Multiple sequence alignment - TraesCS1A01G383300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G383300 chr1A 100.000 2791 0 0 1 2791 554017256 554020046 0.000000e+00 5155.0
1 TraesCS1A01G383300 chr1A 93.312 314 20 1 2478 2791 130348772 130348460 1.960000e-126 462.0
2 TraesCS1A01G383300 chr1A 94.872 39 2 0 1930 1968 534433774 534433736 8.350000e-06 62.1
3 TraesCS1A01G383300 chr1D 89.778 2250 102 50 1 2180 462147492 462149683 0.000000e+00 2763.0
4 TraesCS1A01G383300 chr1D 95.376 346 14 2 2448 2791 122237764 122238109 1.460000e-152 549.0
5 TraesCS1A01G383300 chr1D 93.750 80 5 0 2307 2386 462149730 462149809 1.360000e-23 121.0
6 TraesCS1A01G383300 chr1B 91.475 1912 82 29 1 1864 636794992 636796870 0.000000e+00 2553.0
7 TraesCS1A01G383300 chr1B 91.597 119 7 2 1992 2110 636796997 636797112 8.000000e-36 161.0
8 TraesCS1A01G383300 chr1B 89.130 46 4 1 1929 1974 424085416 424085372 3.880000e-04 56.5
9 TraesCS1A01G383300 chr3B 88.080 948 69 25 771 1707 23360665 23361579 0.000000e+00 1085.0
10 TraesCS1A01G383300 chr3B 79.545 264 49 5 2447 2709 419808713 419808972 1.710000e-42 183.0
11 TraesCS1A01G383300 chr3B 83.495 206 13 2 1996 2180 8547718 8547923 3.700000e-39 172.0
12 TraesCS1A01G383300 chr3B 97.619 42 1 0 2223 2264 8547931 8547972 3.860000e-09 73.1
13 TraesCS1A01G383300 chr5A 87.447 948 72 24 771 1707 632263654 632262743 0.000000e+00 1048.0
14 TraesCS1A01G383300 chr2A 96.165 339 13 0 2453 2791 163053227 163052889 3.140000e-154 555.0
15 TraesCS1A01G383300 chr2A 82.353 306 52 2 2454 2757 423196078 423195773 5.930000e-67 265.0
16 TraesCS1A01G383300 chr6A 82.540 378 36 18 771 1142 2845320 2845673 3.490000e-79 305.0
17 TraesCS1A01G383300 chr6B 83.168 303 49 2 2454 2754 4412027 4412329 2.740000e-70 276.0
18 TraesCS1A01G383300 chr6B 82.026 306 53 2 2454 2757 550605072 550604767 2.760000e-65 259.0
19 TraesCS1A01G383300 chr6B 92.857 42 2 1 1926 1966 645111674 645111633 3.000000e-05 60.2
20 TraesCS1A01G383300 chr2D 88.172 186 20 1 1996 2181 15335366 15335549 1.300000e-53 220.0
21 TraesCS1A01G383300 chr2D 89.362 47 4 1 1920 1966 593370365 593370410 1.080000e-04 58.4
22 TraesCS1A01G383300 chr7D 82.114 246 43 1 2453 2697 573394514 573394759 2.820000e-50 209.0
23 TraesCS1A01G383300 chr3A 79.845 258 50 2 2453 2709 514398352 514398096 1.320000e-43 187.0
24 TraesCS1A01G383300 chr4A 97.436 39 1 0 2334 2372 695724046 695724008 1.790000e-07 67.6
25 TraesCS1A01G383300 chr4D 93.023 43 3 0 1929 1971 9440949 9440907 2.320000e-06 63.9
26 TraesCS1A01G383300 chr5D 94.872 39 2 0 1929 1967 443263434 443263396 8.350000e-06 62.1
27 TraesCS1A01G383300 chr2B 92.857 42 3 0 1929 1970 135357551 135357510 8.350000e-06 62.1
28 TraesCS1A01G383300 chr6D 92.683 41 3 0 1929 1969 190909312 190909272 3.000000e-05 60.2
29 TraesCS1A01G383300 chr3D 90.698 43 4 0 1929 1971 418123397 418123439 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G383300 chr1A 554017256 554020046 2790 False 5155 5155 100.000 1 2791 1 chr1A.!!$F1 2790
1 TraesCS1A01G383300 chr1D 462147492 462149809 2317 False 1442 2763 91.764 1 2386 2 chr1D.!!$F2 2385
2 TraesCS1A01G383300 chr1B 636794992 636797112 2120 False 1357 2553 91.536 1 2110 2 chr1B.!!$F1 2109
3 TraesCS1A01G383300 chr3B 23360665 23361579 914 False 1085 1085 88.080 771 1707 1 chr3B.!!$F1 936
4 TraesCS1A01G383300 chr5A 632262743 632263654 911 True 1048 1048 87.447 771 1707 1 chr5A.!!$R1 936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 344 0.10212 CAAACCAGTTGCCGCAAAGA 59.898 50.0 7.54 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2398 0.035152 TGCGCCAGATGAAATGGACT 60.035 50.0 4.18 0.0 40.51 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.986833 CAATTTCCAAAGGTAAAAACTCAAAAG 57.013 29.630 0.00 0.00 0.00 2.27
75 76 3.734463 TCAAAAGGAGACGTACATGCAA 58.266 40.909 0.00 0.00 0.00 4.08
95 96 4.201950 GCAACTATACATGGGCAAACTCTG 60.202 45.833 0.00 0.00 0.00 3.35
159 160 3.704231 CTAGCGCTGGCCAATGGGT 62.704 63.158 22.90 7.10 41.24 4.51
216 223 1.999735 CATGTATTGCGTTGACGAGGT 59.000 47.619 7.85 0.00 43.02 3.85
292 302 5.784578 TGTGCTCAGTCTGTAAGAGTTAA 57.215 39.130 0.00 0.00 46.68 2.01
326 336 3.451141 TGATCAAACCAAACCAGTTGC 57.549 42.857 0.00 0.00 35.74 4.17
327 337 2.102252 TGATCAAACCAAACCAGTTGCC 59.898 45.455 0.00 0.00 35.74 4.52
328 338 0.457851 TCAAACCAAACCAGTTGCCG 59.542 50.000 0.00 0.00 35.74 5.69
329 339 1.142965 AAACCAAACCAGTTGCCGC 59.857 52.632 0.00 0.00 35.74 6.53
330 340 1.608717 AAACCAAACCAGTTGCCGCA 61.609 50.000 0.00 0.00 35.74 5.69
332 342 1.142748 CCAAACCAGTTGCCGCAAA 59.857 52.632 7.54 0.00 35.74 3.68
333 343 0.875474 CCAAACCAGTTGCCGCAAAG 60.875 55.000 7.54 3.61 35.74 2.77
334 344 0.102120 CAAACCAGTTGCCGCAAAGA 59.898 50.000 7.54 0.00 0.00 2.52
335 345 0.820871 AAACCAGTTGCCGCAAAGAA 59.179 45.000 7.54 0.00 0.00 2.52
374 397 4.590850 AAAAAGGGATGCAGTCAAACTC 57.409 40.909 0.00 0.00 0.00 3.01
378 401 1.457346 GGATGCAGTCAAACTCAGGG 58.543 55.000 0.00 0.00 0.00 4.45
383 406 3.942829 TGCAGTCAAACTCAGGGAATAG 58.057 45.455 0.00 0.00 0.00 1.73
386 409 4.081420 GCAGTCAAACTCAGGGAATAGAGA 60.081 45.833 0.00 0.00 35.83 3.10
435 458 2.879907 GGTCACGTACAGCCGCTA 59.120 61.111 0.00 0.00 0.00 4.26
453 476 3.356290 GCTATCTTTTTGCCTCCTTGGA 58.644 45.455 0.00 0.00 38.35 3.53
537 560 2.440539 AGCAAACCAGACAGTACTCG 57.559 50.000 0.00 0.00 0.00 4.18
713 741 1.128692 CGAAACGGAGAGCATTGTTCC 59.871 52.381 0.00 0.00 0.00 3.62
731 759 3.538614 GAGGGTATCTCGCCTGCA 58.461 61.111 0.00 0.00 32.18 4.41
768 796 2.955660 CACTCTCCATCCTCACTACTCC 59.044 54.545 0.00 0.00 0.00 3.85
791 819 1.771073 TTTGACTCCGCGTGCACTTG 61.771 55.000 16.19 6.75 0.00 3.16
821 863 0.835941 GCTGTCCATCCATCCTCACT 59.164 55.000 0.00 0.00 0.00 3.41
822 864 1.202627 GCTGTCCATCCATCCTCACTC 60.203 57.143 0.00 0.00 0.00 3.51
823 865 2.113807 CTGTCCATCCATCCTCACTCA 58.886 52.381 0.00 0.00 0.00 3.41
982 1028 1.689233 CCAGCCAGTAGCCACCCTA 60.689 63.158 0.00 0.00 45.47 3.53
1000 1046 0.391130 TACACCAGGCGCATCAGTTC 60.391 55.000 10.83 0.00 0.00 3.01
1001 1047 2.045926 ACCAGGCGCATCAGTTCC 60.046 61.111 10.83 0.00 0.00 3.62
1065 1112 1.283347 AGCTTTGATGGAGAGCAGGA 58.717 50.000 0.00 0.00 38.85 3.86
1223 1273 1.079819 GTGCGGCTACTGCAAGAGA 60.080 57.895 2.03 0.00 45.23 3.10
1588 1638 4.263018 TGACTCTTCAGGACTGACATTG 57.737 45.455 0.67 0.00 39.66 2.82
1598 1648 4.509230 CAGGACTGACATTGTAATCCATCG 59.491 45.833 13.23 1.91 0.00 3.84
1602 1655 5.917462 ACTGACATTGTAATCCATCGATCA 58.083 37.500 0.00 0.00 0.00 2.92
1618 1677 9.513906 TCCATCGATCAATCTATCTATCTATCC 57.486 37.037 0.00 0.00 0.00 2.59
1707 1766 2.717580 ACGAGAAACGCAGTGATGTA 57.282 45.000 0.00 0.00 45.00 2.29
1708 1767 3.021269 ACGAGAAACGCAGTGATGTAA 57.979 42.857 0.00 0.00 45.00 2.41
1709 1768 2.987149 ACGAGAAACGCAGTGATGTAAG 59.013 45.455 0.00 0.00 45.00 2.34
1710 1769 3.242518 CGAGAAACGCAGTGATGTAAGA 58.757 45.455 0.00 0.00 45.00 2.10
1711 1770 3.859961 CGAGAAACGCAGTGATGTAAGAT 59.140 43.478 0.00 0.00 45.00 2.40
1712 1771 4.259570 CGAGAAACGCAGTGATGTAAGATG 60.260 45.833 0.00 0.00 45.00 2.90
1713 1772 4.569943 AGAAACGCAGTGATGTAAGATGT 58.430 39.130 0.00 0.00 45.00 3.06
1739 1801 9.459640 TTCTAACTATGTAGTATGTCGATTTGC 57.540 33.333 0.00 0.00 34.99 3.68
1743 1805 3.792401 TGTAGTATGTCGATTTGCAGGG 58.208 45.455 0.00 0.00 0.00 4.45
1747 1809 0.038166 ATGTCGATTTGCAGGGGTGT 59.962 50.000 0.00 0.00 0.00 4.16
1748 1810 0.687920 TGTCGATTTGCAGGGGTGTA 59.312 50.000 0.00 0.00 0.00 2.90
1749 1811 1.280710 TGTCGATTTGCAGGGGTGTAT 59.719 47.619 0.00 0.00 0.00 2.29
1779 1842 6.746104 TTCAAGCACGTGAACAATTAATTG 57.254 33.333 23.60 23.60 43.26 2.32
1803 1866 8.263940 TGTAACTTGTATTAGCTTGATTGGTC 57.736 34.615 0.00 0.00 0.00 4.02
1906 1994 9.956720 GCAAAATCAGCTCTATATGTAACAAAT 57.043 29.630 0.00 0.00 0.00 2.32
1942 2030 5.554822 TTTGTACTCTTGCAAAAACGTCT 57.445 34.783 0.00 0.00 34.74 4.18
1943 2031 5.554822 TTGTACTCTTGCAAAAACGTCTT 57.445 34.783 0.00 0.00 0.00 3.01
1944 2032 6.665474 TTGTACTCTTGCAAAAACGTCTTA 57.335 33.333 0.00 0.00 0.00 2.10
1945 2033 6.854496 TGTACTCTTGCAAAAACGTCTTAT 57.146 33.333 0.00 0.00 0.00 1.73
1946 2034 7.949903 TGTACTCTTGCAAAAACGTCTTATA 57.050 32.000 0.00 0.00 0.00 0.98
1949 2064 9.262472 GTACTCTTGCAAAAACGTCTTATATTG 57.738 33.333 0.00 0.00 0.00 1.90
1952 2067 7.081349 TCTTGCAAAAACGTCTTATATTGTGG 58.919 34.615 0.00 0.00 0.00 4.17
1956 2071 6.568844 GCAAAAACGTCTTATATTGTGGGACA 60.569 38.462 0.00 0.00 0.00 4.02
1957 2072 7.364200 CAAAAACGTCTTATATTGTGGGACAA 58.636 34.615 0.00 0.00 44.16 3.18
1962 2077 4.887655 GTCTTATATTGTGGGACAAAGGGG 59.112 45.833 0.00 0.00 44.16 4.79
1963 2078 2.846665 ATATTGTGGGACAAAGGGGG 57.153 50.000 0.00 0.00 44.16 5.40
1985 2100 6.371271 GGGGTATTAACTTTTGCGTTACTACA 59.629 38.462 10.98 0.00 37.30 2.74
1986 2101 7.094848 GGGGTATTAACTTTTGCGTTACTACAA 60.095 37.037 10.98 0.00 37.30 2.41
2157 2289 5.496387 CAAATCGCTCTACTAAGCAACATG 58.504 41.667 0.00 0.00 42.62 3.21
2173 2305 3.818961 ACATGCAGTGAAAATGAGACG 57.181 42.857 0.00 0.00 30.28 4.18
2180 2312 5.700832 TGCAGTGAAAATGAGACGAATACTT 59.299 36.000 0.00 0.00 30.28 2.24
2181 2313 6.204688 TGCAGTGAAAATGAGACGAATACTTT 59.795 34.615 0.00 0.00 30.28 2.66
2182 2314 7.078228 GCAGTGAAAATGAGACGAATACTTTT 58.922 34.615 0.00 0.00 30.28 2.27
2183 2315 8.227791 GCAGTGAAAATGAGACGAATACTTTTA 58.772 33.333 0.00 0.00 30.28 1.52
2184 2316 9.530129 CAGTGAAAATGAGACGAATACTTTTAC 57.470 33.333 0.00 0.00 30.28 2.01
2185 2317 9.490379 AGTGAAAATGAGACGAATACTTTTACT 57.510 29.630 0.00 0.00 0.00 2.24
2228 2360 4.927978 AATGAGACGAATACTGAGAGGG 57.072 45.455 0.00 0.00 0.00 4.30
2232 2364 3.547746 AGACGAATACTGAGAGGGAGAC 58.452 50.000 0.00 0.00 0.00 3.36
2250 2382 2.355837 GTGAGCGCGTGAGGTTCA 60.356 61.111 8.43 0.00 0.00 3.18
2272 2404 3.641434 CTGGATTTCAGGTGAGTCCAT 57.359 47.619 13.50 0.00 38.83 3.41
2273 2405 3.960571 CTGGATTTCAGGTGAGTCCATT 58.039 45.455 13.50 0.00 38.83 3.16
2274 2406 4.338879 CTGGATTTCAGGTGAGTCCATTT 58.661 43.478 13.50 0.00 38.83 2.32
2275 2407 4.335416 TGGATTTCAGGTGAGTCCATTTC 58.665 43.478 10.52 0.00 36.44 2.17
2276 2408 4.202556 TGGATTTCAGGTGAGTCCATTTCA 60.203 41.667 10.52 0.00 36.44 2.69
2277 2409 4.952335 GGATTTCAGGTGAGTCCATTTCAT 59.048 41.667 8.04 0.00 39.02 2.57
2278 2410 5.067023 GGATTTCAGGTGAGTCCATTTCATC 59.933 44.000 8.04 0.00 39.02 2.92
2279 2411 4.916041 TTCAGGTGAGTCCATTTCATCT 57.084 40.909 0.00 0.00 36.47 2.90
2281 2413 3.276857 CAGGTGAGTCCATTTCATCTGG 58.723 50.000 7.46 0.00 45.67 3.86
2282 2414 2.019984 GGTGAGTCCATTTCATCTGGC 58.980 52.381 0.00 0.00 35.97 4.85
2283 2415 1.667724 GTGAGTCCATTTCATCTGGCG 59.332 52.381 0.00 0.00 33.56 5.69
2284 2416 0.659957 GAGTCCATTTCATCTGGCGC 59.340 55.000 0.00 0.00 33.56 6.53
2285 2417 0.035152 AGTCCATTTCATCTGGCGCA 60.035 50.000 10.83 0.00 33.56 6.09
2286 2418 1.027357 GTCCATTTCATCTGGCGCAT 58.973 50.000 10.83 0.00 33.56 4.73
2287 2419 2.158769 AGTCCATTTCATCTGGCGCATA 60.159 45.455 10.83 0.00 33.56 3.14
2288 2420 2.618241 GTCCATTTCATCTGGCGCATAA 59.382 45.455 10.83 0.00 33.56 1.90
2289 2421 2.880268 TCCATTTCATCTGGCGCATAAG 59.120 45.455 10.83 3.32 33.56 1.73
2290 2422 2.880268 CCATTTCATCTGGCGCATAAGA 59.120 45.455 10.83 9.62 0.00 2.10
2291 2423 3.316029 CCATTTCATCTGGCGCATAAGAA 59.684 43.478 10.83 3.42 0.00 2.52
2292 2424 4.202040 CCATTTCATCTGGCGCATAAGAAA 60.202 41.667 10.83 12.76 0.00 2.52
2293 2425 5.342433 CATTTCATCTGGCGCATAAGAAAA 58.658 37.500 10.83 7.87 0.00 2.29
2294 2426 4.355543 TTCATCTGGCGCATAAGAAAAC 57.644 40.909 10.83 0.00 0.00 2.43
2295 2427 3.342719 TCATCTGGCGCATAAGAAAACA 58.657 40.909 10.83 0.00 0.00 2.83
2296 2428 3.947196 TCATCTGGCGCATAAGAAAACAT 59.053 39.130 10.83 0.00 0.00 2.71
2297 2429 4.398988 TCATCTGGCGCATAAGAAAACATT 59.601 37.500 10.83 0.00 0.00 2.71
2298 2430 5.588246 TCATCTGGCGCATAAGAAAACATTA 59.412 36.000 10.83 0.00 0.00 1.90
2299 2431 5.484173 TCTGGCGCATAAGAAAACATTAG 57.516 39.130 10.83 0.00 0.00 1.73
2300 2432 5.182487 TCTGGCGCATAAGAAAACATTAGA 58.818 37.500 10.83 0.00 0.00 2.10
2301 2433 5.645929 TCTGGCGCATAAGAAAACATTAGAA 59.354 36.000 10.83 0.00 0.00 2.10
2302 2434 5.636837 TGGCGCATAAGAAAACATTAGAAC 58.363 37.500 10.83 0.00 0.00 3.01
2303 2435 5.034797 GGCGCATAAGAAAACATTAGAACC 58.965 41.667 10.83 0.00 0.00 3.62
2304 2436 5.163652 GGCGCATAAGAAAACATTAGAACCT 60.164 40.000 10.83 0.00 0.00 3.50
2305 2437 6.037830 GGCGCATAAGAAAACATTAGAACCTA 59.962 38.462 10.83 0.00 0.00 3.08
2341 2473 9.110502 GACTAGTAATAGTCTTTCATTTTGGGG 57.889 37.037 20.34 0.00 42.29 4.96
2348 2480 2.112691 TCTTTCATTTTGGGGCCCCTAA 59.887 45.455 40.66 35.88 36.94 2.69
2386 2518 1.690219 AACTGGGGAGCTCCTATGCG 61.690 60.000 31.36 17.29 38.13 4.73
2387 2519 2.844362 TGGGGAGCTCCTATGCGG 60.844 66.667 31.36 0.00 38.13 5.69
2388 2520 2.524394 GGGGAGCTCCTATGCGGA 60.524 66.667 31.36 0.00 40.30 5.54
2389 2521 2.140792 GGGGAGCTCCTATGCGGAA 61.141 63.158 31.36 0.00 42.53 4.30
2390 2522 1.696097 GGGGAGCTCCTATGCGGAAA 61.696 60.000 31.36 0.00 42.53 3.13
2391 2523 0.180406 GGGAGCTCCTATGCGGAAAA 59.820 55.000 31.36 0.00 42.53 2.29
2392 2524 1.300481 GGAGCTCCTATGCGGAAAAC 58.700 55.000 26.25 0.00 42.53 2.43
2393 2525 1.300481 GAGCTCCTATGCGGAAAACC 58.700 55.000 0.87 0.00 42.53 3.27
2394 2526 0.107165 AGCTCCTATGCGGAAAACCC 60.107 55.000 0.00 0.00 42.53 4.11
2395 2527 0.107165 GCTCCTATGCGGAAAACCCT 60.107 55.000 0.00 0.00 42.53 4.34
2396 2528 1.140252 GCTCCTATGCGGAAAACCCTA 59.860 52.381 0.00 0.00 42.53 3.53
2397 2529 2.224548 GCTCCTATGCGGAAAACCCTAT 60.225 50.000 0.00 0.00 42.53 2.57
2398 2530 3.747708 GCTCCTATGCGGAAAACCCTATT 60.748 47.826 0.00 0.00 42.53 1.73
2399 2531 3.815401 CTCCTATGCGGAAAACCCTATTG 59.185 47.826 0.00 0.00 42.53 1.90
2400 2532 3.201266 TCCTATGCGGAAAACCCTATTGT 59.799 43.478 0.00 0.00 39.40 2.71
2401 2533 3.564225 CCTATGCGGAAAACCCTATTGTC 59.436 47.826 0.00 0.00 33.16 3.18
2402 2534 1.444836 TGCGGAAAACCCTATTGTCG 58.555 50.000 0.00 0.00 0.00 4.35
2403 2535 0.098200 GCGGAAAACCCTATTGTCGC 59.902 55.000 0.00 0.00 35.34 5.19
2404 2536 0.372334 CGGAAAACCCTATTGTCGCG 59.628 55.000 0.00 0.00 0.00 5.87
2405 2537 1.445871 GGAAAACCCTATTGTCGCGT 58.554 50.000 5.77 0.00 0.00 6.01
2406 2538 1.808343 GGAAAACCCTATTGTCGCGTT 59.192 47.619 5.77 0.00 0.00 4.84
2407 2539 2.227149 GGAAAACCCTATTGTCGCGTTT 59.773 45.455 5.77 0.00 0.00 3.60
2408 2540 3.304861 GGAAAACCCTATTGTCGCGTTTT 60.305 43.478 5.77 1.59 38.86 2.43
2409 2541 2.981400 AACCCTATTGTCGCGTTTTG 57.019 45.000 5.77 0.00 0.00 2.44
2410 2542 0.519961 ACCCTATTGTCGCGTTTTGC 59.480 50.000 5.77 0.00 41.47 3.68
2420 2552 2.938403 GCGTTTTGCGTCAAACAGT 58.062 47.368 10.84 0.00 43.66 3.55
2421 2553 0.837605 GCGTTTTGCGTCAAACAGTC 59.162 50.000 10.84 0.00 43.66 3.51
2422 2554 1.101454 CGTTTTGCGTCAAACAGTCG 58.899 50.000 10.84 7.62 32.79 4.18
2423 2555 1.462791 GTTTTGCGTCAAACAGTCGG 58.537 50.000 4.80 0.00 32.79 4.79
2424 2556 0.248296 TTTTGCGTCAAACAGTCGGC 60.248 50.000 4.80 0.00 32.79 5.54
2425 2557 2.368131 TTTGCGTCAAACAGTCGGCG 62.368 55.000 0.00 0.00 0.00 6.46
2426 2558 3.033764 GCGTCAAACAGTCGGCGA 61.034 61.111 4.99 4.99 0.00 5.54
2427 2559 2.591311 GCGTCAAACAGTCGGCGAA 61.591 57.895 12.92 0.00 0.00 4.70
2428 2560 1.928653 CGTCAAACAGTCGGCGAAA 59.071 52.632 12.92 0.00 0.00 3.46
2429 2561 0.382636 CGTCAAACAGTCGGCGAAAC 60.383 55.000 12.92 0.00 0.00 2.78
2430 2562 0.382636 GTCAAACAGTCGGCGAAACG 60.383 55.000 12.92 5.44 0.00 3.60
2447 2579 2.190578 GCATAGGCGAGGCAACCT 59.809 61.111 0.00 0.00 40.24 3.50
2448 2580 1.445942 GCATAGGCGAGGCAACCTA 59.554 57.895 0.00 3.13 42.61 3.08
2449 2581 0.880718 GCATAGGCGAGGCAACCTAC 60.881 60.000 0.00 0.00 41.27 3.18
2450 2582 0.753262 CATAGGCGAGGCAACCTACT 59.247 55.000 2.75 0.00 41.27 2.57
2451 2583 0.753262 ATAGGCGAGGCAACCTACTG 59.247 55.000 2.75 0.00 41.27 2.74
2452 2584 0.323999 TAGGCGAGGCAACCTACTGA 60.324 55.000 0.00 0.00 37.50 3.41
2453 2585 1.448013 GGCGAGGCAACCTACTGAC 60.448 63.158 0.00 0.00 31.76 3.51
2454 2586 1.592223 GCGAGGCAACCTACTGACT 59.408 57.895 0.00 0.00 37.39 3.41
2455 2587 0.815734 GCGAGGCAACCTACTGACTA 59.184 55.000 0.00 0.00 33.64 2.59
2456 2588 1.202313 GCGAGGCAACCTACTGACTAG 60.202 57.143 0.00 0.00 33.64 2.57
2457 2589 2.093106 CGAGGCAACCTACTGACTAGT 58.907 52.381 0.00 0.00 33.64 2.57
2458 2590 3.276857 CGAGGCAACCTACTGACTAGTA 58.723 50.000 0.00 0.00 33.64 1.82
2468 2600 2.736347 ACTGACTAGTAGAATGCCCGT 58.264 47.619 3.59 0.00 34.74 5.28
2469 2601 2.427453 ACTGACTAGTAGAATGCCCGTG 59.573 50.000 3.59 0.00 34.74 4.94
2470 2602 1.136305 TGACTAGTAGAATGCCCGTGC 59.864 52.381 3.59 0.00 38.26 5.34
2471 2603 0.102481 ACTAGTAGAATGCCCGTGCG 59.898 55.000 3.59 0.00 41.78 5.34
2472 2604 0.102481 CTAGTAGAATGCCCGTGCGT 59.898 55.000 0.00 0.00 41.78 5.24
2474 2606 1.019278 AGTAGAATGCCCGTGCGTTG 61.019 55.000 0.86 0.00 46.55 4.10
2475 2607 2.395360 TAGAATGCCCGTGCGTTGC 61.395 57.895 0.86 0.00 46.55 4.17
2476 2608 2.796483 TAGAATGCCCGTGCGTTGCT 62.796 55.000 0.86 2.45 46.55 3.91
2477 2609 2.359354 AATGCCCGTGCGTTGCTA 60.359 55.556 0.00 0.00 44.90 3.49
2478 2610 2.577763 GAATGCCCGTGCGTTGCTAC 62.578 60.000 0.86 0.00 46.55 3.58
2491 2623 3.761657 CGTTGCTACGGACTACAATACA 58.238 45.455 13.04 0.00 43.94 2.29
2492 2624 4.357142 CGTTGCTACGGACTACAATACAT 58.643 43.478 13.04 0.00 43.94 2.29
2493 2625 5.513376 CGTTGCTACGGACTACAATACATA 58.487 41.667 13.04 0.00 43.94 2.29
2494 2626 6.147581 CGTTGCTACGGACTACAATACATAT 58.852 40.000 13.04 0.00 43.94 1.78
2495 2627 7.300320 CGTTGCTACGGACTACAATACATATA 58.700 38.462 13.04 0.00 43.94 0.86
2496 2628 7.269937 CGTTGCTACGGACTACAATACATATAC 59.730 40.741 13.04 0.00 43.94 1.47
2497 2629 7.748691 TGCTACGGACTACAATACATATACA 57.251 36.000 0.00 0.00 0.00 2.29
2498 2630 8.344446 TGCTACGGACTACAATACATATACAT 57.656 34.615 0.00 0.00 0.00 2.29
2499 2631 8.241367 TGCTACGGACTACAATACATATACATG 58.759 37.037 0.00 0.00 38.21 3.21
2500 2632 8.456471 GCTACGGACTACAATACATATACATGA 58.544 37.037 0.00 0.00 35.96 3.07
2503 2635 9.856488 ACGGACTACAATACATATACATGAATC 57.144 33.333 0.00 0.00 35.96 2.52
2504 2636 9.855021 CGGACTACAATACATATACATGAATCA 57.145 33.333 0.00 0.00 35.96 2.57
2523 2655 6.611380 AATCAAACAAATGATTAACGTCGC 57.389 33.333 0.91 0.00 45.70 5.19
2524 2656 4.468643 TCAAACAAATGATTAACGTCGCC 58.531 39.130 0.00 0.00 0.00 5.54
2525 2657 4.214545 TCAAACAAATGATTAACGTCGCCT 59.785 37.500 0.00 0.00 0.00 5.52
2526 2658 4.336532 AACAAATGATTAACGTCGCCTC 57.663 40.909 0.00 0.00 0.00 4.70
2527 2659 3.596214 ACAAATGATTAACGTCGCCTCT 58.404 40.909 0.00 0.00 0.00 3.69
2528 2660 4.751060 ACAAATGATTAACGTCGCCTCTA 58.249 39.130 0.00 0.00 0.00 2.43
2529 2661 5.172934 ACAAATGATTAACGTCGCCTCTAA 58.827 37.500 0.00 0.00 0.00 2.10
2530 2662 5.291128 ACAAATGATTAACGTCGCCTCTAAG 59.709 40.000 0.00 0.00 0.00 2.18
2531 2663 3.431922 TGATTAACGTCGCCTCTAAGG 57.568 47.619 0.00 0.00 38.80 2.69
2532 2664 2.756760 TGATTAACGTCGCCTCTAAGGT 59.243 45.455 0.00 0.00 37.80 3.50
2533 2665 2.927553 TTAACGTCGCCTCTAAGGTC 57.072 50.000 0.00 0.00 37.80 3.85
2534 2666 0.729116 TAACGTCGCCTCTAAGGTCG 59.271 55.000 0.00 0.00 37.80 4.79
2535 2667 0.957395 AACGTCGCCTCTAAGGTCGA 60.957 55.000 7.95 7.95 40.00 4.20
2537 2669 4.728409 TCGCCTCTAAGGTCGACA 57.272 55.556 18.91 0.00 38.38 4.35
2538 2670 2.177950 TCGCCTCTAAGGTCGACAC 58.822 57.895 18.91 6.91 38.38 3.67
2539 2671 0.322277 TCGCCTCTAAGGTCGACACT 60.322 55.000 18.91 9.30 38.38 3.55
2540 2672 0.099082 CGCCTCTAAGGTCGACACTC 59.901 60.000 18.91 0.00 37.80 3.51
2541 2673 1.174783 GCCTCTAAGGTCGACACTCA 58.825 55.000 18.91 0.00 37.80 3.41
2542 2674 1.751924 GCCTCTAAGGTCGACACTCAT 59.248 52.381 18.91 0.51 37.80 2.90
2543 2675 2.166664 GCCTCTAAGGTCGACACTCATT 59.833 50.000 18.91 6.20 37.80 2.57
2544 2676 3.368531 GCCTCTAAGGTCGACACTCATTT 60.369 47.826 18.91 4.18 37.80 2.32
2545 2677 4.425520 CCTCTAAGGTCGACACTCATTTC 58.574 47.826 18.91 0.00 0.00 2.17
2546 2678 4.158764 CCTCTAAGGTCGACACTCATTTCT 59.841 45.833 18.91 0.00 0.00 2.52
2547 2679 5.312120 TCTAAGGTCGACACTCATTTCTC 57.688 43.478 18.91 0.00 0.00 2.87
2548 2680 3.320673 AAGGTCGACACTCATTTCTCC 57.679 47.619 18.91 0.00 0.00 3.71
2549 2681 1.550976 AGGTCGACACTCATTTCTCCC 59.449 52.381 18.91 0.00 0.00 4.30
2550 2682 1.550976 GGTCGACACTCATTTCTCCCT 59.449 52.381 18.91 0.00 0.00 4.20
2551 2683 2.417515 GGTCGACACTCATTTCTCCCTC 60.418 54.545 18.91 0.00 0.00 4.30
2552 2684 1.472878 TCGACACTCATTTCTCCCTCG 59.527 52.381 0.00 0.00 0.00 4.63
2553 2685 1.202582 CGACACTCATTTCTCCCTCGT 59.797 52.381 0.00 0.00 0.00 4.18
2554 2686 2.422479 CGACACTCATTTCTCCCTCGTA 59.578 50.000 0.00 0.00 0.00 3.43
2555 2687 3.731264 CGACACTCATTTCTCCCTCGTAC 60.731 52.174 0.00 0.00 0.00 3.67
2556 2688 2.163815 ACACTCATTTCTCCCTCGTACG 59.836 50.000 9.53 9.53 0.00 3.67
2557 2689 2.163815 CACTCATTTCTCCCTCGTACGT 59.836 50.000 16.05 0.00 0.00 3.57
2558 2690 2.422832 ACTCATTTCTCCCTCGTACGTC 59.577 50.000 16.05 0.00 0.00 4.34
2559 2691 2.683867 CTCATTTCTCCCTCGTACGTCT 59.316 50.000 16.05 0.00 0.00 4.18
2560 2692 2.422479 TCATTTCTCCCTCGTACGTCTG 59.578 50.000 16.05 6.91 0.00 3.51
2561 2693 1.171308 TTTCTCCCTCGTACGTCTGG 58.829 55.000 16.05 15.05 0.00 3.86
2562 2694 0.679002 TTCTCCCTCGTACGTCTGGG 60.679 60.000 26.03 26.03 40.95 4.45
2563 2695 2.753043 TCCCTCGTACGTCTGGGC 60.753 66.667 26.68 0.00 39.49 5.36
2564 2696 4.189188 CCCTCGTACGTCTGGGCG 62.189 72.222 22.81 8.05 32.49 6.13
2566 2698 2.108514 CCTCGTACGTCTGGGCGTA 61.109 63.158 16.05 3.25 45.06 4.42
2567 2699 1.442526 CCTCGTACGTCTGGGCGTAT 61.443 60.000 16.05 0.00 46.81 3.06
2568 2700 0.379669 CTCGTACGTCTGGGCGTATT 59.620 55.000 16.05 0.00 46.81 1.89
2569 2701 0.378257 TCGTACGTCTGGGCGTATTC 59.622 55.000 16.05 0.00 46.81 1.75
2570 2702 0.099259 CGTACGTCTGGGCGTATTCA 59.901 55.000 7.22 0.00 46.81 2.57
2571 2703 1.836383 GTACGTCTGGGCGTATTCAG 58.164 55.000 10.54 0.00 46.81 3.02
2572 2704 0.742505 TACGTCTGGGCGTATTCAGG 59.257 55.000 3.25 0.00 45.06 3.86
2573 2705 1.883084 CGTCTGGGCGTATTCAGGC 60.883 63.158 0.00 0.00 32.75 4.85
2574 2706 1.220749 GTCTGGGCGTATTCAGGCA 59.779 57.895 0.00 0.00 37.28 4.75
2575 2707 0.179045 GTCTGGGCGTATTCAGGCAT 60.179 55.000 0.00 0.00 37.28 4.40
2576 2708 0.106708 TCTGGGCGTATTCAGGCATC 59.893 55.000 0.00 0.00 37.28 3.91
2577 2709 0.179048 CTGGGCGTATTCAGGCATCA 60.179 55.000 0.00 0.00 37.28 3.07
2578 2710 0.254462 TGGGCGTATTCAGGCATCAA 59.746 50.000 0.00 0.00 37.28 2.57
2579 2711 1.340502 TGGGCGTATTCAGGCATCAAA 60.341 47.619 0.00 0.00 37.28 2.69
2580 2712 1.956477 GGGCGTATTCAGGCATCAAAT 59.044 47.619 0.00 0.00 37.28 2.32
2581 2713 2.287788 GGGCGTATTCAGGCATCAAATG 60.288 50.000 0.00 0.00 37.28 2.32
2582 2714 2.287788 GGCGTATTCAGGCATCAAATGG 60.288 50.000 0.00 0.00 37.28 3.16
2583 2715 2.287788 GCGTATTCAGGCATCAAATGGG 60.288 50.000 0.00 0.00 35.60 4.00
2584 2716 2.287788 CGTATTCAGGCATCAAATGGGC 60.288 50.000 0.00 0.00 0.00 5.36
2585 2717 0.748450 ATTCAGGCATCAAATGGGCG 59.252 50.000 0.00 0.00 34.32 6.13
2586 2718 1.947597 TTCAGGCATCAAATGGGCGC 61.948 55.000 0.00 0.00 34.32 6.53
2587 2719 3.149648 AGGCATCAAATGGGCGCC 61.150 61.111 21.18 21.18 43.31 6.53
2588 2720 4.225703 GGCATCAAATGGGCGCCC 62.226 66.667 39.40 39.40 36.73 6.13
2597 2729 4.445710 TGGGCGCCCATCATGCTT 62.446 61.111 44.23 0.00 41.89 3.91
2598 2730 3.149648 GGGCGCCCATCATGCTTT 61.150 61.111 40.73 0.00 35.81 3.51
2599 2731 2.724273 GGGCGCCCATCATGCTTTT 61.724 57.895 40.73 0.00 35.81 2.27
2600 2732 1.519898 GGCGCCCATCATGCTTTTG 60.520 57.895 18.11 0.00 0.00 2.44
2601 2733 1.512230 GCGCCCATCATGCTTTTGA 59.488 52.632 0.00 0.00 0.00 2.69
2602 2734 0.108709 GCGCCCATCATGCTTTTGAA 60.109 50.000 0.00 0.00 0.00 2.69
2603 2735 1.672441 GCGCCCATCATGCTTTTGAAA 60.672 47.619 0.00 0.00 0.00 2.69
2604 2736 2.686235 CGCCCATCATGCTTTTGAAAA 58.314 42.857 0.00 0.00 0.00 2.29
2605 2737 3.264104 CGCCCATCATGCTTTTGAAAAT 58.736 40.909 0.00 0.00 0.00 1.82
2606 2738 3.307782 CGCCCATCATGCTTTTGAAAATC 59.692 43.478 0.00 0.00 0.00 2.17
2607 2739 3.624410 GCCCATCATGCTTTTGAAAATCC 59.376 43.478 0.00 0.00 0.00 3.01
2608 2740 4.834534 CCCATCATGCTTTTGAAAATCCA 58.165 39.130 0.00 0.00 0.00 3.41
2609 2741 5.247084 CCCATCATGCTTTTGAAAATCCAA 58.753 37.500 0.00 0.00 0.00 3.53
2610 2742 5.883673 CCCATCATGCTTTTGAAAATCCAAT 59.116 36.000 0.00 0.00 0.00 3.16
2611 2743 6.037830 CCCATCATGCTTTTGAAAATCCAATC 59.962 38.462 0.00 0.00 0.00 2.67
2612 2744 6.596106 CCATCATGCTTTTGAAAATCCAATCA 59.404 34.615 0.00 0.00 0.00 2.57
2613 2745 7.282224 CCATCATGCTTTTGAAAATCCAATCAT 59.718 33.333 0.00 0.00 0.00 2.45
2614 2746 7.837202 TCATGCTTTTGAAAATCCAATCATC 57.163 32.000 0.00 0.00 0.00 2.92
2615 2747 7.617225 TCATGCTTTTGAAAATCCAATCATCT 58.383 30.769 0.00 0.00 0.00 2.90
2616 2748 7.547722 TCATGCTTTTGAAAATCCAATCATCTG 59.452 33.333 0.00 0.00 0.00 2.90
2617 2749 6.995364 TGCTTTTGAAAATCCAATCATCTGA 58.005 32.000 0.00 0.00 0.00 3.27
2618 2750 7.443477 TGCTTTTGAAAATCCAATCATCTGAA 58.557 30.769 0.00 0.00 0.00 3.02
2619 2751 7.385752 TGCTTTTGAAAATCCAATCATCTGAAC 59.614 33.333 0.00 0.00 0.00 3.18
2620 2752 7.385752 GCTTTTGAAAATCCAATCATCTGAACA 59.614 33.333 0.00 0.00 0.00 3.18
2621 2753 8.821147 TTTTGAAAATCCAATCATCTGAACAG 57.179 30.769 0.00 0.00 0.00 3.16
2622 2754 7.528996 TTGAAAATCCAATCATCTGAACAGT 57.471 32.000 1.73 0.00 0.00 3.55
2623 2755 7.149569 TGAAAATCCAATCATCTGAACAGTC 57.850 36.000 1.73 0.00 0.00 3.51
2624 2756 6.716173 TGAAAATCCAATCATCTGAACAGTCA 59.284 34.615 1.73 0.00 0.00 3.41
2632 2764 3.239861 CTGAACAGTCAGGGCTTCC 57.760 57.895 0.00 0.00 46.55 3.46
2633 2765 0.322008 CTGAACAGTCAGGGCTTCCC 60.322 60.000 0.00 0.00 46.55 3.97
2643 2775 3.621225 GGCTTCCCCAAATCCAGC 58.379 61.111 0.00 0.00 0.00 4.85
2644 2776 1.305213 GGCTTCCCCAAATCCAGCA 60.305 57.895 0.00 0.00 31.71 4.41
2645 2777 1.607801 GGCTTCCCCAAATCCAGCAC 61.608 60.000 0.00 0.00 31.71 4.40
2646 2778 0.899717 GCTTCCCCAAATCCAGCACA 60.900 55.000 0.00 0.00 0.00 4.57
2647 2779 1.856629 CTTCCCCAAATCCAGCACAT 58.143 50.000 0.00 0.00 0.00 3.21
2648 2780 2.949963 GCTTCCCCAAATCCAGCACATA 60.950 50.000 0.00 0.00 0.00 2.29
2649 2781 3.569491 CTTCCCCAAATCCAGCACATAT 58.431 45.455 0.00 0.00 0.00 1.78
2650 2782 2.948115 TCCCCAAATCCAGCACATATG 58.052 47.619 0.00 0.00 0.00 1.78
2651 2783 2.244510 TCCCCAAATCCAGCACATATGT 59.755 45.455 1.41 1.41 0.00 2.29
2666 2798 5.441718 ACATATGTGAGGAGAAATGTGGT 57.558 39.130 7.78 0.00 0.00 4.16
2667 2799 5.819991 ACATATGTGAGGAGAAATGTGGTT 58.180 37.500 7.78 0.00 0.00 3.67
2668 2800 6.957631 ACATATGTGAGGAGAAATGTGGTTA 58.042 36.000 7.78 0.00 0.00 2.85
2669 2801 7.577303 ACATATGTGAGGAGAAATGTGGTTAT 58.423 34.615 7.78 0.00 0.00 1.89
2670 2802 7.716998 ACATATGTGAGGAGAAATGTGGTTATC 59.283 37.037 7.78 0.00 0.00 1.75
2671 2803 5.762179 TGTGAGGAGAAATGTGGTTATCT 57.238 39.130 0.00 0.00 0.00 1.98
2672 2804 5.491070 TGTGAGGAGAAATGTGGTTATCTG 58.509 41.667 0.00 0.00 0.00 2.90
2673 2805 4.878397 GTGAGGAGAAATGTGGTTATCTGG 59.122 45.833 0.00 0.00 0.00 3.86
2674 2806 4.782691 TGAGGAGAAATGTGGTTATCTGGA 59.217 41.667 0.00 0.00 0.00 3.86
2675 2807 5.104259 AGGAGAAATGTGGTTATCTGGAC 57.896 43.478 0.00 0.00 0.00 4.02
2676 2808 4.785376 AGGAGAAATGTGGTTATCTGGACT 59.215 41.667 0.00 0.00 0.00 3.85
2677 2809 5.964477 AGGAGAAATGTGGTTATCTGGACTA 59.036 40.000 0.00 0.00 0.00 2.59
2678 2810 6.617371 AGGAGAAATGTGGTTATCTGGACTAT 59.383 38.462 0.00 0.00 0.00 2.12
2679 2811 6.931840 GGAGAAATGTGGTTATCTGGACTATC 59.068 42.308 0.00 0.00 0.00 2.08
2680 2812 6.831976 AGAAATGTGGTTATCTGGACTATCC 58.168 40.000 0.00 0.00 36.96 2.59
2681 2813 6.386927 AGAAATGTGGTTATCTGGACTATCCA 59.613 38.462 0.00 0.00 45.98 3.41
2692 2824 4.908601 TGGACTATCCAACATGTTGTCT 57.091 40.909 31.20 21.66 45.00 3.41
2693 2825 4.832248 TGGACTATCCAACATGTTGTCTC 58.168 43.478 31.20 18.70 45.00 3.36
2694 2826 4.192317 GGACTATCCAACATGTTGTCTCC 58.808 47.826 31.20 22.42 38.85 3.71
2695 2827 4.323485 GGACTATCCAACATGTTGTCTCCA 60.323 45.833 31.20 13.82 38.85 3.86
2696 2828 5.241403 ACTATCCAACATGTTGTCTCCAA 57.759 39.130 31.20 13.50 38.85 3.53
2697 2829 5.819991 ACTATCCAACATGTTGTCTCCAAT 58.180 37.500 31.20 18.18 38.85 3.16
2698 2830 6.957631 ACTATCCAACATGTTGTCTCCAATA 58.042 36.000 31.20 18.29 38.85 1.90
2699 2831 6.823689 ACTATCCAACATGTTGTCTCCAATAC 59.176 38.462 31.20 0.00 38.85 1.89
2700 2832 4.979335 TCCAACATGTTGTCTCCAATACA 58.021 39.130 31.20 4.86 38.85 2.29
2701 2833 4.759693 TCCAACATGTTGTCTCCAATACAC 59.240 41.667 31.20 0.00 38.85 2.90
2702 2834 4.378356 CCAACATGTTGTCTCCAATACACG 60.378 45.833 31.20 11.85 38.85 4.49
2703 2835 3.334691 ACATGTTGTCTCCAATACACGG 58.665 45.455 0.00 0.00 32.11 4.94
2704 2836 1.803334 TGTTGTCTCCAATACACGGC 58.197 50.000 0.00 0.00 32.11 5.68
2705 2837 1.084289 GTTGTCTCCAATACACGGCC 58.916 55.000 0.00 0.00 32.11 6.13
2706 2838 0.035820 TTGTCTCCAATACACGGCCC 60.036 55.000 0.00 0.00 0.00 5.80
2707 2839 1.153229 GTCTCCAATACACGGCCCC 60.153 63.158 0.00 0.00 0.00 5.80
2708 2840 1.613928 TCTCCAATACACGGCCCCA 60.614 57.895 0.00 0.00 0.00 4.96
2709 2841 0.986019 TCTCCAATACACGGCCCCAT 60.986 55.000 0.00 0.00 0.00 4.00
2710 2842 0.535102 CTCCAATACACGGCCCCATC 60.535 60.000 0.00 0.00 0.00 3.51
2711 2843 1.528309 CCAATACACGGCCCCATCC 60.528 63.158 0.00 0.00 0.00 3.51
2712 2844 1.528309 CAATACACGGCCCCATCCC 60.528 63.158 0.00 0.00 0.00 3.85
2713 2845 2.763645 AATACACGGCCCCATCCCC 61.764 63.158 0.00 0.00 0.00 4.81
2714 2846 4.743125 TACACGGCCCCATCCCCA 62.743 66.667 0.00 0.00 0.00 4.96
2719 2851 4.586235 GGCCCCATCCCCACGATG 62.586 72.222 0.00 0.00 46.95 3.84
2721 2853 3.807839 CCCCATCCCCACGATGCA 61.808 66.667 0.00 0.00 46.17 3.96
2722 2854 2.516930 CCCATCCCCACGATGCAC 60.517 66.667 0.00 0.00 46.17 4.57
2723 2855 2.516930 CCATCCCCACGATGCACC 60.517 66.667 0.00 0.00 46.17 5.01
2724 2856 2.516930 CATCCCCACGATGCACCC 60.517 66.667 0.00 0.00 41.99 4.61
2725 2857 2.692368 ATCCCCACGATGCACCCT 60.692 61.111 0.00 0.00 0.00 4.34
2726 2858 2.308722 ATCCCCACGATGCACCCTT 61.309 57.895 0.00 0.00 0.00 3.95
2727 2859 2.270874 ATCCCCACGATGCACCCTTC 62.271 60.000 0.00 0.00 0.00 3.46
2728 2860 2.438434 CCCACGATGCACCCTTCC 60.438 66.667 0.00 0.00 0.00 3.46
2729 2861 2.671070 CCACGATGCACCCTTCCT 59.329 61.111 0.00 0.00 0.00 3.36
2730 2862 1.622607 CCCACGATGCACCCTTCCTA 61.623 60.000 0.00 0.00 0.00 2.94
2731 2863 0.469917 CCACGATGCACCCTTCCTAT 59.530 55.000 0.00 0.00 0.00 2.57
2732 2864 1.134098 CCACGATGCACCCTTCCTATT 60.134 52.381 0.00 0.00 0.00 1.73
2733 2865 2.643551 CACGATGCACCCTTCCTATTT 58.356 47.619 0.00 0.00 0.00 1.40
2734 2866 3.016736 CACGATGCACCCTTCCTATTTT 58.983 45.455 0.00 0.00 0.00 1.82
2735 2867 3.016736 ACGATGCACCCTTCCTATTTTG 58.983 45.455 0.00 0.00 0.00 2.44
2736 2868 3.016736 CGATGCACCCTTCCTATTTTGT 58.983 45.455 0.00 0.00 0.00 2.83
2737 2869 3.065371 CGATGCACCCTTCCTATTTTGTC 59.935 47.826 0.00 0.00 0.00 3.18
2738 2870 2.802719 TGCACCCTTCCTATTTTGTCC 58.197 47.619 0.00 0.00 0.00 4.02
2739 2871 2.378547 TGCACCCTTCCTATTTTGTCCT 59.621 45.455 0.00 0.00 0.00 3.85
2740 2872 3.017442 GCACCCTTCCTATTTTGTCCTC 58.983 50.000 0.00 0.00 0.00 3.71
2741 2873 3.308473 GCACCCTTCCTATTTTGTCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
2742 2874 4.080526 GCACCCTTCCTATTTTGTCCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
2743 2875 5.398012 GCACCCTTCCTATTTTGTCCTCTAT 60.398 44.000 0.00 0.00 0.00 1.98
2744 2876 6.663734 CACCCTTCCTATTTTGTCCTCTATT 58.336 40.000 0.00 0.00 0.00 1.73
2745 2877 7.119387 CACCCTTCCTATTTTGTCCTCTATTT 58.881 38.462 0.00 0.00 0.00 1.40
2746 2878 7.615757 CACCCTTCCTATTTTGTCCTCTATTTT 59.384 37.037 0.00 0.00 0.00 1.82
2747 2879 8.842764 ACCCTTCCTATTTTGTCCTCTATTTTA 58.157 33.333 0.00 0.00 0.00 1.52
2748 2880 9.695155 CCCTTCCTATTTTGTCCTCTATTTTAA 57.305 33.333 0.00 0.00 0.00 1.52
2752 2884 9.169592 TCCTATTTTGTCCTCTATTTTAAACCG 57.830 33.333 0.00 0.00 0.00 4.44
2753 2885 8.403236 CCTATTTTGTCCTCTATTTTAAACCGG 58.597 37.037 0.00 0.00 0.00 5.28
2754 2886 9.169592 CTATTTTGTCCTCTATTTTAAACCGGA 57.830 33.333 9.46 0.00 0.00 5.14
2755 2887 8.589701 ATTTTGTCCTCTATTTTAAACCGGAT 57.410 30.769 9.46 0.00 0.00 4.18
2756 2888 6.995511 TTGTCCTCTATTTTAAACCGGATG 57.004 37.500 9.46 0.00 0.00 3.51
2757 2889 6.302535 TGTCCTCTATTTTAAACCGGATGA 57.697 37.500 9.46 0.00 0.00 2.92
2758 2890 6.110707 TGTCCTCTATTTTAAACCGGATGAC 58.889 40.000 9.46 0.00 0.00 3.06
2759 2891 5.233689 GTCCTCTATTTTAAACCGGATGACG 59.766 44.000 9.46 0.00 43.80 4.35
2760 2892 4.025145 CCTCTATTTTAAACCGGATGACGC 60.025 45.833 9.46 0.00 42.52 5.19
2761 2893 3.872771 TCTATTTTAAACCGGATGACGCC 59.127 43.478 9.46 0.00 42.52 5.68
2762 2894 1.166989 TTTTAAACCGGATGACGCCC 58.833 50.000 9.46 0.00 42.52 6.13
2763 2895 0.036448 TTTAAACCGGATGACGCCCA 59.964 50.000 9.46 0.00 42.52 5.36
2764 2896 0.674269 TTAAACCGGATGACGCCCAC 60.674 55.000 9.46 0.00 42.52 4.61
2765 2897 1.546589 TAAACCGGATGACGCCCACT 61.547 55.000 9.46 0.00 42.52 4.00
2766 2898 2.406002 AAACCGGATGACGCCCACTT 62.406 55.000 9.46 0.00 42.52 3.16
2767 2899 2.511600 CCGGATGACGCCCACTTC 60.512 66.667 0.00 0.00 42.52 3.01
2768 2900 2.579201 CGGATGACGCCCACTTCT 59.421 61.111 0.00 0.00 34.82 2.85
2769 2901 1.519455 CGGATGACGCCCACTTCTC 60.519 63.158 0.00 0.00 34.82 2.87
2770 2902 1.153349 GGATGACGCCCACTTCTCC 60.153 63.158 0.00 0.00 0.00 3.71
2771 2903 1.617947 GGATGACGCCCACTTCTCCT 61.618 60.000 0.00 0.00 0.00 3.69
2772 2904 0.250513 GATGACGCCCACTTCTCCTT 59.749 55.000 0.00 0.00 0.00 3.36
2773 2905 0.250513 ATGACGCCCACTTCTCCTTC 59.749 55.000 0.00 0.00 0.00 3.46
2774 2906 1.446272 GACGCCCACTTCTCCTTCG 60.446 63.158 0.00 0.00 0.00 3.79
2775 2907 2.156051 GACGCCCACTTCTCCTTCGT 62.156 60.000 0.00 0.00 0.00 3.85
2776 2908 1.446272 CGCCCACTTCTCCTTCGTC 60.446 63.158 0.00 0.00 0.00 4.20
2777 2909 1.671742 GCCCACTTCTCCTTCGTCA 59.328 57.895 0.00 0.00 0.00 4.35
2778 2910 0.250513 GCCCACTTCTCCTTCGTCAT 59.749 55.000 0.00 0.00 0.00 3.06
2779 2911 1.740718 GCCCACTTCTCCTTCGTCATC 60.741 57.143 0.00 0.00 0.00 2.92
2780 2912 1.827969 CCCACTTCTCCTTCGTCATCT 59.172 52.381 0.00 0.00 0.00 2.90
2781 2913 2.159170 CCCACTTCTCCTTCGTCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
2782 2914 2.478709 CCACTTCTCCTTCGTCATCTCG 60.479 54.545 0.00 0.00 0.00 4.04
2783 2915 1.133407 ACTTCTCCTTCGTCATCTCGC 59.867 52.381 0.00 0.00 0.00 5.03
2784 2916 0.456221 TTCTCCTTCGTCATCTCGCC 59.544 55.000 0.00 0.00 0.00 5.54
2785 2917 1.066587 CTCCTTCGTCATCTCGCCC 59.933 63.158 0.00 0.00 0.00 6.13
2786 2918 1.379977 TCCTTCGTCATCTCGCCCT 60.380 57.895 0.00 0.00 0.00 5.19
2787 2919 1.066587 CCTTCGTCATCTCGCCCTC 59.933 63.158 0.00 0.00 0.00 4.30
2788 2920 1.388065 CCTTCGTCATCTCGCCCTCT 61.388 60.000 0.00 0.00 0.00 3.69
2789 2921 0.030101 CTTCGTCATCTCGCCCTCTC 59.970 60.000 0.00 0.00 0.00 3.20
2790 2922 0.394488 TTCGTCATCTCGCCCTCTCT 60.394 55.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.859304 ATGTGTGACTCAAGTTACCGTA 57.141 40.909 3.00 0.00 34.10 4.02
60 61 4.928601 TGTATAGTTGCATGTACGTCTCC 58.071 43.478 0.00 0.00 0.00 3.71
68 69 3.295585 TGCCCATGTATAGTTGCATGT 57.704 42.857 0.00 0.00 42.47 3.21
95 96 3.953612 TGATGGTAACCCAAAGATGATGC 59.046 43.478 0.00 0.00 46.04 3.91
200 201 0.604073 TCCACCTCGTCAACGCAATA 59.396 50.000 0.00 0.00 39.60 1.90
216 223 0.035820 GCCCGGCCGAATATTATCCA 60.036 55.000 30.73 0.00 0.00 3.41
359 382 1.003580 TCCCTGAGTTTGACTGCATCC 59.996 52.381 0.00 0.00 0.00 3.51
373 396 2.568546 TTGCCCTCTCTATTCCCTGA 57.431 50.000 0.00 0.00 0.00 3.86
374 397 2.158696 CCTTTGCCCTCTCTATTCCCTG 60.159 54.545 0.00 0.00 0.00 4.45
435 458 3.243359 TGTCCAAGGAGGCAAAAAGAT 57.757 42.857 0.00 0.00 37.29 2.40
500 523 5.499004 TTGCTTCTAACTTACTCCATGGT 57.501 39.130 12.58 0.00 0.00 3.55
537 560 5.050227 CGTGTCACTGTAGTATCTAGCTACC 60.050 48.000 0.65 0.00 38.34 3.18
731 759 3.452627 GAGAGTGGATAGTGGGTGATGTT 59.547 47.826 0.00 0.00 0.00 2.71
768 796 2.954753 GCACGCGGAGTCAAAGGTG 61.955 63.158 12.47 0.00 0.00 4.00
791 819 2.047179 GGACAGCCGGAAGTGACC 60.047 66.667 5.05 5.04 0.00 4.02
821 863 6.490566 CTCACATGTTTGAGTGAATGATGA 57.509 37.500 0.00 0.00 43.48 2.92
982 1028 1.672356 GAACTGATGCGCCTGGTGT 60.672 57.895 4.18 0.00 0.00 4.16
988 1034 1.965930 TGTGTGGAACTGATGCGCC 60.966 57.895 4.18 0.00 38.04 6.53
1000 1046 0.865111 CGGTGTATGTGTGTGTGTGG 59.135 55.000 0.00 0.00 0.00 4.17
1001 1047 0.234625 GCGGTGTATGTGTGTGTGTG 59.765 55.000 0.00 0.00 0.00 3.82
1042 1089 1.271762 TGCTCTCCATCAAAGCTTGCT 60.272 47.619 0.00 0.00 36.96 3.91
1045 1092 1.632409 TCCTGCTCTCCATCAAAGCTT 59.368 47.619 0.00 0.00 36.96 3.74
1094 1141 3.665675 CTGCCGGTGGTGGTCTAGC 62.666 68.421 1.90 0.00 0.00 3.42
1185 1235 2.575262 GTACGAAGACGACGGCGG 60.575 66.667 18.49 0.00 43.17 6.13
1334 1384 2.359602 CTGTGGACAGCAGCAGGG 60.360 66.667 0.00 0.00 37.15 4.45
1433 1483 2.829120 GGTGGAGAAGAAGCTGTAGACT 59.171 50.000 0.00 0.00 0.00 3.24
1669 1728 1.055849 TTCTCTAGGCAGCCAACACA 58.944 50.000 15.80 0.00 0.00 3.72
1670 1729 1.443802 GTTCTCTAGGCAGCCAACAC 58.556 55.000 15.80 0.00 0.00 3.32
1708 1767 9.557061 TCGACATACTACATAGTTAGAACATCT 57.443 33.333 0.00 0.00 37.73 2.90
1713 1772 9.459640 GCAAATCGACATACTACATAGTTAGAA 57.540 33.333 0.00 0.00 37.73 2.10
1739 1801 5.184864 TGCTTGAACAAATAATACACCCCTG 59.815 40.000 0.00 0.00 0.00 4.45
1743 1805 5.567534 CACGTGCTTGAACAAATAATACACC 59.432 40.000 0.82 0.00 0.00 4.16
1776 1838 9.243105 ACCAATCAAGCTAATACAAGTTACAAT 57.757 29.630 0.00 0.00 0.00 2.71
1779 1842 7.399523 CGACCAATCAAGCTAATACAAGTTAC 58.600 38.462 0.00 0.00 0.00 2.50
1787 1850 4.095782 GCAAACCGACCAATCAAGCTAATA 59.904 41.667 0.00 0.00 0.00 0.98
1788 1851 3.119495 GCAAACCGACCAATCAAGCTAAT 60.119 43.478 0.00 0.00 0.00 1.73
1789 1852 2.227865 GCAAACCGACCAATCAAGCTAA 59.772 45.455 0.00 0.00 0.00 3.09
1803 1866 5.118510 GGATGTAAGTTTTCATTGCAAACCG 59.881 40.000 1.71 0.00 35.10 4.44
1870 1958 2.679996 GATTTTGCACCGGGCCCT 60.680 61.111 22.43 0.00 43.89 5.19
1929 2017 6.016192 TCCCACAATATAAGACGTTTTTGCAA 60.016 34.615 0.00 0.00 0.00 4.08
1930 2018 5.473846 TCCCACAATATAAGACGTTTTTGCA 59.526 36.000 0.00 0.00 0.00 4.08
1931 2019 5.798434 GTCCCACAATATAAGACGTTTTTGC 59.202 40.000 0.00 0.00 0.00 3.68
1933 2021 7.513371 TTGTCCCACAATATAAGACGTTTTT 57.487 32.000 0.00 0.00 32.34 1.94
1935 2023 6.150474 CCTTTGTCCCACAATATAAGACGTTT 59.850 38.462 0.00 0.00 38.00 3.60
1936 2024 5.646360 CCTTTGTCCCACAATATAAGACGTT 59.354 40.000 0.00 0.00 38.00 3.99
1937 2025 5.183228 CCTTTGTCCCACAATATAAGACGT 58.817 41.667 0.00 0.00 38.00 4.34
1939 2027 4.887655 CCCCTTTGTCCCACAATATAAGAC 59.112 45.833 0.00 0.00 38.00 3.01
1940 2028 4.079443 CCCCCTTTGTCCCACAATATAAGA 60.079 45.833 0.00 0.00 38.00 2.10
1942 2030 3.598782 ACCCCCTTTGTCCCACAATATAA 59.401 43.478 0.00 0.00 38.00 0.98
1943 2031 3.203059 ACCCCCTTTGTCCCACAATATA 58.797 45.455 0.00 0.00 38.00 0.86
1944 2032 2.007636 ACCCCCTTTGTCCCACAATAT 58.992 47.619 0.00 0.00 38.00 1.28
1945 2033 1.462426 ACCCCCTTTGTCCCACAATA 58.538 50.000 0.00 0.00 38.00 1.90
1946 2034 1.462426 TACCCCCTTTGTCCCACAAT 58.538 50.000 0.00 0.00 38.00 2.71
1949 2064 3.010920 AGTTAATACCCCCTTTGTCCCAC 59.989 47.826 0.00 0.00 0.00 4.61
1952 2067 5.568023 GCAAAAGTTAATACCCCCTTTGTCC 60.568 44.000 0.00 0.00 0.00 4.02
1956 2071 4.154176 ACGCAAAAGTTAATACCCCCTTT 58.846 39.130 0.00 0.00 0.00 3.11
1957 2072 3.770046 ACGCAAAAGTTAATACCCCCTT 58.230 40.909 0.00 0.00 0.00 3.95
2091 2206 5.654603 TGGTCTCTAATTAGTTTCGAGCA 57.345 39.130 12.19 15.03 0.00 4.26
2157 2289 5.786401 AGTATTCGTCTCATTTTCACTGC 57.214 39.130 0.00 0.00 0.00 4.40
2204 2336 6.070767 TCCCTCTCAGTATTCGTCTCATTTTT 60.071 38.462 0.00 0.00 0.00 1.94
2205 2337 5.422331 TCCCTCTCAGTATTCGTCTCATTTT 59.578 40.000 0.00 0.00 0.00 1.82
2206 2338 4.956700 TCCCTCTCAGTATTCGTCTCATTT 59.043 41.667 0.00 0.00 0.00 2.32
2207 2339 4.537751 TCCCTCTCAGTATTCGTCTCATT 58.462 43.478 0.00 0.00 0.00 2.57
2208 2340 4.141287 CTCCCTCTCAGTATTCGTCTCAT 58.859 47.826 0.00 0.00 0.00 2.90
2209 2341 3.200165 TCTCCCTCTCAGTATTCGTCTCA 59.800 47.826 0.00 0.00 0.00 3.27
2210 2342 3.562557 GTCTCCCTCTCAGTATTCGTCTC 59.437 52.174 0.00 0.00 0.00 3.36
2211 2343 3.547746 GTCTCCCTCTCAGTATTCGTCT 58.452 50.000 0.00 0.00 0.00 4.18
2212 2344 2.288458 CGTCTCCCTCTCAGTATTCGTC 59.712 54.545 0.00 0.00 0.00 4.20
2213 2345 2.290464 CGTCTCCCTCTCAGTATTCGT 58.710 52.381 0.00 0.00 0.00 3.85
2214 2346 2.032302 CACGTCTCCCTCTCAGTATTCG 59.968 54.545 0.00 0.00 0.00 3.34
2215 2347 3.280295 TCACGTCTCCCTCTCAGTATTC 58.720 50.000 0.00 0.00 0.00 1.75
2216 2348 3.283751 CTCACGTCTCCCTCTCAGTATT 58.716 50.000 0.00 0.00 0.00 1.89
2217 2349 2.925724 CTCACGTCTCCCTCTCAGTAT 58.074 52.381 0.00 0.00 0.00 2.12
2218 2350 1.679336 GCTCACGTCTCCCTCTCAGTA 60.679 57.143 0.00 0.00 0.00 2.74
2219 2351 0.963355 GCTCACGTCTCCCTCTCAGT 60.963 60.000 0.00 0.00 0.00 3.41
2220 2352 1.806568 GCTCACGTCTCCCTCTCAG 59.193 63.158 0.00 0.00 0.00 3.35
2221 2353 2.041115 CGCTCACGTCTCCCTCTCA 61.041 63.158 0.00 0.00 33.53 3.27
2228 2360 2.872001 CTCACGCGCTCACGTCTC 60.872 66.667 5.73 0.00 46.34 3.36
2232 2364 3.470567 GAACCTCACGCGCTCACG 61.471 66.667 5.73 0.00 44.07 4.35
2265 2397 0.659957 GCGCCAGATGAAATGGACTC 59.340 55.000 0.00 0.00 40.51 3.36
2266 2398 0.035152 TGCGCCAGATGAAATGGACT 60.035 50.000 4.18 0.00 40.51 3.85
2267 2399 1.027357 ATGCGCCAGATGAAATGGAC 58.973 50.000 4.18 0.00 40.51 4.02
2268 2400 2.636647 TATGCGCCAGATGAAATGGA 57.363 45.000 4.18 0.00 40.51 3.41
2269 2401 2.880268 TCTTATGCGCCAGATGAAATGG 59.120 45.455 4.18 0.00 41.04 3.16
2270 2402 4.556942 TTCTTATGCGCCAGATGAAATG 57.443 40.909 4.18 0.00 0.00 2.32
2271 2403 5.105797 TGTTTTCTTATGCGCCAGATGAAAT 60.106 36.000 4.18 0.00 32.05 2.17
2272 2404 4.217334 TGTTTTCTTATGCGCCAGATGAAA 59.783 37.500 4.18 8.00 30.73 2.69
2273 2405 3.755905 TGTTTTCTTATGCGCCAGATGAA 59.244 39.130 4.18 2.01 0.00 2.57
2274 2406 3.342719 TGTTTTCTTATGCGCCAGATGA 58.657 40.909 4.18 0.00 0.00 2.92
2275 2407 3.763097 TGTTTTCTTATGCGCCAGATG 57.237 42.857 4.18 0.00 0.00 2.90
2276 2408 4.989279 AATGTTTTCTTATGCGCCAGAT 57.011 36.364 4.18 0.00 0.00 2.90
2277 2409 5.182487 TCTAATGTTTTCTTATGCGCCAGA 58.818 37.500 4.18 0.00 0.00 3.86
2278 2410 5.484173 TCTAATGTTTTCTTATGCGCCAG 57.516 39.130 4.18 0.00 0.00 4.85
2279 2411 5.392595 GGTTCTAATGTTTTCTTATGCGCCA 60.393 40.000 4.18 0.00 0.00 5.69
2280 2412 5.034797 GGTTCTAATGTTTTCTTATGCGCC 58.965 41.667 4.18 0.00 0.00 6.53
2281 2413 5.880341 AGGTTCTAATGTTTTCTTATGCGC 58.120 37.500 0.00 0.00 0.00 6.09
2323 2455 3.374764 GGGCCCCAAAATGAAAGACTAT 58.625 45.455 12.23 0.00 0.00 2.12
2326 2458 0.613260 GGGGCCCCAAAATGAAAGAC 59.387 55.000 37.61 2.39 35.81 3.01
2332 2464 3.681313 CGAATTTTAGGGGCCCCAAAATG 60.681 47.826 37.79 29.43 37.14 2.32
2341 2473 1.107538 GGCCTCCGAATTTTAGGGGC 61.108 60.000 0.00 5.80 40.68 5.80
2348 2480 1.678970 GCACAGGGCCTCCGAATTT 60.679 57.895 0.95 0.00 38.33 1.82
2386 2518 1.445871 ACGCGACAATAGGGTTTTCC 58.554 50.000 15.93 0.00 39.75 3.13
2390 2522 1.068816 GCAAAACGCGACAATAGGGTT 60.069 47.619 15.93 0.00 44.80 4.11
2391 2523 0.519961 GCAAAACGCGACAATAGGGT 59.480 50.000 15.93 0.00 36.29 4.34
2392 2524 3.306206 GCAAAACGCGACAATAGGG 57.694 52.632 15.93 0.00 0.00 3.53
2404 2536 1.462791 CCGACTGTTTGACGCAAAAC 58.537 50.000 6.59 6.59 39.90 2.43
2405 2537 0.248296 GCCGACTGTTTGACGCAAAA 60.248 50.000 6.59 0.00 35.03 2.44
2406 2538 1.353804 GCCGACTGTTTGACGCAAA 59.646 52.632 1.63 1.63 32.86 3.68
2407 2539 2.876879 CGCCGACTGTTTGACGCAA 61.877 57.895 0.00 0.00 32.86 4.85
2408 2540 3.334751 CGCCGACTGTTTGACGCA 61.335 61.111 0.00 0.00 32.86 5.24
2409 2541 2.096481 TTTCGCCGACTGTTTGACGC 62.096 55.000 0.00 0.00 32.86 5.19
2410 2542 0.382636 GTTTCGCCGACTGTTTGACG 60.383 55.000 0.00 0.00 0.00 4.35
2411 2543 0.382636 CGTTTCGCCGACTGTTTGAC 60.383 55.000 0.00 0.00 0.00 3.18
2412 2544 1.928653 CGTTTCGCCGACTGTTTGA 59.071 52.632 0.00 0.00 0.00 2.69
2413 2545 4.489683 CGTTTCGCCGACTGTTTG 57.510 55.556 0.00 0.00 0.00 2.93
2430 2562 0.880718 GTAGGTTGCCTCGCCTATGC 60.881 60.000 0.00 0.00 39.30 3.14
2431 2563 0.753262 AGTAGGTTGCCTCGCCTATG 59.247 55.000 0.00 0.00 39.30 2.23
2432 2564 0.753262 CAGTAGGTTGCCTCGCCTAT 59.247 55.000 0.00 0.00 39.30 2.57
2433 2565 0.323999 TCAGTAGGTTGCCTCGCCTA 60.324 55.000 0.00 0.00 36.38 3.93
2434 2566 1.609501 TCAGTAGGTTGCCTCGCCT 60.610 57.895 0.00 0.00 38.81 5.52
2435 2567 1.448013 GTCAGTAGGTTGCCTCGCC 60.448 63.158 0.00 0.00 34.61 5.54
2436 2568 0.815734 TAGTCAGTAGGTTGCCTCGC 59.184 55.000 0.00 0.00 34.61 5.03
2437 2569 2.093106 ACTAGTCAGTAGGTTGCCTCG 58.907 52.381 0.00 0.00 34.61 4.63
2446 2578 7.718645 GCACGGGCATTCTACTAGTCAGTAG 62.719 52.000 3.77 5.62 46.04 2.57
2447 2579 3.630769 CACGGGCATTCTACTAGTCAGTA 59.369 47.826 0.00 0.00 36.14 2.74
2448 2580 2.427453 CACGGGCATTCTACTAGTCAGT 59.573 50.000 0.00 0.00 38.91 3.41
2449 2581 2.799917 GCACGGGCATTCTACTAGTCAG 60.800 54.545 3.77 0.00 40.72 3.51
2450 2582 1.136305 GCACGGGCATTCTACTAGTCA 59.864 52.381 3.77 0.00 40.72 3.41
2451 2583 1.854227 GCACGGGCATTCTACTAGTC 58.146 55.000 3.77 0.00 40.72 2.59
2452 2584 0.102481 CGCACGGGCATTCTACTAGT 59.898 55.000 11.77 0.00 41.24 2.57
2453 2585 0.102481 ACGCACGGGCATTCTACTAG 59.898 55.000 11.77 0.00 41.24 2.57
2454 2586 0.533491 AACGCACGGGCATTCTACTA 59.467 50.000 11.77 0.00 41.24 1.82
2455 2587 1.019278 CAACGCACGGGCATTCTACT 61.019 55.000 11.77 0.00 41.24 2.57
2456 2588 1.423845 CAACGCACGGGCATTCTAC 59.576 57.895 11.77 0.00 41.24 2.59
2457 2589 2.395360 GCAACGCACGGGCATTCTA 61.395 57.895 11.77 0.00 41.24 2.10
2458 2590 2.796483 TAGCAACGCACGGGCATTCT 62.796 55.000 11.77 2.86 41.24 2.40
2459 2591 2.395360 TAGCAACGCACGGGCATTC 61.395 57.895 11.77 0.00 41.24 2.67
2460 2592 2.359354 TAGCAACGCACGGGCATT 60.359 55.556 11.77 0.00 41.24 3.56
2461 2593 3.124921 GTAGCAACGCACGGGCAT 61.125 61.111 11.77 0.00 41.24 4.40
2471 2603 8.077991 TGTATATGTATTGTAGTCCGTAGCAAC 58.922 37.037 0.00 0.00 0.00 4.17
2472 2604 8.168790 TGTATATGTATTGTAGTCCGTAGCAA 57.831 34.615 0.00 0.00 0.00 3.91
2473 2605 7.748691 TGTATATGTATTGTAGTCCGTAGCA 57.251 36.000 0.00 0.00 0.00 3.49
2474 2606 8.456471 TCATGTATATGTATTGTAGTCCGTAGC 58.544 37.037 0.00 0.00 35.73 3.58
2477 2609 9.856488 GATTCATGTATATGTATTGTAGTCCGT 57.144 33.333 0.00 0.00 35.73 4.69
2478 2610 9.855021 TGATTCATGTATATGTATTGTAGTCCG 57.145 33.333 0.00 0.00 35.73 4.79
2495 2627 9.128107 GACGTTAATCATTTGTTTGATTCATGT 57.872 29.630 3.14 4.83 43.50 3.21
2496 2628 8.306226 CGACGTTAATCATTTGTTTGATTCATG 58.694 33.333 3.14 2.00 43.50 3.07
2497 2629 7.008266 GCGACGTTAATCATTTGTTTGATTCAT 59.992 33.333 3.14 0.00 43.50 2.57
2498 2630 6.304445 GCGACGTTAATCATTTGTTTGATTCA 59.696 34.615 3.14 0.00 43.50 2.57
2499 2631 6.237201 GGCGACGTTAATCATTTGTTTGATTC 60.237 38.462 3.14 0.00 43.50 2.52
2500 2632 5.571357 GGCGACGTTAATCATTTGTTTGATT 59.429 36.000 0.00 5.17 45.74 2.57
2501 2633 5.092781 GGCGACGTTAATCATTTGTTTGAT 58.907 37.500 0.00 0.00 37.96 2.57
2502 2634 4.214545 AGGCGACGTTAATCATTTGTTTGA 59.785 37.500 0.00 0.00 0.00 2.69
2503 2635 4.472286 AGGCGACGTTAATCATTTGTTTG 58.528 39.130 0.00 0.00 0.00 2.93
2504 2636 4.454504 AGAGGCGACGTTAATCATTTGTTT 59.545 37.500 0.00 0.00 0.00 2.83
2505 2637 4.000988 AGAGGCGACGTTAATCATTTGTT 58.999 39.130 0.00 0.00 0.00 2.83
2506 2638 3.596214 AGAGGCGACGTTAATCATTTGT 58.404 40.909 0.00 0.00 0.00 2.83
2507 2639 5.276868 CCTTAGAGGCGACGTTAATCATTTG 60.277 44.000 0.00 0.00 0.00 2.32
2508 2640 4.809426 CCTTAGAGGCGACGTTAATCATTT 59.191 41.667 0.00 0.00 0.00 2.32
2509 2641 4.142004 ACCTTAGAGGCGACGTTAATCATT 60.142 41.667 0.00 0.00 39.63 2.57
2510 2642 3.383825 ACCTTAGAGGCGACGTTAATCAT 59.616 43.478 0.00 0.00 39.63 2.45
2511 2643 2.756760 ACCTTAGAGGCGACGTTAATCA 59.243 45.455 0.00 0.00 39.63 2.57
2512 2644 3.370276 GACCTTAGAGGCGACGTTAATC 58.630 50.000 0.00 0.00 39.63 1.75
2513 2645 2.223433 CGACCTTAGAGGCGACGTTAAT 60.223 50.000 0.00 0.00 39.63 1.40
2514 2646 1.131126 CGACCTTAGAGGCGACGTTAA 59.869 52.381 0.00 0.00 39.63 2.01
2515 2647 0.729116 CGACCTTAGAGGCGACGTTA 59.271 55.000 0.00 0.00 39.63 3.18
2516 2648 0.957395 TCGACCTTAGAGGCGACGTT 60.957 55.000 8.65 0.00 39.63 3.99
2517 2649 1.376424 TCGACCTTAGAGGCGACGT 60.376 57.895 8.65 0.00 39.63 4.34
2518 2650 1.062206 GTCGACCTTAGAGGCGACG 59.938 63.158 19.87 12.41 46.37 5.12
2520 2652 0.322277 AGTGTCGACCTTAGAGGCGA 60.322 55.000 14.12 8.65 39.63 5.54
2521 2653 0.099082 GAGTGTCGACCTTAGAGGCG 59.901 60.000 14.12 0.00 39.63 5.52
2522 2654 1.174783 TGAGTGTCGACCTTAGAGGC 58.825 55.000 14.12 0.00 39.63 4.70
2523 2655 4.158764 AGAAATGAGTGTCGACCTTAGAGG 59.841 45.833 14.12 0.00 42.49 3.69
2524 2656 5.317733 AGAAATGAGTGTCGACCTTAGAG 57.682 43.478 14.12 0.00 0.00 2.43
2525 2657 4.158025 GGAGAAATGAGTGTCGACCTTAGA 59.842 45.833 14.12 0.00 0.00 2.10
2526 2658 4.425520 GGAGAAATGAGTGTCGACCTTAG 58.574 47.826 14.12 0.00 0.00 2.18
2527 2659 3.194968 GGGAGAAATGAGTGTCGACCTTA 59.805 47.826 14.12 7.02 0.00 2.69
2528 2660 2.028020 GGGAGAAATGAGTGTCGACCTT 60.028 50.000 14.12 0.03 0.00 3.50
2529 2661 1.550976 GGGAGAAATGAGTGTCGACCT 59.449 52.381 14.12 9.72 0.00 3.85
2530 2662 1.550976 AGGGAGAAATGAGTGTCGACC 59.449 52.381 14.12 4.42 0.00 4.79
2531 2663 2.732597 CGAGGGAGAAATGAGTGTCGAC 60.733 54.545 9.11 9.11 0.00 4.20
2532 2664 1.472878 CGAGGGAGAAATGAGTGTCGA 59.527 52.381 0.00 0.00 0.00 4.20
2533 2665 1.202582 ACGAGGGAGAAATGAGTGTCG 59.797 52.381 0.00 0.00 0.00 4.35
2534 2666 3.731264 CGTACGAGGGAGAAATGAGTGTC 60.731 52.174 10.44 0.00 0.00 3.67
2535 2667 2.163815 CGTACGAGGGAGAAATGAGTGT 59.836 50.000 10.44 0.00 0.00 3.55
2536 2668 2.163815 ACGTACGAGGGAGAAATGAGTG 59.836 50.000 24.41 0.00 0.00 3.51
2537 2669 2.422832 GACGTACGAGGGAGAAATGAGT 59.577 50.000 24.41 0.00 0.00 3.41
2538 2670 2.683867 AGACGTACGAGGGAGAAATGAG 59.316 50.000 24.41 0.00 0.00 2.90
2539 2671 2.422479 CAGACGTACGAGGGAGAAATGA 59.578 50.000 24.41 0.00 0.00 2.57
2540 2672 2.479730 CCAGACGTACGAGGGAGAAATG 60.480 54.545 24.41 6.37 0.00 2.32
2541 2673 1.749634 CCAGACGTACGAGGGAGAAAT 59.250 52.381 24.41 0.00 0.00 2.17
2542 2674 1.171308 CCAGACGTACGAGGGAGAAA 58.829 55.000 24.41 0.00 0.00 2.52
2543 2675 0.679002 CCCAGACGTACGAGGGAGAA 60.679 60.000 28.66 0.00 39.80 2.87
2544 2676 1.077930 CCCAGACGTACGAGGGAGA 60.078 63.158 28.66 0.00 39.80 3.71
2545 2677 2.772691 GCCCAGACGTACGAGGGAG 61.773 68.421 33.28 20.31 39.80 4.30
2546 2678 2.753043 GCCCAGACGTACGAGGGA 60.753 66.667 33.28 0.00 39.80 4.20
2547 2679 4.189188 CGCCCAGACGTACGAGGG 62.189 72.222 28.40 28.40 40.17 4.30
2548 2680 2.108514 TACGCCCAGACGTACGAGG 61.109 63.158 24.41 19.08 46.19 4.63
2549 2681 3.489731 TACGCCCAGACGTACGAG 58.510 61.111 24.41 11.01 46.19 4.18
2555 2687 1.883084 GCCTGAATACGCCCAGACG 60.883 63.158 0.00 0.00 39.50 4.18
2556 2688 0.179045 ATGCCTGAATACGCCCAGAC 60.179 55.000 0.00 0.00 32.37 3.51
2557 2689 0.106708 GATGCCTGAATACGCCCAGA 59.893 55.000 0.00 0.00 32.37 3.86
2558 2690 0.179048 TGATGCCTGAATACGCCCAG 60.179 55.000 0.00 0.00 0.00 4.45
2559 2691 0.254462 TTGATGCCTGAATACGCCCA 59.746 50.000 0.00 0.00 0.00 5.36
2560 2692 1.388547 TTTGATGCCTGAATACGCCC 58.611 50.000 0.00 0.00 0.00 6.13
2561 2693 2.287788 CCATTTGATGCCTGAATACGCC 60.288 50.000 0.00 0.00 0.00 5.68
2562 2694 2.287788 CCCATTTGATGCCTGAATACGC 60.288 50.000 0.00 0.00 0.00 4.42
2563 2695 2.287788 GCCCATTTGATGCCTGAATACG 60.288 50.000 0.00 0.00 0.00 3.06
2564 2696 2.287788 CGCCCATTTGATGCCTGAATAC 60.288 50.000 0.00 0.00 0.00 1.89
2565 2697 1.955778 CGCCCATTTGATGCCTGAATA 59.044 47.619 0.00 0.00 0.00 1.75
2566 2698 0.748450 CGCCCATTTGATGCCTGAAT 59.252 50.000 0.00 0.00 0.00 2.57
2567 2699 1.947597 GCGCCCATTTGATGCCTGAA 61.948 55.000 0.00 0.00 0.00 3.02
2568 2700 2.417257 GCGCCCATTTGATGCCTGA 61.417 57.895 0.00 0.00 0.00 3.86
2569 2701 2.105528 GCGCCCATTTGATGCCTG 59.894 61.111 0.00 0.00 0.00 4.85
2570 2702 3.149648 GGCGCCCATTTGATGCCT 61.150 61.111 18.11 0.00 42.44 4.75
2571 2703 4.225703 GGGCGCCCATTTGATGCC 62.226 66.667 40.73 8.62 44.98 4.40
2572 2704 3.459965 TGGGCGCCCATTTGATGC 61.460 61.111 44.23 15.73 41.89 3.91
2581 2713 2.724273 AAAAGCATGATGGGCGCCC 61.724 57.895 39.40 39.40 36.08 6.13
2582 2714 1.519898 CAAAAGCATGATGGGCGCC 60.520 57.895 21.18 21.18 36.08 6.53
2583 2715 0.108709 TTCAAAAGCATGATGGGCGC 60.109 50.000 0.00 0.00 36.08 6.53
2584 2716 2.367030 TTTCAAAAGCATGATGGGCG 57.633 45.000 0.00 0.00 36.08 6.13
2585 2717 3.624410 GGATTTTCAAAAGCATGATGGGC 59.376 43.478 0.00 0.00 0.00 5.36
2586 2718 4.834534 TGGATTTTCAAAAGCATGATGGG 58.165 39.130 0.00 0.00 0.00 4.00
2587 2719 6.596106 TGATTGGATTTTCAAAAGCATGATGG 59.404 34.615 0.00 0.00 0.00 3.51
2588 2720 7.603963 TGATTGGATTTTCAAAAGCATGATG 57.396 32.000 0.00 0.00 0.00 3.07
2589 2721 8.265055 AGATGATTGGATTTTCAAAAGCATGAT 58.735 29.630 0.00 0.00 0.00 2.45
2590 2722 7.547722 CAGATGATTGGATTTTCAAAAGCATGA 59.452 33.333 0.00 0.00 0.00 3.07
2591 2723 7.547722 TCAGATGATTGGATTTTCAAAAGCATG 59.452 33.333 0.00 0.00 0.00 4.06
2592 2724 7.617225 TCAGATGATTGGATTTTCAAAAGCAT 58.383 30.769 0.00 0.00 0.00 3.79
2593 2725 6.995364 TCAGATGATTGGATTTTCAAAAGCA 58.005 32.000 0.00 0.00 0.00 3.91
2594 2726 7.385752 TGTTCAGATGATTGGATTTTCAAAAGC 59.614 33.333 0.00 0.00 0.00 3.51
2595 2727 8.821147 TGTTCAGATGATTGGATTTTCAAAAG 57.179 30.769 0.00 0.00 0.00 2.27
2596 2728 8.423349 ACTGTTCAGATGATTGGATTTTCAAAA 58.577 29.630 6.83 0.00 0.00 2.44
2597 2729 7.954835 ACTGTTCAGATGATTGGATTTTCAAA 58.045 30.769 6.83 0.00 0.00 2.69
2598 2730 7.231115 TGACTGTTCAGATGATTGGATTTTCAA 59.769 33.333 6.83 0.00 0.00 2.69
2599 2731 6.716173 TGACTGTTCAGATGATTGGATTTTCA 59.284 34.615 6.83 0.00 0.00 2.69
2600 2732 7.149569 TGACTGTTCAGATGATTGGATTTTC 57.850 36.000 6.83 0.00 0.00 2.29
2615 2747 1.761174 GGGAAGCCCTGACTGTTCA 59.239 57.895 0.00 0.00 41.34 3.18
2616 2748 1.002011 GGGGAAGCCCTGACTGTTC 60.002 63.158 2.01 0.00 44.66 3.18
2617 2749 1.360393 TTGGGGAAGCCCTGACTGTT 61.360 55.000 2.01 0.00 44.66 3.16
2618 2750 1.360393 TTTGGGGAAGCCCTGACTGT 61.360 55.000 2.01 0.00 44.66 3.55
2619 2751 0.040204 ATTTGGGGAAGCCCTGACTG 59.960 55.000 2.01 0.00 44.66 3.51
2620 2752 0.332972 GATTTGGGGAAGCCCTGACT 59.667 55.000 2.01 0.00 44.66 3.41
2621 2753 0.684479 GGATTTGGGGAAGCCCTGAC 60.684 60.000 2.01 0.00 44.66 3.51
2622 2754 1.145900 TGGATTTGGGGAAGCCCTGA 61.146 55.000 2.01 0.00 43.32 3.86
2623 2755 0.685458 CTGGATTTGGGGAAGCCCTG 60.685 60.000 2.01 0.00 43.32 4.45
2624 2756 1.699752 CTGGATTTGGGGAAGCCCT 59.300 57.895 2.01 0.00 43.32 5.19
2625 2757 2.060383 GCTGGATTTGGGGAAGCCC 61.060 63.158 0.00 0.00 43.32 5.19
2626 2758 1.305213 TGCTGGATTTGGGGAAGCC 60.305 57.895 0.00 0.00 44.25 4.35
2627 2759 0.899717 TGTGCTGGATTTGGGGAAGC 60.900 55.000 0.00 0.00 0.00 3.86
2628 2760 1.856629 ATGTGCTGGATTTGGGGAAG 58.143 50.000 0.00 0.00 0.00 3.46
2629 2761 3.298619 CATATGTGCTGGATTTGGGGAA 58.701 45.455 0.00 0.00 0.00 3.97
2630 2762 2.244510 ACATATGTGCTGGATTTGGGGA 59.755 45.455 7.78 0.00 0.00 4.81
2631 2763 2.363038 CACATATGTGCTGGATTTGGGG 59.637 50.000 22.27 0.00 39.39 4.96
2632 2764 3.289836 TCACATATGTGCTGGATTTGGG 58.710 45.455 27.71 3.28 45.25 4.12
2633 2765 3.317149 CCTCACATATGTGCTGGATTTGG 59.683 47.826 28.56 17.37 45.25 3.28
2634 2766 4.201657 TCCTCACATATGTGCTGGATTTG 58.798 43.478 29.85 15.30 45.25 2.32
2635 2767 4.164796 TCTCCTCACATATGTGCTGGATTT 59.835 41.667 31.73 1.84 45.25 2.17
2636 2768 3.713248 TCTCCTCACATATGTGCTGGATT 59.287 43.478 31.73 2.46 45.25 3.01
2637 2769 3.311990 TCTCCTCACATATGTGCTGGAT 58.688 45.455 31.73 3.10 45.25 3.41
2638 2770 2.750814 TCTCCTCACATATGTGCTGGA 58.249 47.619 30.60 30.60 45.25 3.86
2639 2771 3.548745 TTCTCCTCACATATGTGCTGG 57.451 47.619 27.71 27.58 45.25 4.85
2640 2772 4.880120 ACATTTCTCCTCACATATGTGCTG 59.120 41.667 27.71 21.44 45.25 4.41
2641 2773 4.880120 CACATTTCTCCTCACATATGTGCT 59.120 41.667 27.71 4.99 45.25 4.40
2642 2774 4.036027 CCACATTTCTCCTCACATATGTGC 59.964 45.833 27.71 0.00 45.25 4.57
2643 2775 5.188434 ACCACATTTCTCCTCACATATGTG 58.812 41.667 26.83 26.83 46.91 3.21
2644 2776 5.441718 ACCACATTTCTCCTCACATATGT 57.558 39.130 1.41 1.41 0.00 2.29
2645 2777 7.935755 AGATAACCACATTTCTCCTCACATATG 59.064 37.037 0.00 0.00 0.00 1.78
2646 2778 7.935755 CAGATAACCACATTTCTCCTCACATAT 59.064 37.037 0.00 0.00 0.00 1.78
2647 2779 7.275183 CAGATAACCACATTTCTCCTCACATA 58.725 38.462 0.00 0.00 0.00 2.29
2648 2780 6.118170 CAGATAACCACATTTCTCCTCACAT 58.882 40.000 0.00 0.00 0.00 3.21
2649 2781 5.491070 CAGATAACCACATTTCTCCTCACA 58.509 41.667 0.00 0.00 0.00 3.58
2650 2782 4.878397 CCAGATAACCACATTTCTCCTCAC 59.122 45.833 0.00 0.00 0.00 3.51
2651 2783 4.782691 TCCAGATAACCACATTTCTCCTCA 59.217 41.667 0.00 0.00 0.00 3.86
2652 2784 5.104735 AGTCCAGATAACCACATTTCTCCTC 60.105 44.000 0.00 0.00 0.00 3.71
2653 2785 4.785376 AGTCCAGATAACCACATTTCTCCT 59.215 41.667 0.00 0.00 0.00 3.69
2654 2786 5.104259 AGTCCAGATAACCACATTTCTCC 57.896 43.478 0.00 0.00 0.00 3.71
2655 2787 6.931840 GGATAGTCCAGATAACCACATTTCTC 59.068 42.308 0.00 0.00 36.28 2.87
2656 2788 6.386927 TGGATAGTCCAGATAACCACATTTCT 59.613 38.462 0.00 0.00 42.67 2.52
2657 2789 6.591935 TGGATAGTCCAGATAACCACATTTC 58.408 40.000 0.00 0.00 42.67 2.17
2658 2790 6.575244 TGGATAGTCCAGATAACCACATTT 57.425 37.500 0.00 0.00 42.67 2.32
2670 2802 8.479122 TGGAGACAACATGTTGGATAGTCCAG 62.479 46.154 35.20 12.55 42.95 3.86
2671 2803 4.323485 GGAGACAACATGTTGGATAGTCCA 60.323 45.833 35.20 0.00 46.61 4.02
2672 2804 4.192317 GGAGACAACATGTTGGATAGTCC 58.808 47.826 35.20 27.23 44.45 3.85
2673 2805 4.832248 TGGAGACAACATGTTGGATAGTC 58.168 43.478 35.20 24.79 44.45 2.59
2674 2806 4.908601 TGGAGACAACATGTTGGATAGT 57.091 40.909 35.20 18.88 44.45 2.12
2688 2820 1.600107 GGGCCGTGTATTGGAGACA 59.400 57.895 0.00 0.00 39.83 3.41
2689 2821 1.153229 GGGGCCGTGTATTGGAGAC 60.153 63.158 0.00 0.00 0.00 3.36
2690 2822 0.986019 ATGGGGCCGTGTATTGGAGA 60.986 55.000 0.00 0.00 0.00 3.71
2691 2823 0.535102 GATGGGGCCGTGTATTGGAG 60.535 60.000 0.00 0.00 0.00 3.86
2692 2824 1.529796 GATGGGGCCGTGTATTGGA 59.470 57.895 0.00 0.00 0.00 3.53
2693 2825 1.528309 GGATGGGGCCGTGTATTGG 60.528 63.158 0.00 0.00 0.00 3.16
2694 2826 1.528309 GGGATGGGGCCGTGTATTG 60.528 63.158 0.00 0.00 0.00 1.90
2695 2827 2.763645 GGGGATGGGGCCGTGTATT 61.764 63.158 0.00 0.00 0.00 1.89
2696 2828 3.175710 GGGGATGGGGCCGTGTAT 61.176 66.667 0.00 0.00 0.00 2.29
2697 2829 4.743125 TGGGGATGGGGCCGTGTA 62.743 66.667 0.00 0.00 0.00 2.90
2708 2840 2.270874 GAAGGGTGCATCGTGGGGAT 62.271 60.000 0.00 0.00 35.09 3.85
2709 2841 2.933287 AAGGGTGCATCGTGGGGA 60.933 61.111 0.00 0.00 0.00 4.81
2710 2842 2.438434 GAAGGGTGCATCGTGGGG 60.438 66.667 0.00 0.00 0.00 4.96
2711 2843 1.622607 TAGGAAGGGTGCATCGTGGG 61.623 60.000 0.00 0.00 0.00 4.61
2712 2844 0.469917 ATAGGAAGGGTGCATCGTGG 59.530 55.000 0.00 0.00 0.00 4.94
2713 2845 2.332063 AATAGGAAGGGTGCATCGTG 57.668 50.000 0.00 0.00 0.00 4.35
2714 2846 3.016736 CAAAATAGGAAGGGTGCATCGT 58.983 45.455 0.00 0.00 0.00 3.73
2715 2847 3.016736 ACAAAATAGGAAGGGTGCATCG 58.983 45.455 0.00 0.00 0.00 3.84
2716 2848 3.381590 GGACAAAATAGGAAGGGTGCATC 59.618 47.826 0.00 0.00 0.00 3.91
2717 2849 3.011708 AGGACAAAATAGGAAGGGTGCAT 59.988 43.478 0.00 0.00 0.00 3.96
2718 2850 2.378547 AGGACAAAATAGGAAGGGTGCA 59.621 45.455 0.00 0.00 0.00 4.57
2719 2851 3.017442 GAGGACAAAATAGGAAGGGTGC 58.983 50.000 0.00 0.00 0.00 5.01
2720 2852 4.576330 AGAGGACAAAATAGGAAGGGTG 57.424 45.455 0.00 0.00 0.00 4.61
2721 2853 6.910259 AATAGAGGACAAAATAGGAAGGGT 57.090 37.500 0.00 0.00 0.00 4.34
2722 2854 9.695155 TTAAAATAGAGGACAAAATAGGAAGGG 57.305 33.333 0.00 0.00 0.00 3.95
2726 2858 9.169592 CGGTTTAAAATAGAGGACAAAATAGGA 57.830 33.333 0.00 0.00 0.00 2.94
2727 2859 8.403236 CCGGTTTAAAATAGAGGACAAAATAGG 58.597 37.037 0.00 0.00 0.00 2.57
2728 2860 9.169592 TCCGGTTTAAAATAGAGGACAAAATAG 57.830 33.333 0.00 0.00 0.00 1.73
2729 2861 9.689501 ATCCGGTTTAAAATAGAGGACAAAATA 57.310 29.630 0.00 0.00 0.00 1.40
2730 2862 8.466798 CATCCGGTTTAAAATAGAGGACAAAAT 58.533 33.333 0.00 0.00 0.00 1.82
2731 2863 7.666388 TCATCCGGTTTAAAATAGAGGACAAAA 59.334 33.333 0.00 0.00 0.00 2.44
2732 2864 7.120138 GTCATCCGGTTTAAAATAGAGGACAAA 59.880 37.037 16.33 0.79 35.68 2.83
2733 2865 6.596497 GTCATCCGGTTTAAAATAGAGGACAA 59.404 38.462 16.33 2.46 35.68 3.18
2734 2866 6.110707 GTCATCCGGTTTAAAATAGAGGACA 58.889 40.000 16.33 1.53 35.68 4.02
2735 2867 5.233689 CGTCATCCGGTTTAAAATAGAGGAC 59.766 44.000 0.00 13.32 33.13 3.85
2736 2868 5.353938 CGTCATCCGGTTTAAAATAGAGGA 58.646 41.667 0.00 0.00 0.00 3.71
2737 2869 4.025145 GCGTCATCCGGTTTAAAATAGAGG 60.025 45.833 0.00 0.00 36.94 3.69
2738 2870 4.025145 GGCGTCATCCGGTTTAAAATAGAG 60.025 45.833 0.00 0.00 36.94 2.43
2739 2871 3.872771 GGCGTCATCCGGTTTAAAATAGA 59.127 43.478 0.00 0.00 36.94 1.98
2740 2872 3.002965 GGGCGTCATCCGGTTTAAAATAG 59.997 47.826 0.00 0.00 36.94 1.73
2741 2873 2.944349 GGGCGTCATCCGGTTTAAAATA 59.056 45.455 0.00 0.00 36.94 1.40
2742 2874 1.746787 GGGCGTCATCCGGTTTAAAAT 59.253 47.619 0.00 0.00 36.94 1.82
2743 2875 1.166989 GGGCGTCATCCGGTTTAAAA 58.833 50.000 0.00 0.00 36.94 1.52
2744 2876 0.036448 TGGGCGTCATCCGGTTTAAA 59.964 50.000 0.00 0.00 36.94 1.52
2745 2877 0.674269 GTGGGCGTCATCCGGTTTAA 60.674 55.000 0.00 0.00 36.94 1.52
2746 2878 1.078988 GTGGGCGTCATCCGGTTTA 60.079 57.895 0.00 0.00 36.94 2.01
2747 2879 2.359478 GTGGGCGTCATCCGGTTT 60.359 61.111 0.00 0.00 36.94 3.27
2748 2880 2.798148 GAAGTGGGCGTCATCCGGTT 62.798 60.000 0.00 0.00 36.94 4.44
2749 2881 3.310860 GAAGTGGGCGTCATCCGGT 62.311 63.158 0.00 0.00 36.94 5.28
2750 2882 2.511600 GAAGTGGGCGTCATCCGG 60.512 66.667 0.00 0.00 36.94 5.14
2751 2883 1.519455 GAGAAGTGGGCGTCATCCG 60.519 63.158 0.00 0.00 40.40 4.18
2752 2884 1.153349 GGAGAAGTGGGCGTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
2753 2885 0.250513 AAGGAGAAGTGGGCGTCATC 59.749 55.000 0.00 0.00 0.00 2.92
2754 2886 0.250513 GAAGGAGAAGTGGGCGTCAT 59.749 55.000 0.00 0.00 0.00 3.06
2755 2887 1.671742 GAAGGAGAAGTGGGCGTCA 59.328 57.895 0.00 0.00 0.00 4.35
2756 2888 1.446272 CGAAGGAGAAGTGGGCGTC 60.446 63.158 0.00 0.00 0.00 5.19
2757 2889 2.156051 GACGAAGGAGAAGTGGGCGT 62.156 60.000 0.00 0.00 0.00 5.68
2758 2890 1.446272 GACGAAGGAGAAGTGGGCG 60.446 63.158 0.00 0.00 0.00 6.13
2759 2891 0.250513 ATGACGAAGGAGAAGTGGGC 59.749 55.000 0.00 0.00 0.00 5.36
2760 2892 1.827969 AGATGACGAAGGAGAAGTGGG 59.172 52.381 0.00 0.00 0.00 4.61
2761 2893 2.478709 CGAGATGACGAAGGAGAAGTGG 60.479 54.545 0.00 0.00 35.09 4.00
2762 2894 2.791567 CGAGATGACGAAGGAGAAGTG 58.208 52.381 0.00 0.00 35.09 3.16
2763 2895 1.133407 GCGAGATGACGAAGGAGAAGT 59.867 52.381 0.00 0.00 35.09 3.01
2764 2896 1.535015 GGCGAGATGACGAAGGAGAAG 60.535 57.143 0.00 0.00 35.09 2.85
2765 2897 0.456221 GGCGAGATGACGAAGGAGAA 59.544 55.000 0.00 0.00 35.09 2.87
2766 2898 1.384989 GGGCGAGATGACGAAGGAGA 61.385 60.000 0.00 0.00 35.09 3.71
2767 2899 1.066587 GGGCGAGATGACGAAGGAG 59.933 63.158 0.00 0.00 35.09 3.69
2768 2900 1.379977 AGGGCGAGATGACGAAGGA 60.380 57.895 0.00 0.00 35.09 3.36
2769 2901 1.066587 GAGGGCGAGATGACGAAGG 59.933 63.158 0.00 0.00 35.09 3.46
2770 2902 0.030101 GAGAGGGCGAGATGACGAAG 59.970 60.000 0.00 0.00 35.09 3.79
2771 2903 0.394488 AGAGAGGGCGAGATGACGAA 60.394 55.000 0.00 0.00 35.09 3.85
2772 2904 1.224870 AGAGAGGGCGAGATGACGA 59.775 57.895 0.00 0.00 35.09 4.20
2773 2905 3.834726 AGAGAGGGCGAGATGACG 58.165 61.111 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.