Multiple sequence alignment - TraesCS1A01G383000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G383000 chr1A 100.000 2625 0 0 1 2625 553904394 553901770 0.000000e+00 4848.0
1 TraesCS1A01G383000 chr1A 92.593 270 17 3 670 939 482795641 482795907 4.100000e-103 385.0
2 TraesCS1A01G383000 chr1A 93.361 241 16 0 166 406 553912739 553912499 8.930000e-95 357.0
3 TraesCS1A01G383000 chr1B 92.375 1377 69 16 1278 2623 636679669 636678298 0.000000e+00 1929.0
4 TraesCS1A01G383000 chr1B 94.712 624 27 3 1677 2299 636661696 636661078 0.000000e+00 965.0
5 TraesCS1A01G383000 chr1B 95.115 348 9 5 936 1281 636680057 636679716 2.300000e-150 542.0
6 TraesCS1A01G383000 chr1B 93.678 348 13 6 936 1281 636662473 636662133 1.800000e-141 512.0
7 TraesCS1A01G383000 chr1B 92.391 276 21 0 2348 2623 636659018 636658743 6.810000e-106 394.0
8 TraesCS1A01G383000 chr1B 93.785 177 9 2 504 680 636680228 636680054 5.570000e-67 265.0
9 TraesCS1A01G383000 chr1B 93.023 172 11 1 241 412 636663541 636663371 1.560000e-62 250.0
10 TraesCS1A01G383000 chr1B 96.429 84 3 0 166 249 636664905 636664822 3.520000e-29 139.0
11 TraesCS1A01G383000 chr1B 95.775 71 3 0 559 629 636663232 636663162 5.940000e-22 115.0
12 TraesCS1A01G383000 chr1B 87.500 96 11 1 410 504 2433286 2433191 2.760000e-20 110.0
13 TraesCS1A01G383000 chr1B 88.043 92 11 0 410 501 477413027 477412936 2.760000e-20 110.0
14 TraesCS1A01G383000 chr1B 100.000 49 0 0 1278 1326 636662086 636662038 1.000000e-14 91.6
15 TraesCS1A01G383000 chr1B 86.301 73 10 0 429 501 203612163 203612235 2.170000e-11 80.5
16 TraesCS1A01G383000 chr1B 92.593 54 3 1 410 463 363088109 363088161 2.800000e-10 76.8
17 TraesCS1A01G383000 chr1B 97.059 34 1 0 468 501 7547568 7547535 1.010000e-04 58.4
18 TraesCS1A01G383000 chr6D 93.893 262 14 2 677 938 160793770 160794029 6.810000e-106 394.0
19 TraesCS1A01G383000 chr4D 93.585 265 15 1 674 938 414150019 414149757 6.810000e-106 394.0
20 TraesCS1A01G383000 chrUn 92.937 269 19 0 670 938 108799505 108799237 2.450000e-105 392.0
21 TraesCS1A01G383000 chrUn 81.235 405 65 5 1278 1674 38821279 38821680 1.520000e-82 316.0
22 TraesCS1A01G383000 chr7D 93.233 266 18 0 675 940 271759194 271759459 2.450000e-105 392.0
23 TraesCS1A01G383000 chr7D 93.536 263 17 0 677 939 445784964 445784702 2.450000e-105 392.0
24 TraesCS1A01G383000 chr2A 93.561 264 15 2 677 939 513030395 513030657 2.450000e-105 392.0
25 TraesCS1A01G383000 chr2A 98.113 159 3 0 7 165 45035699 45035541 7.160000e-71 278.0
26 TraesCS1A01G383000 chr2A 96.988 166 3 2 5 170 772486971 772486808 7.160000e-71 278.0
27 TraesCS1A01G383000 chr2A 83.529 85 9 3 410 494 709609234 709609313 1.010000e-09 75.0
28 TraesCS1A01G383000 chr3D 92.647 272 15 5 677 948 107043797 107043531 1.140000e-103 387.0
29 TraesCS1A01G383000 chr3D 87.781 311 36 2 1278 1587 26642776 26642467 1.920000e-96 363.0
30 TraesCS1A01G383000 chr3D 76.829 328 42 16 1976 2296 602720533 602720233 1.260000e-33 154.0
31 TraesCS1A01G383000 chr3D 81.910 199 13 7 504 680 26643389 26643192 2.110000e-31 147.0
32 TraesCS1A01G383000 chr4A 91.727 278 20 3 662 938 239032419 239032694 1.470000e-102 383.0
33 TraesCS1A01G383000 chr4A 95.882 170 4 3 5 171 28875325 28875156 3.330000e-69 272.0
34 TraesCS1A01G383000 chr4A 86.066 244 31 2 166 406 542232086 542231843 2.590000e-65 259.0
35 TraesCS1A01G383000 chr4A 85.306 245 28 5 166 406 485134631 485134391 2.020000e-61 246.0
36 TraesCS1A01G383000 chr3B 85.470 351 44 6 1282 1629 44857272 44856926 2.480000e-95 359.0
37 TraesCS1A01G383000 chr3B 82.843 408 54 10 1278 1674 45198436 45198034 4.160000e-93 351.0
38 TraesCS1A01G383000 chr3B 84.036 332 43 6 1278 1603 44847901 44847574 7.050000e-81 311.0
39 TraesCS1A01G383000 chr3B 83.923 311 48 2 1278 1587 45271434 45271125 1.980000e-76 296.0
40 TraesCS1A01G383000 chr3B 80.447 358 46 18 941 1284 45271825 45271478 4.340000e-63 252.0
41 TraesCS1A01G383000 chr3B 91.071 56 5 0 409 464 595276461 595276516 2.800000e-10 76.8
42 TraesCS1A01G383000 chr3B 80.645 93 17 1 409 501 386948032 386948123 1.300000e-08 71.3
43 TraesCS1A01G383000 chr4B 89.046 283 29 2 656 938 14106106 14105826 1.500000e-92 350.0
44 TraesCS1A01G383000 chr4B 91.667 48 4 0 467 514 524614995 524614948 1.690000e-07 67.6
45 TraesCS1A01G383000 chr3A 82.469 405 60 5 1278 1674 36770566 36770165 6.960000e-91 344.0
46 TraesCS1A01G383000 chr3A 98.137 161 3 0 5 165 654709015 654708855 5.530000e-72 281.0
47 TraesCS1A01G383000 chr3A 98.101 158 3 0 8 165 4726920 4726763 2.570000e-70 276.0
48 TraesCS1A01G383000 chr3A 96.951 164 5 0 5 168 61901515 61901352 2.570000e-70 276.0
49 TraesCS1A01G383000 chr3A 84.825 257 24 9 951 1203 36722224 36721979 7.260000e-61 244.0
50 TraesCS1A01G383000 chr7A 97.576 165 4 0 2 166 711614511 711614675 1.540000e-72 283.0
51 TraesCS1A01G383000 chr7A 96.951 164 5 0 5 168 179088615 179088452 2.570000e-70 276.0
52 TraesCS1A01G383000 chr5A 98.137 161 3 0 5 165 643892223 643892063 5.530000e-72 281.0
53 TraesCS1A01G383000 chr5A 94.444 36 2 0 466 501 73316051 73316016 3.650000e-04 56.5
54 TraesCS1A01G383000 chr2D 76.694 369 59 17 1942 2299 538780711 538780359 2.080000e-41 180.0
55 TraesCS1A01G383000 chr2D 86.000 100 12 2 409 507 460845430 460845528 3.570000e-19 106.0
56 TraesCS1A01G383000 chr7B 90.741 54 5 0 410 463 672759780 672759727 3.620000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G383000 chr1A 553901770 553904394 2624 True 4848.000000 4848 100.000000 1 2625 1 chr1A.!!$R1 2624
1 TraesCS1A01G383000 chr1B 636678298 636680228 1930 True 912.000000 1929 93.758333 504 2623 3 chr1B.!!$R5 2119
2 TraesCS1A01G383000 chr1B 636658743 636664905 6162 True 352.371429 965 95.144000 166 2623 7 chr1B.!!$R4 2457
3 TraesCS1A01G383000 chr3D 26642467 26643389 922 True 255.000000 363 84.845500 504 1587 2 chr3D.!!$R3 1083
4 TraesCS1A01G383000 chr3B 45271125 45271825 700 True 274.000000 296 82.185000 941 1587 2 chr3B.!!$R4 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.176449 CCGAACCGGTACTAAAGGGG 59.824 60.0 8.0 0.0 42.73 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1862 3978 0.519175 CGTCTTACATTGCTGCGTGC 60.519 55.0 4.97 0.0 43.25 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.574428 CACGTGGTGGCACTTTAGC 59.426 57.895 18.45 0.25 0.00 3.09
41 42 1.959226 ACGTGGTGGCACTTTAGCG 60.959 57.895 18.45 15.80 34.64 4.26
42 43 1.959226 CGTGGTGGCACTTTAGCGT 60.959 57.895 18.45 0.00 34.64 5.07
43 44 1.866925 GTGGTGGCACTTTAGCGTC 59.133 57.895 18.45 0.00 34.64 5.19
44 45 1.666553 TGGTGGCACTTTAGCGTCG 60.667 57.895 18.45 0.00 34.64 5.12
45 46 2.388232 GGTGGCACTTTAGCGTCGG 61.388 63.158 18.45 0.00 34.64 4.79
46 47 1.666872 GTGGCACTTTAGCGTCGGT 60.667 57.895 11.13 1.19 34.64 4.69
47 48 1.070105 TGGCACTTTAGCGTCGGTT 59.930 52.632 0.65 0.00 34.64 4.44
48 49 0.947180 TGGCACTTTAGCGTCGGTTC 60.947 55.000 0.65 0.00 34.64 3.62
49 50 1.414897 GCACTTTAGCGTCGGTTCG 59.585 57.895 0.65 0.00 0.00 3.95
50 51 1.280206 GCACTTTAGCGTCGGTTCGT 61.280 55.000 0.65 0.00 0.00 3.85
51 52 0.433492 CACTTTAGCGTCGGTTCGTG 59.567 55.000 0.65 4.29 0.00 4.35
52 53 1.280206 ACTTTAGCGTCGGTTCGTGC 61.280 55.000 0.65 0.00 0.00 5.34
53 54 1.952266 CTTTAGCGTCGGTTCGTGCC 61.952 60.000 0.65 0.00 32.13 5.01
70 71 3.746900 CCGAACCGGTACTAAAGGG 57.253 57.895 8.00 0.00 42.73 3.95
71 72 0.176449 CCGAACCGGTACTAAAGGGG 59.824 60.000 8.00 0.00 42.73 4.79
72 73 0.176449 CGAACCGGTACTAAAGGGGG 59.824 60.000 8.00 0.00 0.00 5.40
112 113 6.888430 CACTAATTAGTGCCGATTATGGAAC 58.112 40.000 27.90 0.00 46.03 3.62
113 114 5.995897 ACTAATTAGTGCCGATTATGGAACC 59.004 40.000 17.35 0.00 38.46 3.62
114 115 2.519377 TAGTGCCGATTATGGAACCG 57.481 50.000 0.00 0.00 38.46 4.44
115 116 0.179056 AGTGCCGATTATGGAACCGG 60.179 55.000 0.00 0.00 38.46 5.28
117 118 4.868026 CCGATTATGGAACCGGCA 57.132 55.556 0.00 0.00 35.29 5.69
118 119 2.317230 CCGATTATGGAACCGGCAC 58.683 57.895 0.00 0.00 35.29 5.01
119 120 0.179056 CCGATTATGGAACCGGCACT 60.179 55.000 0.00 0.00 35.29 4.40
120 121 1.069513 CCGATTATGGAACCGGCACTA 59.930 52.381 0.00 0.00 35.29 2.74
121 122 2.484065 CCGATTATGGAACCGGCACTAA 60.484 50.000 0.00 0.00 35.29 2.24
122 123 3.199677 CGATTATGGAACCGGCACTAAA 58.800 45.455 0.00 0.00 0.00 1.85
123 124 3.247648 CGATTATGGAACCGGCACTAAAG 59.752 47.826 0.00 0.00 0.00 1.85
124 125 2.702592 TATGGAACCGGCACTAAAGG 57.297 50.000 0.00 0.00 0.00 3.11
125 126 0.679960 ATGGAACCGGCACTAAAGGC 60.680 55.000 0.00 0.00 0.00 4.35
132 133 2.776659 GGCACTAAAGGCCCTTACG 58.223 57.895 0.00 0.00 45.87 3.18
133 134 0.251073 GGCACTAAAGGCCCTTACGA 59.749 55.000 0.00 0.00 45.87 3.43
134 135 1.339342 GGCACTAAAGGCCCTTACGAA 60.339 52.381 0.00 0.00 45.87 3.85
135 136 1.736126 GCACTAAAGGCCCTTACGAAC 59.264 52.381 0.00 0.00 0.00 3.95
136 137 2.353323 CACTAAAGGCCCTTACGAACC 58.647 52.381 0.00 0.00 0.00 3.62
137 138 1.066645 ACTAAAGGCCCTTACGAACCG 60.067 52.381 0.00 0.00 0.00 4.44
138 139 0.249955 TAAAGGCCCTTACGAACCGG 59.750 55.000 0.00 0.00 0.00 5.28
139 140 1.771783 AAAGGCCCTTACGAACCGGT 61.772 55.000 0.00 0.00 0.00 5.28
140 141 1.771783 AAGGCCCTTACGAACCGGTT 61.772 55.000 22.50 22.50 0.00 4.44
141 142 1.302752 GGCCCTTACGAACCGGTTT 60.303 57.895 23.22 9.26 0.00 3.27
142 143 0.890542 GGCCCTTACGAACCGGTTTT 60.891 55.000 23.22 14.26 0.00 2.43
143 144 1.610363 GGCCCTTACGAACCGGTTTTA 60.610 52.381 23.22 13.17 0.00 1.52
144 145 2.150390 GCCCTTACGAACCGGTTTTAA 58.850 47.619 23.22 19.35 0.00 1.52
145 146 2.551887 GCCCTTACGAACCGGTTTTAAA 59.448 45.455 23.22 14.20 0.00 1.52
146 147 3.365264 GCCCTTACGAACCGGTTTTAAAG 60.365 47.826 23.22 21.71 0.00 1.85
147 148 3.365264 CCCTTACGAACCGGTTTTAAAGC 60.365 47.826 23.22 6.32 0.00 3.51
148 149 3.499537 CCTTACGAACCGGTTTTAAAGCT 59.500 43.478 23.22 0.00 0.00 3.74
149 150 4.377738 CCTTACGAACCGGTTTTAAAGCTC 60.378 45.833 23.22 4.78 0.00 4.09
150 151 1.875514 ACGAACCGGTTTTAAAGCTCC 59.124 47.619 23.22 3.91 0.00 4.70
151 152 1.136169 CGAACCGGTTTTAAAGCTCCG 60.136 52.381 23.22 12.96 42.22 4.63
152 153 1.875514 GAACCGGTTTTAAAGCTCCGT 59.124 47.619 23.22 0.00 41.17 4.69
153 154 1.971481 ACCGGTTTTAAAGCTCCGTT 58.029 45.000 0.00 9.12 41.17 4.44
154 155 2.300433 ACCGGTTTTAAAGCTCCGTTT 58.700 42.857 0.00 9.30 41.17 3.60
155 156 2.689471 ACCGGTTTTAAAGCTCCGTTTT 59.311 40.909 0.00 7.64 41.17 2.43
156 157 3.243168 ACCGGTTTTAAAGCTCCGTTTTC 60.243 43.478 0.00 0.00 41.17 2.29
157 158 3.004002 CCGGTTTTAAAGCTCCGTTTTCT 59.996 43.478 19.38 0.00 41.17 2.52
158 159 4.213906 CCGGTTTTAAAGCTCCGTTTTCTA 59.786 41.667 19.38 0.00 41.17 2.10
159 160 5.142265 CGGTTTTAAAGCTCCGTTTTCTAC 58.858 41.667 15.48 0.00 38.45 2.59
160 161 5.049886 CGGTTTTAAAGCTCCGTTTTCTACT 60.050 40.000 15.48 0.00 38.45 2.57
161 162 6.146021 CGGTTTTAAAGCTCCGTTTTCTACTA 59.854 38.462 15.48 0.00 38.45 1.82
162 163 7.516481 GGTTTTAAAGCTCCGTTTTCTACTAG 58.484 38.462 1.91 0.00 0.00 2.57
163 164 7.172190 GGTTTTAAAGCTCCGTTTTCTACTAGT 59.828 37.037 0.00 0.00 0.00 2.57
164 165 7.647907 TTTAAAGCTCCGTTTTCTACTAGTG 57.352 36.000 5.39 0.00 0.00 2.74
171 172 6.147328 GCTCCGTTTTCTACTAGTGTTCAAAT 59.853 38.462 5.39 0.00 0.00 2.32
274 1564 8.969260 TTGAGAATAGCACATATGACATTTCT 57.031 30.769 10.38 12.06 0.00 2.52
318 1608 5.883503 AAAAGGTGTAGACGAACAAACAA 57.116 34.783 0.00 0.00 0.00 2.83
319 1609 5.883503 AAAGGTGTAGACGAACAAACAAA 57.116 34.783 0.00 0.00 0.00 2.83
322 1612 4.879545 AGGTGTAGACGAACAAACAAACAT 59.120 37.500 0.00 0.00 0.00 2.71
381 1671 3.181826 TGAATTGCATTGTCGAACGTC 57.818 42.857 0.00 0.00 0.00 4.34
386 1676 1.062258 GCATTGTCGAACGTCCGTTA 58.938 50.000 4.89 0.00 38.60 3.18
390 1680 0.380024 TGTCGAACGTCCGTTACACA 59.620 50.000 4.89 8.25 38.60 3.72
392 1682 1.384409 GTCGAACGTCCGTTACACATG 59.616 52.381 4.89 0.00 38.60 3.21
395 1685 1.730064 GAACGTCCGTTACACATGCAT 59.270 47.619 4.89 0.00 38.60 3.96
399 1689 2.095969 CGTCCGTTACACATGCATGTTT 60.096 45.455 29.48 25.11 39.39 2.83
400 1690 3.123790 CGTCCGTTACACATGCATGTTTA 59.876 43.478 29.48 24.00 39.39 2.01
401 1691 4.399978 GTCCGTTACACATGCATGTTTAC 58.600 43.478 29.48 23.01 39.39 2.01
402 1692 4.153475 GTCCGTTACACATGCATGTTTACT 59.847 41.667 29.48 14.22 39.39 2.24
403 1693 5.349270 GTCCGTTACACATGCATGTTTACTA 59.651 40.000 29.48 11.10 39.39 1.82
404 1694 5.579119 TCCGTTACACATGCATGTTTACTAG 59.421 40.000 29.48 18.82 39.39 2.57
405 1695 5.350365 CCGTTACACATGCATGTTTACTAGT 59.650 40.000 29.48 23.16 39.39 2.57
406 1696 6.532302 CCGTTACACATGCATGTTTACTAGTA 59.468 38.462 29.48 22.17 39.39 1.82
407 1697 7.388712 CGTTACACATGCATGTTTACTAGTAC 58.611 38.462 29.48 18.95 39.39 2.73
408 1698 7.388712 GTTACACATGCATGTTTACTAGTACG 58.611 38.462 29.48 16.00 39.39 3.67
409 1699 5.475719 ACACATGCATGTTTACTAGTACGT 58.524 37.500 29.48 16.64 39.39 3.57
410 1700 6.623486 ACACATGCATGTTTACTAGTACGTA 58.377 36.000 29.48 0.00 39.39 3.57
411 1701 6.529125 ACACATGCATGTTTACTAGTACGTAC 59.471 38.462 29.48 18.10 39.39 3.67
412 1702 6.750501 CACATGCATGTTTACTAGTACGTACT 59.249 38.462 29.48 29.62 39.39 2.73
413 1703 6.971184 ACATGCATGTTTACTAGTACGTACTC 59.029 38.462 30.53 16.00 37.90 2.59
414 1704 5.883661 TGCATGTTTACTAGTACGTACTCC 58.116 41.667 30.53 13.30 37.73 3.85
415 1705 5.163622 TGCATGTTTACTAGTACGTACTCCC 60.164 44.000 30.53 13.62 37.73 4.30
416 1706 5.067023 GCATGTTTACTAGTACGTACTCCCT 59.933 44.000 30.53 16.34 37.73 4.20
417 1707 6.405176 GCATGTTTACTAGTACGTACTCCCTT 60.405 42.308 30.53 15.64 37.73 3.95
418 1708 6.743575 TGTTTACTAGTACGTACTCCCTTC 57.256 41.667 30.53 17.41 37.73 3.46
419 1709 5.351465 TGTTTACTAGTACGTACTCCCTTCG 59.649 44.000 30.53 15.13 37.73 3.79
420 1710 3.618690 ACTAGTACGTACTCCCTTCGT 57.381 47.619 30.53 15.70 40.78 3.85
421 1711 3.944087 ACTAGTACGTACTCCCTTCGTT 58.056 45.455 30.53 7.49 38.69 3.85
422 1712 4.327680 ACTAGTACGTACTCCCTTCGTTT 58.672 43.478 30.53 6.75 38.69 3.60
423 1713 4.762251 ACTAGTACGTACTCCCTTCGTTTT 59.238 41.667 30.53 6.23 38.69 2.43
424 1714 5.938125 ACTAGTACGTACTCCCTTCGTTTTA 59.062 40.000 30.53 8.71 38.69 1.52
425 1715 5.705609 AGTACGTACTCCCTTCGTTTTAA 57.294 39.130 22.45 0.00 38.69 1.52
426 1716 6.084326 AGTACGTACTCCCTTCGTTTTAAA 57.916 37.500 22.45 0.00 38.69 1.52
427 1717 6.512297 AGTACGTACTCCCTTCGTTTTAAAA 58.488 36.000 22.45 0.00 38.69 1.52
428 1718 7.154656 AGTACGTACTCCCTTCGTTTTAAAAT 58.845 34.615 22.45 0.00 38.69 1.82
429 1719 8.303876 AGTACGTACTCCCTTCGTTTTAAAATA 58.696 33.333 22.45 0.00 38.69 1.40
430 1720 7.586714 ACGTACTCCCTTCGTTTTAAAATAG 57.413 36.000 3.52 2.26 34.07 1.73
431 1721 7.378181 ACGTACTCCCTTCGTTTTAAAATAGA 58.622 34.615 3.52 4.62 34.07 1.98
432 1722 8.037166 ACGTACTCCCTTCGTTTTAAAATAGAT 58.963 33.333 3.52 0.00 34.07 1.98
433 1723 8.325997 CGTACTCCCTTCGTTTTAAAATAGATG 58.674 37.037 3.52 8.94 0.00 2.90
434 1724 9.374838 GTACTCCCTTCGTTTTAAAATAGATGA 57.625 33.333 3.52 4.51 0.00 2.92
435 1725 8.265165 ACTCCCTTCGTTTTAAAATAGATGAC 57.735 34.615 3.52 0.00 0.00 3.06
436 1726 8.101419 ACTCCCTTCGTTTTAAAATAGATGACT 58.899 33.333 3.52 0.00 0.00 3.41
437 1727 8.488651 TCCCTTCGTTTTAAAATAGATGACTC 57.511 34.615 3.52 0.00 0.00 3.36
438 1728 7.277098 TCCCTTCGTTTTAAAATAGATGACTCG 59.723 37.037 3.52 0.06 0.00 4.18
439 1729 7.277098 CCCTTCGTTTTAAAATAGATGACTCGA 59.723 37.037 3.52 2.48 0.00 4.04
440 1730 8.818057 CCTTCGTTTTAAAATAGATGACTCGAT 58.182 33.333 3.52 0.00 0.00 3.59
484 1774 9.384764 AGAAAGCTAGTACAAAATTAGGTCATC 57.615 33.333 0.00 0.00 0.00 2.92
485 1775 9.384764 GAAAGCTAGTACAAAATTAGGTCATCT 57.615 33.333 0.00 0.00 0.00 2.90
498 1788 9.768215 AAATTAGGTCATCTATTTTGGAAAGGA 57.232 29.630 0.00 0.00 33.07 3.36
499 1789 8.986929 ATTAGGTCATCTATTTTGGAAAGGAG 57.013 34.615 0.00 0.00 0.00 3.69
500 1790 5.760131 AGGTCATCTATTTTGGAAAGGAGG 58.240 41.667 0.00 0.00 0.00 4.30
501 1791 5.492524 AGGTCATCTATTTTGGAAAGGAGGA 59.507 40.000 0.00 0.00 0.00 3.71
502 1792 6.011628 AGGTCATCTATTTTGGAAAGGAGGAA 60.012 38.462 0.00 0.00 0.00 3.36
535 1825 1.303561 GGCACATGAGGCACAAGGA 60.304 57.895 11.81 0.00 0.00 3.36
612 1997 4.725790 TGGAGATATGGCGTATGATCTG 57.274 45.455 3.45 0.00 0.00 2.90
676 2702 6.849085 AGTGTGAGATATATGCTTCCTAGG 57.151 41.667 0.82 0.82 0.00 3.02
677 2703 6.318913 AGTGTGAGATATATGCTTCCTAGGT 58.681 40.000 9.08 0.00 0.00 3.08
678 2704 7.471041 AGTGTGAGATATATGCTTCCTAGGTA 58.529 38.462 9.08 0.00 0.00 3.08
679 2705 8.119246 AGTGTGAGATATATGCTTCCTAGGTAT 58.881 37.037 9.08 1.30 0.00 2.73
680 2706 8.754080 GTGTGAGATATATGCTTCCTAGGTATT 58.246 37.037 9.08 0.00 0.00 1.89
681 2707 8.972127 TGTGAGATATATGCTTCCTAGGTATTC 58.028 37.037 9.08 0.00 0.00 1.75
682 2708 8.417884 GTGAGATATATGCTTCCTAGGTATTCC 58.582 40.741 9.08 0.00 0.00 3.01
683 2709 7.565398 TGAGATATATGCTTCCTAGGTATTCCC 59.435 40.741 9.08 0.00 0.00 3.97
685 2711 7.787424 AGATATATGCTTCCTAGGTATTCCCTC 59.213 40.741 9.08 0.00 44.81 4.30
686 2712 2.690840 TGCTTCCTAGGTATTCCCTCC 58.309 52.381 9.08 0.00 44.81 4.30
687 2713 1.619332 GCTTCCTAGGTATTCCCTCCG 59.381 57.143 9.08 0.00 44.81 4.63
688 2714 2.960163 CTTCCTAGGTATTCCCTCCGT 58.040 52.381 9.08 0.00 44.81 4.69
689 2715 3.306613 CTTCCTAGGTATTCCCTCCGTT 58.693 50.000 9.08 0.00 44.81 4.44
690 2716 3.409804 TCCTAGGTATTCCCTCCGTTT 57.590 47.619 9.08 0.00 44.81 3.60
691 2717 3.303049 TCCTAGGTATTCCCTCCGTTTC 58.697 50.000 9.08 0.00 44.81 2.78
692 2718 3.052338 TCCTAGGTATTCCCTCCGTTTCT 60.052 47.826 9.08 0.00 44.81 2.52
693 2719 3.710165 CCTAGGTATTCCCTCCGTTTCTT 59.290 47.826 0.00 0.00 44.81 2.52
694 2720 4.163649 CCTAGGTATTCCCTCCGTTTCTTT 59.836 45.833 0.00 0.00 44.81 2.52
695 2721 4.652679 AGGTATTCCCTCCGTTTCTTTT 57.347 40.909 0.00 0.00 40.71 2.27
696 2722 4.994282 AGGTATTCCCTCCGTTTCTTTTT 58.006 39.130 0.00 0.00 40.71 1.94
697 2723 6.130692 AGGTATTCCCTCCGTTTCTTTTTA 57.869 37.500 0.00 0.00 40.71 1.52
698 2724 5.942236 AGGTATTCCCTCCGTTTCTTTTTAC 59.058 40.000 0.00 0.00 40.71 2.01
699 2725 5.942236 GGTATTCCCTCCGTTTCTTTTTACT 59.058 40.000 0.00 0.00 0.00 2.24
700 2726 6.093219 GGTATTCCCTCCGTTTCTTTTTACTC 59.907 42.308 0.00 0.00 0.00 2.59
701 2727 4.011966 TCCCTCCGTTTCTTTTTACTCC 57.988 45.455 0.00 0.00 0.00 3.85
702 2728 2.740447 CCCTCCGTTTCTTTTTACTCCG 59.260 50.000 0.00 0.00 0.00 4.63
703 2729 2.159037 CCTCCGTTTCTTTTTACTCCGC 59.841 50.000 0.00 0.00 0.00 5.54
704 2730 2.803956 CTCCGTTTCTTTTTACTCCGCA 59.196 45.455 0.00 0.00 0.00 5.69
705 2731 3.404899 TCCGTTTCTTTTTACTCCGCAT 58.595 40.909 0.00 0.00 0.00 4.73
706 2732 4.567971 TCCGTTTCTTTTTACTCCGCATA 58.432 39.130 0.00 0.00 0.00 3.14
707 2733 5.180271 TCCGTTTCTTTTTACTCCGCATAT 58.820 37.500 0.00 0.00 0.00 1.78
708 2734 6.339730 TCCGTTTCTTTTTACTCCGCATATA 58.660 36.000 0.00 0.00 0.00 0.86
709 2735 6.817641 TCCGTTTCTTTTTACTCCGCATATAA 59.182 34.615 0.00 0.00 0.00 0.98
710 2736 7.333921 TCCGTTTCTTTTTACTCCGCATATAAA 59.666 33.333 0.00 0.00 0.00 1.40
711 2737 7.964011 CCGTTTCTTTTTACTCCGCATATAAAA 59.036 33.333 0.00 0.00 0.00 1.52
712 2738 9.498307 CGTTTCTTTTTACTCCGCATATAAAAT 57.502 29.630 0.00 0.00 30.18 1.82
716 2742 9.796120 TCTTTTTACTCCGCATATAAAATTTGG 57.204 29.630 0.00 0.00 30.18 3.28
717 2743 9.581099 CTTTTTACTCCGCATATAAAATTTGGT 57.419 29.630 0.00 0.00 30.18 3.67
718 2744 9.575783 TTTTTACTCCGCATATAAAATTTGGTC 57.424 29.630 0.00 0.00 30.18 4.02
719 2745 7.867305 TTACTCCGCATATAAAATTTGGTCA 57.133 32.000 0.00 0.00 0.00 4.02
720 2746 6.767524 ACTCCGCATATAAAATTTGGTCAA 57.232 33.333 0.00 0.00 0.00 3.18
721 2747 7.164230 ACTCCGCATATAAAATTTGGTCAAA 57.836 32.000 0.00 0.00 34.46 2.69
722 2748 7.257722 ACTCCGCATATAAAATTTGGTCAAAG 58.742 34.615 0.00 0.00 33.32 2.77
723 2749 7.093945 ACTCCGCATATAAAATTTGGTCAAAGT 60.094 33.333 0.00 0.00 33.32 2.66
724 2750 7.254852 TCCGCATATAAAATTTGGTCAAAGTC 58.745 34.615 0.00 0.00 33.32 3.01
725 2751 7.032580 CCGCATATAAAATTTGGTCAAAGTCA 58.967 34.615 0.00 0.00 33.32 3.41
726 2752 7.543868 CCGCATATAAAATTTGGTCAAAGTCAA 59.456 33.333 0.00 0.00 33.32 3.18
727 2753 8.920665 CGCATATAAAATTTGGTCAAAGTCAAA 58.079 29.630 0.00 0.00 37.29 2.69
731 2757 6.421377 AAAATTTGGTCAAAGTCAAACTGC 57.579 33.333 0.00 0.00 35.97 4.40
732 2758 4.734398 ATTTGGTCAAAGTCAAACTGCA 57.266 36.364 2.55 0.00 35.97 4.41
733 2759 3.502191 TTGGTCAAAGTCAAACTGCAC 57.498 42.857 0.00 0.00 0.00 4.57
734 2760 2.441410 TGGTCAAAGTCAAACTGCACA 58.559 42.857 0.00 0.00 0.00 4.57
735 2761 2.822561 TGGTCAAAGTCAAACTGCACAA 59.177 40.909 0.00 0.00 0.00 3.33
736 2762 3.256879 TGGTCAAAGTCAAACTGCACAAA 59.743 39.130 0.00 0.00 0.00 2.83
737 2763 3.859386 GGTCAAAGTCAAACTGCACAAAG 59.141 43.478 0.00 0.00 0.00 2.77
738 2764 4.485163 GTCAAAGTCAAACTGCACAAAGT 58.515 39.130 0.00 0.00 0.00 2.66
739 2765 4.923281 GTCAAAGTCAAACTGCACAAAGTT 59.077 37.500 0.00 0.00 42.21 2.66
745 2771 3.951775 AAACTGCACAAAGTTTGACCA 57.048 38.095 22.23 15.46 46.16 4.02
746 2772 3.951775 AACTGCACAAAGTTTGACCAA 57.048 38.095 22.23 4.11 37.05 3.67
747 2773 3.951775 ACTGCACAAAGTTTGACCAAA 57.048 38.095 22.23 2.48 0.00 3.28
748 2774 4.470334 ACTGCACAAAGTTTGACCAAAT 57.530 36.364 22.23 6.71 32.36 2.32
749 2775 4.831107 ACTGCACAAAGTTTGACCAAATT 58.169 34.783 22.23 0.00 32.36 1.82
750 2776 5.244755 ACTGCACAAAGTTTGACCAAATTT 58.755 33.333 22.23 0.00 32.66 1.82
751 2777 6.402222 ACTGCACAAAGTTTGACCAAATTTA 58.598 32.000 22.23 0.00 31.37 1.40
752 2778 7.047271 ACTGCACAAAGTTTGACCAAATTTAT 58.953 30.769 22.23 0.00 31.37 1.40
753 2779 8.200792 ACTGCACAAAGTTTGACCAAATTTATA 58.799 29.630 22.23 0.00 31.37 0.98
754 2780 9.206870 CTGCACAAAGTTTGACCAAATTTATAT 57.793 29.630 22.23 0.00 31.37 0.86
816 2842 5.888691 ATGAACATACGTTTTATGGTGCA 57.111 34.783 0.00 0.00 34.75 4.57
817 2843 5.888691 TGAACATACGTTTTATGGTGCAT 57.111 34.783 0.00 0.00 34.75 3.96
818 2844 5.874831 TGAACATACGTTTTATGGTGCATC 58.125 37.500 0.00 0.00 34.75 3.91
819 2845 5.645929 TGAACATACGTTTTATGGTGCATCT 59.354 36.000 0.00 0.00 34.75 2.90
820 2846 5.484173 ACATACGTTTTATGGTGCATCTG 57.516 39.130 0.00 0.00 0.00 2.90
821 2847 5.182487 ACATACGTTTTATGGTGCATCTGA 58.818 37.500 0.00 0.00 0.00 3.27
822 2848 5.822519 ACATACGTTTTATGGTGCATCTGAT 59.177 36.000 0.00 0.00 0.00 2.90
823 2849 6.989759 ACATACGTTTTATGGTGCATCTGATA 59.010 34.615 0.00 0.00 0.00 2.15
824 2850 7.497579 ACATACGTTTTATGGTGCATCTGATAA 59.502 33.333 0.00 0.00 0.00 1.75
825 2851 6.942532 ACGTTTTATGGTGCATCTGATAAT 57.057 33.333 0.00 0.00 0.00 1.28
826 2852 9.719355 ATACGTTTTATGGTGCATCTGATAATA 57.281 29.630 0.00 0.00 0.00 0.98
827 2853 8.621532 ACGTTTTATGGTGCATCTGATAATAT 57.378 30.769 0.00 0.00 0.00 1.28
828 2854 9.066892 ACGTTTTATGGTGCATCTGATAATATT 57.933 29.630 0.00 0.00 0.00 1.28
829 2855 9.333497 CGTTTTATGGTGCATCTGATAATATTG 57.667 33.333 0.00 0.00 0.00 1.90
835 2861 8.694581 TGGTGCATCTGATAATATTGATTTCA 57.305 30.769 0.00 0.00 0.00 2.69
836 2862 9.304335 TGGTGCATCTGATAATATTGATTTCAT 57.696 29.630 0.00 0.00 0.00 2.57
893 2919 9.726438 ATTAGTCAAACACTATTAAGCTTGACT 57.274 29.630 9.86 16.72 44.45 3.41
894 2920 9.555727 TTAGTCAAACACTATTAAGCTTGACTT 57.444 29.630 17.47 5.64 42.23 3.01
895 2921 8.451908 AGTCAAACACTATTAAGCTTGACTTT 57.548 30.769 9.86 0.00 42.23 2.66
896 2922 8.345565 AGTCAAACACTATTAAGCTTGACTTTG 58.654 33.333 9.86 7.12 42.23 2.77
897 2923 8.342634 GTCAAACACTATTAAGCTTGACTTTGA 58.657 33.333 9.86 9.13 39.97 2.69
898 2924 8.342634 TCAAACACTATTAAGCTTGACTTTGAC 58.657 33.333 9.86 0.00 39.97 3.18
899 2925 6.803154 ACACTATTAAGCTTGACTTTGACC 57.197 37.500 9.86 0.00 39.97 4.02
900 2926 6.296026 ACACTATTAAGCTTGACTTTGACCA 58.704 36.000 9.86 0.00 39.97 4.02
901 2927 6.770785 ACACTATTAAGCTTGACTTTGACCAA 59.229 34.615 9.86 0.00 39.97 3.67
902 2928 7.284489 ACACTATTAAGCTTGACTTTGACCAAA 59.716 33.333 9.86 0.00 39.97 3.28
903 2929 7.591426 CACTATTAAGCTTGACTTTGACCAAAC 59.409 37.037 9.86 0.00 39.97 2.93
904 2930 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
905 2931 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
906 2932 2.952310 AGCTTGACTTTGACCAAACCTC 59.048 45.455 0.00 0.00 0.00 3.85
907 2933 2.687935 GCTTGACTTTGACCAAACCTCA 59.312 45.455 0.00 0.00 0.00 3.86
908 2934 3.319122 GCTTGACTTTGACCAAACCTCAT 59.681 43.478 0.00 0.00 0.00 2.90
909 2935 4.518970 GCTTGACTTTGACCAAACCTCATA 59.481 41.667 0.00 0.00 0.00 2.15
910 2936 5.183904 GCTTGACTTTGACCAAACCTCATAT 59.816 40.000 0.00 0.00 0.00 1.78
911 2937 6.374333 GCTTGACTTTGACCAAACCTCATATA 59.626 38.462 0.00 0.00 0.00 0.86
912 2938 7.626452 GCTTGACTTTGACCAAACCTCATATAC 60.626 40.741 0.00 0.00 0.00 1.47
913 2939 5.872617 TGACTTTGACCAAACCTCATATACG 59.127 40.000 0.00 0.00 0.00 3.06
914 2940 5.183228 ACTTTGACCAAACCTCATATACGG 58.817 41.667 0.00 0.00 0.00 4.02
915 2941 5.046159 ACTTTGACCAAACCTCATATACGGA 60.046 40.000 0.00 0.00 0.00 4.69
916 2942 4.395959 TGACCAAACCTCATATACGGAC 57.604 45.455 0.00 0.00 0.00 4.79
917 2943 4.028131 TGACCAAACCTCATATACGGACT 58.972 43.478 0.00 0.00 0.00 3.85
918 2944 5.202765 TGACCAAACCTCATATACGGACTA 58.797 41.667 0.00 0.00 0.00 2.59
919 2945 5.657745 TGACCAAACCTCATATACGGACTAA 59.342 40.000 0.00 0.00 0.00 2.24
920 2946 6.154877 TGACCAAACCTCATATACGGACTAAA 59.845 38.462 0.00 0.00 0.00 1.85
921 2947 6.949715 ACCAAACCTCATATACGGACTAAAA 58.050 36.000 0.00 0.00 0.00 1.52
922 2948 7.396418 ACCAAACCTCATATACGGACTAAAAA 58.604 34.615 0.00 0.00 0.00 1.94
923 2949 7.551617 ACCAAACCTCATATACGGACTAAAAAG 59.448 37.037 0.00 0.00 0.00 2.27
924 2950 7.767198 CCAAACCTCATATACGGACTAAAAAGA 59.233 37.037 0.00 0.00 0.00 2.52
925 2951 9.326413 CAAACCTCATATACGGACTAAAAAGAT 57.674 33.333 0.00 0.00 0.00 2.40
928 2954 9.584008 ACCTCATATACGGACTAAAAAGATAGA 57.416 33.333 0.00 0.00 0.00 1.98
933 2959 5.855740 ACGGACTAAAAAGATAGAGAGGG 57.144 43.478 0.00 0.00 0.00 4.30
934 2960 5.516984 ACGGACTAAAAAGATAGAGAGGGA 58.483 41.667 0.00 0.00 0.00 4.20
994 3052 0.831966 TGATACACCGCCCCGTTAAT 59.168 50.000 0.00 0.00 0.00 1.40
1053 3119 0.179029 GGAGGGAGAGACCGAGAGAG 60.179 65.000 0.00 0.00 40.11 3.20
1131 3197 2.000803 TCCTCCTACTTGTCCTCTCCA 58.999 52.381 0.00 0.00 0.00 3.86
1372 3488 2.262603 CGTGCCTGCAGCTCTACA 59.737 61.111 8.66 0.00 44.23 2.74
1476 3592 1.687123 GCCTATAGGGACGTGTCACAT 59.313 52.381 20.58 0.00 34.87 3.21
1541 3657 2.231478 ACGACGAGTTCTTCATGATGGT 59.769 45.455 0.00 0.00 0.00 3.55
1636 3752 6.269307 TCTTCCCCTCCGTAATAAGATAAAGG 59.731 42.308 0.00 0.00 0.00 3.11
1638 3754 4.565028 CCCCTCCGTAATAAGATAAAGGCC 60.565 50.000 0.00 0.00 0.00 5.19
1647 3763 7.064728 CGTAATAAGATAAAGGCCCTATCAAGC 59.935 40.741 19.66 7.06 0.00 4.01
1675 3791 0.894141 TGCAATGGTGTATTGTGGGC 59.106 50.000 0.00 0.00 46.35 5.36
1696 3812 7.171678 GTGGGCTTATGAGTATTAGCTAAACTG 59.828 40.741 19.44 10.22 38.62 3.16
1762 3878 6.072838 CCATAGTTGGCATATCTAAGCACTTG 60.073 42.308 0.00 0.00 35.85 3.16
1778 3894 2.046313 ACTTGTACGTTTACAGACGCG 58.954 47.619 3.53 3.53 46.47 6.01
1788 3904 4.337060 CAGACGCGTCCGGACACA 62.337 66.667 34.08 0.00 39.22 3.72
1862 3978 4.261801 CCCGCACCTAAATCCATATAAGG 58.738 47.826 0.00 0.00 0.00 2.69
1865 3981 4.154195 CGCACCTAAATCCATATAAGGCAC 59.846 45.833 0.00 0.00 0.00 5.01
1949 4065 7.609918 AGATACACTCGAGCATAGATAGTTGAT 59.390 37.037 13.61 0.00 0.00 2.57
1955 4071 4.407818 GAGCATAGATAGTTGATCCGACG 58.592 47.826 0.00 0.00 34.80 5.12
1985 4101 7.845066 ATCGGACCTAAAATAGACAAAGTTC 57.155 36.000 0.00 0.00 0.00 3.01
1987 4103 6.647895 TCGGACCTAAAATAGACAAAGTTCAC 59.352 38.462 0.00 0.00 0.00 3.18
2069 4185 3.004946 GCCCTTGCCCTTGCCATT 61.005 61.111 0.00 0.00 36.33 3.16
2100 4216 2.818132 CAGCCGTCCATCTCCTCC 59.182 66.667 0.00 0.00 0.00 4.30
2112 4228 3.713615 CTCCTCCGTGTACGCGTCG 62.714 68.421 25.62 14.24 38.18 5.12
2146 4262 0.096976 GTTGTCATCATTGCCGTCCG 59.903 55.000 0.00 0.00 0.00 4.79
2174 4290 2.192861 TGCCGCTTTCCAACACAGG 61.193 57.895 0.00 0.00 0.00 4.00
2184 4300 6.058183 GCTTTCCAACACAGGTGAGATATAT 58.942 40.000 6.40 0.00 0.00 0.86
2185 4301 7.217200 GCTTTCCAACACAGGTGAGATATATA 58.783 38.462 6.40 0.00 0.00 0.86
2186 4302 7.880195 GCTTTCCAACACAGGTGAGATATATAT 59.120 37.037 6.40 0.00 0.00 0.86
2190 4306 7.124298 TCCAACACAGGTGAGATATATATAGCC 59.876 40.741 6.40 0.00 0.00 3.93
2191 4307 7.268586 CAACACAGGTGAGATATATATAGCCC 58.731 42.308 6.40 0.00 0.00 5.19
2192 4308 6.503041 ACACAGGTGAGATATATATAGCCCA 58.497 40.000 6.40 0.00 0.00 5.36
2193 4309 6.381420 ACACAGGTGAGATATATATAGCCCAC 59.619 42.308 12.72 12.72 0.00 4.61
2198 4314 7.343316 AGGTGAGATATATATAGCCCACAAGAC 59.657 40.741 20.05 6.72 0.00 3.01
2268 4384 2.485795 CGCTCTCCTTCTCCCTCGG 61.486 68.421 0.00 0.00 0.00 4.63
2270 4386 1.388837 GCTCTCCTTCTCCCTCGGAC 61.389 65.000 0.00 0.00 0.00 4.79
2316 4462 4.082523 CCACATGCCGGTCTCCGT 62.083 66.667 1.90 0.00 46.80 4.69
2317 4463 2.509336 CACATGCCGGTCTCCGTC 60.509 66.667 1.90 0.00 46.80 4.79
2464 6591 0.179184 GCGACCTTCGACTCTGACTC 60.179 60.000 0.00 0.00 43.74 3.36
2467 6594 0.250814 ACCTTCGACTCTGACTCCGT 60.251 55.000 0.00 0.00 0.00 4.69
2472 6599 0.805614 CGACTCTGACTCCGTCATGT 59.194 55.000 0.00 0.65 41.94 3.21
2473 6600 2.007608 CGACTCTGACTCCGTCATGTA 58.992 52.381 0.00 0.00 41.94 2.29
2484 6611 1.437625 CGTCATGTACATGTGCACCA 58.562 50.000 30.03 11.50 39.72 4.17
2491 6618 3.807538 CATGTGCACCAGAGCCGC 61.808 66.667 15.69 0.00 0.00 6.53
2540 6667 0.618968 GAGCCAGAGGAGAAGGGGAA 60.619 60.000 0.00 0.00 0.00 3.97
2605 6732 1.523154 GAGCCCGACCAACATTGCAA 61.523 55.000 0.00 0.00 0.00 4.08
2606 6733 0.899717 AGCCCGACCAACATTGCAAT 60.900 50.000 5.99 5.99 0.00 3.56
2609 6736 0.108709 CCGACCAACATTGCAATGGG 60.109 55.000 35.85 30.03 40.70 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.886124 GAGCTCGCGCCCTGTTAC 60.886 66.667 0.00 0.00 36.60 2.50
1 2 3.378602 TGAGCTCGCGCCCTGTTA 61.379 61.111 9.64 0.00 36.60 2.41
22 23 1.574428 GCTAAAGTGCCACCACGTG 59.426 57.895 9.08 9.08 46.62 4.49
23 24 1.959226 CGCTAAAGTGCCACCACGT 60.959 57.895 0.00 0.00 46.62 4.49
24 25 1.897398 GACGCTAAAGTGCCACCACG 61.897 60.000 0.00 0.00 46.62 4.94
25 26 1.866925 GACGCTAAAGTGCCACCAC 59.133 57.895 0.00 0.00 42.39 4.16
26 27 1.666553 CGACGCTAAAGTGCCACCA 60.667 57.895 0.00 0.00 0.00 4.17
27 28 2.388232 CCGACGCTAAAGTGCCACC 61.388 63.158 0.00 0.00 0.00 4.61
28 29 1.226030 AACCGACGCTAAAGTGCCAC 61.226 55.000 0.00 0.00 0.00 5.01
29 30 0.947180 GAACCGACGCTAAAGTGCCA 60.947 55.000 0.00 0.00 0.00 4.92
30 31 1.785951 GAACCGACGCTAAAGTGCC 59.214 57.895 0.00 0.00 0.00 5.01
31 32 1.280206 ACGAACCGACGCTAAAGTGC 61.280 55.000 0.00 0.00 36.70 4.40
32 33 0.433492 CACGAACCGACGCTAAAGTG 59.567 55.000 0.00 0.00 36.70 3.16
33 34 1.280206 GCACGAACCGACGCTAAAGT 61.280 55.000 0.00 0.00 36.70 2.66
34 35 1.414897 GCACGAACCGACGCTAAAG 59.585 57.895 0.00 0.00 36.70 1.85
35 36 2.023223 GGCACGAACCGACGCTAAA 61.023 57.895 0.00 0.00 36.70 1.85
36 37 2.431260 GGCACGAACCGACGCTAA 60.431 61.111 0.00 0.00 36.70 3.09
53 54 0.176449 CCCCCTTTAGTACCGGTTCG 59.824 60.000 15.04 0.00 0.00 3.95
88 89 9.149323 CGGTTCCATAATCGGCACTAATTAGTG 62.149 44.444 32.42 32.42 42.12 2.74
89 90 5.995897 GGTTCCATAATCGGCACTAATTAGT 59.004 40.000 12.50 12.50 36.90 2.24
90 91 5.120208 CGGTTCCATAATCGGCACTAATTAG 59.880 44.000 11.05 11.05 35.52 1.73
91 92 4.992319 CGGTTCCATAATCGGCACTAATTA 59.008 41.667 0.00 0.00 35.52 1.40
92 93 3.813166 CGGTTCCATAATCGGCACTAATT 59.187 43.478 0.00 0.00 35.52 1.40
93 94 3.399330 CGGTTCCATAATCGGCACTAAT 58.601 45.455 0.00 0.00 35.52 1.73
94 95 2.828877 CGGTTCCATAATCGGCACTAA 58.171 47.619 0.00 0.00 35.52 2.24
95 96 2.519377 CGGTTCCATAATCGGCACTA 57.481 50.000 0.00 0.00 35.52 2.74
96 97 3.379650 CGGTTCCATAATCGGCACT 57.620 52.632 0.00 0.00 35.52 4.40
101 102 2.519377 TAGTGCCGGTTCCATAATCG 57.481 50.000 1.90 0.00 38.99 3.34
102 103 3.564225 CCTTTAGTGCCGGTTCCATAATC 59.436 47.826 1.90 0.00 0.00 1.75
103 104 3.551846 CCTTTAGTGCCGGTTCCATAAT 58.448 45.455 1.90 0.00 0.00 1.28
104 105 2.942306 GCCTTTAGTGCCGGTTCCATAA 60.942 50.000 1.90 0.00 0.00 1.90
105 106 1.407712 GCCTTTAGTGCCGGTTCCATA 60.408 52.381 1.90 0.00 0.00 2.74
106 107 0.679960 GCCTTTAGTGCCGGTTCCAT 60.680 55.000 1.90 0.00 0.00 3.41
107 108 1.302993 GCCTTTAGTGCCGGTTCCA 60.303 57.895 1.90 0.00 0.00 3.53
108 109 2.044555 GGCCTTTAGTGCCGGTTCC 61.045 63.158 1.90 0.00 39.48 3.62
109 110 3.587095 GGCCTTTAGTGCCGGTTC 58.413 61.111 1.90 0.00 39.48 3.62
115 116 1.736126 GTTCGTAAGGGCCTTTAGTGC 59.264 52.381 26.29 8.97 38.47 4.40
116 117 2.353323 GGTTCGTAAGGGCCTTTAGTG 58.647 52.381 26.29 11.88 38.47 2.74
117 118 1.066645 CGGTTCGTAAGGGCCTTTAGT 60.067 52.381 26.29 1.50 38.47 2.24
118 119 1.648504 CGGTTCGTAAGGGCCTTTAG 58.351 55.000 26.29 18.30 38.47 1.85
119 120 0.249955 CCGGTTCGTAAGGGCCTTTA 59.750 55.000 26.29 2.60 38.47 1.85
120 121 1.002990 CCGGTTCGTAAGGGCCTTT 60.003 57.895 26.29 5.08 38.47 3.11
121 122 1.771783 AACCGGTTCGTAAGGGCCTT 61.772 55.000 24.44 24.44 38.47 4.35
122 123 1.771783 AAACCGGTTCGTAAGGGCCT 61.772 55.000 22.53 0.00 38.47 5.19
123 124 0.890542 AAAACCGGTTCGTAAGGGCC 60.891 55.000 22.53 0.00 38.47 5.80
124 125 1.807139 TAAAACCGGTTCGTAAGGGC 58.193 50.000 22.53 0.00 38.47 5.19
125 126 3.365264 GCTTTAAAACCGGTTCGTAAGGG 60.365 47.826 22.53 16.98 38.47 3.95
126 127 3.499537 AGCTTTAAAACCGGTTCGTAAGG 59.500 43.478 22.53 20.95 38.47 2.69
127 128 4.377738 GGAGCTTTAAAACCGGTTCGTAAG 60.378 45.833 22.53 21.96 0.00 2.34
128 129 3.498018 GGAGCTTTAAAACCGGTTCGTAA 59.502 43.478 22.53 18.41 0.00 3.18
129 130 3.066380 GGAGCTTTAAAACCGGTTCGTA 58.934 45.455 22.53 13.30 0.00 3.43
130 131 1.875514 GGAGCTTTAAAACCGGTTCGT 59.124 47.619 22.53 14.40 0.00 3.85
131 132 1.136169 CGGAGCTTTAAAACCGGTTCG 60.136 52.381 22.53 12.55 41.41 3.95
132 133 2.291465 AACGGAGCTTTAAAACCGGTTC 59.709 45.455 22.53 6.84 43.44 3.62
133 134 2.300433 AACGGAGCTTTAAAACCGGTT 58.700 42.857 15.86 15.86 43.44 4.44
137 138 6.309712 AGTAGAAAACGGAGCTTTAAAACC 57.690 37.500 0.00 0.00 0.00 3.27
138 139 8.008279 CACTAGTAGAAAACGGAGCTTTAAAAC 58.992 37.037 3.59 0.00 0.00 2.43
139 140 7.712205 ACACTAGTAGAAAACGGAGCTTTAAAA 59.288 33.333 3.59 0.00 0.00 1.52
140 141 7.212274 ACACTAGTAGAAAACGGAGCTTTAAA 58.788 34.615 3.59 0.00 0.00 1.52
141 142 6.752168 ACACTAGTAGAAAACGGAGCTTTAA 58.248 36.000 3.59 0.00 0.00 1.52
142 143 6.336842 ACACTAGTAGAAAACGGAGCTTTA 57.663 37.500 3.59 0.00 0.00 1.85
143 144 5.211174 ACACTAGTAGAAAACGGAGCTTT 57.789 39.130 3.59 0.00 0.00 3.51
144 145 4.868314 ACACTAGTAGAAAACGGAGCTT 57.132 40.909 3.59 0.00 0.00 3.74
145 146 4.280174 TGAACACTAGTAGAAAACGGAGCT 59.720 41.667 3.59 0.00 0.00 4.09
146 147 4.553323 TGAACACTAGTAGAAAACGGAGC 58.447 43.478 3.59 0.00 0.00 4.70
147 148 7.653767 ATTTGAACACTAGTAGAAAACGGAG 57.346 36.000 3.59 0.00 0.00 4.63
148 149 9.545105 TTTATTTGAACACTAGTAGAAAACGGA 57.455 29.630 3.59 0.00 0.00 4.69
381 1671 4.678509 AGTAAACATGCATGTGTAACGG 57.321 40.909 31.98 3.84 42.39 4.44
386 1676 5.475719 ACGTACTAGTAAACATGCATGTGT 58.524 37.500 31.98 28.55 41.61 3.72
390 1680 6.460676 GGGAGTACGTACTAGTAAACATGCAT 60.461 42.308 27.44 0.96 36.50 3.96
392 1682 5.067023 AGGGAGTACGTACTAGTAAACATGC 59.933 44.000 27.44 11.13 36.50 4.06
395 1685 5.351465 CGAAGGGAGTACGTACTAGTAAACA 59.649 44.000 27.44 0.00 36.50 2.83
399 1689 4.737855 ACGAAGGGAGTACGTACTAGTA 57.262 45.455 27.44 0.00 38.47 1.82
400 1690 3.618690 ACGAAGGGAGTACGTACTAGT 57.381 47.619 27.44 16.56 38.47 2.57
401 1691 4.954092 AAACGAAGGGAGTACGTACTAG 57.046 45.455 27.44 16.00 39.31 2.57
402 1692 6.811253 TTAAAACGAAGGGAGTACGTACTA 57.189 37.500 27.44 5.30 39.31 1.82
403 1693 5.705609 TTAAAACGAAGGGAGTACGTACT 57.294 39.130 27.71 27.71 39.31 2.73
404 1694 6.763303 TTTTAAAACGAAGGGAGTACGTAC 57.237 37.500 18.10 18.10 39.31 3.67
405 1695 8.519526 TCTATTTTAAAACGAAGGGAGTACGTA 58.480 33.333 1.97 0.00 39.31 3.57
406 1696 7.378181 TCTATTTTAAAACGAAGGGAGTACGT 58.622 34.615 1.97 0.00 41.97 3.57
407 1697 7.816945 TCTATTTTAAAACGAAGGGAGTACG 57.183 36.000 1.97 0.00 0.00 3.67
408 1698 9.374838 TCATCTATTTTAAAACGAAGGGAGTAC 57.625 33.333 1.97 0.00 0.00 2.73
409 1699 9.374838 GTCATCTATTTTAAAACGAAGGGAGTA 57.625 33.333 1.97 0.00 0.00 2.59
410 1700 8.101419 AGTCATCTATTTTAAAACGAAGGGAGT 58.899 33.333 1.97 3.92 0.00 3.85
411 1701 8.494016 AGTCATCTATTTTAAAACGAAGGGAG 57.506 34.615 1.97 0.00 0.00 4.30
412 1702 7.277098 CGAGTCATCTATTTTAAAACGAAGGGA 59.723 37.037 1.97 1.37 0.00 4.20
413 1703 7.277098 TCGAGTCATCTATTTTAAAACGAAGGG 59.723 37.037 1.97 0.00 0.00 3.95
414 1704 8.181487 TCGAGTCATCTATTTTAAAACGAAGG 57.819 34.615 1.97 1.41 0.00 3.46
458 1748 9.384764 GATGACCTAATTTTGTACTAGCTTTCT 57.615 33.333 0.00 0.00 0.00 2.52
459 1749 9.384764 AGATGACCTAATTTTGTACTAGCTTTC 57.615 33.333 0.00 0.00 0.00 2.62
472 1762 9.768215 TCCTTTCCAAAATAGATGACCTAATTT 57.232 29.630 0.00 0.00 32.23 1.82
473 1763 9.413734 CTCCTTTCCAAAATAGATGACCTAATT 57.586 33.333 0.00 0.00 0.00 1.40
474 1764 8.001292 CCTCCTTTCCAAAATAGATGACCTAAT 58.999 37.037 0.00 0.00 0.00 1.73
475 1765 7.183839 TCCTCCTTTCCAAAATAGATGACCTAA 59.816 37.037 0.00 0.00 0.00 2.69
476 1766 6.676632 TCCTCCTTTCCAAAATAGATGACCTA 59.323 38.462 0.00 0.00 0.00 3.08
477 1767 5.492524 TCCTCCTTTCCAAAATAGATGACCT 59.507 40.000 0.00 0.00 0.00 3.85
478 1768 5.755849 TCCTCCTTTCCAAAATAGATGACC 58.244 41.667 0.00 0.00 0.00 4.02
479 1769 7.703058 TTTCCTCCTTTCCAAAATAGATGAC 57.297 36.000 0.00 0.00 0.00 3.06
480 1770 9.408648 GTATTTCCTCCTTTCCAAAATAGATGA 57.591 33.333 0.00 0.00 0.00 2.92
481 1771 9.189156 TGTATTTCCTCCTTTCCAAAATAGATG 57.811 33.333 0.00 0.00 0.00 2.90
482 1772 9.768215 TTGTATTTCCTCCTTTCCAAAATAGAT 57.232 29.630 0.00 0.00 0.00 1.98
483 1773 9.594936 TTTGTATTTCCTCCTTTCCAAAATAGA 57.405 29.630 0.00 0.00 0.00 1.98
490 1780 9.540538 TGATTATTTTGTATTTCCTCCTTTCCA 57.459 29.630 0.00 0.00 0.00 3.53
493 1783 8.478066 GCCTGATTATTTTGTATTTCCTCCTTT 58.522 33.333 0.00 0.00 0.00 3.11
494 1784 7.619302 TGCCTGATTATTTTGTATTTCCTCCTT 59.381 33.333 0.00 0.00 0.00 3.36
495 1785 7.068716 GTGCCTGATTATTTTGTATTTCCTCCT 59.931 37.037 0.00 0.00 0.00 3.69
496 1786 7.147915 TGTGCCTGATTATTTTGTATTTCCTCC 60.148 37.037 0.00 0.00 0.00 4.30
497 1787 7.771183 TGTGCCTGATTATTTTGTATTTCCTC 58.229 34.615 0.00 0.00 0.00 3.71
498 1788 7.716799 TGTGCCTGATTATTTTGTATTTCCT 57.283 32.000 0.00 0.00 0.00 3.36
499 1789 8.196771 TCATGTGCCTGATTATTTTGTATTTCC 58.803 33.333 0.00 0.00 0.00 3.13
500 1790 9.241317 CTCATGTGCCTGATTATTTTGTATTTC 57.759 33.333 0.00 0.00 0.00 2.17
501 1791 8.199449 CCTCATGTGCCTGATTATTTTGTATTT 58.801 33.333 0.00 0.00 0.00 1.40
502 1792 7.685155 GCCTCATGTGCCTGATTATTTTGTATT 60.685 37.037 0.00 0.00 0.00 1.89
590 1967 4.621510 GCAGATCATACGCCATATCTCCAA 60.622 45.833 0.00 0.00 0.00 3.53
676 2702 6.093219 GGAGTAAAAAGAAACGGAGGGAATAC 59.907 42.308 0.00 0.00 0.00 1.89
677 2703 6.175471 GGAGTAAAAAGAAACGGAGGGAATA 58.825 40.000 0.00 0.00 0.00 1.75
678 2704 5.008331 GGAGTAAAAAGAAACGGAGGGAAT 58.992 41.667 0.00 0.00 0.00 3.01
679 2705 4.392047 GGAGTAAAAAGAAACGGAGGGAA 58.608 43.478 0.00 0.00 0.00 3.97
680 2706 3.555586 CGGAGTAAAAAGAAACGGAGGGA 60.556 47.826 0.00 0.00 0.00 4.20
681 2707 2.740447 CGGAGTAAAAAGAAACGGAGGG 59.260 50.000 0.00 0.00 0.00 4.30
682 2708 2.159037 GCGGAGTAAAAAGAAACGGAGG 59.841 50.000 0.00 0.00 0.00 4.30
683 2709 2.803956 TGCGGAGTAAAAAGAAACGGAG 59.196 45.455 0.00 0.00 0.00 4.63
684 2710 2.836262 TGCGGAGTAAAAAGAAACGGA 58.164 42.857 0.00 0.00 0.00 4.69
685 2711 3.824414 ATGCGGAGTAAAAAGAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
686 2712 8.883789 TTTTATATGCGGAGTAAAAAGAAACG 57.116 30.769 7.31 0.00 0.00 3.60
690 2716 9.796120 CCAAATTTTATATGCGGAGTAAAAAGA 57.204 29.630 11.91 0.00 32.84 2.52
691 2717 9.581099 ACCAAATTTTATATGCGGAGTAAAAAG 57.419 29.630 11.91 7.15 32.84 2.27
692 2718 9.575783 GACCAAATTTTATATGCGGAGTAAAAA 57.424 29.630 11.91 5.26 32.84 1.94
693 2719 8.740906 TGACCAAATTTTATATGCGGAGTAAAA 58.259 29.630 10.79 10.79 33.41 1.52
694 2720 8.282455 TGACCAAATTTTATATGCGGAGTAAA 57.718 30.769 0.00 0.00 0.00 2.01
695 2721 7.867305 TGACCAAATTTTATATGCGGAGTAA 57.133 32.000 0.00 0.00 0.00 2.24
696 2722 7.867305 TTGACCAAATTTTATATGCGGAGTA 57.133 32.000 0.00 0.00 0.00 2.59
697 2723 6.767524 TTGACCAAATTTTATATGCGGAGT 57.232 33.333 0.00 0.00 0.00 3.85
698 2724 7.257722 ACTTTGACCAAATTTTATATGCGGAG 58.742 34.615 0.00 0.00 0.00 4.63
699 2725 7.094162 TGACTTTGACCAAATTTTATATGCGGA 60.094 33.333 0.00 0.00 0.00 5.54
700 2726 7.032580 TGACTTTGACCAAATTTTATATGCGG 58.967 34.615 0.00 0.00 0.00 5.69
701 2727 8.459521 TTGACTTTGACCAAATTTTATATGCG 57.540 30.769 0.00 0.00 0.00 4.73
705 2731 9.255304 GCAGTTTGACTTTGACCAAATTTTATA 57.745 29.630 0.00 0.00 35.14 0.98
706 2732 7.768120 TGCAGTTTGACTTTGACCAAATTTTAT 59.232 29.630 0.00 0.00 35.14 1.40
707 2733 7.064016 GTGCAGTTTGACTTTGACCAAATTTTA 59.936 33.333 0.00 0.00 35.14 1.52
708 2734 5.936956 TGCAGTTTGACTTTGACCAAATTTT 59.063 32.000 0.00 0.00 35.14 1.82
709 2735 5.351189 GTGCAGTTTGACTTTGACCAAATTT 59.649 36.000 0.00 0.00 35.14 1.82
710 2736 4.869861 GTGCAGTTTGACTTTGACCAAATT 59.130 37.500 0.00 0.00 35.14 1.82
711 2737 4.081752 TGTGCAGTTTGACTTTGACCAAAT 60.082 37.500 0.00 0.00 35.14 2.32
712 2738 3.256879 TGTGCAGTTTGACTTTGACCAAA 59.743 39.130 0.00 0.00 0.00 3.28
713 2739 2.822561 TGTGCAGTTTGACTTTGACCAA 59.177 40.909 0.00 0.00 0.00 3.67
714 2740 2.441410 TGTGCAGTTTGACTTTGACCA 58.559 42.857 0.00 0.00 0.00 4.02
715 2741 3.502191 TTGTGCAGTTTGACTTTGACC 57.498 42.857 0.00 0.00 0.00 4.02
716 2742 4.485163 ACTTTGTGCAGTTTGACTTTGAC 58.515 39.130 0.00 0.00 0.00 3.18
717 2743 4.782019 ACTTTGTGCAGTTTGACTTTGA 57.218 36.364 0.00 0.00 0.00 2.69
718 2744 5.844301 AAACTTTGTGCAGTTTGACTTTG 57.156 34.783 1.37 0.00 43.88 2.77
725 2751 3.951775 TGGTCAAACTTTGTGCAGTTT 57.048 38.095 1.44 0.00 46.00 2.66
726 2752 3.951775 TTGGTCAAACTTTGTGCAGTT 57.048 38.095 1.44 0.00 38.74 3.16
727 2753 3.951775 TTTGGTCAAACTTTGTGCAGT 57.048 38.095 1.44 0.00 0.00 4.40
728 2754 5.799681 AAATTTGGTCAAACTTTGTGCAG 57.200 34.783 1.44 0.00 32.51 4.41
790 2816 9.110502 TGCACCATAAAACGTATGTTCATATTA 57.889 29.630 0.00 0.00 37.31 0.98
791 2817 7.990917 TGCACCATAAAACGTATGTTCATATT 58.009 30.769 0.00 0.00 37.31 1.28
792 2818 7.561021 TGCACCATAAAACGTATGTTCATAT 57.439 32.000 0.00 1.08 37.31 1.78
793 2819 6.986904 TGCACCATAAAACGTATGTTCATA 57.013 33.333 0.00 0.00 37.31 2.15
794 2820 5.888691 TGCACCATAAAACGTATGTTCAT 57.111 34.783 0.00 0.00 37.31 2.57
795 2821 5.645929 AGATGCACCATAAAACGTATGTTCA 59.354 36.000 0.00 0.00 37.31 3.18
796 2822 5.965334 CAGATGCACCATAAAACGTATGTTC 59.035 40.000 0.00 0.00 37.31 3.18
797 2823 5.645929 TCAGATGCACCATAAAACGTATGTT 59.354 36.000 0.00 0.00 40.98 2.71
798 2824 5.182487 TCAGATGCACCATAAAACGTATGT 58.818 37.500 0.00 0.00 0.00 2.29
799 2825 5.733226 TCAGATGCACCATAAAACGTATG 57.267 39.130 0.00 0.00 0.00 2.39
800 2826 8.621532 ATTATCAGATGCACCATAAAACGTAT 57.378 30.769 0.00 0.00 0.00 3.06
801 2827 9.719355 ATATTATCAGATGCACCATAAAACGTA 57.281 29.630 0.00 0.00 0.00 3.57
802 2828 6.942532 ATTATCAGATGCACCATAAAACGT 57.057 33.333 0.00 0.00 0.00 3.99
803 2829 9.333497 CAATATTATCAGATGCACCATAAAACG 57.667 33.333 0.00 0.00 0.00 3.60
809 2835 9.304335 TGAAATCAATATTATCAGATGCACCAT 57.696 29.630 0.00 0.00 0.00 3.55
810 2836 8.694581 TGAAATCAATATTATCAGATGCACCA 57.305 30.769 0.00 0.00 0.00 4.17
867 2893 9.726438 AGTCAAGCTTAATAGTGTTTGACTAAT 57.274 29.630 18.50 1.86 40.67 1.73
868 2894 9.555727 AAGTCAAGCTTAATAGTGTTTGACTAA 57.444 29.630 19.63 0.00 36.85 2.24
869 2895 9.555727 AAAGTCAAGCTTAATAGTGTTTGACTA 57.444 29.630 19.63 0.00 37.76 2.59
870 2896 8.345565 CAAAGTCAAGCTTAATAGTGTTTGACT 58.654 33.333 15.69 15.69 36.17 3.41
871 2897 8.342634 TCAAAGTCAAGCTTAATAGTGTTTGAC 58.657 33.333 0.00 12.45 36.17 3.18
872 2898 8.342634 GTCAAAGTCAAGCTTAATAGTGTTTGA 58.657 33.333 0.00 5.56 36.17 2.69
873 2899 7.591426 GGTCAAAGTCAAGCTTAATAGTGTTTG 59.409 37.037 0.00 3.33 36.17 2.93
874 2900 7.284489 TGGTCAAAGTCAAGCTTAATAGTGTTT 59.716 33.333 0.00 0.00 36.17 2.83
875 2901 6.770785 TGGTCAAAGTCAAGCTTAATAGTGTT 59.229 34.615 0.00 0.00 36.17 3.32
876 2902 6.296026 TGGTCAAAGTCAAGCTTAATAGTGT 58.704 36.000 0.00 0.00 36.17 3.55
877 2903 6.801539 TGGTCAAAGTCAAGCTTAATAGTG 57.198 37.500 0.00 0.00 36.17 2.74
878 2904 7.255486 GGTTTGGTCAAAGTCAAGCTTAATAGT 60.255 37.037 0.00 0.00 36.17 2.12
879 2905 7.040409 AGGTTTGGTCAAAGTCAAGCTTAATAG 60.040 37.037 0.00 0.00 36.17 1.73
880 2906 6.775629 AGGTTTGGTCAAAGTCAAGCTTAATA 59.224 34.615 0.00 0.00 36.17 0.98
881 2907 5.598417 AGGTTTGGTCAAAGTCAAGCTTAAT 59.402 36.000 0.00 0.00 36.17 1.40
882 2908 4.953579 AGGTTTGGTCAAAGTCAAGCTTAA 59.046 37.500 0.00 0.00 36.17 1.85
883 2909 4.532834 AGGTTTGGTCAAAGTCAAGCTTA 58.467 39.130 0.00 0.00 36.17 3.09
884 2910 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
885 2911 2.952310 GAGGTTTGGTCAAAGTCAAGCT 59.048 45.455 0.00 0.00 0.00 3.74
886 2912 2.687935 TGAGGTTTGGTCAAAGTCAAGC 59.312 45.455 0.00 0.00 0.00 4.01
887 2913 6.824305 ATATGAGGTTTGGTCAAAGTCAAG 57.176 37.500 10.56 0.00 31.87 3.02
888 2914 6.370442 CGTATATGAGGTTTGGTCAAAGTCAA 59.630 38.462 10.56 0.00 31.87 3.18
889 2915 5.872617 CGTATATGAGGTTTGGTCAAAGTCA 59.127 40.000 9.49 9.49 32.34 3.41
890 2916 5.293569 CCGTATATGAGGTTTGGTCAAAGTC 59.706 44.000 0.00 0.00 0.00 3.01
891 2917 5.046159 TCCGTATATGAGGTTTGGTCAAAGT 60.046 40.000 0.00 0.00 0.00 2.66
892 2918 5.293569 GTCCGTATATGAGGTTTGGTCAAAG 59.706 44.000 0.00 0.00 0.00 2.77
893 2919 5.046159 AGTCCGTATATGAGGTTTGGTCAAA 60.046 40.000 0.00 0.00 0.00 2.69
894 2920 4.468510 AGTCCGTATATGAGGTTTGGTCAA 59.531 41.667 0.00 0.00 0.00 3.18
895 2921 4.028131 AGTCCGTATATGAGGTTTGGTCA 58.972 43.478 0.00 0.00 0.00 4.02
896 2922 4.667519 AGTCCGTATATGAGGTTTGGTC 57.332 45.455 0.00 0.00 0.00 4.02
897 2923 6.549433 TTTAGTCCGTATATGAGGTTTGGT 57.451 37.500 0.00 0.00 0.00 3.67
898 2924 7.767198 TCTTTTTAGTCCGTATATGAGGTTTGG 59.233 37.037 0.00 0.00 0.00 3.28
899 2925 8.712285 TCTTTTTAGTCCGTATATGAGGTTTG 57.288 34.615 0.00 0.00 0.00 2.93
902 2928 9.584008 TCTATCTTTTTAGTCCGTATATGAGGT 57.416 33.333 0.00 0.00 0.00 3.85
907 2933 9.245481 CCCTCTCTATCTTTTTAGTCCGTATAT 57.755 37.037 0.00 0.00 0.00 0.86
908 2934 8.443176 TCCCTCTCTATCTTTTTAGTCCGTATA 58.557 37.037 0.00 0.00 0.00 1.47
909 2935 7.296098 TCCCTCTCTATCTTTTTAGTCCGTAT 58.704 38.462 0.00 0.00 0.00 3.06
910 2936 6.666678 TCCCTCTCTATCTTTTTAGTCCGTA 58.333 40.000 0.00 0.00 0.00 4.02
911 2937 5.516984 TCCCTCTCTATCTTTTTAGTCCGT 58.483 41.667 0.00 0.00 0.00 4.69
912 2938 5.595133 ACTCCCTCTCTATCTTTTTAGTCCG 59.405 44.000 0.00 0.00 0.00 4.79
913 2939 8.581578 CATACTCCCTCTCTATCTTTTTAGTCC 58.418 40.741 0.00 0.00 0.00 3.85
914 2940 8.581578 CCATACTCCCTCTCTATCTTTTTAGTC 58.418 40.741 0.00 0.00 0.00 2.59
915 2941 8.290277 TCCATACTCCCTCTCTATCTTTTTAGT 58.710 37.037 0.00 0.00 0.00 2.24
916 2942 8.713708 TCCATACTCCCTCTCTATCTTTTTAG 57.286 38.462 0.00 0.00 0.00 1.85
917 2943 9.676129 AATCCATACTCCCTCTCTATCTTTTTA 57.324 33.333 0.00 0.00 0.00 1.52
918 2944 8.574309 AATCCATACTCCCTCTCTATCTTTTT 57.426 34.615 0.00 0.00 0.00 1.94
919 2945 8.574309 AAATCCATACTCCCTCTCTATCTTTT 57.426 34.615 0.00 0.00 0.00 2.27
920 2946 9.676129 TTAAATCCATACTCCCTCTCTATCTTT 57.324 33.333 0.00 0.00 0.00 2.52
921 2947 9.851267 ATTAAATCCATACTCCCTCTCTATCTT 57.149 33.333 0.00 0.00 0.00 2.40
922 2948 9.265862 CATTAAATCCATACTCCCTCTCTATCT 57.734 37.037 0.00 0.00 0.00 1.98
923 2949 7.984617 GCATTAAATCCATACTCCCTCTCTATC 59.015 40.741 0.00 0.00 0.00 2.08
924 2950 7.682028 AGCATTAAATCCATACTCCCTCTCTAT 59.318 37.037 0.00 0.00 0.00 1.98
925 2951 7.019388 AGCATTAAATCCATACTCCCTCTCTA 58.981 38.462 0.00 0.00 0.00 2.43
926 2952 5.848921 AGCATTAAATCCATACTCCCTCTCT 59.151 40.000 0.00 0.00 0.00 3.10
927 2953 5.936956 CAGCATTAAATCCATACTCCCTCTC 59.063 44.000 0.00 0.00 0.00 3.20
928 2954 5.222007 CCAGCATTAAATCCATACTCCCTCT 60.222 44.000 0.00 0.00 0.00 3.69
929 2955 5.006386 CCAGCATTAAATCCATACTCCCTC 58.994 45.833 0.00 0.00 0.00 4.30
930 2956 4.665009 TCCAGCATTAAATCCATACTCCCT 59.335 41.667 0.00 0.00 0.00 4.20
931 2957 4.985538 TCCAGCATTAAATCCATACTCCC 58.014 43.478 0.00 0.00 0.00 4.30
932 2958 7.530426 AAATCCAGCATTAAATCCATACTCC 57.470 36.000 0.00 0.00 0.00 3.85
1106 3172 1.289530 AGGACAAGTAGGAGGAGGAGG 59.710 57.143 0.00 0.00 0.00 4.30
1131 3197 1.305219 CCGTGAACATCAATGGCCGT 61.305 55.000 0.00 0.00 0.00 5.68
1176 3242 2.355363 CTCGTCCAACGGCGAACA 60.355 61.111 16.62 0.00 42.81 3.18
1181 3247 2.811317 CAGAGCTCGTCCAACGGC 60.811 66.667 8.37 2.69 42.81 5.68
1185 3251 1.153765 CGATGCAGAGCTCGTCCAA 60.154 57.895 8.37 0.00 0.00 3.53
1558 3674 2.413351 CTGCACCCGATCGACGAT 59.587 61.111 18.66 10.78 45.77 3.73
1622 3738 7.337184 GGCTTGATAGGGCCTTTATCTTATTAC 59.663 40.741 13.45 0.00 44.48 1.89
1636 3752 3.406764 CATGTTAGAGGCTTGATAGGGC 58.593 50.000 0.00 0.00 0.00 5.19
1638 3754 4.077300 TGCATGTTAGAGGCTTGATAGG 57.923 45.455 0.00 0.00 30.62 2.57
1647 3763 5.357878 ACAATACACCATTGCATGTTAGAGG 59.642 40.000 0.00 0.00 46.85 3.69
1663 3779 7.095187 GCTAATACTCATAAGCCCACAATACAC 60.095 40.741 0.00 0.00 0.00 2.90
1675 3791 8.959058 CACGACAGTTTAGCTAATACTCATAAG 58.041 37.037 7.08 4.78 0.00 1.73
1696 3812 5.786401 AAGAGATGAATAAACAGCACGAC 57.214 39.130 0.00 0.00 0.00 4.34
1762 3878 0.977674 GGACGCGTCTGTAAACGTAC 59.022 55.000 35.50 13.58 44.38 3.67
1778 3894 2.357517 CAGCAGGTGTGTCCGGAC 60.358 66.667 28.17 28.17 41.99 4.79
1788 3904 1.452651 CCGATCAATGCCAGCAGGT 60.453 57.895 0.00 0.00 37.19 4.00
1862 3978 0.519175 CGTCTTACATTGCTGCGTGC 60.519 55.000 4.97 0.00 43.25 5.34
1865 3981 1.459209 TCAACGTCTTACATTGCTGCG 59.541 47.619 0.00 0.00 0.00 5.18
1878 3994 6.910433 ACTTGTTTGTGATGTTAATCAACGTC 59.090 34.615 0.00 0.00 44.40 4.34
1926 4042 6.149640 GGATCAACTATCTATGCTCGAGTGTA 59.850 42.308 15.13 6.52 34.75 2.90
1928 4044 5.398169 GGATCAACTATCTATGCTCGAGTG 58.602 45.833 15.13 0.00 34.75 3.51
1930 4046 4.393371 TCGGATCAACTATCTATGCTCGAG 59.607 45.833 8.45 8.45 34.75 4.04
1955 4071 6.110707 TGTCTATTTTAGGTCCGATTTGTCC 58.889 40.000 0.00 0.00 0.00 4.02
2022 4138 0.617413 AGTGGTGATCTTGCCCTCTG 59.383 55.000 0.00 0.00 0.00 3.35
2061 4177 1.798725 CGCAGAACGCAATGGCAAG 60.799 57.895 0.00 0.00 42.60 4.01
2084 4200 2.835431 CGGAGGAGATGGACGGCT 60.835 66.667 0.00 0.00 0.00 5.52
2112 4228 3.782443 AACGATCCTCCCGCCACC 61.782 66.667 0.00 0.00 0.00 4.61
2128 4244 0.036858 TCGGACGGCAATGATGACAA 60.037 50.000 0.00 0.00 32.33 3.18
2146 4262 1.648467 GAAAGCGGCACCACCAGATC 61.648 60.000 1.45 0.00 39.03 2.75
2174 4290 7.197017 CGTCTTGTGGGCTATATATATCTCAC 58.803 42.308 16.45 16.45 0.00 3.51
2190 4306 2.819595 CCATCCGCCGTCTTGTGG 60.820 66.667 0.00 0.00 37.24 4.17
2191 4307 3.499737 GCCATCCGCCGTCTTGTG 61.500 66.667 0.00 0.00 0.00 3.33
2444 6571 1.153997 GTCAGAGTCGAAGGTCGCC 60.154 63.158 0.00 0.00 40.21 5.54
2448 6575 0.250814 ACGGAGTCAGAGTCGAAGGT 60.251 55.000 0.00 0.00 29.74 3.50
2464 6591 0.726827 GGTGCACATGTACATGACGG 59.273 55.000 36.36 25.45 41.20 4.79
2467 6594 2.936553 GCTCTGGTGCACATGTACATGA 60.937 50.000 36.36 16.13 41.20 3.07
2472 6599 1.079197 CGGCTCTGGTGCACATGTA 60.079 57.895 20.43 0.51 34.04 2.29
2473 6600 2.359107 CGGCTCTGGTGCACATGT 60.359 61.111 20.43 0.00 34.04 3.21
2512 6639 4.463879 CTCTGGCTCCAGCACCGG 62.464 72.222 10.99 0.00 43.31 5.28
2519 6646 1.306482 CCCTTCTCCTCTGGCTCCA 60.306 63.158 0.00 0.00 0.00 3.86
2551 6678 0.980231 GCCCACTCCAGATCCAGAGT 60.980 60.000 8.99 8.99 44.12 3.24
2554 6681 1.997311 TGGCCCACTCCAGATCCAG 60.997 63.158 0.00 0.00 0.00 3.86
2605 6732 1.152440 CTCCTCTAGGTCGCCCCAT 60.152 63.158 0.00 0.00 36.34 4.00
2606 6733 2.279073 CTCCTCTAGGTCGCCCCA 59.721 66.667 0.00 0.00 36.34 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.