Multiple sequence alignment - TraesCS1A01G383700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G383700 chr1A 100.000 4701 0 0 1 4701 554082571 554087271 0.000000e+00 8682
1 TraesCS1A01G383700 chr1A 95.741 1221 49 3 2025 3245 534869177 534867960 0.000000e+00 1964
2 TraesCS1A01G383700 chr5A 96.053 1216 47 1 2025 3240 697708224 697709438 0.000000e+00 1978
3 TraesCS1A01G383700 chr5A 96.685 181 3 2 1529 1709 488019088 488019265 9.890000e-77 298
4 TraesCS1A01G383700 chr5A 98.193 166 3 0 1544 1709 566033421 566033586 1.650000e-74 291
5 TraesCS1A01G383700 chr5A 98.182 165 3 0 1545 1709 566793381 566793545 5.950000e-74 289
6 TraesCS1A01G383700 chr7A 95.902 1220 48 2 2025 3243 661835414 661836632 0.000000e+00 1975
7 TraesCS1A01G383700 chr7A 95.898 1219 49 1 2025 3243 24939122 24940339 0.000000e+00 1973
8 TraesCS1A01G383700 chr7A 95.595 1226 52 2 2025 3249 276128854 276127630 0.000000e+00 1964
9 TraesCS1A01G383700 chr7A 95.806 1216 50 1 2025 3240 88445216 88446430 0.000000e+00 1962
10 TraesCS1A01G383700 chr7A 95.734 1219 50 2 2025 3243 705059811 705061027 0.000000e+00 1962
11 TraesCS1A01G383700 chr7A 95.734 1219 48 4 2025 3243 83149220 83150434 0.000000e+00 1960
12 TraesCS1A01G383700 chr7A 95.290 552 25 1 1 551 736317651 736318202 0.000000e+00 874
13 TraesCS1A01G383700 chr7A 94.834 542 28 0 1 542 711587080 711586539 0.000000e+00 846
14 TraesCS1A01G383700 chr7A 95.604 182 4 4 1536 1713 40718779 40718598 5.950000e-74 289
15 TraesCS1A01G383700 chr4A 95.816 1219 49 2 2025 3243 478415850 478414634 0.000000e+00 1967
16 TraesCS1A01G383700 chr4A 94.669 544 28 1 1 543 593294407 593294950 0.000000e+00 843
17 TraesCS1A01G383700 chr4A 98.802 167 2 0 1543 1709 540055087 540055253 9.890000e-77 298
18 TraesCS1A01G383700 chr4A 96.648 179 6 0 1541 1719 606368835 606368657 9.890000e-77 298
19 TraesCS1A01G383700 chr1D 85.340 1337 119 31 3415 4701 462301514 462302823 0.000000e+00 1312
20 TraesCS1A01G383700 chr1D 94.545 550 28 2 1 549 300665171 300665719 0.000000e+00 848
21 TraesCS1A01G383700 chr1D 94.161 548 30 2 1 547 267044 267590 0.000000e+00 833
22 TraesCS1A01G383700 chr1D 95.785 427 10 5 990 1413 462298708 462299129 0.000000e+00 682
23 TraesCS1A01G383700 chr1D 81.900 558 69 20 4159 4701 462307746 462308286 4.320000e-120 442
24 TraesCS1A01G383700 chr1D 97.740 177 4 0 3242 3418 462301182 462301358 5.910000e-79 305
25 TraesCS1A01G383700 chr1D 93.333 195 7 4 733 922 462298452 462298645 2.770000e-72 283
26 TraesCS1A01G383700 chr1D 90.000 210 16 3 1826 2033 462300496 462300702 2.790000e-67 267
27 TraesCS1A01G383700 chr1D 90.341 176 5 4 571 737 462298124 462298296 2.200000e-53 220
28 TraesCS1A01G383700 chr1B 91.815 672 38 8 3242 3899 637370136 637370804 0.000000e+00 920
29 TraesCS1A01G383700 chr1B 90.869 449 20 17 990 1417 637368560 637369008 2.440000e-162 582
30 TraesCS1A01G383700 chr1B 91.630 227 17 2 1809 2033 637369052 637369278 3.530000e-81 313
31 TraesCS1A01G383700 chr1B 87.019 208 27 0 4494 4701 637370813 637371020 7.860000e-58 235
32 TraesCS1A01G383700 chr7D 95.247 547 25 1 1 546 614244403 614243857 0.000000e+00 865
33 TraesCS1A01G383700 chr6D 94.555 551 24 4 1 550 32369229 32368684 0.000000e+00 846
34 TraesCS1A01G383700 chr5D 94.224 554 26 2 1 548 14737605 14738158 0.000000e+00 841
35 TraesCS1A01G383700 chr4D 93.863 554 31 3 1 552 494043714 494043162 0.000000e+00 832
36 TraesCS1A01G383700 chr3A 84.270 445 47 19 990 1418 647499751 647499314 3.390000e-111 412
37 TraesCS1A01G383700 chr3A 82.805 442 49 22 990 1426 647510211 647509792 2.070000e-98 370
38 TraesCS1A01G383700 chr3A 97.714 175 2 2 1538 1710 113357792 113357966 2.750000e-77 300
39 TraesCS1A01G383700 chr3A 98.788 165 2 0 1545 1709 710789824 710789660 1.280000e-75 294
40 TraesCS1A01G383700 chr3B 83.973 443 50 17 990 1417 673098197 673097761 5.660000e-109 405
41 TraesCS1A01G383700 chr3B 83.765 425 51 11 989 1411 673142106 673141698 2.050000e-103 387
42 TraesCS1A01G383700 chr3B 83.014 418 40 17 992 1409 673106516 673106130 2.690000e-92 350
43 TraesCS1A01G383700 chr3B 82.500 200 32 2 3509 3708 673095022 673094826 6.250000e-39 172
44 TraesCS1A01G383700 chr3B 85.030 167 25 0 3542 3708 673140471 673140305 2.250000e-38 171
45 TraesCS1A01G383700 chr3D 83.710 442 54 15 990 1418 511444301 511443865 7.330000e-108 401
46 TraesCS1A01G383700 chr3D 82.910 433 54 13 995 1422 511451390 511450973 5.750000e-99 372
47 TraesCS1A01G383700 chr3D 82.500 200 32 2 3509 3708 511442017 511441821 6.250000e-39 172
48 TraesCS1A01G383700 chr3D 86.066 122 17 0 3242 3363 511442237 511442116 1.060000e-26 132
49 TraesCS1A01G383700 chr2A 98.182 165 3 0 1545 1709 43302069 43301905 5.950000e-74 289


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G383700 chr1A 554082571 554087271 4700 False 8682.0 8682 100.000000 1 4701 1 chr1A.!!$F1 4700
1 TraesCS1A01G383700 chr1A 534867960 534869177 1217 True 1964.0 1964 95.741000 2025 3245 1 chr1A.!!$R1 1220
2 TraesCS1A01G383700 chr5A 697708224 697709438 1214 False 1978.0 1978 96.053000 2025 3240 1 chr5A.!!$F4 1215
3 TraesCS1A01G383700 chr7A 661835414 661836632 1218 False 1975.0 1975 95.902000 2025 3243 1 chr7A.!!$F4 1218
4 TraesCS1A01G383700 chr7A 24939122 24940339 1217 False 1973.0 1973 95.898000 2025 3243 1 chr7A.!!$F1 1218
5 TraesCS1A01G383700 chr7A 276127630 276128854 1224 True 1964.0 1964 95.595000 2025 3249 1 chr7A.!!$R2 1224
6 TraesCS1A01G383700 chr7A 88445216 88446430 1214 False 1962.0 1962 95.806000 2025 3240 1 chr7A.!!$F3 1215
7 TraesCS1A01G383700 chr7A 705059811 705061027 1216 False 1962.0 1962 95.734000 2025 3243 1 chr7A.!!$F5 1218
8 TraesCS1A01G383700 chr7A 83149220 83150434 1214 False 1960.0 1960 95.734000 2025 3243 1 chr7A.!!$F2 1218
9 TraesCS1A01G383700 chr7A 736317651 736318202 551 False 874.0 874 95.290000 1 551 1 chr7A.!!$F6 550
10 TraesCS1A01G383700 chr7A 711586539 711587080 541 True 846.0 846 94.834000 1 542 1 chr7A.!!$R3 541
11 TraesCS1A01G383700 chr4A 478414634 478415850 1216 True 1967.0 1967 95.816000 2025 3243 1 chr4A.!!$R1 1218
12 TraesCS1A01G383700 chr4A 593294407 593294950 543 False 843.0 843 94.669000 1 543 1 chr4A.!!$F2 542
13 TraesCS1A01G383700 chr1D 300665171 300665719 548 False 848.0 848 94.545000 1 549 1 chr1D.!!$F2 548
14 TraesCS1A01G383700 chr1D 267044 267590 546 False 833.0 833 94.161000 1 547 1 chr1D.!!$F1 546
15 TraesCS1A01G383700 chr1D 462298124 462302823 4699 False 511.5 1312 92.089833 571 4701 6 chr1D.!!$F4 4130
16 TraesCS1A01G383700 chr1D 462307746 462308286 540 False 442.0 442 81.900000 4159 4701 1 chr1D.!!$F3 542
17 TraesCS1A01G383700 chr1B 637368560 637371020 2460 False 512.5 920 90.333250 990 4701 4 chr1B.!!$F1 3711
18 TraesCS1A01G383700 chr7D 614243857 614244403 546 True 865.0 865 95.247000 1 546 1 chr7D.!!$R1 545
19 TraesCS1A01G383700 chr6D 32368684 32369229 545 True 846.0 846 94.555000 1 550 1 chr6D.!!$R1 549
20 TraesCS1A01G383700 chr5D 14737605 14738158 553 False 841.0 841 94.224000 1 548 1 chr5D.!!$F1 547
21 TraesCS1A01G383700 chr4D 494043162 494043714 552 True 832.0 832 93.863000 1 552 1 chr4D.!!$R1 551
22 TraesCS1A01G383700 chr3B 673094826 673098197 3371 True 288.5 405 83.236500 990 3708 2 chr3B.!!$R2 2718
23 TraesCS1A01G383700 chr3B 673140305 673142106 1801 True 279.0 387 84.397500 989 3708 2 chr3B.!!$R3 2719
24 TraesCS1A01G383700 chr3D 511441821 511444301 2480 True 235.0 401 84.092000 990 3708 3 chr3D.!!$R2 2718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 1122 0.036199 AACGGGTAGCACGGCATAAA 60.036 50.0 7.53 0.0 35.23 1.40 F
1695 2003 0.029989 GAGGGGGTAAGAGGGACCAT 60.030 60.0 0.00 0.0 38.86 3.55 F
2661 6269 0.174162 GGCTTTTCATTGCTCGCCAT 59.826 50.0 0.00 0.0 37.48 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 3280 0.543749 GCTGGCTGAGGTGGAAGTAT 59.456 55.0 0.00 0.0 0.00 2.12 R
3140 6749 0.101759 CCTAGGACGCCGAAAATCGA 59.898 55.0 1.05 0.0 43.74 3.59 R
4294 8098 0.041090 GGGATGGTGTGGTTGGGAAT 59.959 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
213 214 1.163420 AACAAAGGATGCGCACGACA 61.163 50.000 14.90 0.00 0.00 4.35
551 560 4.393778 GGAGGAGGTCACGGGGGA 62.394 72.222 0.00 0.00 0.00 4.81
553 562 1.916777 GAGGAGGTCACGGGGGAAA 60.917 63.158 0.00 0.00 0.00 3.13
554 563 1.462627 AGGAGGTCACGGGGGAAAA 60.463 57.895 0.00 0.00 0.00 2.29
555 564 1.002502 GGAGGTCACGGGGGAAAAG 60.003 63.158 0.00 0.00 0.00 2.27
556 565 1.486145 GGAGGTCACGGGGGAAAAGA 61.486 60.000 0.00 0.00 0.00 2.52
557 566 0.036294 GAGGTCACGGGGGAAAAGAG 60.036 60.000 0.00 0.00 0.00 2.85
558 567 1.002502 GGTCACGGGGGAAAAGAGG 60.003 63.158 0.00 0.00 0.00 3.69
559 568 1.759236 GTCACGGGGGAAAAGAGGT 59.241 57.895 0.00 0.00 0.00 3.85
560 569 0.978907 GTCACGGGGGAAAAGAGGTA 59.021 55.000 0.00 0.00 0.00 3.08
561 570 1.066358 GTCACGGGGGAAAAGAGGTAG 60.066 57.143 0.00 0.00 0.00 3.18
562 571 0.392595 CACGGGGGAAAAGAGGTAGC 60.393 60.000 0.00 0.00 0.00 3.58
563 572 0.546988 ACGGGGGAAAAGAGGTAGCT 60.547 55.000 0.00 0.00 0.00 3.32
564 573 1.273438 ACGGGGGAAAAGAGGTAGCTA 60.273 52.381 0.00 0.00 0.00 3.32
565 574 1.835531 CGGGGGAAAAGAGGTAGCTAA 59.164 52.381 0.00 0.00 0.00 3.09
566 575 2.237893 CGGGGGAAAAGAGGTAGCTAAA 59.762 50.000 0.00 0.00 0.00 1.85
567 576 3.618351 GGGGGAAAAGAGGTAGCTAAAC 58.382 50.000 0.00 0.00 0.00 2.01
568 577 3.009805 GGGGGAAAAGAGGTAGCTAAACA 59.990 47.826 0.00 0.00 0.00 2.83
569 578 4.507869 GGGGGAAAAGAGGTAGCTAAACAA 60.508 45.833 0.00 0.00 0.00 2.83
570 579 4.458295 GGGGAAAAGAGGTAGCTAAACAAC 59.542 45.833 0.00 0.00 0.00 3.32
571 580 5.314529 GGGAAAAGAGGTAGCTAAACAACT 58.685 41.667 0.00 0.00 0.00 3.16
572 581 6.470278 GGGAAAAGAGGTAGCTAAACAACTA 58.530 40.000 0.00 0.00 0.00 2.24
573 582 6.938596 GGGAAAAGAGGTAGCTAAACAACTAA 59.061 38.462 0.00 0.00 0.00 2.24
574 583 7.610692 GGGAAAAGAGGTAGCTAAACAACTAAT 59.389 37.037 0.00 0.00 0.00 1.73
575 584 8.666573 GGAAAAGAGGTAGCTAAACAACTAATC 58.333 37.037 0.00 0.00 0.00 1.75
576 585 9.438228 GAAAAGAGGTAGCTAAACAACTAATCT 57.562 33.333 0.00 0.00 0.00 2.40
604 613 9.457436 AATACGAATAGTGGTGGTTTTTCTTAT 57.543 29.630 0.00 0.00 0.00 1.73
715 732 4.274950 CCATCGACTCTCTTAGAGAACTCC 59.725 50.000 13.34 2.33 45.07 3.85
758 937 9.809096 AGTACATCAATTAGTGAAGTGAGTATG 57.191 33.333 0.76 0.00 42.49 2.39
759 938 9.587772 GTACATCAATTAGTGAAGTGAGTATGT 57.412 33.333 0.76 0.00 42.49 2.29
773 952 4.561606 GTGAGTATGTTACTAAGTGCGTGG 59.438 45.833 0.00 0.00 39.59 4.94
832 1014 4.332819 GGAGATTCCACGAGGTGTATTTTG 59.667 45.833 0.00 0.00 36.28 2.44
847 1029 5.059710 GTGTATTTTGACTTTGCGAAGATGC 59.940 40.000 20.86 9.41 36.69 3.91
886 1068 1.330829 TCGAACGATCTGACGATCCAG 59.669 52.381 0.00 0.00 42.49 3.86
899 1081 2.016393 GATCCAGATCGCGTCCCACA 62.016 60.000 5.77 0.00 0.00 4.17
930 1112 4.023173 GGCATACGAACGGGTAGC 57.977 61.111 0.00 0.00 0.00 3.58
931 1113 1.142314 GGCATACGAACGGGTAGCA 59.858 57.895 0.00 0.00 0.00 3.49
932 1114 1.149964 GGCATACGAACGGGTAGCAC 61.150 60.000 0.00 0.00 0.00 4.40
933 1115 1.477030 GCATACGAACGGGTAGCACG 61.477 60.000 0.00 0.00 37.36 5.34
934 1116 0.868602 CATACGAACGGGTAGCACGG 60.869 60.000 0.00 0.00 35.23 4.94
935 1117 2.618312 ATACGAACGGGTAGCACGGC 62.618 60.000 0.00 0.00 35.23 5.68
936 1118 4.728102 CGAACGGGTAGCACGGCA 62.728 66.667 7.53 0.00 35.23 5.69
937 1119 2.125269 GAACGGGTAGCACGGCAT 60.125 61.111 7.53 0.00 35.23 4.40
938 1120 1.142314 GAACGGGTAGCACGGCATA 59.858 57.895 7.53 0.00 35.23 3.14
939 1121 0.460635 GAACGGGTAGCACGGCATAA 60.461 55.000 7.53 0.00 35.23 1.90
940 1122 0.036199 AACGGGTAGCACGGCATAAA 60.036 50.000 7.53 0.00 35.23 1.40
941 1123 0.461339 ACGGGTAGCACGGCATAAAG 60.461 55.000 7.53 0.00 35.23 1.85
942 1124 0.179094 CGGGTAGCACGGCATAAAGA 60.179 55.000 0.00 0.00 0.00 2.52
943 1125 1.540363 CGGGTAGCACGGCATAAAGAT 60.540 52.381 0.00 0.00 0.00 2.40
944 1126 1.873591 GGGTAGCACGGCATAAAGATG 59.126 52.381 0.00 0.00 36.02 2.90
945 1127 1.873591 GGTAGCACGGCATAAAGATGG 59.126 52.381 0.00 0.00 33.26 3.51
946 1128 2.484770 GGTAGCACGGCATAAAGATGGA 60.485 50.000 0.00 0.00 33.26 3.41
947 1129 1.959042 AGCACGGCATAAAGATGGAG 58.041 50.000 0.00 0.00 33.26 3.86
962 1144 3.584848 AGATGGAGGGGATATGTTGCTAC 59.415 47.826 0.00 0.00 0.00 3.58
975 1157 3.726291 GTTGCTACCCACAACACAAAT 57.274 42.857 1.95 0.00 45.35 2.32
980 1162 1.028905 ACCCACAACACAAATCACCG 58.971 50.000 0.00 0.00 0.00 4.94
1007 1211 1.755959 GCAGAGAAGAGAGATGGCAGA 59.244 52.381 0.00 0.00 0.00 4.26
1373 1606 1.216444 GTGCAGCTCATGGAGACGA 59.784 57.895 0.00 0.00 0.00 4.20
1420 1653 5.314923 TCGACATACTGGTAAGTGGTAAC 57.685 43.478 0.00 0.00 37.19 2.50
1421 1654 5.012239 TCGACATACTGGTAAGTGGTAACT 58.988 41.667 0.00 0.00 37.19 2.24
1423 1656 6.658816 TCGACATACTGGTAAGTGGTAACTAA 59.341 38.462 0.00 0.00 37.19 2.24
1425 1658 7.362401 CGACATACTGGTAAGTGGTAACTAACT 60.362 40.741 0.00 0.00 37.19 2.24
1430 1663 5.072741 TGGTAAGTGGTAACTAACTCGAGT 58.927 41.667 13.58 13.58 34.77 4.18
1432 1665 6.714810 TGGTAAGTGGTAACTAACTCGAGTTA 59.285 38.462 30.65 30.65 40.22 2.24
1448 1681 7.653523 CTCGAGTTAGAGTTCGTTATCTTTC 57.346 40.000 3.62 0.00 37.99 2.62
1449 1682 7.375106 TCGAGTTAGAGTTCGTTATCTTTCT 57.625 36.000 0.00 0.00 37.99 2.52
1450 1683 7.814642 TCGAGTTAGAGTTCGTTATCTTTCTT 58.185 34.615 0.00 0.00 37.99 2.52
1451 1684 8.295288 TCGAGTTAGAGTTCGTTATCTTTCTTT 58.705 33.333 0.00 0.00 37.99 2.52
1452 1685 8.913656 CGAGTTAGAGTTCGTTATCTTTCTTTT 58.086 33.333 0.00 0.00 32.44 2.27
1454 1687 9.760077 AGTTAGAGTTCGTTATCTTTCTTTTGA 57.240 29.630 0.00 0.00 0.00 2.69
1456 1689 7.123160 AGAGTTCGTTATCTTTCTTTTGAGC 57.877 36.000 0.00 0.00 0.00 4.26
1457 1690 6.706270 AGAGTTCGTTATCTTTCTTTTGAGCA 59.294 34.615 0.00 0.00 0.00 4.26
1458 1691 6.892691 AGTTCGTTATCTTTCTTTTGAGCAG 58.107 36.000 0.00 0.00 0.00 4.24
1459 1692 6.483640 AGTTCGTTATCTTTCTTTTGAGCAGT 59.516 34.615 0.00 0.00 0.00 4.40
1461 1694 7.259290 TCGTTATCTTTCTTTTGAGCAGTTT 57.741 32.000 0.00 0.00 0.00 2.66
1462 1695 7.703328 TCGTTATCTTTCTTTTGAGCAGTTTT 58.297 30.769 0.00 0.00 0.00 2.43
1463 1696 8.832521 TCGTTATCTTTCTTTTGAGCAGTTTTA 58.167 29.630 0.00 0.00 0.00 1.52
1464 1697 9.445786 CGTTATCTTTCTTTTGAGCAGTTTTAA 57.554 29.630 0.00 0.00 0.00 1.52
1468 1701 8.633075 TCTTTCTTTTGAGCAGTTTTAACATG 57.367 30.769 0.00 0.00 0.00 3.21
1469 1702 6.826893 TTCTTTTGAGCAGTTTTAACATGC 57.173 33.333 0.00 8.18 40.29 4.06
1479 1712 7.105494 GCAGTTTTAACATGCTTCCTTTTAC 57.895 36.000 0.00 0.00 37.00 2.01
1480 1713 6.699642 GCAGTTTTAACATGCTTCCTTTTACA 59.300 34.615 0.00 0.00 37.00 2.41
1481 1714 7.384932 GCAGTTTTAACATGCTTCCTTTTACAT 59.615 33.333 0.00 0.00 37.00 2.29
1482 1715 8.915654 CAGTTTTAACATGCTTCCTTTTACATC 58.084 33.333 0.00 0.00 0.00 3.06
1483 1716 8.088365 AGTTTTAACATGCTTCCTTTTACATCC 58.912 33.333 0.00 0.00 0.00 3.51
1484 1717 7.775053 TTTAACATGCTTCCTTTTACATCCT 57.225 32.000 0.00 0.00 0.00 3.24
1485 1718 5.904362 AACATGCTTCCTTTTACATCCTC 57.096 39.130 0.00 0.00 0.00 3.71
1486 1719 5.184892 ACATGCTTCCTTTTACATCCTCT 57.815 39.130 0.00 0.00 0.00 3.69
1487 1720 5.574188 ACATGCTTCCTTTTACATCCTCTT 58.426 37.500 0.00 0.00 0.00 2.85
1488 1721 6.012745 ACATGCTTCCTTTTACATCCTCTTT 58.987 36.000 0.00 0.00 0.00 2.52
1489 1722 6.494835 ACATGCTTCCTTTTACATCCTCTTTT 59.505 34.615 0.00 0.00 0.00 2.27
1490 1723 6.575162 TGCTTCCTTTTACATCCTCTTTTC 57.425 37.500 0.00 0.00 0.00 2.29
1491 1724 6.068010 TGCTTCCTTTTACATCCTCTTTTCA 58.932 36.000 0.00 0.00 0.00 2.69
1494 1727 6.554334 TCCTTTTACATCCTCTTTTCAACG 57.446 37.500 0.00 0.00 0.00 4.10
1496 1729 6.426937 TCCTTTTACATCCTCTTTTCAACGAG 59.573 38.462 0.00 0.00 0.00 4.18
1498 1731 7.360438 CCTTTTACATCCTCTTTTCAACGAGAG 60.360 40.741 0.00 0.00 39.25 3.20
1524 1757 9.828852 GTAAGAGTATACATTAGATCTGAACCG 57.171 37.037 5.18 0.00 0.00 4.44
1525 1758 8.466617 AAGAGTATACATTAGATCTGAACCGT 57.533 34.615 5.18 0.00 0.00 4.83
1526 1759 8.466617 AGAGTATACATTAGATCTGAACCGTT 57.533 34.615 5.18 0.00 0.00 4.44
1527 1760 8.353684 AGAGTATACATTAGATCTGAACCGTTG 58.646 37.037 5.18 0.00 0.00 4.10
1528 1761 8.234136 AGTATACATTAGATCTGAACCGTTGA 57.766 34.615 5.18 0.00 0.00 3.18
1529 1762 8.861086 AGTATACATTAGATCTGAACCGTTGAT 58.139 33.333 5.18 0.00 0.00 2.57
1532 1765 9.862371 ATACATTAGATCTGAACCGTTGATATC 57.138 33.333 5.18 0.00 0.00 1.63
1533 1766 7.726216 ACATTAGATCTGAACCGTTGATATCA 58.274 34.615 5.18 0.00 0.00 2.15
1534 1767 8.370940 ACATTAGATCTGAACCGTTGATATCAT 58.629 33.333 6.17 0.00 0.00 2.45
1535 1768 9.212641 CATTAGATCTGAACCGTTGATATCATT 57.787 33.333 6.17 0.00 0.00 2.57
1547 1780 9.733556 ACCGTTGATATCATTAATAATTAGGCA 57.266 29.630 6.17 0.00 0.00 4.75
1563 1796 9.830975 ATAATTAGGCAAATTTTAACATGGTCC 57.169 29.630 0.00 0.00 38.71 4.46
1564 1797 4.551702 AGGCAAATTTTAACATGGTCCC 57.448 40.909 0.00 0.00 0.00 4.46
1565 1798 4.167319 AGGCAAATTTTAACATGGTCCCT 58.833 39.130 0.00 0.00 0.00 4.20
1566 1799 4.222810 AGGCAAATTTTAACATGGTCCCTC 59.777 41.667 0.00 0.00 0.00 4.30
1567 1800 4.222810 GGCAAATTTTAACATGGTCCCTCT 59.777 41.667 0.00 0.00 0.00 3.69
1568 1801 5.279960 GGCAAATTTTAACATGGTCCCTCTT 60.280 40.000 0.00 0.00 0.00 2.85
1569 1802 6.071051 GGCAAATTTTAACATGGTCCCTCTTA 60.071 38.462 0.00 0.00 0.00 2.10
1570 1803 6.811665 GCAAATTTTAACATGGTCCCTCTTAC 59.188 38.462 0.00 0.00 0.00 2.34
1606 1839 7.726033 ACATGTGAGGTAAGAAGATAAGAGT 57.274 36.000 0.00 0.00 0.00 3.24
1607 1840 7.777095 ACATGTGAGGTAAGAAGATAAGAGTC 58.223 38.462 0.00 0.00 0.00 3.36
1608 1841 7.397476 ACATGTGAGGTAAGAAGATAAGAGTCA 59.603 37.037 0.00 0.00 0.00 3.41
1610 1843 8.367660 TGTGAGGTAAGAAGATAAGAGTCAAT 57.632 34.615 0.00 0.00 0.00 2.57
1611 1844 8.470805 TGTGAGGTAAGAAGATAAGAGTCAATC 58.529 37.037 0.00 0.00 0.00 2.67
1614 1847 9.528018 GAGGTAAGAAGATAAGAGTCAATCAAG 57.472 37.037 7.89 0.00 0.00 3.02
1616 1849 7.225734 GGTAAGAAGATAAGAGTCAATCAAGCC 59.774 40.741 7.89 0.00 0.00 4.35
1617 1850 6.305272 AGAAGATAAGAGTCAATCAAGCCA 57.695 37.500 7.89 0.00 0.00 4.75
1618 1851 6.897986 AGAAGATAAGAGTCAATCAAGCCAT 58.102 36.000 7.89 0.00 0.00 4.40
1620 1853 7.498570 AGAAGATAAGAGTCAATCAAGCCATTC 59.501 37.037 7.89 3.09 0.00 2.67
1622 1855 7.288560 AGATAAGAGTCAATCAAGCCATTCAT 58.711 34.615 7.89 0.00 0.00 2.57
1623 1856 7.778853 AGATAAGAGTCAATCAAGCCATTCATT 59.221 33.333 7.89 0.00 0.00 2.57
1624 1857 5.578005 AGAGTCAATCAAGCCATTCATTG 57.422 39.130 0.00 0.00 0.00 2.82
1625 1858 5.258841 AGAGTCAATCAAGCCATTCATTGA 58.741 37.500 0.00 0.00 39.59 2.57
1626 1859 5.892119 AGAGTCAATCAAGCCATTCATTGAT 59.108 36.000 0.00 0.00 45.67 2.57
1630 1923 5.889289 TCAATCAAGCCATTCATTGATGAGA 59.111 36.000 1.50 1.50 43.56 3.27
1633 1926 5.442391 TCAAGCCATTCATTGATGAGATCA 58.558 37.500 0.00 0.00 38.19 2.92
1648 1956 8.183104 TGATGAGATCAACGGTTAAGATCTAT 57.817 34.615 18.34 13.56 46.15 1.98
1649 1957 8.642432 TGATGAGATCAACGGTTAAGATCTATT 58.358 33.333 18.34 11.65 46.15 1.73
1651 1959 9.838339 ATGAGATCAACGGTTAAGATCTATTTT 57.162 29.630 18.34 2.99 46.15 1.82
1677 1985 6.672266 ACTCTTACCTCTCATGTGAAAAGA 57.328 37.500 12.55 12.55 0.00 2.52
1678 1986 6.696411 ACTCTTACCTCTCATGTGAAAAGAG 58.304 40.000 24.85 24.85 42.67 2.85
1684 1992 3.519510 CTCTCATGTGAAAAGAGGGGGTA 59.480 47.826 0.00 0.00 34.24 3.69
1690 1998 2.026169 GTGAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
1692 2000 1.968278 AAAGAGGGGGTAAGAGGGAC 58.032 55.000 0.00 0.00 0.00 4.46
1694 2002 1.160289 AGAGGGGGTAAGAGGGACCA 61.160 60.000 0.00 0.00 38.86 4.02
1695 2003 0.029989 GAGGGGGTAAGAGGGACCAT 60.030 60.000 0.00 0.00 38.86 3.55
1696 2004 0.327576 AGGGGGTAAGAGGGACCATG 60.328 60.000 0.00 0.00 38.86 3.66
1697 2005 0.623617 GGGGGTAAGAGGGACCATGT 60.624 60.000 0.00 0.00 38.86 3.21
1698 2006 1.296002 GGGGTAAGAGGGACCATGTT 58.704 55.000 0.00 0.00 38.86 2.71
1699 2007 2.484602 GGGGTAAGAGGGACCATGTTA 58.515 52.381 0.00 0.00 38.86 2.41
1700 2008 2.848071 GGGGTAAGAGGGACCATGTTAA 59.152 50.000 0.00 0.00 38.86 2.01
1703 2011 4.703575 GGGTAAGAGGGACCATGTTAAAAC 59.296 45.833 0.00 0.00 38.86 2.43
1704 2012 5.516062 GGGTAAGAGGGACCATGTTAAAACT 60.516 44.000 0.00 0.00 38.86 2.66
1706 2014 3.421844 AGAGGGACCATGTTAAAACTGC 58.578 45.455 0.00 0.00 0.00 4.40
1707 2015 3.074538 AGAGGGACCATGTTAAAACTGCT 59.925 43.478 0.00 0.00 0.00 4.24
1711 2019 5.007682 GGGACCATGTTAAAACTGCTCTAA 58.992 41.667 0.00 0.00 0.00 2.10
1712 2020 5.652452 GGGACCATGTTAAAACTGCTCTAAT 59.348 40.000 0.00 0.00 0.00 1.73
1713 2021 6.826741 GGGACCATGTTAAAACTGCTCTAATA 59.173 38.462 0.00 0.00 0.00 0.98
1714 2022 7.338449 GGGACCATGTTAAAACTGCTCTAATAA 59.662 37.037 0.00 0.00 0.00 1.40
1726 2034 8.429493 AACTGCTCTAATAATTAACGGTTACC 57.571 34.615 0.00 0.00 0.00 2.85
1727 2035 7.789026 ACTGCTCTAATAATTAACGGTTACCT 58.211 34.615 0.00 0.00 0.00 3.08
1728 2036 8.262933 ACTGCTCTAATAATTAACGGTTACCTT 58.737 33.333 0.00 0.70 0.00 3.50
1729 2037 9.754382 CTGCTCTAATAATTAACGGTTACCTTA 57.246 33.333 0.00 2.86 0.00 2.69
1766 2074 6.553953 AAAAAGAAAGGGTAAAAAGGAGCA 57.446 33.333 0.00 0.00 0.00 4.26
1767 2075 6.747414 AAAAGAAAGGGTAAAAAGGAGCAT 57.253 33.333 0.00 0.00 0.00 3.79
1768 2076 5.728637 AAGAAAGGGTAAAAAGGAGCATG 57.271 39.130 0.00 0.00 0.00 4.06
1769 2077 4.740902 AGAAAGGGTAAAAAGGAGCATGT 58.259 39.130 0.00 0.00 0.00 3.21
1770 2078 5.147767 AGAAAGGGTAAAAAGGAGCATGTT 58.852 37.500 0.00 0.00 0.00 2.71
1771 2079 6.311735 AGAAAGGGTAAAAAGGAGCATGTTA 58.688 36.000 0.00 0.00 0.00 2.41
1772 2080 6.780522 AGAAAGGGTAAAAAGGAGCATGTTAA 59.219 34.615 0.00 0.00 0.00 2.01
1773 2081 6.987403 AAGGGTAAAAAGGAGCATGTTAAA 57.013 33.333 0.00 0.00 0.00 1.52
1774 2082 6.590234 AGGGTAAAAAGGAGCATGTTAAAG 57.410 37.500 0.00 0.00 0.00 1.85
1775 2083 6.075315 AGGGTAAAAAGGAGCATGTTAAAGT 58.925 36.000 0.00 0.00 0.00 2.66
1776 2084 6.553476 AGGGTAAAAAGGAGCATGTTAAAGTT 59.447 34.615 0.00 0.00 0.00 2.66
1778 2086 7.170828 GGGTAAAAAGGAGCATGTTAAAGTTTG 59.829 37.037 0.00 0.00 0.00 2.93
1786 2094 6.147864 AGCATGTTAAAGTTTGCTCTTTGA 57.852 33.333 0.00 2.65 41.38 2.69
1787 2095 6.211515 AGCATGTTAAAGTTTGCTCTTTGAG 58.788 36.000 0.00 0.00 41.38 3.02
1788 2096 6.039717 AGCATGTTAAAGTTTGCTCTTTGAGA 59.960 34.615 0.00 4.11 41.38 3.27
1791 2099 5.299279 TGTTAAAGTTTGCTCTTTGAGAGGG 59.701 40.000 7.05 0.00 42.54 4.30
1795 2103 3.586618 AGTTTGCTCTTTGAGAGGGAGAT 59.413 43.478 7.05 0.00 42.54 2.75
1796 2104 4.042684 AGTTTGCTCTTTGAGAGGGAGATT 59.957 41.667 7.05 0.00 42.54 2.40
1797 2105 4.647564 TTGCTCTTTGAGAGGGAGATTT 57.352 40.909 7.05 0.00 42.54 2.17
1799 2107 3.843027 TGCTCTTTGAGAGGGAGATTTCT 59.157 43.478 7.05 0.00 42.54 2.52
1801 2109 4.162131 GCTCTTTGAGAGGGAGATTTCTCT 59.838 45.833 7.47 0.00 42.54 3.10
1845 3202 1.155889 CTATGCAGGTGAACAACGCA 58.844 50.000 10.40 10.40 33.64 5.24
1848 3205 2.546494 GCAGGTGAACAACGCAGCT 61.546 57.895 0.00 0.00 44.17 4.24
1875 3232 2.125673 GCTAAGGCGAGCGTGGAA 60.126 61.111 0.00 0.00 31.57 3.53
1902 3259 1.911357 TCGGAGGAGTACTCACACCTA 59.089 52.381 23.91 12.39 44.79 3.08
1906 3263 4.279145 GGAGGAGTACTCACACCTAATGA 58.721 47.826 23.91 0.00 44.79 2.57
1923 3280 1.116308 TGACGACCAACCAAGAGTCA 58.884 50.000 0.00 0.00 36.43 3.41
1962 3319 4.035102 GCGCACCCCTTCCTCCTT 62.035 66.667 0.30 0.00 0.00 3.36
1992 3349 1.766461 CTCCGGGGGAGGTAGCATT 60.766 63.158 0.00 0.00 45.43 3.56
2070 3821 1.340405 CCAAATCCAGAGGTCCTGTGG 60.340 57.143 26.19 26.19 44.96 4.17
2132 3883 2.624029 CCTTTGTACATCCCCTGCCAAT 60.624 50.000 0.00 0.00 0.00 3.16
2458 6066 4.765273 TCTTGCACTTGAAGTAGTTGTCA 58.235 39.130 0.00 0.00 0.00 3.58
2661 6269 0.174162 GGCTTTTCATTGCTCGCCAT 59.826 50.000 0.00 0.00 37.48 4.40
2712 6320 1.048601 TGCTCTTCTTCCTGGACGTT 58.951 50.000 0.00 0.00 0.00 3.99
2714 6322 1.270358 GCTCTTCTTCCTGGACGTTGT 60.270 52.381 0.00 0.00 0.00 3.32
2731 6339 4.761058 TCCGCGGCTTCCTCCTCT 62.761 66.667 23.51 0.00 0.00 3.69
2771 6379 3.496675 TCGTCATCCGAGTCCATCT 57.503 52.632 0.00 0.00 41.60 2.90
2772 6380 1.763968 TCGTCATCCGAGTCCATCTT 58.236 50.000 0.00 0.00 41.60 2.40
2917 6525 2.760159 GCGCTGCTATTTTCCGGCA 61.760 57.895 0.00 0.00 32.95 5.69
3209 6819 2.200337 GCCGAAAAAGTGGCCTGGT 61.200 57.895 3.32 0.00 45.73 4.00
3335 6946 2.806244 AGACCGACATGTTAAACAGTGC 59.194 45.455 0.00 0.00 0.00 4.40
3397 7012 5.856126 TGAATAGGTTGAACTGCTTTACG 57.144 39.130 0.00 0.00 0.00 3.18
3730 7512 5.401531 AGAGTACCTTGCGAATAAACTCA 57.598 39.130 0.00 0.00 35.46 3.41
3734 7516 5.938125 AGTACCTTGCGAATAAACTCATGTT 59.062 36.000 0.00 0.00 38.16 2.71
3772 7555 5.738909 AGAGTGACAAATCCAATAGTCCAG 58.261 41.667 0.00 0.00 0.00 3.86
3805 7588 2.231964 TGTACGTAGGCAGGTCGAAAAT 59.768 45.455 0.00 0.00 0.00 1.82
3866 7649 6.745907 GTGAAAGAAAGGCAATCCGTATAAAC 59.254 38.462 0.00 0.00 37.47 2.01
3901 7684 9.444600 CATGGGTGTTAATTAGTTGTTACTAGT 57.555 33.333 0.00 0.00 38.09 2.57
3930 7715 1.226831 AAACGCGTGTTTGCCCTTG 60.227 52.632 25.19 0.00 46.28 3.61
3937 7722 2.745281 GCGTGTTTGCCCTTGTCTATTA 59.255 45.455 0.00 0.00 0.00 0.98
3946 7731 5.180271 TGCCCTTGTCTATTAAGTTAACCG 58.820 41.667 0.88 0.00 0.00 4.44
3960 7745 8.721019 TTAAGTTAACCGTGTATTTCCTATGG 57.279 34.615 0.88 0.00 0.00 2.74
3963 7748 6.990349 AGTTAACCGTGTATTTCCTATGGATG 59.010 38.462 0.88 0.00 0.00 3.51
3964 7749 3.740115 ACCGTGTATTTCCTATGGATGC 58.260 45.455 0.00 0.00 0.00 3.91
3980 7765 8.633561 CCTATGGATGCATATCTCTAATCGTTA 58.366 37.037 7.44 0.00 33.68 3.18
3983 7768 5.751028 GGATGCATATCTCTAATCGTTAGGC 59.249 44.000 0.00 0.00 34.00 3.93
3993 7778 7.426410 TCTCTAATCGTTAGGCTGAAATACAG 58.574 38.462 0.00 0.00 39.42 2.74
4000 7785 5.354234 CGTTAGGCTGAAATACAGGAACATT 59.646 40.000 0.00 0.00 45.82 2.71
4005 7790 7.775120 AGGCTGAAATACAGGAACATTATTTG 58.225 34.615 0.00 0.00 45.82 2.32
4063 7848 4.935352 AAAATCACAGCAACCTAAAGCA 57.065 36.364 0.00 0.00 0.00 3.91
4066 7851 2.649190 TCACAGCAACCTAAAGCACAA 58.351 42.857 0.00 0.00 0.00 3.33
4074 7859 4.867608 GCAACCTAAAGCACAAACAAAGAA 59.132 37.500 0.00 0.00 0.00 2.52
4124 7918 3.505464 ATCGAAGTGAAGTCCTTACCG 57.495 47.619 0.00 0.00 0.00 4.02
4136 7930 3.628646 CTTACCGCTGGCCTGGCTT 62.629 63.158 19.68 4.91 0.00 4.35
4144 7938 0.734889 CTGGCCTGGCTTTATGAACG 59.265 55.000 19.68 0.00 0.00 3.95
4147 7941 0.099436 GCCTGGCTTTATGAACGCTG 59.901 55.000 12.43 0.00 0.00 5.18
4149 7943 0.804364 CTGGCTTTATGAACGCTGCA 59.196 50.000 0.00 0.00 0.00 4.41
4152 7946 1.068610 GGCTTTATGAACGCTGCAACA 60.069 47.619 0.00 0.00 0.00 3.33
4179 7982 1.205460 ACGCCACCCCACCTAATTCT 61.205 55.000 0.00 0.00 0.00 2.40
4182 7985 0.625849 CCACCCCACCTAATTCTGCT 59.374 55.000 0.00 0.00 0.00 4.24
4216 8019 1.037493 ACTTATGCTCGGTATCGCCA 58.963 50.000 0.00 0.00 36.97 5.69
4231 8034 2.439104 GCCATCTTCTCTCCGCCCT 61.439 63.158 0.00 0.00 0.00 5.19
4245 8048 3.022710 GCCCTTTCATTGCTGCCCC 62.023 63.158 0.00 0.00 0.00 5.80
4277 8080 0.826256 TATCGCACTACTCCCGCCAT 60.826 55.000 0.00 0.00 0.00 4.40
4301 8105 1.303236 CACTCCCACGCATTCCCAA 60.303 57.895 0.00 0.00 0.00 4.12
4306 8110 1.900981 CCACGCATTCCCAACCACA 60.901 57.895 0.00 0.00 0.00 4.17
4320 8124 2.378634 CCACACCATCCCTCCTCCC 61.379 68.421 0.00 0.00 0.00 4.30
4342 8146 3.191791 CCATGAACATGAACATGCTGTCA 59.808 43.478 21.77 14.01 42.39 3.58
4355 8159 1.979155 CTGTCACGCCTCCTCTCCA 60.979 63.158 0.00 0.00 0.00 3.86
4389 8193 1.315257 GGCTGGTTGACGCCATTGAT 61.315 55.000 0.00 0.00 45.59 2.57
4404 8208 2.867287 TTGATGCACACAAGGTGTTG 57.133 45.000 0.00 0.00 45.08 3.33
4425 8266 4.936891 TGCCTCTCTTTCTTTGCTTTTTC 58.063 39.130 0.00 0.00 0.00 2.29
4432 8273 4.101430 TCTTTCTTTGCTTTTTCCCAGCAT 59.899 37.500 0.00 0.00 46.62 3.79
4466 8307 1.890876 AATGAGTAAGCACGTTGGCA 58.109 45.000 0.36 0.00 35.83 4.92
4475 8316 0.852136 GCACGTTGGCATTGTTCAAC 59.148 50.000 12.06 12.06 39.66 3.18
4476 8317 1.535860 GCACGTTGGCATTGTTCAACT 60.536 47.619 16.77 7.03 40.56 3.16
4480 8321 3.378742 ACGTTGGCATTGTTCAACTACAA 59.621 39.130 16.77 0.00 41.81 2.41
4482 8323 4.981674 CGTTGGCATTGTTCAACTACAATT 59.018 37.500 16.77 0.00 44.18 2.32
4484 8325 4.880759 TGGCATTGTTCAACTACAATTGG 58.119 39.130 10.83 0.00 44.18 3.16
4485 8326 4.343526 TGGCATTGTTCAACTACAATTGGT 59.656 37.500 10.83 0.00 44.18 3.67
4486 8327 4.685628 GGCATTGTTCAACTACAATTGGTG 59.314 41.667 10.83 4.45 44.18 4.17
4487 8328 5.508825 GGCATTGTTCAACTACAATTGGTGA 60.509 40.000 10.83 4.98 44.18 4.02
4488 8329 5.402270 GCATTGTTCAACTACAATTGGTGAC 59.598 40.000 10.83 0.00 44.18 3.67
4489 8330 6.502652 CATTGTTCAACTACAATTGGTGACA 58.497 36.000 10.83 2.21 44.18 3.58
4518 8359 8.752005 AATGAAAAATCATTCGAGGAGGAATA 57.248 30.769 0.00 0.00 35.63 1.75
4536 8377 6.623329 AGGAATATTTAGGATTCATTGCCCA 58.377 36.000 0.00 0.00 35.40 5.36
4538 8379 6.071165 GGAATATTTAGGATTCATTGCCCAGG 60.071 42.308 0.00 0.00 35.40 4.45
4557 8398 1.610522 GGGGATGGCGATGAAATTCTG 59.389 52.381 0.00 0.00 0.00 3.02
4575 8416 8.548880 AAATTCTGGAGGATGATGATGATTTT 57.451 30.769 0.00 0.00 0.00 1.82
4584 8425 3.615155 TGATGATGATTTTGGCACGGTA 58.385 40.909 0.00 0.00 0.00 4.02
4600 8441 1.156736 GGTAGCTCTTTTGCTTGCGA 58.843 50.000 0.00 0.00 43.74 5.10
4622 8463 2.063015 ATGGACGAGGGCAACAACCA 62.063 55.000 0.00 0.00 39.74 3.67
4633 8474 2.799978 GGCAACAACCAAAAGCATACAC 59.200 45.455 0.00 0.00 0.00 2.90
4675 8516 8.447833 GTGTTATGATTCTTCGGAACATGTTAA 58.552 33.333 11.95 1.02 36.72 2.01
4684 8525 4.066490 TCGGAACATGTTAAAACCATCGT 58.934 39.130 11.95 0.00 0.00 3.73
4693 8534 6.862711 TGTTAAAACCATCGTATGTGTGAA 57.137 33.333 0.00 0.00 0.00 3.18
4696 8537 9.000486 TGTTAAAACCATCGTATGTGTGAATAA 58.000 29.630 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.812011 GGTGAAAACCGTGCTATGACTT 59.188 45.455 0.00 0.00 0.00 3.01
213 214 1.617947 GGATGGTGGTTCCTCGAGCT 61.618 60.000 6.99 0.00 37.07 4.09
421 422 2.514592 GGCATCGCAGGCTAAGCA 60.515 61.111 0.00 0.00 0.00 3.91
456 457 2.042435 CCGAGCCTCCCTCTCCTT 60.042 66.667 0.00 0.00 38.49 3.36
551 560 9.794719 AAGATTAGTTGTTTAGCTACCTCTTTT 57.205 29.630 0.00 0.00 0.00 2.27
568 577 9.760077 CCACCACTATTCGTATTAAGATTAGTT 57.240 33.333 9.85 0.00 34.50 2.24
569 578 8.921205 ACCACCACTATTCGTATTAAGATTAGT 58.079 33.333 7.79 7.79 36.07 2.24
570 579 9.760077 AACCACCACTATTCGTATTAAGATTAG 57.240 33.333 6.87 6.87 0.00 1.73
572 581 9.457436 AAAACCACCACTATTCGTATTAAGATT 57.543 29.630 0.00 0.00 0.00 2.40
573 582 9.457436 AAAAACCACCACTATTCGTATTAAGAT 57.543 29.630 0.00 0.00 0.00 2.40
574 583 8.851541 AAAAACCACCACTATTCGTATTAAGA 57.148 30.769 0.00 0.00 0.00 2.10
575 584 8.943002 AGAAAAACCACCACTATTCGTATTAAG 58.057 33.333 0.00 0.00 0.00 1.85
576 585 8.851541 AGAAAAACCACCACTATTCGTATTAA 57.148 30.769 0.00 0.00 0.00 1.40
582 591 8.488651 ACTATAAGAAAAACCACCACTATTCG 57.511 34.615 0.00 0.00 0.00 3.34
696 713 5.630661 TTTGGAGTTCTCTAAGAGAGTCG 57.369 43.478 5.88 0.00 42.83 4.18
751 930 4.460034 TCCACGCACTTAGTAACATACTCA 59.540 41.667 0.00 0.00 40.14 3.41
773 952 1.426041 TAAAAAGGGCTCGCGCGATC 61.426 55.000 34.86 29.31 36.88 3.69
832 1014 0.449388 CCTGGCATCTTCGCAAAGTC 59.551 55.000 0.00 0.00 33.95 3.01
847 1029 2.757077 GGTCAACACCCTCCCTGG 59.243 66.667 0.00 0.00 36.54 4.45
886 1068 1.078759 CACTCTTGTGGGACGCGATC 61.079 60.000 15.93 6.63 45.01 3.69
922 1104 0.461339 CTTTATGCCGTGCTACCCGT 60.461 55.000 0.00 0.00 0.00 5.28
923 1105 0.179094 TCTTTATGCCGTGCTACCCG 60.179 55.000 0.00 0.00 0.00 5.28
924 1106 1.873591 CATCTTTATGCCGTGCTACCC 59.126 52.381 0.00 0.00 0.00 3.69
925 1107 1.873591 CCATCTTTATGCCGTGCTACC 59.126 52.381 0.00 0.00 0.00 3.18
926 1108 2.802816 CTCCATCTTTATGCCGTGCTAC 59.197 50.000 0.00 0.00 0.00 3.58
927 1109 2.224281 CCTCCATCTTTATGCCGTGCTA 60.224 50.000 0.00 0.00 0.00 3.49
928 1110 1.475751 CCTCCATCTTTATGCCGTGCT 60.476 52.381 0.00 0.00 0.00 4.40
929 1111 0.947244 CCTCCATCTTTATGCCGTGC 59.053 55.000 0.00 0.00 0.00 5.34
930 1112 1.597742 CCCTCCATCTTTATGCCGTG 58.402 55.000 0.00 0.00 0.00 4.94
931 1113 0.474184 CCCCTCCATCTTTATGCCGT 59.526 55.000 0.00 0.00 0.00 5.68
932 1114 0.764890 TCCCCTCCATCTTTATGCCG 59.235 55.000 0.00 0.00 0.00 5.69
933 1115 4.018050 ACATATCCCCTCCATCTTTATGCC 60.018 45.833 0.00 0.00 0.00 4.40
934 1116 5.184892 ACATATCCCCTCCATCTTTATGC 57.815 43.478 0.00 0.00 0.00 3.14
935 1117 5.416952 GCAACATATCCCCTCCATCTTTATG 59.583 44.000 0.00 0.00 0.00 1.90
936 1118 5.314306 AGCAACATATCCCCTCCATCTTTAT 59.686 40.000 0.00 0.00 0.00 1.40
937 1119 4.665009 AGCAACATATCCCCTCCATCTTTA 59.335 41.667 0.00 0.00 0.00 1.85
938 1120 3.464833 AGCAACATATCCCCTCCATCTTT 59.535 43.478 0.00 0.00 0.00 2.52
939 1121 3.059097 AGCAACATATCCCCTCCATCTT 58.941 45.455 0.00 0.00 0.00 2.40
940 1122 2.711174 AGCAACATATCCCCTCCATCT 58.289 47.619 0.00 0.00 0.00 2.90
941 1123 3.307762 GGTAGCAACATATCCCCTCCATC 60.308 52.174 0.00 0.00 0.00 3.51
942 1124 2.644798 GGTAGCAACATATCCCCTCCAT 59.355 50.000 0.00 0.00 0.00 3.41
943 1125 2.054799 GGTAGCAACATATCCCCTCCA 58.945 52.381 0.00 0.00 0.00 3.86
944 1126 1.351350 GGGTAGCAACATATCCCCTCC 59.649 57.143 0.00 0.00 32.66 4.30
945 1127 2.054799 TGGGTAGCAACATATCCCCTC 58.945 52.381 0.00 0.00 37.52 4.30
946 1128 1.774856 GTGGGTAGCAACATATCCCCT 59.225 52.381 0.00 0.00 37.52 4.79
947 1129 1.493022 TGTGGGTAGCAACATATCCCC 59.507 52.381 0.00 0.00 37.52 4.81
962 1144 0.313672 CCGGTGATTTGTGTTGTGGG 59.686 55.000 0.00 0.00 0.00 4.61
975 1157 1.740332 TTCTCTGCGTGTTCCGGTGA 61.740 55.000 0.00 0.00 36.94 4.02
980 1162 1.542030 TCTCTCTTCTCTGCGTGTTCC 59.458 52.381 0.00 0.00 0.00 3.62
1007 1211 2.045242 CCCTGCTCATGCTGCTGT 60.045 61.111 0.00 0.00 40.48 4.40
1059 1263 4.947147 TTGCTGCCACCGGTGACC 62.947 66.667 36.07 24.60 0.00 4.02
1068 1272 2.045045 CCGATCCCTTTGCTGCCA 60.045 61.111 0.00 0.00 0.00 4.92
1194 1427 3.112075 CGATCGCGTGGCTGTGTT 61.112 61.111 5.77 0.00 0.00 3.32
1423 1656 6.740411 AAGATAACGAACTCTAACTCGAGT 57.260 37.500 13.58 13.58 45.73 4.18
1425 1658 7.375106 AGAAAGATAACGAACTCTAACTCGA 57.625 36.000 0.00 0.00 38.43 4.04
1430 1663 8.709646 GCTCAAAAGAAAGATAACGAACTCTAA 58.290 33.333 0.00 0.00 0.00 2.10
1432 1665 6.706270 TGCTCAAAAGAAAGATAACGAACTCT 59.294 34.615 0.00 0.00 0.00 3.24
1433 1666 6.888430 TGCTCAAAAGAAAGATAACGAACTC 58.112 36.000 0.00 0.00 0.00 3.01
1434 1667 6.483640 ACTGCTCAAAAGAAAGATAACGAACT 59.516 34.615 0.00 0.00 0.00 3.01
1435 1668 6.659776 ACTGCTCAAAAGAAAGATAACGAAC 58.340 36.000 0.00 0.00 0.00 3.95
1438 1671 7.914537 AAAACTGCTCAAAAGAAAGATAACG 57.085 32.000 0.00 0.00 0.00 3.18
1442 1675 9.252962 CATGTTAAAACTGCTCAAAAGAAAGAT 57.747 29.630 0.00 0.00 0.00 2.40
1443 1676 7.222611 GCATGTTAAAACTGCTCAAAAGAAAGA 59.777 33.333 0.00 0.00 33.37 2.52
1445 1678 7.041107 AGCATGTTAAAACTGCTCAAAAGAAA 58.959 30.769 11.52 0.00 38.25 2.52
1446 1679 6.572519 AGCATGTTAAAACTGCTCAAAAGAA 58.427 32.000 11.52 0.00 38.25 2.52
1447 1680 6.147864 AGCATGTTAAAACTGCTCAAAAGA 57.852 33.333 11.52 0.00 38.25 2.52
1448 1681 6.074142 GGAAGCATGTTAAAACTGCTCAAAAG 60.074 38.462 15.36 0.00 40.18 2.27
1449 1682 5.752955 GGAAGCATGTTAAAACTGCTCAAAA 59.247 36.000 15.36 0.00 40.18 2.44
1450 1683 5.068987 AGGAAGCATGTTAAAACTGCTCAAA 59.931 36.000 15.36 0.00 40.18 2.69
1451 1684 4.584325 AGGAAGCATGTTAAAACTGCTCAA 59.416 37.500 15.36 0.00 40.18 3.02
1452 1685 4.144297 AGGAAGCATGTTAAAACTGCTCA 58.856 39.130 15.36 0.00 40.18 4.26
1453 1686 4.773323 AGGAAGCATGTTAAAACTGCTC 57.227 40.909 15.36 10.94 40.18 4.26
1454 1687 5.535753 AAAGGAAGCATGTTAAAACTGCT 57.464 34.783 11.52 11.52 41.64 4.24
1455 1688 6.699642 TGTAAAAGGAAGCATGTTAAAACTGC 59.300 34.615 0.00 8.36 35.05 4.40
1456 1689 8.816640 ATGTAAAAGGAAGCATGTTAAAACTG 57.183 30.769 0.00 0.00 0.00 3.16
1457 1690 8.088365 GGATGTAAAAGGAAGCATGTTAAAACT 58.912 33.333 0.00 0.00 0.00 2.66
1458 1691 8.088365 AGGATGTAAAAGGAAGCATGTTAAAAC 58.912 33.333 0.00 0.00 0.00 2.43
1459 1692 8.189119 AGGATGTAAAAGGAAGCATGTTAAAA 57.811 30.769 0.00 0.00 0.00 1.52
1461 1694 7.175104 AGAGGATGTAAAAGGAAGCATGTTAA 58.825 34.615 0.00 0.00 0.00 2.01
1462 1695 6.721318 AGAGGATGTAAAAGGAAGCATGTTA 58.279 36.000 0.00 0.00 0.00 2.41
1463 1696 5.574188 AGAGGATGTAAAAGGAAGCATGTT 58.426 37.500 0.00 0.00 0.00 2.71
1464 1697 5.184892 AGAGGATGTAAAAGGAAGCATGT 57.815 39.130 0.00 0.00 0.00 3.21
1465 1698 6.521151 AAAGAGGATGTAAAAGGAAGCATG 57.479 37.500 0.00 0.00 0.00 4.06
1466 1699 6.721208 TGAAAAGAGGATGTAAAAGGAAGCAT 59.279 34.615 0.00 0.00 0.00 3.79
1467 1700 6.068010 TGAAAAGAGGATGTAAAAGGAAGCA 58.932 36.000 0.00 0.00 0.00 3.91
1468 1701 6.575162 TGAAAAGAGGATGTAAAAGGAAGC 57.425 37.500 0.00 0.00 0.00 3.86
1469 1702 7.041372 TCGTTGAAAAGAGGATGTAAAAGGAAG 60.041 37.037 0.00 0.00 0.00 3.46
1470 1703 6.768861 TCGTTGAAAAGAGGATGTAAAAGGAA 59.231 34.615 0.00 0.00 0.00 3.36
1472 1705 6.426937 TCTCGTTGAAAAGAGGATGTAAAAGG 59.573 38.462 6.22 0.00 35.34 3.11
1473 1706 7.171678 ACTCTCGTTGAAAAGAGGATGTAAAAG 59.828 37.037 9.73 0.00 42.72 2.27
1474 1707 6.990349 ACTCTCGTTGAAAAGAGGATGTAAAA 59.010 34.615 9.73 0.00 42.72 1.52
1475 1708 6.522054 ACTCTCGTTGAAAAGAGGATGTAAA 58.478 36.000 9.73 0.00 42.72 2.01
1476 1709 6.097915 ACTCTCGTTGAAAAGAGGATGTAA 57.902 37.500 9.73 0.00 42.72 2.41
1478 1711 4.608948 ACTCTCGTTGAAAAGAGGATGT 57.391 40.909 9.73 1.90 42.72 3.06
1479 1712 6.390721 TCTTACTCTCGTTGAAAAGAGGATG 58.609 40.000 9.73 4.86 42.72 3.51
1480 1713 6.209788 ACTCTTACTCTCGTTGAAAAGAGGAT 59.790 38.462 21.54 10.42 42.83 3.24
1481 1714 5.535406 ACTCTTACTCTCGTTGAAAAGAGGA 59.465 40.000 21.54 7.32 42.83 3.71
1482 1715 5.774630 ACTCTTACTCTCGTTGAAAAGAGG 58.225 41.667 21.54 1.15 42.83 3.69
1483 1716 9.493206 GTATACTCTTACTCTCGTTGAAAAGAG 57.507 37.037 19.00 19.00 43.45 2.85
1484 1717 9.006839 TGTATACTCTTACTCTCGTTGAAAAGA 57.993 33.333 4.17 0.00 0.00 2.52
1485 1718 9.790389 ATGTATACTCTTACTCTCGTTGAAAAG 57.210 33.333 4.17 0.00 0.00 2.27
1489 1722 9.828039 TCTAATGTATACTCTTACTCTCGTTGA 57.172 33.333 4.17 0.00 0.00 3.18
1498 1731 9.828852 CGGTTCAGATCTAATGTATACTCTTAC 57.171 37.037 4.17 0.00 0.00 2.34
1499 1732 9.570468 ACGGTTCAGATCTAATGTATACTCTTA 57.430 33.333 4.17 1.99 0.00 2.10
1502 1735 8.350722 TCAACGGTTCAGATCTAATGTATACTC 58.649 37.037 4.17 0.00 0.00 2.59
1506 1739 9.862371 GATATCAACGGTTCAGATCTAATGTAT 57.138 33.333 0.00 0.00 0.00 2.29
1507 1740 8.856103 TGATATCAACGGTTCAGATCTAATGTA 58.144 33.333 1.98 0.00 0.00 2.29
1508 1741 7.726216 TGATATCAACGGTTCAGATCTAATGT 58.274 34.615 1.98 0.00 0.00 2.71
1509 1742 8.768957 ATGATATCAACGGTTCAGATCTAATG 57.231 34.615 9.99 0.00 0.00 1.90
1521 1754 9.733556 TGCCTAATTATTAATGATATCAACGGT 57.266 29.630 9.99 0.00 0.00 4.83
1537 1770 9.830975 GGACCATGTTAAAATTTGCCTAATTAT 57.169 29.630 0.00 0.00 35.39 1.28
1538 1771 8.261522 GGGACCATGTTAAAATTTGCCTAATTA 58.738 33.333 0.00 0.00 35.39 1.40
1539 1772 7.037658 AGGGACCATGTTAAAATTTGCCTAATT 60.038 33.333 0.00 0.00 38.08 1.40
1540 1773 6.443527 AGGGACCATGTTAAAATTTGCCTAAT 59.556 34.615 0.00 0.00 0.00 1.73
1541 1774 5.782845 AGGGACCATGTTAAAATTTGCCTAA 59.217 36.000 0.00 0.00 0.00 2.69
1542 1775 5.337788 AGGGACCATGTTAAAATTTGCCTA 58.662 37.500 0.00 0.00 0.00 3.93
1543 1776 4.167319 AGGGACCATGTTAAAATTTGCCT 58.833 39.130 0.00 0.00 0.00 4.75
1544 1777 4.222810 AGAGGGACCATGTTAAAATTTGCC 59.777 41.667 0.00 0.00 0.00 4.52
1545 1778 5.405935 AGAGGGACCATGTTAAAATTTGC 57.594 39.130 0.00 0.00 0.00 3.68
1546 1779 7.178451 AGGTAAGAGGGACCATGTTAAAATTTG 59.822 37.037 0.00 0.00 39.65 2.32
1547 1780 7.246027 AGGTAAGAGGGACCATGTTAAAATTT 58.754 34.615 0.00 0.00 39.65 1.82
1548 1781 6.800890 AGGTAAGAGGGACCATGTTAAAATT 58.199 36.000 0.00 0.00 39.65 1.82
1549 1782 6.402981 AGGTAAGAGGGACCATGTTAAAAT 57.597 37.500 0.00 0.00 39.65 1.82
1550 1783 5.280830 GGAGGTAAGAGGGACCATGTTAAAA 60.281 44.000 0.00 0.00 39.65 1.52
1551 1784 4.226620 GGAGGTAAGAGGGACCATGTTAAA 59.773 45.833 0.00 0.00 39.65 1.52
1552 1785 3.778629 GGAGGTAAGAGGGACCATGTTAA 59.221 47.826 0.00 0.00 39.65 2.01
1553 1786 3.013648 AGGAGGTAAGAGGGACCATGTTA 59.986 47.826 0.00 0.00 39.65 2.41
1554 1787 2.197465 GGAGGTAAGAGGGACCATGTT 58.803 52.381 0.00 0.00 39.65 2.71
1555 1788 1.366435 AGGAGGTAAGAGGGACCATGT 59.634 52.381 0.00 0.00 39.65 3.21
1556 1789 2.182516 AGGAGGTAAGAGGGACCATG 57.817 55.000 0.00 0.00 39.65 3.66
1557 1790 2.972153 AAGGAGGTAAGAGGGACCAT 57.028 50.000 0.00 0.00 39.65 3.55
1558 1791 2.735259 AAAGGAGGTAAGAGGGACCA 57.265 50.000 0.00 0.00 39.65 4.02
1582 1815 7.397476 TGACTCTTATCTTCTTACCTCACATGT 59.603 37.037 0.00 0.00 0.00 3.21
1583 1816 7.776107 TGACTCTTATCTTCTTACCTCACATG 58.224 38.462 0.00 0.00 0.00 3.21
1585 1818 7.776618 TTGACTCTTATCTTCTTACCTCACA 57.223 36.000 0.00 0.00 0.00 3.58
1586 1819 8.470805 TGATTGACTCTTATCTTCTTACCTCAC 58.529 37.037 0.00 0.00 0.00 3.51
1587 1820 8.595362 TGATTGACTCTTATCTTCTTACCTCA 57.405 34.615 0.00 0.00 0.00 3.86
1588 1821 9.528018 CTTGATTGACTCTTATCTTCTTACCTC 57.472 37.037 0.00 0.00 0.00 3.85
1589 1822 7.984617 GCTTGATTGACTCTTATCTTCTTACCT 59.015 37.037 0.00 0.00 0.00 3.08
1590 1823 7.225734 GGCTTGATTGACTCTTATCTTCTTACC 59.774 40.741 0.00 0.00 0.00 2.85
1591 1824 7.766278 TGGCTTGATTGACTCTTATCTTCTTAC 59.234 37.037 0.00 0.00 0.00 2.34
1592 1825 7.851228 TGGCTTGATTGACTCTTATCTTCTTA 58.149 34.615 0.00 0.00 0.00 2.10
1593 1826 6.715280 TGGCTTGATTGACTCTTATCTTCTT 58.285 36.000 0.00 0.00 0.00 2.52
1594 1827 6.305272 TGGCTTGATTGACTCTTATCTTCT 57.695 37.500 0.00 0.00 0.00 2.85
1595 1828 7.281774 TGAATGGCTTGATTGACTCTTATCTTC 59.718 37.037 0.00 0.00 0.00 2.87
1597 1830 6.656902 TGAATGGCTTGATTGACTCTTATCT 58.343 36.000 0.00 0.00 0.00 1.98
1598 1831 6.932356 TGAATGGCTTGATTGACTCTTATC 57.068 37.500 0.00 0.00 0.00 1.75
1599 1832 7.558807 TCAATGAATGGCTTGATTGACTCTTAT 59.441 33.333 7.20 0.00 39.21 1.73
1600 1833 6.885918 TCAATGAATGGCTTGATTGACTCTTA 59.114 34.615 7.20 0.00 39.21 2.10
1602 1835 5.258841 TCAATGAATGGCTTGATTGACTCT 58.741 37.500 7.20 0.00 39.21 3.24
1603 1836 5.571784 TCAATGAATGGCTTGATTGACTC 57.428 39.130 7.20 0.00 39.21 3.36
1604 1837 5.655090 TCATCAATGAATGGCTTGATTGACT 59.345 36.000 11.40 3.03 44.27 3.41
1605 1838 5.898174 TCATCAATGAATGGCTTGATTGAC 58.102 37.500 11.40 0.00 44.27 3.18
1606 1839 5.889289 TCTCATCAATGAATGGCTTGATTGA 59.111 36.000 11.50 11.50 45.12 2.57
1607 1840 6.144078 TCTCATCAATGAATGGCTTGATTG 57.856 37.500 0.00 0.75 39.47 2.67
1608 1841 6.549736 TGATCTCATCAATGAATGGCTTGATT 59.450 34.615 0.00 0.00 39.47 2.57
1610 1843 5.442391 TGATCTCATCAATGAATGGCTTGA 58.558 37.500 0.00 0.00 36.11 3.02
1611 1844 5.767816 TGATCTCATCAATGAATGGCTTG 57.232 39.130 0.00 0.00 36.11 4.01
1622 1855 6.878317 AGATCTTAACCGTTGATCTCATCAA 58.122 36.000 7.85 0.00 46.30 2.57
1623 1856 6.471233 AGATCTTAACCGTTGATCTCATCA 57.529 37.500 7.85 0.00 41.95 3.07
1624 1857 9.482627 AAATAGATCTTAACCGTTGATCTCATC 57.517 33.333 14.35 0.60 43.80 2.92
1625 1858 9.838339 AAAATAGATCTTAACCGTTGATCTCAT 57.162 29.630 14.35 5.73 43.80 2.90
1651 1959 9.475620 TCTTTTCACATGAGAGGTAAGAGTATA 57.524 33.333 0.00 0.00 0.00 1.47
1654 1962 6.672266 TCTTTTCACATGAGAGGTAAGAGT 57.328 37.500 0.00 0.00 0.00 3.24
1662 1970 2.307098 ACCCCCTCTTTTCACATGAGAG 59.693 50.000 0.00 0.00 37.30 3.20
1663 1971 2.348472 ACCCCCTCTTTTCACATGAGA 58.652 47.619 0.00 0.00 0.00 3.27
1665 1973 3.913799 TCTTACCCCCTCTTTTCACATGA 59.086 43.478 0.00 0.00 0.00 3.07
1668 1976 2.642807 CCTCTTACCCCCTCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
1670 1978 2.157911 TCCCTCTTACCCCCTCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
1672 1980 2.276391 GTCCCTCTTACCCCCTCTTTT 58.724 52.381 0.00 0.00 0.00 2.27
1674 1982 0.044397 GGTCCCTCTTACCCCCTCTT 59.956 60.000 0.00 0.00 0.00 2.85
1675 1983 1.160289 TGGTCCCTCTTACCCCCTCT 61.160 60.000 0.00 0.00 36.06 3.69
1677 1985 0.327576 CATGGTCCCTCTTACCCCCT 60.328 60.000 0.00 0.00 36.06 4.79
1678 1986 0.623617 ACATGGTCCCTCTTACCCCC 60.624 60.000 0.00 0.00 36.06 5.40
1679 1987 1.296002 AACATGGTCCCTCTTACCCC 58.704 55.000 0.00 0.00 36.06 4.95
1681 1989 5.414765 CAGTTTTAACATGGTCCCTCTTACC 59.585 44.000 0.00 0.00 37.53 2.85
1684 1992 3.826729 GCAGTTTTAACATGGTCCCTCTT 59.173 43.478 0.00 0.00 0.00 2.85
1700 2008 8.886719 GGTAACCGTTAATTATTAGAGCAGTTT 58.113 33.333 0.00 0.00 0.00 2.66
1703 2011 8.658499 AAGGTAACCGTTAATTATTAGAGCAG 57.342 34.615 0.00 0.00 37.17 4.24
1740 2048 9.369672 TGCTCCTTTTTACCCTTTCTTTTTATA 57.630 29.630 0.00 0.00 0.00 0.98
1741 2049 8.257602 TGCTCCTTTTTACCCTTTCTTTTTAT 57.742 30.769 0.00 0.00 0.00 1.40
1742 2050 7.663043 TGCTCCTTTTTACCCTTTCTTTTTA 57.337 32.000 0.00 0.00 0.00 1.52
1743 2051 6.553953 TGCTCCTTTTTACCCTTTCTTTTT 57.446 33.333 0.00 0.00 0.00 1.94
1744 2052 6.099701 ACATGCTCCTTTTTACCCTTTCTTTT 59.900 34.615 0.00 0.00 0.00 2.27
1745 2053 5.602561 ACATGCTCCTTTTTACCCTTTCTTT 59.397 36.000 0.00 0.00 0.00 2.52
1746 2054 5.147767 ACATGCTCCTTTTTACCCTTTCTT 58.852 37.500 0.00 0.00 0.00 2.52
1747 2055 4.740902 ACATGCTCCTTTTTACCCTTTCT 58.259 39.130 0.00 0.00 0.00 2.52
1748 2056 5.468540 AACATGCTCCTTTTTACCCTTTC 57.531 39.130 0.00 0.00 0.00 2.62
1749 2057 6.987403 TTAACATGCTCCTTTTTACCCTTT 57.013 33.333 0.00 0.00 0.00 3.11
1750 2058 6.553476 ACTTTAACATGCTCCTTTTTACCCTT 59.447 34.615 0.00 0.00 0.00 3.95
1751 2059 6.075315 ACTTTAACATGCTCCTTTTTACCCT 58.925 36.000 0.00 0.00 0.00 4.34
1753 2061 7.307160 GCAAACTTTAACATGCTCCTTTTTACC 60.307 37.037 0.00 0.00 35.93 2.85
1754 2062 7.438160 AGCAAACTTTAACATGCTCCTTTTTAC 59.562 33.333 0.00 0.00 45.49 2.01
1755 2063 7.496747 AGCAAACTTTAACATGCTCCTTTTTA 58.503 30.769 0.00 0.00 45.49 1.52
1756 2064 6.348498 AGCAAACTTTAACATGCTCCTTTTT 58.652 32.000 0.00 0.00 45.49 1.94
1764 2072 6.208644 TCTCAAAGAGCAAACTTTAACATGC 58.791 36.000 0.00 0.00 37.91 4.06
1765 2073 6.860023 CCTCTCAAAGAGCAAACTTTAACATG 59.140 38.462 0.00 0.00 40.98 3.21
1766 2074 6.015940 CCCTCTCAAAGAGCAAACTTTAACAT 60.016 38.462 0.00 0.00 40.98 2.71
1767 2075 5.299279 CCCTCTCAAAGAGCAAACTTTAACA 59.701 40.000 0.00 0.00 40.98 2.41
1768 2076 5.531287 TCCCTCTCAAAGAGCAAACTTTAAC 59.469 40.000 0.00 0.00 40.98 2.01
1769 2077 5.690865 TCCCTCTCAAAGAGCAAACTTTAA 58.309 37.500 0.00 0.00 40.98 1.52
1770 2078 5.071788 TCTCCCTCTCAAAGAGCAAACTTTA 59.928 40.000 0.00 0.00 40.98 1.85
1771 2079 4.140536 CTCCCTCTCAAAGAGCAAACTTT 58.859 43.478 0.00 0.00 40.98 2.66
1772 2080 3.392616 TCTCCCTCTCAAAGAGCAAACTT 59.607 43.478 0.00 0.00 40.98 2.66
1773 2081 2.975489 TCTCCCTCTCAAAGAGCAAACT 59.025 45.455 0.00 0.00 40.98 2.66
1774 2082 3.409026 TCTCCCTCTCAAAGAGCAAAC 57.591 47.619 0.00 0.00 40.98 2.93
1775 2083 4.647564 AATCTCCCTCTCAAAGAGCAAA 57.352 40.909 0.00 0.00 40.98 3.68
1776 2084 4.288105 AGAAATCTCCCTCTCAAAGAGCAA 59.712 41.667 0.00 0.00 40.98 3.91
1778 2086 4.162131 AGAGAAATCTCCCTCTCAAAGAGC 59.838 45.833 6.81 0.00 43.88 4.09
1786 2094 3.012274 TCAGGTGAGAGAAATCTCCCTCT 59.988 47.826 6.81 0.00 43.88 3.69
1787 2095 3.370104 TCAGGTGAGAGAAATCTCCCTC 58.630 50.000 6.81 0.44 43.88 4.30
1788 2096 3.481559 TCAGGTGAGAGAAATCTCCCT 57.518 47.619 6.81 4.18 43.88 4.20
1791 2099 3.465871 GCCATCAGGTGAGAGAAATCTC 58.534 50.000 2.10 2.10 39.18 2.75
1803 2111 1.194781 AGAGTTGGTCGCCATCAGGT 61.195 55.000 8.86 0.00 37.19 4.00
1804 2112 0.824109 TAGAGTTGGTCGCCATCAGG 59.176 55.000 8.86 0.00 31.53 3.86
1807 2115 1.146358 GCGTAGAGTTGGTCGCCATC 61.146 60.000 0.00 0.00 42.33 3.51
1845 3202 2.741228 CGCCTTAGCAAGAATCTGAGCT 60.741 50.000 13.65 13.65 39.83 4.09
1848 3205 2.739932 GCTCGCCTTAGCAAGAATCTGA 60.740 50.000 0.00 0.00 42.30 3.27
1875 3232 2.091830 TGAGTACTCCTCCGATGTCCAT 60.092 50.000 20.11 0.00 39.65 3.41
1902 3259 2.104111 TGACTCTTGGTTGGTCGTCATT 59.896 45.455 0.00 0.00 33.21 2.57
1906 3263 2.897969 AGTATGACTCTTGGTTGGTCGT 59.102 45.455 0.00 0.00 34.25 4.34
1923 3280 0.543749 GCTGGCTGAGGTGGAAGTAT 59.456 55.000 0.00 0.00 0.00 2.12
1975 3332 2.070039 CAATGCTACCTCCCCCGGA 61.070 63.158 0.73 0.00 0.00 5.14
1980 3337 2.489938 TGTTGACAATGCTACCTCCC 57.510 50.000 0.00 0.00 0.00 4.30
1992 3349 2.158623 GGCATGGGAGGATATGTTGACA 60.159 50.000 0.00 0.00 0.00 3.58
2458 6066 3.761897 TGTGAATTTCATCCGGGAGTTT 58.238 40.909 0.00 0.00 0.00 2.66
2714 6322 3.354472 TAGAGGAGGAAGCCGCGGA 62.354 63.158 33.48 0.00 32.50 5.54
2771 6379 1.938861 GCGTTTTGCCTGACTCGAA 59.061 52.632 0.00 0.00 37.76 3.71
2772 6380 3.637714 GCGTTTTGCCTGACTCGA 58.362 55.556 0.00 0.00 37.76 4.04
2917 6525 1.203187 TCCGCTAGATAGCCATTCCCT 60.203 52.381 6.28 0.00 46.34 4.20
3140 6749 0.101759 CCTAGGACGCCGAAAATCGA 59.898 55.000 1.05 0.00 43.74 3.59
3335 6946 2.892374 TGTAGAATCTGATGGTGCGTG 58.108 47.619 0.00 0.00 0.00 5.34
3753 7535 5.248248 TGTCTCTGGACTATTGGATTTGTCA 59.752 40.000 0.00 0.00 42.54 3.58
3765 7548 4.866508 ACAACGAAATGTCTCTGGACTA 57.133 40.909 0.00 0.00 42.54 2.59
3772 7555 3.302699 GCCTACGTACAACGAAATGTCTC 59.697 47.826 6.44 0.00 46.05 3.36
3805 7588 1.616374 TCCTCACGCTGTTACACATGA 59.384 47.619 0.00 0.00 0.00 3.07
3866 7649 7.771183 ACTAATTAACACCCATGTAGCAATTG 58.229 34.615 0.00 0.00 38.45 2.32
3901 7684 6.523893 GGCAAACACGCGTTTAAGAAAATATA 59.476 34.615 10.22 0.00 43.57 0.86
3904 7687 3.487942 GGCAAACACGCGTTTAAGAAAAT 59.512 39.130 10.22 0.00 43.57 1.82
3919 7704 7.040271 GGTTAACTTAATAGACAAGGGCAAACA 60.040 37.037 5.42 0.00 0.00 2.83
3920 7705 7.310664 GGTTAACTTAATAGACAAGGGCAAAC 58.689 38.462 5.42 0.00 0.00 2.93
3930 7715 9.591792 AGGAAATACACGGTTAACTTAATAGAC 57.408 33.333 5.42 0.00 0.00 2.59
3937 7722 6.949715 TCCATAGGAAATACACGGTTAACTT 58.050 36.000 5.42 0.00 0.00 2.66
3946 7731 8.263640 AGAGATATGCATCCATAGGAAATACAC 58.736 37.037 0.19 0.00 37.36 2.90
3960 7745 6.475076 CAGCCTAACGATTAGAGATATGCATC 59.525 42.308 0.19 0.00 35.20 3.91
3963 7748 5.955488 TCAGCCTAACGATTAGAGATATGC 58.045 41.667 0.00 0.00 35.20 3.14
3964 7749 8.994429 ATTTCAGCCTAACGATTAGAGATATG 57.006 34.615 0.00 0.00 35.20 1.78
3980 7765 7.397192 ACAAATAATGTTCCTGTATTTCAGCCT 59.603 33.333 0.00 0.00 40.06 4.58
4051 7836 4.429108 TCTTTGTTTGTGCTTTAGGTTGC 58.571 39.130 0.00 0.00 0.00 4.17
4055 7840 6.811170 TCTTTGTTCTTTGTTTGTGCTTTAGG 59.189 34.615 0.00 0.00 0.00 2.69
4056 7841 7.810766 TCTTTGTTCTTTGTTTGTGCTTTAG 57.189 32.000 0.00 0.00 0.00 1.85
4059 7844 6.397272 TGATCTTTGTTCTTTGTTTGTGCTT 58.603 32.000 0.00 0.00 0.00 3.91
4063 7848 7.330262 ACCAATGATCTTTGTTCTTTGTTTGT 58.670 30.769 17.35 4.37 30.39 2.83
4066 7851 8.695456 ACTTACCAATGATCTTTGTTCTTTGTT 58.305 29.630 17.35 0.00 30.39 2.83
4104 7897 2.416972 GCGGTAAGGACTTCACTTCGAT 60.417 50.000 0.00 0.00 0.00 3.59
4124 7918 0.457443 GTTCATAAAGCCAGGCCAGC 59.543 55.000 8.22 7.78 0.00 4.85
4136 7930 2.225491 GACCTTGTTGCAGCGTTCATAA 59.775 45.455 0.00 0.00 0.00 1.90
4147 7941 4.683334 GGCGTGCGACCTTGTTGC 62.683 66.667 0.00 0.00 42.77 4.17
4149 7943 3.276846 GTGGCGTGCGACCTTGTT 61.277 61.111 0.00 0.00 0.00 2.83
4182 7985 0.041535 TAAGTAGGCGGGAAGGACCA 59.958 55.000 0.00 0.00 41.20 4.02
4216 8019 1.573108 TGAAAGGGCGGAGAGAAGAT 58.427 50.000 0.00 0.00 0.00 2.40
4231 8034 1.000233 ATCCGGGGCAGCAATGAAA 60.000 52.632 0.00 0.00 0.00 2.69
4245 8048 2.061773 GTGCGATAACTGGATCATCCG 58.938 52.381 0.00 0.00 40.17 4.18
4294 8098 0.041090 GGGATGGTGTGGTTGGGAAT 59.959 55.000 0.00 0.00 0.00 3.01
4301 8105 1.616628 GGAGGAGGGATGGTGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
4306 8110 1.386485 CATGGGGAGGAGGGATGGT 60.386 63.158 0.00 0.00 0.00 3.55
4373 8177 0.892814 TGCATCAATGGCGTCAACCA 60.893 50.000 0.00 0.00 45.82 3.67
4389 8193 3.205395 GGCAACACCTTGTGTGCA 58.795 55.556 17.23 0.00 46.79 4.57
4404 8208 4.302455 GGAAAAAGCAAAGAAAGAGAGGC 58.698 43.478 0.00 0.00 0.00 4.70
4425 8266 5.840243 TTCAACATGATCTAAATGCTGGG 57.160 39.130 0.00 0.00 0.00 4.45
4432 8273 9.230122 TGCTTACTCATTTCAACATGATCTAAA 57.770 29.630 0.00 0.00 32.59 1.85
4482 8323 9.138062 CGAATGATTTTTCATTAATTGTCACCA 57.862 29.630 1.43 0.00 40.08 4.17
4485 8326 9.571810 CCTCGAATGATTTTTCATTAATTGTCA 57.428 29.630 1.43 0.00 40.08 3.58
4486 8327 9.787532 TCCTCGAATGATTTTTCATTAATTGTC 57.212 29.630 1.43 0.00 40.08 3.18
4487 8328 9.793252 CTCCTCGAATGATTTTTCATTAATTGT 57.207 29.630 1.43 0.00 40.08 2.71
4488 8329 9.241317 CCTCCTCGAATGATTTTTCATTAATTG 57.759 33.333 1.43 0.00 40.08 2.32
4489 8330 9.189156 TCCTCCTCGAATGATTTTTCATTAATT 57.811 29.630 1.43 0.00 40.08 1.40
4490 8331 8.752005 TCCTCCTCGAATGATTTTTCATTAAT 57.248 30.769 1.43 0.00 40.08 1.40
4491 8332 8.574251 TTCCTCCTCGAATGATTTTTCATTAA 57.426 30.769 1.43 0.00 40.08 1.40
4492 8333 8.752005 ATTCCTCCTCGAATGATTTTTCATTA 57.248 30.769 1.43 0.00 40.08 1.90
4506 8347 7.798710 ATGAATCCTAAATATTCCTCCTCGA 57.201 36.000 0.00 0.00 33.28 4.04
4518 8359 3.580039 CCCTGGGCAATGAATCCTAAAT 58.420 45.455 0.00 0.00 0.00 1.40
4536 8377 1.496429 AGAATTTCATCGCCATCCCCT 59.504 47.619 0.00 0.00 0.00 4.79
4538 8379 1.610522 CCAGAATTTCATCGCCATCCC 59.389 52.381 0.00 0.00 0.00 3.85
4557 8398 3.893200 TGCCAAAATCATCATCATCCTCC 59.107 43.478 0.00 0.00 0.00 4.30
4575 8416 1.234615 GCAAAAGAGCTACCGTGCCA 61.235 55.000 0.00 0.00 0.00 4.92
4600 8441 0.400213 TTGTTGCCCTCGTCCATCTT 59.600 50.000 0.00 0.00 0.00 2.40
4622 8463 3.059188 CGGTTGAGAACGTGTATGCTTTT 60.059 43.478 0.00 0.00 0.00 2.27
4633 8474 1.959226 CACACCCCGGTTGAGAACG 60.959 63.158 0.00 0.00 0.00 3.95
4675 8516 8.909708 CAAATTATTCACACATACGATGGTTT 57.090 30.769 0.00 0.00 33.60 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.