTCGTG 62.453 72.222 0.00 0.00 36.19 4.35
101 102 3.379445 GAACCCCGCCTCTCGTGA 61.379 66.667 0.00 0.00 36.19 4.35
102 103 2.683933 AACCCCGCCTCTCGTGAT 60.684 61.111 0.00 0.00 36.19 3.06
103 104 2.630592 GAACCCCGCCTCTCGTGATC 62.631 65.000 0.00 0.00 36.19 2.92
104 105 3.917760 CCCCGCCTCTCGTGATCC 61.918 72.222 0.00 0.00 36.19 3.36
105 106 2.835431 CCCGCCTCTCGTGATCCT 60.835 66.667 0.00 0.00 36.19 3.24
106 107 2.415010 CCGCCTCTCGTGATCCTG 59.585 66.667 0.00 0.00 36.19 3.86
107 108 2.418910 CCGCCTCTCGTGATCCTGT 61.419 63.158 0.00 0.00 36.19 4.00
108 109 1.101635 CCGCCTCTCGTGATCCTGTA 61.102 60.000 0.00 0.00 36.19 2.74
109 110 0.955178 CGCCTCTCGTGATCCTGTAT 59.045 55.000 0.00 0.00 0.00 2.29
110 111 1.335415 CGCCTCTCGTGATCCTGTATG 60.335 57.143 0.00 0.00 0.00 2.39
111 112 1.000283 GCCTCTCGTGATCCTGTATGG 60.000 57.143 0.00 0.00 37.10 2.74
112 113 1.615883 CCTCTCGTGATCCTGTATGGG 59.384 57.143 0.00 0.00 36.20 4.00
113 114 2.587522 CTCTCGTGATCCTGTATGGGA 58.412 52.381 0.00 0.00 39.95 4.37
114 115 2.556189 CTCTCGTGATCCTGTATGGGAG 59.444 54.545 0.00 0.00 38.92 4.30
115 116 2.174854 TCTCGTGATCCTGTATGGGAGA 59.825 50.000 0.00 0.00 38.92 3.71
116 117 2.556189 CTCGTGATCCTGTATGGGAGAG 59.444 54.545 0.00 0.00 38.92 3.20
117 118 1.615883 CGTGATCCTGTATGGGAGAGG 59.384 57.143 0.00 0.00 40.14 3.69
118 119 1.974236 GTGATCCTGTATGGGAGAGGG 59.026 57.143 0.00 0.00 39.21 4.30
119 120 1.132721 TGATCCTGTATGGGAGAGGGG 60.133 57.143 0.00 0.00 39.21 4.79
120 121 0.474660 ATCCTGTATGGGAGAGGGGC 60.475 60.000 0.00 0.00 39.21 5.80
121 122 2.511452 CCTGTATGGGAGAGGGGCG 61.511 68.421 0.00 0.00 34.80 6.13
122 123 1.457643 CTGTATGGGAGAGGGGCGA 60.458 63.158 0.00 0.00 0.00 5.54
123 124 0.833834 CTGTATGGGAGAGGGGCGAT 60.834 60.000 0.00 0.00 0.00 4.58
124 125 0.832135 TGTATGGGAGAGGGGCGATC 60.832 60.000 0.00 0.00 0.00 3.69
125 126 0.832135 GTATGGGAGAGGGGCGATCA 60.832 60.000 0.00 0.00 0.00 2.92
126 127 0.542938 TATGGGAGAGGGGCGATCAG 60.543 60.000 0.00 0.00 0.00 2.90
127 128 3.237741 GGGAGAGGGGCGATCAGG 61.238 72.222 0.00 0.00 0.00 3.86
128 129 2.444895 GGAGAGGGGCGATCAGGT 60.445 66.667 0.00 0.00 0.00 4.00
129 130 2.066999 GGAGAGGGGCGATCAGGTT 61.067 63.158 0.00 0.00 0.00 3.50
130 131 1.627297 GGAGAGGGGCGATCAGGTTT 61.627 60.000 0.00 0.00 0.00 3.27
131 132 0.253327 GAGAGGGGCGATCAGGTTTT 59.747 55.000 0.00 0.00 0.00 2.43
132 133 0.698818 AGAGGGGCGATCAGGTTTTT 59.301 50.000 0.00 0.00 0.00 1.94
133 134 0.811281 GAGGGGCGATCAGGTTTTTG 59.189 55.000 0.00 0.00 0.00 2.44
134 135 0.611896 AGGGGCGATCAGGTTTTTGG 60.612 55.000 0.00 0.00 0.00 3.28
135 136 1.604147 GGGGCGATCAGGTTTTTGGG 61.604 60.000 0.00 0.00 0.00 4.12
136 137 1.604147 GGGCGATCAGGTTTTTGGGG 61.604 60.000 0.00 0.00 0.00 4.96
137 138 0.610785 GGCGATCAGGTTTTTGGGGA 60.611 55.000 0.00 0.00 0.00 4.81
138 139 0.811281 GCGATCAGGTTTTTGGGGAG 59.189 55.000 0.00 0.00 0.00 4.30
139 140 0.811281 CGATCAGGTTTTTGGGGAGC 59.189 55.000 0.00 0.00 0.00 4.70
140 141 0.811281 GATCAGGTTTTTGGGGAGCG 59.189 55.000 0.00 0.00 0.00 5.03
141 142 1.250840 ATCAGGTTTTTGGGGAGCGC 61.251 55.000 0.00 0.00 0.00 5.92
142 143 2.197324 AGGTTTTTGGGGAGCGCA 59.803 55.556 11.47 0.00 0.00 6.09
143 144 2.200337 AGGTTTTTGGGGAGCGCAC 61.200 57.895 11.47 1.97 0.00 5.34
144 145 2.200337 GGTTTTTGGGGAGCGCACT 61.200 57.895 11.47 0.00 0.00 4.40
145 146 1.285950 GTTTTTGGGGAGCGCACTC 59.714 57.895 11.47 1.84 42.66 3.51
146 147 2.258013 TTTTTGGGGAGCGCACTCG 61.258 57.895 11.47 0.00 44.48 4.18
174 175 2.941333 TCGCGAACGACGACTTCT 59.059 55.556 6.20 0.00 45.12 2.85
175 176 1.280746 TCGCGAACGACGACTTCTT 59.719 52.632 6.20 0.00 45.12 2.52
176 177 0.723790 TCGCGAACGACGACTTCTTC 60.724 55.000 6.20 0.00 45.12 2.87
177 178 1.662845 CGCGAACGACGACTTCTTCC 61.663 60.000 0.00 0.00 45.77 3.46
178 179 1.342796 GCGAACGACGACTTCTTCCC 61.343 60.000 0.00 0.00 45.77 3.97
179 180 0.731855 CGAACGACGACTTCTTCCCC 60.732 60.000 0.00 0.00 45.77 4.81
180 181 0.731855 GAACGACGACTTCTTCCCCG 60.732 60.000 0.00 0.00 0.00 5.73
181 182 1.174712 AACGACGACTTCTTCCCCGA 61.175 55.000 0.00 0.00 0.00 5.14
182 183 1.154073 CGACGACTTCTTCCCCGAC 60.154 63.158 0.00 0.00 0.00 4.79
183 184 1.214853 GACGACTTCTTCCCCGACC 59.785 63.158 0.00 0.00 0.00 4.79
184 185 1.228800 ACGACTTCTTCCCCGACCT 60.229 57.895 0.00 0.00 0.00 3.85
185 186 1.249469 ACGACTTCTTCCCCGACCTC 61.249 60.000 0.00 0.00 0.00 3.85
186 187 1.511768 GACTTCTTCCCCGACCTCG 59.488 63.158 0.00 0.00 39.44 4.63
196 197 4.052229 CGACCTCGGCAACCTCGT 62.052 66.667 0.00 0.00 35.37 4.18
197 198 2.126031 GACCTCGGCAACCTCGTC 60.126 66.667 0.00 0.00 0.00 4.20
198 199 3.644399 GACCTCGGCAACCTCGTCC 62.644 68.421 0.00 0.00 0.00 4.79
199 200 3.382832 CCTCGGCAACCTCGTCCT 61.383 66.667 0.00 0.00 0.00 3.85
200 201 2.182030 CTCGGCAACCTCGTCCTC 59.818 66.667 0.00 0.00 0.00 3.71
201 202 3.685214 CTCGGCAACCTCGTCCTCG 62.685 68.421 0.00 0.00 38.55 4.63
202 203 3.744719 CGGCAACCTCGTCCTCGA 61.745 66.667 0.00 0.00 44.12 4.04
203 204 2.126031 GGCAACCTCGTCCTCGAC 60.126 66.667 0.00 0.00 41.35 4.20
212 213 2.202756 GTCCTCGACGACATGGGC 60.203 66.667 9.35 0.00 32.74 5.36
213 214 3.822192 TCCTCGACGACATGGGCG 61.822 66.667 8.44 8.44 0.00 6.13
214 215 3.822192 CCTCGACGACATGGGCGA 61.822 66.667 15.69 8.33 0.00 5.54
215 216 2.579787 CTCGACGACATGGGCGAC 60.580 66.667 15.69 9.34 0.00 5.19
216 217 3.336715 CTCGACGACATGGGCGACA 62.337 63.158 15.69 0.00 0.00 4.35
217 218 2.431771 CGACGACATGGGCGACAA 60.432 61.111 15.69 0.00 0.00 3.18
218 219 2.726691 CGACGACATGGGCGACAAC 61.727 63.158 15.69 4.97 0.00 3.32
219 220 2.726691 GACGACATGGGCGACAACG 61.727 63.158 15.69 0.00 42.93 4.10
220 221 2.736995 CGACATGGGCGACAACGT 60.737 61.111 4.45 0.00 41.98 3.99
221 222 2.726691 CGACATGGGCGACAACGTC 61.727 63.158 4.45 0.00 43.86 4.34
222 223 1.666553 GACATGGGCGACAACGTCA 60.667 57.895 0.00 0.00 46.58 4.35
223 224 1.225376 GACATGGGCGACAACGTCAA 61.225 55.000 0.00 0.00 46.58 3.18
224 225 1.206578 CATGGGCGACAACGTCAAC 59.793 57.895 0.00 0.00 46.58 3.18
225 226 2.314647 ATGGGCGACAACGTCAACG 61.315 57.895 0.12 0.12 46.58 4.10
226 227 4.364409 GGGCGACAACGTCAACGC 62.364 66.667 19.43 19.43 46.58 4.84
228 229 4.696172 GCGACAACGTCAACGCCG 62.696 66.667 17.74 3.11 44.27 6.46
229 230 3.025743 CGACAACGTCAACGCCGA 61.026 61.111 1.81 0.00 44.43 5.54
230 231 2.542896 GACAACGTCAACGCCGAC 59.457 61.111 1.81 0.00 44.43 4.79
255 256 3.173853 CACCCGTTGCACCGTATG 58.826 61.111 2.11 0.00 0.00 2.39
256 257 1.669760 CACCCGTTGCACCGTATGT 60.670 57.895 2.11 0.00 0.00 2.29
270 271 5.470047 ACCGTATGTGATTCTATCCTTCC 57.530 43.478 0.00 0.00 0.00 3.46
271 272 5.148502 ACCGTATGTGATTCTATCCTTCCT 58.851 41.667 0.00 0.00 0.00 3.36
272 273 5.011125 ACCGTATGTGATTCTATCCTTCCTG 59.989 44.000 0.00 0.00 0.00 3.86
273 274 5.011125 CCGTATGTGATTCTATCCTTCCTGT 59.989 44.000 0.00 0.00 0.00 4.00
274 275 6.463049 CCGTATGTGATTCTATCCTTCCTGTT 60.463 42.308 0.00 0.00 0.00 3.16
275 276 6.642950 CGTATGTGATTCTATCCTTCCTGTTC 59.357 42.308 0.00 0.00 0.00 3.18
276 277 5.011090 TGTGATTCTATCCTTCCTGTTCG 57.989 43.478 0.00 0.00 0.00 3.95
277 278 4.709886 TGTGATTCTATCCTTCCTGTTCGA 59.290 41.667 0.00 0.00 0.00 3.71
278 279 5.163509 TGTGATTCTATCCTTCCTGTTCGAG 60.164 44.000 0.00 0.00 0.00 4.04
279 280 5.067936 GTGATTCTATCCTTCCTGTTCGAGA 59.932 44.000 0.00 0.00 0.00 4.04
280 281 5.835819 TGATTCTATCCTTCCTGTTCGAGAT 59.164 40.000 0.00 0.00 0.00 2.75
281 282 5.776173 TTCTATCCTTCCTGTTCGAGATC 57.224 43.478 0.00 0.00 0.00 2.75
282 283 3.815962 TCTATCCTTCCTGTTCGAGATCG 59.184 47.826 0.00 0.00 41.45 3.69
283 284 1.835494 TCCTTCCTGTTCGAGATCGT 58.165 50.000 1.70 0.00 40.80 3.73
284 285 1.472878 TCCTTCCTGTTCGAGATCGTG 59.527 52.381 1.70 0.00 40.80 4.35
285 286 1.469940 CCTTCCTGTTCGAGATCGTGG 60.470 57.143 1.70 1.89 40.80 4.94
286 287 1.202582 CTTCCTGTTCGAGATCGTGGT 59.797 52.381 1.70 0.00 40.80 4.16
287 288 2.118313 TCCTGTTCGAGATCGTGGTA 57.882 50.000 1.70 0.00 40.80 3.25
288 289 2.439409 TCCTGTTCGAGATCGTGGTAA 58.561 47.619 1.70 0.00 40.80 2.85
289 290 2.821378 TCCTGTTCGAGATCGTGGTAAA 59.179 45.455 1.70 0.00 40.80 2.01
290 291 3.256383 TCCTGTTCGAGATCGTGGTAAAA 59.744 43.478 1.70 0.00 40.80 1.52
291 292 4.081862 TCCTGTTCGAGATCGTGGTAAAAT 60.082 41.667 1.70 0.00 40.80 1.82
292 293 4.630069 CCTGTTCGAGATCGTGGTAAAATT 59.370 41.667 1.70 0.00 40.80 1.82
293 294 5.220416 CCTGTTCGAGATCGTGGTAAAATTC 60.220 44.000 1.70 0.00 40.80 2.17
294 295 5.231702 TGTTCGAGATCGTGGTAAAATTCA 58.768 37.500 1.70 0.00 40.80 2.57
295 296 5.872617 TGTTCGAGATCGTGGTAAAATTCAT 59.127 36.000 1.70 0.00 40.80 2.57
296 297 5.966636 TCGAGATCGTGGTAAAATTCATG 57.033 39.130 1.70 0.00 40.80 3.07
297 298 4.270084 TCGAGATCGTGGTAAAATTCATGC 59.730 41.667 1.70 0.00 40.80 4.06
298 299 4.271049 CGAGATCGTGGTAAAATTCATGCT 59.729 41.667 0.00 0.00 34.11 3.79
299 300 5.220662 CGAGATCGTGGTAAAATTCATGCTT 60.221 40.000 0.00 0.00 34.11 3.91
300 301 6.124088 AGATCGTGGTAAAATTCATGCTTC 57.876 37.500 0.00 0.00 0.00 3.86
301 302 5.882557 AGATCGTGGTAAAATTCATGCTTCT 59.117 36.000 0.00 0.00 0.00 2.85
302 303 7.047891 AGATCGTGGTAAAATTCATGCTTCTA 58.952 34.615 0.00 0.00 0.00 2.10
303 304 6.662414 TCGTGGTAAAATTCATGCTTCTAG 57.338 37.500 0.00 0.00 0.00 2.43
304 305 5.064707 TCGTGGTAAAATTCATGCTTCTAGC 59.935 40.000 0.00 0.00 42.82 3.42
313 314 4.972875 GCTTCTAGCATGTGCCCT 57.027 55.556 0.57 0.00 41.89 5.19
315 316 1.876322 GCTTCTAGCATGTGCCCTAG 58.124 55.000 0.57 0.00 41.89 3.02
316 317 1.414181 GCTTCTAGCATGTGCCCTAGA 59.586 52.381 0.57 4.27 41.89 2.43
317 318 2.038295 GCTTCTAGCATGTGCCCTAGAT 59.962 50.000 8.16 0.00 41.89 1.98
318 319 3.661944 CTTCTAGCATGTGCCCTAGATG 58.338 50.000 8.16 7.31 39.62 2.90
319 320 2.682594 TCTAGCATGTGCCCTAGATGT 58.317 47.619 0.57 0.00 43.38 3.06
320 321 2.366590 TCTAGCATGTGCCCTAGATGTG 59.633 50.000 0.57 0.00 43.38 3.21
321 322 1.206878 AGCATGTGCCCTAGATGTGA 58.793 50.000 0.57 0.00 43.38 3.58
322 323 1.773052 AGCATGTGCCCTAGATGTGAT 59.227 47.619 0.57 0.00 43.38 3.06
323 324 2.974794 AGCATGTGCCCTAGATGTGATA 59.025 45.455 0.57 0.00 43.38 2.15
324 325 3.586174 AGCATGTGCCCTAGATGTGATAT 59.414 43.478 0.57 0.00 43.38 1.63
325 326 4.779489 AGCATGTGCCCTAGATGTGATATA 59.221 41.667 0.57 0.00 43.38 0.86
326 327 5.427806 AGCATGTGCCCTAGATGTGATATAT 59.572 40.000 0.57 0.00 43.38 0.86
327 328 6.069789 AGCATGTGCCCTAGATGTGATATATT 60.070 38.462 0.57 0.00 43.38 1.28
328 329 6.259608 GCATGTGCCCTAGATGTGATATATTC 59.740 42.308 0.00 0.00 32.84 1.75
329 330 6.933514 TGTGCCCTAGATGTGATATATTCA 57.066 37.500 0.00 0.00 0.00 2.57
330 331 7.500629 TGTGCCCTAGATGTGATATATTCAT 57.499 36.000 0.00 4.68 36.54 2.57
331 332 7.559486 TGTGCCCTAGATGTGATATATTCATC 58.441 38.462 16.99 16.99 36.54 2.92
332 333 7.401204 TGTGCCCTAGATGTGATATATTCATCT 59.599 37.037 24.34 24.34 46.33 2.90
333 334 7.710044 GTGCCCTAGATGTGATATATTCATCTG 59.290 40.741 26.71 20.35 44.95 2.90
334 335 6.705381 GCCCTAGATGTGATATATTCATCTGC 59.295 42.308 26.71 21.62 44.95 4.26
335 336 7.418827 GCCCTAGATGTGATATATTCATCTGCT 60.419 40.741 26.71 14.59 44.95 4.24
336 337 9.140874 CCCTAGATGTGATATATTCATCTGCTA 57.859 37.037 26.71 15.90 44.95 3.49
339 340 8.890124 AGATGTGATATATTCATCTGCTATGC 57.110 34.615 22.27 0.00 44.08 3.14
340 341 8.706521 AGATGTGATATATTCATCTGCTATGCT 58.293 33.333 22.27 6.76 44.08 3.79
341 342 9.978044 GATGTGATATATTCATCTGCTATGCTA 57.022 33.333 17.23 0.00 36.54 3.49
342 343 9.984190 ATGTGATATATTCATCTGCTATGCTAG 57.016 33.333 0.00 0.00 36.54 3.42
343 344 8.975295 TGTGATATATTCATCTGCTATGCTAGT 58.025 33.333 0.00 0.00 36.54 2.57
344 345 9.814899 GTGATATATTCATCTGCTATGCTAGTT 57.185 33.333 0.00 0.00 36.54 2.24
346 347 9.179552 GATATATTCATCTGCTATGCTAGTTCG 57.820 37.037 0.00 0.00 0.00 3.95
347 348 3.018598 TCATCTGCTATGCTAGTTCGC 57.981 47.619 0.00 0.00 0.00 4.70
348 349 2.362077 TCATCTGCTATGCTAGTTCGCA 59.638 45.455 0.00 0.00 45.10 5.10
361 362 7.786178 TGCTAGTTCGCATGATTAGTTTAAT 57.214 32.000 0.00 0.00 34.44 1.40
362 363 7.851508 TGCTAGTTCGCATGATTAGTTTAATC 58.148 34.615 0.00 2.61 38.95 1.75
363 364 7.710907 TGCTAGTTCGCATGATTAGTTTAATCT 59.289 33.333 0.00 0.00 39.09 2.40
364 365 8.217778 GCTAGTTCGCATGATTAGTTTAATCTC 58.782 37.037 0.00 0.79 43.79 2.75
365 366 9.469807 CTAGTTCGCATGATTAGTTTAATCTCT 57.530 33.333 0.00 0.00 43.79 3.10
366 367 8.136057 AGTTCGCATGATTAGTTTAATCTCTG 57.864 34.615 0.00 8.20 43.79 3.35
367 368 6.530913 TCGCATGATTAGTTTAATCTCTGC 57.469 37.500 17.42 17.42 43.79 4.26
368 369 6.283694 TCGCATGATTAGTTTAATCTCTGCT 58.716 36.000 20.98 0.00 43.84 4.24
369 370 6.201615 TCGCATGATTAGTTTAATCTCTGCTG 59.798 38.462 20.98 17.20 43.84 4.41
370 371 6.141462 GCATGATTAGTTTAATCTCTGCTGC 58.859 40.000 18.75 0.00 43.34 5.25
371 372 6.017275 GCATGATTAGTTTAATCTCTGCTGCT 60.017 38.462 18.75 0.00 43.34 4.24
372 373 6.915544 TGATTAGTTTAATCTCTGCTGCTG 57.084 37.500 0.00 0.00 43.79 4.41
373 374 6.409704 TGATTAGTTTAATCTCTGCTGCTGT 58.590 36.000 0.00 0.00 43.79 4.40
374 375 6.314648 TGATTAGTTTAATCTCTGCTGCTGTG 59.685 38.462 0.00 1.40 43.79 3.66
375 376 3.341823 AGTTTAATCTCTGCTGCTGTGG 58.658 45.455 0.00 0.00 0.00 4.17
376 377 3.077359 GTTTAATCTCTGCTGCTGTGGT 58.923 45.455 0.00 0.00 0.00 4.16
377 378 2.680312 TAATCTCTGCTGCTGTGGTC 57.320 50.000 0.00 0.00 0.00 4.02
378 379 0.689055 AATCTCTGCTGCTGTGGTCA 59.311 50.000 0.00 0.00 0.00 4.02
379 380 0.910338 ATCTCTGCTGCTGTGGTCAT 59.090 50.000 0.00 0.00 0.00 3.06
380 381 0.036671 TCTCTGCTGCTGTGGTCATG 60.037 55.000 0.00 0.00 0.00 3.07
381 382 0.036671 CTCTGCTGCTGTGGTCATGA 60.037 55.000 0.00 0.00 0.00 3.07
382 383 0.616891 TCTGCTGCTGTGGTCATGAT 59.383 50.000 0.00 0.00 0.00 2.45
383 384 1.003928 TCTGCTGCTGTGGTCATGATT 59.996 47.619 0.00 0.00 0.00 2.57
384 385 1.816835 CTGCTGCTGTGGTCATGATTT 59.183 47.619 0.00 0.00 0.00 2.17
385 386 3.011818 CTGCTGCTGTGGTCATGATTTA 58.988 45.455 0.00 0.00 0.00 1.40
386 387 3.623703 TGCTGCTGTGGTCATGATTTAT 58.376 40.909 0.00 0.00 0.00 1.40
387 388 3.628942 TGCTGCTGTGGTCATGATTTATC 59.371 43.478 0.00 0.00 0.00 1.75
388 389 3.881688 GCTGCTGTGGTCATGATTTATCT 59.118 43.478 0.00 0.00 0.00 1.98
389 390 4.337555 GCTGCTGTGGTCATGATTTATCTT 59.662 41.667 0.00 0.00 0.00 2.40
390 391 5.528690 GCTGCTGTGGTCATGATTTATCTTA 59.471 40.000 0.00 0.00 0.00 2.10
391 392 6.206243 GCTGCTGTGGTCATGATTTATCTTAT 59.794 38.462 0.00 0.00 0.00 1.73
392 393 7.500720 TGCTGTGGTCATGATTTATCTTATG 57.499 36.000 0.00 0.00 0.00 1.90
393 394 7.056006 TGCTGTGGTCATGATTTATCTTATGT 58.944 34.615 0.00 0.00 0.00 2.29
394 395 7.557358 TGCTGTGGTCATGATTTATCTTATGTT 59.443 33.333 0.00 0.00 0.00 2.71
395 396 8.408601 GCTGTGGTCATGATTTATCTTATGTTT 58.591 33.333 0.00 0.00 0.00 2.83
416 417 9.760077 ATGTTTATTCGGATTAAATCTCGTAGT 57.240 29.630 7.97 0.00 0.00 2.73
423 424 8.068893 TCGGATTAAATCTCGTAGTAATTTGC 57.931 34.615 0.00 0.00 0.00 3.68
424 425 7.924412 TCGGATTAAATCTCGTAGTAATTTGCT 59.076 33.333 0.00 0.00 0.00 3.91
425 426 8.215132 CGGATTAAATCTCGTAGTAATTTGCTC 58.785 37.037 0.00 0.00 0.00 4.26
426 427 9.042008 GGATTAAATCTCGTAGTAATTTGCTCA 57.958 33.333 0.00 0.00 0.00 4.26
443 444 8.773033 ATTTGCTCATATTTTACATCTTCCCT 57.227 30.769 0.00 0.00 0.00 4.20
444 445 7.572523 TTGCTCATATTTTACATCTTCCCTG 57.427 36.000 0.00 0.00 0.00 4.45
624 738 1.433534 GCTAGTCCTGCAGTGTGTTC 58.566 55.000 13.81 0.00 0.00 3.18
664 780 7.311675 CCTCTCAGCTAATATACTACTCCCTCT 60.312 44.444 0.00 0.00 0.00 3.69
666 782 7.237887 TCTCAGCTAATATACTACTCCCTCTGA 59.762 40.741 0.00 0.00 0.00 3.27
740 975 8.232913 ACATGGTTTAGTGTGTTTATTCACTT 57.767 30.769 0.00 0.00 43.39 3.16
825 1060 4.021368 GGAGGAAGTACTAACAGCAGTCAA 60.021 45.833 0.00 0.00 0.00 3.18
872 1111 5.704515 GGGGTTAAGTTCTGTCTACTTTTCC 59.295 44.000 0.00 0.00 37.12 3.13
947 1186 3.119743 CCATGTGTGTATTTCACTGCAGG 60.120 47.826 19.93 7.28 46.27 4.85
1021 1261 1.483827 TGATGGGTAGCAGCAAGAGAG 59.516 52.381 0.00 0.00 0.00 3.20
1026 1266 1.202405 GGTAGCAGCAAGAGAGAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
1495 1750 3.425577 ACTATGTTTGCAATGCATCCG 57.574 42.857 9.39 12.89 38.76 4.18
1496 1751 2.099592 ACTATGTTTGCAATGCATCCGG 59.900 45.455 9.39 0.00 38.76 5.14
1533 1791 1.374758 GCCACCTCACAGTCTTCCG 60.375 63.158 0.00 0.00 0.00 4.30
1654 1912 2.357327 GTGTGATGTGTACACGCCTA 57.643 50.000 20.61 3.82 41.16 3.93
1985 2249 1.598685 GGGACCTTCGCAACGGAAA 60.599 57.895 0.00 0.00 0.00 3.13
2027 7133 1.753073 GATTTGGGGACTGCTGGATTG 59.247 52.381 0.00 0.00 0.00 2.67
2247 7359 0.322456 TGGAGGCCATTCTTTCGGTG 60.322 55.000 5.01 0.00 0.00 4.94
2286 7398 1.022451 TTACGCGTTTGATCCCTGGC 61.022 55.000 20.78 0.00 0.00 4.85
2364 7481 2.025887 GCTAGCCATGCCATATACCCTT 60.026 50.000 2.29 0.00 0.00 3.95
2366 7483 1.076024 AGCCATGCCATATACCCTTGG 59.924 52.381 0.00 0.00 36.03 3.61
2375 7492 5.304686 CCATATACCCTTGGCTAAACTGA 57.695 43.478 0.00 0.00 0.00 3.41
2377 7494 5.707298 CCATATACCCTTGGCTAAACTGATG 59.293 44.000 0.00 0.00 0.00 3.07
2379 7496 5.653255 ATACCCTTGGCTAAACTGATGAT 57.347 39.130 0.00 0.00 0.00 2.45
2382 7499 3.881688 CCCTTGGCTAAACTGATGATGAG 59.118 47.826 0.00 0.00 0.00 2.90
2385 7502 5.357742 TTGGCTAAACTGATGATGAGCTA 57.642 39.130 0.00 0.00 0.00 3.32
2386 7503 4.953667 TGGCTAAACTGATGATGAGCTAG 58.046 43.478 0.00 0.00 0.00 3.42
2387 7504 3.745458 GGCTAAACTGATGATGAGCTAGC 59.255 47.826 6.62 6.62 0.00 3.42
2388 7505 4.502950 GGCTAAACTGATGATGAGCTAGCT 60.503 45.833 19.45 19.45 32.87 3.32
2389 7506 5.279206 GGCTAAACTGATGATGAGCTAGCTA 60.279 44.000 19.38 1.43 32.87 3.32
2390 7507 6.397272 GCTAAACTGATGATGAGCTAGCTAT 58.603 40.000 19.38 7.41 0.00 2.97
2391 7508 6.310956 GCTAAACTGATGATGAGCTAGCTATG 59.689 42.308 19.38 4.43 0.00 2.23
2392 7509 6.416631 AAACTGATGATGAGCTAGCTATGA 57.583 37.500 19.38 5.03 0.00 2.15
2486 7603 5.048846 ACTTCAGCTAAAAGACCAAAGGA 57.951 39.130 13.44 0.00 0.00 3.36
2529 7646 8.380742 TCTATCACCTAAGGACTTGAAGAAAT 57.619 34.615 0.00 0.00 0.00 2.17
2612 7729 5.353400 GCCACCTACATTTTCTAGTACCAAC 59.647 44.000 0.00 0.00 0.00 3.77
2729 7847 3.444742 ACATATCATGTGGTTGTTGCAGG 59.555 43.478 0.00 0.00 43.01 4.85
2768 7886 5.680619 TGTGAAAGGAAGCTGAAAGTTAGA 58.319 37.500 0.00 0.00 35.30 2.10
2902 8107 3.510388 TCTTTCATCAGGCGTACTCTG 57.490 47.619 6.72 6.72 0.00 3.35
2925 8130 1.438651 TACACCGTTGCTGAATGCTC 58.561 50.000 0.00 0.00 43.37 4.26
3091 8298 8.209584 AGGTCATATTGCTATGATGGATATGTC 58.790 37.037 0.00 0.00 44.20 3.06
3158 8365 6.824305 ATTTAAGCAGTCTGTTAGCATGTT 57.176 33.333 0.93 0.00 0.00 2.71
3253 8461 4.127171 TGGTCTTAGTCTGCTGTTCAAAC 58.873 43.478 0.00 0.00 0.00 2.93
3257 8465 6.073711 GGTCTTAGTCTGCTGTTCAAACTTAC 60.074 42.308 0.00 0.00 0.00 2.34
3295 8503 6.754209 TGTATTAAAAGTGTGTGCCTTTTGTG 59.246 34.615 8.06 0.00 41.08 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.314388 GAAGACTTGCTTGGCGGCG 62.314 63.158 0.51 0.51 36.83 6.46
17 18 1.916697 GAGAAGACTTGCTTGGCGGC 61.917 60.000 0.00 0.00 36.83 6.53
18 19 1.301677 GGAGAAGACTTGCTTGGCGG 61.302 60.000 0.00 0.00 36.83 6.13
19 20 0.603707 TGGAGAAGACTTGCTTGGCG 60.604 55.000 0.00 0.00 36.83 5.69
20 21 1.742268 GATGGAGAAGACTTGCTTGGC 59.258 52.381 0.00 0.00 36.83 4.52
21 22 2.363683 GGATGGAGAAGACTTGCTTGG 58.636 52.381 0.00 0.00 36.83 3.61
22 23 2.026449 AGGGATGGAGAAGACTTGCTTG 60.026 50.000 0.00 0.00 36.83 4.01
23 24 2.238395 GAGGGATGGAGAAGACTTGCTT 59.762 50.000 0.00 0.00 40.25 3.91
24 25 1.836802 GAGGGATGGAGAAGACTTGCT 59.163 52.381 0.00 0.00 0.00 3.91
25 26 1.134250 GGAGGGATGGAGAAGACTTGC 60.134 57.143 0.00 0.00 0.00 4.01
26 27 2.476199 AGGAGGGATGGAGAAGACTTG 58.524 52.381 0.00 0.00 0.00 3.16
27 28 2.959421 AGGAGGGATGGAGAAGACTT 57.041 50.000 0.00 0.00 0.00 3.01
28 29 2.628290 GGAAGGAGGGATGGAGAAGACT 60.628 54.545 0.00 0.00 0.00 3.24
29 30 1.765904 GGAAGGAGGGATGGAGAAGAC 59.234 57.143 0.00 0.00 0.00 3.01
30 31 1.689575 CGGAAGGAGGGATGGAGAAGA 60.690 57.143 0.00 0.00 0.00 2.87
31 32 0.755686 CGGAAGGAGGGATGGAGAAG 59.244 60.000 0.00 0.00 0.00 2.85
32 33 2.916355 CGGAAGGAGGGATGGAGAA 58.084 57.895 0.00 0.00 0.00 2.87
33 34 4.707584 CGGAAGGAGGGATGGAGA 57.292 61.111 0.00 0.00 0.00 3.71
53 54 4.373116 TCCCTTCTCGCGGTGCAC 62.373 66.667 8.80 8.80 0.00 4.57
54 55 4.373116 GTCCCTTCTCGCGGTGCA 62.373 66.667 6.13 0.00 0.00 4.57
55 56 4.373116 TGTCCCTTCTCGCGGTGC 62.373 66.667 6.13 0.00 0.00 5.01
56 57 2.125912 CTGTCCCTTCTCGCGGTG 60.126 66.667 6.13 0.00 0.00 4.94
57 58 4.070552 GCTGTCCCTTCTCGCGGT 62.071 66.667 6.13 0.00 0.00 5.68
58 59 3.997064 CTGCTGTCCCTTCTCGCGG 62.997 68.421 6.13 0.00 0.00 6.46
59 60 2.507992 CTGCTGTCCCTTCTCGCG 60.508 66.667 0.00 0.00 0.00 5.87
60 61 2.125350 CCTGCTGTCCCTTCTCGC 60.125 66.667 0.00 0.00 0.00 5.03
61 62 2.125350 GCCTGCTGTCCCTTCTCG 60.125 66.667 0.00 0.00 0.00 4.04
62 63 2.250741 GAGGCCTGCTGTCCCTTCTC 62.251 65.000 12.00 0.00 0.00 2.87
63 64 2.204059 AGGCCTGCTGTCCCTTCT 60.204 61.111 3.11 0.00 0.00 2.85
64 65 2.270527 GAGGCCTGCTGTCCCTTC 59.729 66.667 12.00 0.00 0.00 3.46
65 66 3.334054 GGAGGCCTGCTGTCCCTT 61.334 66.667 18.47 0.00 0.00 3.95
83 84 4.452733 CACGAGAGGCGGGGTTCC 62.453 72.222 0.00 0.00 46.49 3.62
84 85 2.630592 GATCACGAGAGGCGGGGTTC 62.631 65.000 0.00 0.00 45.52 3.62
85 86 2.683933 ATCACGAGAGGCGGGGTT 60.684 61.111 0.00 0.00 45.52 4.11
86 87 3.148279 GATCACGAGAGGCGGGGT 61.148 66.667 0.00 0.00 45.52 4.95
87 88 3.917760 GGATCACGAGAGGCGGGG 61.918 72.222 0.00 0.00 45.52 5.73
89 90 1.101635 TACAGGATCACGAGAGGCGG 61.102 60.000 0.00 0.00 46.49 6.13
90 91 4.526530 CCATACAGGATCACGAGAGGCG 62.527 59.091 0.00 0.00 43.26 5.52
91 92 1.000283 CCATACAGGATCACGAGAGGC 60.000 57.143 0.00 0.00 41.22 4.70
92 93 1.615883 CCCATACAGGATCACGAGAGG 59.384 57.143 0.00 0.00 41.22 3.69
93 94 2.556189 CTCCCATACAGGATCACGAGAG 59.444 54.545 0.00 0.00 41.22 3.20
94 95 2.174854 TCTCCCATACAGGATCACGAGA 59.825 50.000 0.00 0.00 41.22 4.04
95 96 2.556189 CTCTCCCATACAGGATCACGAG 59.444 54.545 0.00 0.00 41.22 4.18
96 97 2.587522 CTCTCCCATACAGGATCACGA 58.412 52.381 0.00 0.00 41.22 4.35
97 98 1.615883 CCTCTCCCATACAGGATCACG 59.384 57.143 0.00 0.00 41.22 4.35
98 99 1.974236 CCCTCTCCCATACAGGATCAC 59.026 57.143 0.00 0.00 41.22 3.06
99 100 1.132721 CCCCTCTCCCATACAGGATCA 60.133 57.143 0.00 0.00 41.22 2.92
100 101 1.650528 CCCCTCTCCCATACAGGATC 58.349 60.000 0.00 0.00 41.22 3.36
101 102 0.474660 GCCCCTCTCCCATACAGGAT 60.475 60.000 0.00 0.00 41.22 3.24
102 103 1.074471 GCCCCTCTCCCATACAGGA 60.074 63.158 0.00 0.00 41.22 3.86
103 104 2.511452 CGCCCCTCTCCCATACAGG 61.511 68.421 0.00 0.00 37.03 4.00
104 105 0.833834 ATCGCCCCTCTCCCATACAG 60.834 60.000 0.00 0.00 0.00 2.74
105 106 0.832135 GATCGCCCCTCTCCCATACA 60.832 60.000 0.00 0.00 0.00 2.29
106 107 0.832135 TGATCGCCCCTCTCCCATAC 60.832 60.000 0.00 0.00 0.00 2.39
107 108 0.542938 CTGATCGCCCCTCTCCCATA 60.543 60.000 0.00 0.00 0.00 2.74
108 109 1.840650 CTGATCGCCCCTCTCCCAT 60.841 63.158 0.00 0.00 0.00 4.00
109 110 2.444706 CTGATCGCCCCTCTCCCA 60.445 66.667 0.00 0.00 0.00 4.37
110 111 3.237741 CCTGATCGCCCCTCTCCC 61.238 72.222 0.00 0.00 0.00 4.30
111 112 1.627297 AAACCTGATCGCCCCTCTCC 61.627 60.000 0.00 0.00 0.00 3.71
112 113 0.253327 AAAACCTGATCGCCCCTCTC 59.747 55.000 0.00 0.00 0.00 3.20
113 114 0.698818 AAAAACCTGATCGCCCCTCT 59.301 50.000 0.00 0.00 0.00 3.69
114 115 0.811281 CAAAAACCTGATCGCCCCTC 59.189 55.000 0.00 0.00 0.00 4.30
115 116 0.611896 CCAAAAACCTGATCGCCCCT 60.612 55.000 0.00 0.00 0.00 4.79
116 117 1.604147 CCCAAAAACCTGATCGCCCC 61.604 60.000 0.00 0.00 0.00 5.80
117 118 1.604147 CCCCAAAAACCTGATCGCCC 61.604 60.000 0.00 0.00 0.00 6.13
118 119 0.610785 TCCCCAAAAACCTGATCGCC 60.611 55.000 0.00 0.00 0.00 5.54
119 120 0.811281 CTCCCCAAAAACCTGATCGC 59.189 55.000 0.00 0.00 0.00 4.58
120 121 0.811281 GCTCCCCAAAAACCTGATCG 59.189 55.000 0.00 0.00 0.00 3.69
121 122 0.811281 CGCTCCCCAAAAACCTGATC 59.189 55.000 0.00 0.00 0.00 2.92
122 123 1.250840 GCGCTCCCCAAAAACCTGAT 61.251 55.000 0.00 0.00 0.00 2.90
123 124 1.901464 GCGCTCCCCAAAAACCTGA 60.901 57.895 0.00 0.00 0.00 3.86
124 125 2.199652 TGCGCTCCCCAAAAACCTG 61.200 57.895 9.73 0.00 0.00 4.00
125 126 2.197324 TGCGCTCCCCAAAAACCT 59.803 55.556 9.73 0.00 0.00 3.50
126 127 2.142357 GAGTGCGCTCCCCAAAAACC 62.142 60.000 16.69 0.00 35.76 3.27
127 128 1.285950 GAGTGCGCTCCCCAAAAAC 59.714 57.895 16.69 0.00 35.76 2.43
128 129 2.258013 CGAGTGCGCTCCCCAAAAA 61.258 57.895 21.21 0.00 38.49 1.94
129 130 2.668212 CGAGTGCGCTCCCCAAAA 60.668 61.111 21.21 0.00 38.49 2.44
158 159 1.662845 GGAAGAAGTCGTCGTTCGCG 61.663 60.000 0.00 0.00 42.98 5.87
159 160 1.342796 GGGAAGAAGTCGTCGTTCGC 61.343 60.000 0.00 0.00 39.67 4.70
160 161 0.731855 GGGGAAGAAGTCGTCGTTCG 60.732 60.000 0.00 0.00 41.41 3.95
161 162 0.731855 CGGGGAAGAAGTCGTCGTTC 60.732 60.000 0.00 0.00 0.00 3.95
162 163 1.174712 TCGGGGAAGAAGTCGTCGTT 61.175 55.000 0.00 0.00 0.00 3.85
163 164 1.601759 TCGGGGAAGAAGTCGTCGT 60.602 57.895 0.00 0.00 0.00 4.34
164 165 1.154073 GTCGGGGAAGAAGTCGTCG 60.154 63.158 0.00 0.00 0.00 5.12
165 166 1.214853 GGTCGGGGAAGAAGTCGTC 59.785 63.158 0.00 0.00 0.00 4.20
166 167 1.228800 AGGTCGGGGAAGAAGTCGT 60.229 57.895 0.00 0.00 0.00 4.34
167 168 1.511768 GAGGTCGGGGAAGAAGTCG 59.488 63.158 0.00 0.00 0.00 4.18
168 169 1.511768 CGAGGTCGGGGAAGAAGTC 59.488 63.158 0.00 0.00 35.37 3.01
169 170 3.696084 CGAGGTCGGGGAAGAAGT 58.304 61.111 0.00 0.00 35.37 3.01
179 180 3.966026 GACGAGGTTGCCGAGGTCG 62.966 68.421 0.00 0.00 39.44 4.79
180 181 2.126031 GACGAGGTTGCCGAGGTC 60.126 66.667 0.00 0.00 0.00 3.85
181 182 3.692406 GGACGAGGTTGCCGAGGT 61.692 66.667 0.00 0.00 0.00 3.85
182 183 3.358076 GAGGACGAGGTTGCCGAGG 62.358 68.421 0.00 0.00 0.00 4.63
183 184 2.182030 GAGGACGAGGTTGCCGAG 59.818 66.667 0.00 0.00 0.00 4.63
184 185 3.744719 CGAGGACGAGGTTGCCGA 61.745 66.667 0.00 0.00 42.66 5.54
185 186 3.744719 TCGAGGACGAGGTTGCCG 61.745 66.667 0.00 0.00 43.81 5.69
195 196 2.202756 GCCCATGTCGTCGAGGAC 60.203 66.667 27.00 27.00 37.45 3.85
196 197 3.822192 CGCCCATGTCGTCGAGGA 61.822 66.667 3.17 3.17 0.00 3.71
197 198 3.822192 TCGCCCATGTCGTCGAGG 61.822 66.667 0.00 0.00 0.00 4.63
198 199 2.579787 GTCGCCCATGTCGTCGAG 60.580 66.667 0.00 0.00 0.00 4.04
199 200 2.921797 TTGTCGCCCATGTCGTCGA 61.922 57.895 0.00 0.00 0.00 4.20
200 201 2.431771 TTGTCGCCCATGTCGTCG 60.432 61.111 4.83 0.00 0.00 5.12
201 202 2.726691 CGTTGTCGCCCATGTCGTC 61.727 63.158 4.83 0.93 0.00 4.20
202 203 2.736995 CGTTGTCGCCCATGTCGT 60.737 61.111 4.83 0.00 0.00 4.34
203 204 2.726691 GACGTTGTCGCCCATGTCG 61.727 63.158 0.00 0.00 41.18 4.35
204 205 1.225376 TTGACGTTGTCGCCCATGTC 61.225 55.000 0.00 0.00 41.18 3.06
205 206 1.227704 TTGACGTTGTCGCCCATGT 60.228 52.632 0.00 0.00 41.18 3.21
206 207 1.206578 GTTGACGTTGTCGCCCATG 59.793 57.895 0.00 0.00 41.18 3.66
207 208 2.314647 CGTTGACGTTGTCGCCCAT 61.315 57.895 0.00 0.00 41.18 4.00
208 209 2.962786 CGTTGACGTTGTCGCCCA 60.963 61.111 0.00 0.00 41.18 5.36
209 210 4.364409 GCGTTGACGTTGTCGCCC 62.364 66.667 16.91 0.00 42.33 6.13
211 212 4.696172 CGGCGTTGACGTTGTCGC 62.696 66.667 18.60 18.60 46.42 5.19
212 213 3.025743 TCGGCGTTGACGTTGTCG 61.026 61.111 6.85 0.00 42.22 4.35
213 214 2.542896 GTCGGCGTTGACGTTGTC 59.457 61.111 6.85 0.00 42.22 3.18
238 239 1.669760 ACATACGGTGCAACGGGTG 60.670 57.895 30.15 26.38 42.06 4.61
239 240 1.669760 CACATACGGTGCAACGGGT 60.670 57.895 30.15 20.11 42.06 5.28
240 241 3.173853 CACATACGGTGCAACGGG 58.826 61.111 30.15 19.41 42.06 5.28
248 249 5.011125 CAGGAAGGATAGAATCACATACGGT 59.989 44.000 0.00 0.00 0.00 4.83
249 250 5.011125 ACAGGAAGGATAGAATCACATACGG 59.989 44.000 0.00 0.00 0.00 4.02
250 251 6.090483 ACAGGAAGGATAGAATCACATACG 57.910 41.667 0.00 0.00 0.00 3.06
251 252 6.642950 CGAACAGGAAGGATAGAATCACATAC 59.357 42.308 0.00 0.00 0.00 2.39
252 253 6.549736 TCGAACAGGAAGGATAGAATCACATA 59.450 38.462 0.00 0.00 0.00 2.29
253 254 5.363868 TCGAACAGGAAGGATAGAATCACAT 59.636 40.000 0.00 0.00 0.00 3.21
254 255 4.709886 TCGAACAGGAAGGATAGAATCACA 59.290 41.667 0.00 0.00 0.00 3.58
255 256 5.067936 TCTCGAACAGGAAGGATAGAATCAC 59.932 44.000 0.00 0.00 0.00 3.06
256 257 5.201243 TCTCGAACAGGAAGGATAGAATCA 58.799 41.667 0.00 0.00 0.00 2.57
257 258 5.776173 TCTCGAACAGGAAGGATAGAATC 57.224 43.478 0.00 0.00 0.00 2.52
258 259 5.048364 CGATCTCGAACAGGAAGGATAGAAT 60.048 44.000 0.00 0.00 43.02 2.40
259 260 4.276183 CGATCTCGAACAGGAAGGATAGAA 59.724 45.833 0.00 0.00 43.02 2.10
260 261 3.815962 CGATCTCGAACAGGAAGGATAGA 59.184 47.826 0.00 0.00 43.02 1.98
261 262 3.566322 ACGATCTCGAACAGGAAGGATAG 59.434 47.826 6.60 0.00 43.02 2.08
262 263 3.315470 CACGATCTCGAACAGGAAGGATA 59.685 47.826 6.60 0.00 43.02 2.59
263 264 2.099921 CACGATCTCGAACAGGAAGGAT 59.900 50.000 6.60 0.00 43.02 3.24
264 265 1.472878 CACGATCTCGAACAGGAAGGA 59.527 52.381 6.60 0.00 43.02 3.36
265 266 1.469940 CCACGATCTCGAACAGGAAGG 60.470 57.143 6.60 0.00 43.02 3.46
266 267 1.202582 ACCACGATCTCGAACAGGAAG 59.797 52.381 6.60 0.00 43.02 3.46
267 268 1.254026 ACCACGATCTCGAACAGGAA 58.746 50.000 6.60 0.00 43.02 3.36
268 269 2.118313 TACCACGATCTCGAACAGGA 57.882 50.000 6.60 0.00 43.02 3.86
269 270 2.933495 TTACCACGATCTCGAACAGG 57.067 50.000 6.60 5.32 43.02 4.00
270 271 5.347635 TGAATTTTACCACGATCTCGAACAG 59.652 40.000 6.60 0.00 43.02 3.16
271 272 5.231702 TGAATTTTACCACGATCTCGAACA 58.768 37.500 6.60 0.00 43.02 3.18
272 273 5.773239 TGAATTTTACCACGATCTCGAAC 57.227 39.130 6.60 0.00 43.02 3.95
273 274 5.220586 GCATGAATTTTACCACGATCTCGAA 60.221 40.000 6.60 0.00 43.02 3.71
274 275 4.270084 GCATGAATTTTACCACGATCTCGA 59.730 41.667 6.60 0.00 43.02 4.04
275 276 4.271049 AGCATGAATTTTACCACGATCTCG 59.729 41.667 0.00 0.00 46.33 4.04
276 277 5.741388 AGCATGAATTTTACCACGATCTC 57.259 39.130 0.00 0.00 0.00 2.75
277 278 5.882557 AGAAGCATGAATTTTACCACGATCT 59.117 36.000 0.00 0.00 0.00 2.75
278 279 6.124088 AGAAGCATGAATTTTACCACGATC 57.876 37.500 0.00 0.00 0.00 3.69
279 280 6.238484 GCTAGAAGCATGAATTTTACCACGAT 60.238 38.462 0.00 0.00 41.89 3.73
280 281 5.064707 GCTAGAAGCATGAATTTTACCACGA 59.935 40.000 0.00 0.00 41.89 4.35
281 282 5.266242 GCTAGAAGCATGAATTTTACCACG 58.734 41.667 0.00 0.00 41.89 4.94
296 297 1.414181 TCTAGGGCACATGCTAGAAGC 59.586 52.381 3.48 0.00 42.82 3.86
297 298 3.070734 ACATCTAGGGCACATGCTAGAAG 59.929 47.826 10.61 9.27 41.70 2.85
298 299 3.041211 ACATCTAGGGCACATGCTAGAA 58.959 45.455 10.61 0.00 41.70 2.10
299 300 2.366590 CACATCTAGGGCACATGCTAGA 59.633 50.000 9.39 9.39 41.70 2.43
300 301 2.366590 TCACATCTAGGGCACATGCTAG 59.633 50.000 3.48 0.00 41.70 3.42
301 302 2.397597 TCACATCTAGGGCACATGCTA 58.602 47.619 3.48 0.00 41.70 3.49
302 303 1.206878 TCACATCTAGGGCACATGCT 58.793 50.000 3.48 0.00 41.70 3.79
303 304 2.267174 ATCACATCTAGGGCACATGC 57.733 50.000 0.00 0.00 41.14 4.06
304 305 7.333323 TGAATATATCACATCTAGGGCACATG 58.667 38.462 0.00 0.00 31.50 3.21
305 306 7.500629 TGAATATATCACATCTAGGGCACAT 57.499 36.000 0.00 0.00 31.50 3.21
306 307 6.933514 TGAATATATCACATCTAGGGCACA 57.066 37.500 0.00 0.00 31.50 4.57
307 308 7.710044 CAGATGAATATATCACATCTAGGGCAC 59.290 40.741 23.07 0.00 45.61 5.01
308 309 7.634429 GCAGATGAATATATCACATCTAGGGCA 60.634 40.741 23.07 0.00 45.61 5.36
309 310 6.705381 GCAGATGAATATATCACATCTAGGGC 59.295 42.308 23.07 20.02 45.61 5.19
310 311 8.020777 AGCAGATGAATATATCACATCTAGGG 57.979 38.462 23.07 16.61 45.61 3.53
313 314 9.978044 GCATAGCAGATGAATATATCACATCTA 57.022 33.333 23.07 14.77 45.61 1.98
315 316 8.890124 AGCATAGCAGATGAATATATCACATC 57.110 34.615 17.69 17.69 41.93 3.06
316 317 9.984190 CTAGCATAGCAGATGAATATATCACAT 57.016 33.333 2.96 5.43 41.93 3.21
317 318 8.975295 ACTAGCATAGCAGATGAATATATCACA 58.025 33.333 2.96 0.00 44.39 3.58
318 319 9.814899 AACTAGCATAGCAGATGAATATATCAC 57.185 33.333 2.96 0.00 44.39 3.06
320 321 9.179552 CGAACTAGCATAGCAGATGAATATATC 57.820 37.037 2.96 0.00 44.39 1.63
321 322 7.651304 GCGAACTAGCATAGCAGATGAATATAT 59.349 37.037 2.96 0.00 44.39 0.86
322 323 6.975197 GCGAACTAGCATAGCAGATGAATATA 59.025 38.462 2.96 0.00 44.39 0.86
323 324 5.809562 GCGAACTAGCATAGCAGATGAATAT 59.190 40.000 2.96 0.00 44.39 1.28
324 325 5.164233 GCGAACTAGCATAGCAGATGAATA 58.836 41.667 2.96 0.00 44.39 1.75
325 326 3.993081 GCGAACTAGCATAGCAGATGAAT 59.007 43.478 2.96 0.00 44.39 2.57
326 327 3.181476 TGCGAACTAGCATAGCAGATGAA 60.181 43.478 2.96 0.00 44.39 2.57
327 328 2.362077 TGCGAACTAGCATAGCAGATGA 59.638 45.455 2.96 0.00 44.39 2.92
328 329 2.747436 TGCGAACTAGCATAGCAGATG 58.253 47.619 0.68 0.00 44.39 2.90
337 338 7.710907 AGATTAAACTAATCATGCGAACTAGCA 59.289 33.333 8.66 0.00 45.41 3.49
338 339 8.077836 AGATTAAACTAATCATGCGAACTAGC 57.922 34.615 8.66 0.00 45.41 3.42
339 340 9.469807 AGAGATTAAACTAATCATGCGAACTAG 57.530 33.333 8.66 0.00 45.41 2.57
340 341 9.249457 CAGAGATTAAACTAATCATGCGAACTA 57.751 33.333 8.66 0.00 45.41 2.24
341 342 7.254590 GCAGAGATTAAACTAATCATGCGAACT 60.255 37.037 15.10 0.00 45.41 3.01
342 343 6.848296 GCAGAGATTAAACTAATCATGCGAAC 59.152 38.462 15.10 0.00 45.41 3.95
343 344 6.948353 GCAGAGATTAAACTAATCATGCGAA 58.052 36.000 15.10 0.00 45.41 4.70
344 345 6.530913 GCAGAGATTAAACTAATCATGCGA 57.469 37.500 15.10 0.00 45.41 5.10
347 348 7.012138 ACAGCAGCAGAGATTAAACTAATCATG 59.988 37.037 8.66 7.75 45.41 3.07
348 349 7.012138 CACAGCAGCAGAGATTAAACTAATCAT 59.988 37.037 8.66 0.00 45.41 2.45
349 350 6.314648 CACAGCAGCAGAGATTAAACTAATCA 59.685 38.462 8.66 0.00 45.41 2.57
350 351 6.238320 CCACAGCAGCAGAGATTAAACTAATC 60.238 42.308 0.00 0.00 43.77 1.75
351 352 5.587844 CCACAGCAGCAGAGATTAAACTAAT 59.412 40.000 0.00 0.00 0.00 1.73
352 353 4.937620 CCACAGCAGCAGAGATTAAACTAA 59.062 41.667 0.00 0.00 0.00 2.24
353 354 4.020218 ACCACAGCAGCAGAGATTAAACTA 60.020 41.667 0.00 0.00 0.00 2.24
354 355 3.244700 ACCACAGCAGCAGAGATTAAACT 60.245 43.478 0.00 0.00 0.00 2.66
355 356 3.077359 ACCACAGCAGCAGAGATTAAAC 58.923 45.455 0.00 0.00 0.00 2.01
356 357 3.244526 TGACCACAGCAGCAGAGATTAAA 60.245 43.478 0.00 0.00 0.00 1.52
357 358 2.302733 TGACCACAGCAGCAGAGATTAA 59.697 45.455 0.00 0.00 0.00 1.40
358 359 1.901833 TGACCACAGCAGCAGAGATTA 59.098 47.619 0.00 0.00 0.00 1.75
359 360 0.689055 TGACCACAGCAGCAGAGATT 59.311 50.000 0.00 0.00 0.00 2.40
360 361 0.910338 ATGACCACAGCAGCAGAGAT 59.090 50.000 0.00 0.00 0.00 2.75
361 362 0.036671 CATGACCACAGCAGCAGAGA 60.037 55.000 0.00 0.00 0.00 3.10
362 363 0.036671 TCATGACCACAGCAGCAGAG 60.037 55.000 0.00 0.00 0.00 3.35
363 364 0.616891 ATCATGACCACAGCAGCAGA 59.383 50.000 0.00 0.00 0.00 4.26
364 365 1.460504 AATCATGACCACAGCAGCAG 58.539 50.000 0.00 0.00 0.00 4.24
365 366 1.913778 AAATCATGACCACAGCAGCA 58.086 45.000 0.00 0.00 0.00 4.41
366 367 3.881688 AGATAAATCATGACCACAGCAGC 59.118 43.478 0.00 0.00 0.00 5.25
367 368 7.228108 ACATAAGATAAATCATGACCACAGCAG 59.772 37.037 0.00 0.00 0.00 4.24
368 369 7.056006 ACATAAGATAAATCATGACCACAGCA 58.944 34.615 0.00 0.00 0.00 4.41
369 370 7.502120 ACATAAGATAAATCATGACCACAGC 57.498 36.000 0.00 0.00 0.00 4.40
390 391 9.760077 ACTACGAGATTTAATCCGAATAAACAT 57.240 29.630 17.75 1.84 0.00 2.71
397 398 8.545420 GCAAATTACTACGAGATTTAATCCGAA 58.455 33.333 17.75 6.53 0.00 4.30
398 399 7.924412 AGCAAATTACTACGAGATTTAATCCGA 59.076 33.333 17.75 5.77 0.00 4.55
399 400 8.073355 AGCAAATTACTACGAGATTTAATCCG 57.927 34.615 12.00 12.00 0.00 4.18
400 401 9.042008 TGAGCAAATTACTACGAGATTTAATCC 57.958 33.333 0.78 0.00 0.00 3.01
417 418 9.205513 AGGGAAGATGTAAAATATGAGCAAATT 57.794 29.630 0.00 0.00 0.00 1.82
418 419 8.636213 CAGGGAAGATGTAAAATATGAGCAAAT 58.364 33.333 0.00 0.00 0.00 2.32
419 420 7.615365 ACAGGGAAGATGTAAAATATGAGCAAA 59.385 33.333 0.00 0.00 0.00 3.68
420 421 7.067372 CACAGGGAAGATGTAAAATATGAGCAA 59.933 37.037 0.00 0.00 0.00 3.91
421 422 6.543465 CACAGGGAAGATGTAAAATATGAGCA 59.457 38.462 0.00 0.00 0.00 4.26
422 423 6.543831 ACACAGGGAAGATGTAAAATATGAGC 59.456 38.462 0.00 0.00 0.00 4.26
423 424 8.400947 CAACACAGGGAAGATGTAAAATATGAG 58.599 37.037 0.00 0.00 0.00 2.90
424 425 7.888021 ACAACACAGGGAAGATGTAAAATATGA 59.112 33.333 0.00 0.00 0.00 2.15
425 426 8.055279 ACAACACAGGGAAGATGTAAAATATG 57.945 34.615 0.00 0.00 0.00 1.78
426 427 9.747898 TTACAACACAGGGAAGATGTAAAATAT 57.252 29.630 0.00 0.00 32.20 1.28
427 428 9.747898 ATTACAACACAGGGAAGATGTAAAATA 57.252 29.630 0.00 0.00 36.97 1.40
428 429 8.522830 CATTACAACACAGGGAAGATGTAAAAT 58.477 33.333 0.00 0.00 36.97 1.82
429 430 7.721842 TCATTACAACACAGGGAAGATGTAAAA 59.278 33.333 0.00 0.00 36.97 1.52
430 431 7.227873 TCATTACAACACAGGGAAGATGTAAA 58.772 34.615 0.00 0.00 36.97 2.01
431 432 6.774673 TCATTACAACACAGGGAAGATGTAA 58.225 36.000 0.00 0.00 37.57 2.41
432 433 6.367374 TCATTACAACACAGGGAAGATGTA 57.633 37.500 0.00 0.00 0.00 2.29
433 434 5.241403 TCATTACAACACAGGGAAGATGT 57.759 39.130 0.00 0.00 0.00 3.06
434 435 5.882000 TCATCATTACAACACAGGGAAGATG 59.118 40.000 0.00 0.00 0.00 2.90
435 436 6.065976 TCATCATTACAACACAGGGAAGAT 57.934 37.500 0.00 0.00 0.00 2.40
436 437 5.497464 TCATCATTACAACACAGGGAAGA 57.503 39.130 0.00 0.00 0.00 2.87
437 438 5.882000 TCATCATCATTACAACACAGGGAAG 59.118 40.000 0.00 0.00 0.00 3.46
438 439 5.814481 TCATCATCATTACAACACAGGGAA 58.186 37.500 0.00 0.00 0.00 3.97
439 440 5.434182 TCATCATCATTACAACACAGGGA 57.566 39.130 0.00 0.00 0.00 4.20
440 441 6.513806 TTTCATCATCATTACAACACAGGG 57.486 37.500 0.00 0.00 0.00 4.45
441 442 6.908820 CGATTTCATCATCATTACAACACAGG 59.091 38.462 0.00 0.00 0.00 4.00
442 443 6.908820 CCGATTTCATCATCATTACAACACAG 59.091 38.462 0.00 0.00 0.00 3.66
443 444 6.677675 GCCGATTTCATCATCATTACAACACA 60.678 38.462 0.00 0.00 0.00 3.72
444 445 5.682862 GCCGATTTCATCATCATTACAACAC 59.317 40.000 0.00 0.00 0.00 3.32
562 569 4.018050 AGCAGAAGTTTGAGGGTAATGGAT 60.018 41.667 0.00 0.00 0.00 3.41
624 738 1.833630 TGAGAGGGCAATAGACACCTG 59.166 52.381 0.00 0.00 32.42 4.00
664 780 9.817809 GGTTAGAACATCTTATAGTTGTGATCA 57.182 33.333 0.00 0.00 29.34 2.92
733 968 6.877611 ACAAACGGTCTTGAATAAGTGAAT 57.122 33.333 9.11 0.00 35.38 2.57
740 975 5.471556 TGGACTACAAACGGTCTTGAATA 57.528 39.130 9.11 0.00 33.46 1.75
744 979 5.872617 TCAATATGGACTACAAACGGTCTTG 59.127 40.000 0.00 0.00 33.46 3.02
745 980 6.045072 TCAATATGGACTACAAACGGTCTT 57.955 37.500 0.00 0.00 33.46 3.01
748 983 8.974060 ATATTTCAATATGGACTACAAACGGT 57.026 30.769 0.00 0.00 30.67 4.83
785 1020 6.785963 ACTTCCTCCTCGGGTTCATAAATATA 59.214 38.462 0.00 0.00 0.00 0.86
790 1025 2.829023 ACTTCCTCCTCGGGTTCATAA 58.171 47.619 0.00 0.00 0.00 1.90
793 1028 1.076677 AGTACTTCCTCCTCGGGTTCA 59.923 52.381 0.00 0.00 0.00 3.18
798 1033 2.099427 GCTGTTAGTACTTCCTCCTCGG 59.901 54.545 0.00 0.00 0.00 4.63
801 1036 3.764972 GACTGCTGTTAGTACTTCCTCCT 59.235 47.826 0.00 0.00 0.00 3.69
841 1078 8.442374 AGTAGACAGAACTTAACCCCAAATTTA 58.558 33.333 0.00 0.00 0.00 1.40
910 1149 5.185635 ACACACATGGGAATAATTTGAGTGG 59.814 40.000 0.00 0.00 34.54 4.00
1021 1261 2.976903 GGATGGCATGCCGCTCTC 60.977 66.667 30.87 22.40 41.91 3.20
1026 1266 3.214123 CCACAGGATGGCATGCCG 61.214 66.667 30.87 18.73 43.24 5.69
1354 1603 2.614779 CAAAGCATCTCTCGAGCTTGA 58.385 47.619 7.81 2.99 46.95 3.02
1495 1750 1.602377 CAAACGTGTGACTTCCCTTCC 59.398 52.381 0.00 0.00 0.00 3.46
1496 1751 1.002792 GCAAACGTGTGACTTCCCTTC 60.003 52.381 10.72 0.00 0.00 3.46
1725 1986 0.522626 TGTTCACCATTGCATGAGCG 59.477 50.000 0.00 0.00 46.23 5.03
2027 7133 0.678048 GGACCAATCACCAGAGCCAC 60.678 60.000 0.00 0.00 0.00 5.01
2224 7336 2.648059 CGAAAGAATGGCCTCCAGAAT 58.352 47.619 3.32 0.00 36.75 2.40
2247 7359 2.049433 CGGGTGTGTGTCTCGGTC 60.049 66.667 0.00 0.00 0.00 4.79
2286 7398 6.652481 TCTCTTCAAACAGGCTAAATCTTGAG 59.348 38.462 0.00 0.00 0.00 3.02
2364 7481 3.920231 AGCTCATCATCAGTTTAGCCA 57.080 42.857 0.00 0.00 0.00 4.75
2366 7483 4.630111 AGCTAGCTCATCATCAGTTTAGC 58.370 43.478 12.68 0.00 0.00 3.09
2367 7484 7.600960 TCATAGCTAGCTCATCATCAGTTTAG 58.399 38.462 23.26 0.00 0.00 1.85
2368 7485 7.530426 TCATAGCTAGCTCATCATCAGTTTA 57.470 36.000 23.26 0.00 0.00 2.01
2370 7487 6.416631 TTCATAGCTAGCTCATCATCAGTT 57.583 37.500 23.26 0.00 0.00 3.16
2371 7488 6.041865 AGTTTCATAGCTAGCTCATCATCAGT 59.958 38.462 23.26 0.70 0.00 3.41
2372 7489 6.457355 AGTTTCATAGCTAGCTCATCATCAG 58.543 40.000 23.26 3.58 0.00 2.90
2373 7490 6.416631 AGTTTCATAGCTAGCTCATCATCA 57.583 37.500 23.26 1.17 0.00 3.07
2374 7491 7.601856 AGTAGTTTCATAGCTAGCTCATCATC 58.398 38.462 23.26 9.41 0.00 2.92
2375 7492 7.537596 AGTAGTTTCATAGCTAGCTCATCAT 57.462 36.000 23.26 6.16 0.00 2.45
2377 7494 8.106247 AGTAGTAGTTTCATAGCTAGCTCATC 57.894 38.462 23.26 7.28 0.00 2.92
2379 7496 7.991460 TGTAGTAGTAGTTTCATAGCTAGCTCA 59.009 37.037 23.26 8.45 0.00 4.26
2382 7499 7.592164 GCTTGTAGTAGTAGTTTCATAGCTAGC 59.408 40.741 6.62 6.62 0.00 3.42
2385 7502 7.648039 AGCTTGTAGTAGTAGTTTCATAGCT 57.352 36.000 0.00 0.00 0.00 3.32
2386 7503 9.798994 TTTAGCTTGTAGTAGTAGTTTCATAGC 57.201 33.333 0.00 0.00 0.00 2.97
2390 7507 9.856488 CTGATTTAGCTTGTAGTAGTAGTTTCA 57.144 33.333 0.00 0.00 0.00 2.69
2486 7603 3.845781 AGAAGATCACCACAACAGTGT 57.154 42.857 0.00 0.00 39.07 3.55
2612 7729 2.357009 GCTGGACATCAAGTGGCTATTG 59.643 50.000 0.00 0.00 35.58 1.90
2709 7827 3.700538 ACCTGCAACAACCACATGATAT 58.299 40.909 0.00 0.00 0.00 1.63
2714 7832 1.616159 GGTACCTGCAACAACCACAT 58.384 50.000 4.06 0.00 32.04 3.21
2729 7847 8.974060 TCCTTTCACATAATCAATAAGGGTAC 57.026 34.615 0.00 0.00 33.25 3.34
2813 8017 7.186021 AGTGAAACCGTTTAGTCATACAAAG 57.814 36.000 0.00 0.00 37.80 2.77
2818 8022 9.491675 TCAAATAAGTGAAACCGTTTAGTCATA 57.508 29.630 0.00 0.00 37.80 2.15
2902 8107 3.680789 GCATTCAGCAACGGTGTAATAC 58.319 45.455 0.66 0.00 44.79 1.89
3039 8244 3.065510 CGTCCACCTACTATCACACAGAG 59.934 52.174 0.00 0.00 0.00 3.35
3040 8245 3.014623 CGTCCACCTACTATCACACAGA 58.985 50.000 0.00 0.00 0.00 3.41
3091 8298 8.728337 AATCCTTGATGACATCCATATATTCG 57.272 34.615 12.90 0.00 35.17 3.34
3174 8381 2.806608 TGGTGAACGTCTTAGTGACC 57.193 50.000 0.00 0.00 42.49 4.02
3295 8503 5.309638 AGTTCTTGCTTTTAAGGAGGTCTC 58.690 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.