Multiple sequence alignment - TraesCS1A01G382900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G382900 chr1A 100.000 4054 0 0 1 4054 553703773 553707826 0.000000e+00 7487
1 TraesCS1A01G382900 chr1A 98.876 89 1 0 3622 3710 441953863 441953951 4.190000e-35 159
2 TraesCS1A01G382900 chr1B 92.402 2948 138 37 984 3871 636262249 636265170 0.000000e+00 4124
3 TraesCS1A01G382900 chr1B 83.491 636 44 34 346 954 636261582 636262183 1.660000e-148 536
4 TraesCS1A01G382900 chr1B 82.456 228 34 4 3214 3438 636304108 636304332 1.150000e-45 195
5 TraesCS1A01G382900 chr1B 81.868 182 18 6 3876 4049 636267524 636267698 5.460000e-29 139
6 TraesCS1A01G382900 chr1B 87.705 122 8 6 3595 3710 636752842 636752962 7.070000e-28 135
7 TraesCS1A01G382900 chr1D 92.567 1991 70 31 266 2231 462050686 462052623 0.000000e+00 2785
8 TraesCS1A01G382900 chr1D 94.092 1388 52 12 2274 3632 462052696 462054082 0.000000e+00 2082
9 TraesCS1A01G382900 chr1D 89.178 499 34 10 3563 4051 462054093 462054581 4.480000e-169 604
10 TraesCS1A01G382900 chr1D 97.727 88 1 1 3626 3712 37213433 37213520 2.520000e-32 150
11 TraesCS1A01G382900 chr5D 98.824 85 0 1 3627 3710 446400725 446400809 2.520000e-32 150
12 TraesCS1A01G382900 chr3D 97.727 88 0 2 3623 3710 3302157 3302242 2.520000e-32 150
13 TraesCS1A01G382900 chr3D 98.780 82 0 1 3626 3706 368957464 368957545 1.170000e-30 145
14 TraesCS1A01G382900 chr5A 95.556 90 4 0 3616 3705 344545877 344545788 1.170000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G382900 chr1A 553703773 553707826 4053 False 7487.000000 7487 100.000000 1 4054 1 chr1A.!!$F2 4053
1 TraesCS1A01G382900 chr1B 636261582 636267698 6116 False 1599.666667 4124 85.920333 346 4049 3 chr1B.!!$F3 3703
2 TraesCS1A01G382900 chr1D 462050686 462054581 3895 False 1823.666667 2785 91.945667 266 4051 3 chr1D.!!$F2 3785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.179045 ATACGAGGGTGCCAATCAGC 60.179 55.0 0.0 0.0 42.24 4.26 F
1578 1674 0.321346 TGCTGCTCAAGTTCATCGGA 59.679 50.0 0.0 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1891 1987 1.538047 GGCTTGTGCAGAGGAATCAA 58.462 50.0 0.00 0.00 41.91 2.57 R
3057 3240 0.529119 GATTATCGCCGACGGTTGGT 60.529 55.0 16.73 7.52 40.63 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.523168 TGAGCAGTCCGTGTGGGA 60.523 61.111 0.00 0.00 44.68 4.37
25 26 2.115510 TCCGTGTGGGATCTCATCG 58.884 57.895 13.70 13.70 40.94 3.84
26 27 0.683179 TCCGTGTGGGATCTCATCGT 60.683 55.000 17.43 0.00 40.94 3.73
27 28 0.249073 CCGTGTGGGATCTCATCGTC 60.249 60.000 17.43 0.00 38.47 4.20
28 29 0.455815 CGTGTGGGATCTCATCGTCA 59.544 55.000 0.00 0.00 0.00 4.35
29 30 1.534805 CGTGTGGGATCTCATCGTCAG 60.535 57.143 0.00 0.00 0.00 3.51
30 31 1.478510 GTGTGGGATCTCATCGTCAGT 59.521 52.381 0.00 0.00 0.00 3.41
31 32 2.688446 GTGTGGGATCTCATCGTCAGTA 59.312 50.000 0.00 0.00 0.00 2.74
32 33 2.688446 TGTGGGATCTCATCGTCAGTAC 59.312 50.000 0.00 0.00 0.00 2.73
33 34 2.952978 GTGGGATCTCATCGTCAGTACT 59.047 50.000 0.00 0.00 0.00 2.73
34 35 4.135306 GTGGGATCTCATCGTCAGTACTA 58.865 47.826 0.00 0.00 0.00 1.82
35 36 4.023878 GTGGGATCTCATCGTCAGTACTAC 60.024 50.000 0.00 0.00 0.00 2.73
36 37 3.186817 GGGATCTCATCGTCAGTACTACG 59.813 52.174 14.74 14.74 41.64 3.51
37 38 3.808726 GGATCTCATCGTCAGTACTACGT 59.191 47.826 18.11 0.00 41.08 3.57
38 39 4.318903 GGATCTCATCGTCAGTACTACGTG 60.319 50.000 18.11 15.81 41.08 4.49
39 40 2.934553 TCTCATCGTCAGTACTACGTGG 59.065 50.000 18.11 0.00 41.08 4.94
40 41 1.399440 TCATCGTCAGTACTACGTGGC 59.601 52.381 18.11 0.75 41.08 5.01
41 42 0.376152 ATCGTCAGTACTACGTGGCG 59.624 55.000 18.11 11.20 43.13 5.69
42 43 1.226211 CGTCAGTACTACGTGGCGG 60.226 63.158 0.00 0.00 38.13 6.13
43 44 1.638388 CGTCAGTACTACGTGGCGGA 61.638 60.000 0.00 0.00 38.13 5.54
44 45 0.737219 GTCAGTACTACGTGGCGGAT 59.263 55.000 0.00 0.00 0.00 4.18
45 46 0.736636 TCAGTACTACGTGGCGGATG 59.263 55.000 0.00 0.00 0.00 3.51
46 47 0.870307 CAGTACTACGTGGCGGATGC 60.870 60.000 0.00 0.00 41.71 3.91
47 48 1.942712 GTACTACGTGGCGGATGCG 60.943 63.158 0.65 0.65 44.10 4.73
48 49 3.761445 TACTACGTGGCGGATGCGC 62.761 63.158 24.55 24.55 44.10 6.09
58 59 3.861263 GGATGCGCCCGAACGTTC 61.861 66.667 18.47 18.47 34.88 3.95
59 60 3.861263 GATGCGCCCGAACGTTCC 61.861 66.667 22.07 8.50 34.88 3.62
60 61 4.690719 ATGCGCCCGAACGTTCCA 62.691 61.111 22.07 13.88 34.88 3.53
61 62 3.969250 ATGCGCCCGAACGTTCCAT 62.969 57.895 22.07 15.46 34.88 3.41
62 63 2.509786 GCGCCCGAACGTTCCATA 60.510 61.111 22.07 0.00 34.88 2.74
63 64 1.885850 GCGCCCGAACGTTCCATAT 60.886 57.895 22.07 0.00 34.88 1.78
64 65 1.828331 GCGCCCGAACGTTCCATATC 61.828 60.000 22.07 5.82 34.88 1.63
65 66 1.219522 CGCCCGAACGTTCCATATCC 61.220 60.000 22.07 4.65 0.00 2.59
66 67 0.883370 GCCCGAACGTTCCATATCCC 60.883 60.000 22.07 0.00 0.00 3.85
67 68 0.250166 CCCGAACGTTCCATATCCCC 60.250 60.000 22.07 0.00 0.00 4.81
68 69 0.756903 CCGAACGTTCCATATCCCCT 59.243 55.000 22.07 0.00 0.00 4.79
69 70 1.270147 CCGAACGTTCCATATCCCCTC 60.270 57.143 22.07 0.00 0.00 4.30
70 71 1.411246 CGAACGTTCCATATCCCCTCA 59.589 52.381 22.07 0.00 0.00 3.86
71 72 2.037251 CGAACGTTCCATATCCCCTCAT 59.963 50.000 22.07 0.00 0.00 2.90
72 73 3.257375 CGAACGTTCCATATCCCCTCATA 59.743 47.826 22.07 0.00 0.00 2.15
73 74 4.081642 CGAACGTTCCATATCCCCTCATAT 60.082 45.833 22.07 0.00 0.00 1.78
74 75 5.568825 CGAACGTTCCATATCCCCTCATATT 60.569 44.000 22.07 0.00 0.00 1.28
75 76 5.843019 ACGTTCCATATCCCCTCATATTT 57.157 39.130 0.00 0.00 0.00 1.40
76 77 6.945636 ACGTTCCATATCCCCTCATATTTA 57.054 37.500 0.00 0.00 0.00 1.40
77 78 6.947464 ACGTTCCATATCCCCTCATATTTAG 58.053 40.000 0.00 0.00 0.00 1.85
78 79 6.070194 ACGTTCCATATCCCCTCATATTTAGG 60.070 42.308 0.00 0.00 0.00 2.69
79 80 5.975988 TCCATATCCCCTCATATTTAGGC 57.024 43.478 0.00 0.00 32.34 3.93
80 81 5.613826 TCCATATCCCCTCATATTTAGGCT 58.386 41.667 0.00 0.00 32.34 4.58
81 82 5.429762 TCCATATCCCCTCATATTTAGGCTG 59.570 44.000 0.00 0.00 32.34 4.85
82 83 5.429762 CCATATCCCCTCATATTTAGGCTGA 59.570 44.000 0.00 0.00 32.34 4.26
83 84 6.069440 CCATATCCCCTCATATTTAGGCTGAA 60.069 42.308 0.00 0.00 32.34 3.02
84 85 7.367186 CCATATCCCCTCATATTTAGGCTGAAT 60.367 40.741 9.61 9.61 32.34 2.57
85 86 8.717717 CATATCCCCTCATATTTAGGCTGAATA 58.282 37.037 13.33 13.33 32.34 1.75
86 87 6.374417 TCCCCTCATATTTAGGCTGAATAC 57.626 41.667 13.25 0.00 32.34 1.89
87 88 5.046591 TCCCCTCATATTTAGGCTGAATACG 60.047 44.000 13.25 6.34 32.34 3.06
88 89 5.046591 CCCCTCATATTTAGGCTGAATACGA 60.047 44.000 13.25 10.19 32.34 3.43
89 90 6.102663 CCCTCATATTTAGGCTGAATACGAG 58.897 44.000 21.40 21.40 32.16 4.18
90 91 6.102663 CCTCATATTTAGGCTGAATACGAGG 58.897 44.000 28.37 28.37 40.74 4.63
91 92 6.037786 TCATATTTAGGCTGAATACGAGGG 57.962 41.667 13.25 3.04 0.00 4.30
92 93 5.542635 TCATATTTAGGCTGAATACGAGGGT 59.457 40.000 13.25 0.00 0.00 4.34
93 94 3.536956 TTTAGGCTGAATACGAGGGTG 57.463 47.619 0.00 0.00 0.00 4.61
94 95 0.750850 TAGGCTGAATACGAGGGTGC 59.249 55.000 0.00 0.00 0.00 5.01
95 96 1.523938 GGCTGAATACGAGGGTGCC 60.524 63.158 0.00 0.00 0.00 5.01
96 97 1.220749 GCTGAATACGAGGGTGCCA 59.779 57.895 0.00 0.00 0.00 4.92
97 98 0.392461 GCTGAATACGAGGGTGCCAA 60.392 55.000 0.00 0.00 0.00 4.52
98 99 1.747206 GCTGAATACGAGGGTGCCAAT 60.747 52.381 0.00 0.00 0.00 3.16
99 100 2.213499 CTGAATACGAGGGTGCCAATC 58.787 52.381 0.00 0.00 0.00 2.67
100 101 1.557371 TGAATACGAGGGTGCCAATCA 59.443 47.619 0.00 0.00 0.00 2.57
101 102 2.213499 GAATACGAGGGTGCCAATCAG 58.787 52.381 0.00 0.00 0.00 2.90
102 103 0.179045 ATACGAGGGTGCCAATCAGC 60.179 55.000 0.00 0.00 42.24 4.26
107 108 4.421365 GGTGCCAATCAGCCAAGA 57.579 55.556 0.00 0.00 37.22 3.02
108 109 2.657297 GGTGCCAATCAGCCAAGAA 58.343 52.632 0.00 0.00 37.22 2.52
109 110 0.529378 GGTGCCAATCAGCCAAGAAG 59.471 55.000 0.00 0.00 37.22 2.85
110 111 1.251251 GTGCCAATCAGCCAAGAAGT 58.749 50.000 0.00 0.00 0.00 3.01
111 112 1.615392 GTGCCAATCAGCCAAGAAGTT 59.385 47.619 0.00 0.00 0.00 2.66
112 113 2.036346 GTGCCAATCAGCCAAGAAGTTT 59.964 45.455 0.00 0.00 0.00 2.66
113 114 3.255642 GTGCCAATCAGCCAAGAAGTTTA 59.744 43.478 0.00 0.00 0.00 2.01
114 115 3.255642 TGCCAATCAGCCAAGAAGTTTAC 59.744 43.478 0.00 0.00 0.00 2.01
115 116 3.670627 GCCAATCAGCCAAGAAGTTTACG 60.671 47.826 0.00 0.00 0.00 3.18
116 117 3.751175 CCAATCAGCCAAGAAGTTTACGA 59.249 43.478 0.00 0.00 0.00 3.43
117 118 4.378459 CCAATCAGCCAAGAAGTTTACGAC 60.378 45.833 0.00 0.00 0.00 4.34
118 119 2.762745 TCAGCCAAGAAGTTTACGACC 58.237 47.619 0.00 0.00 0.00 4.79
119 120 2.103432 TCAGCCAAGAAGTTTACGACCA 59.897 45.455 0.00 0.00 0.00 4.02
120 121 2.480419 CAGCCAAGAAGTTTACGACCAG 59.520 50.000 0.00 0.00 0.00 4.00
121 122 2.104281 AGCCAAGAAGTTTACGACCAGT 59.896 45.455 0.00 0.00 0.00 4.00
122 123 2.876550 GCCAAGAAGTTTACGACCAGTT 59.123 45.455 0.00 0.00 0.00 3.16
123 124 3.314357 GCCAAGAAGTTTACGACCAGTTT 59.686 43.478 0.00 0.00 0.00 2.66
124 125 4.512571 GCCAAGAAGTTTACGACCAGTTTA 59.487 41.667 0.00 0.00 0.00 2.01
125 126 5.007921 GCCAAGAAGTTTACGACCAGTTTAA 59.992 40.000 0.00 0.00 0.00 1.52
126 127 6.458615 GCCAAGAAGTTTACGACCAGTTTAAA 60.459 38.462 0.00 0.00 0.00 1.52
127 128 7.474190 CCAAGAAGTTTACGACCAGTTTAAAA 58.526 34.615 0.00 0.00 0.00 1.52
128 129 7.430211 CCAAGAAGTTTACGACCAGTTTAAAAC 59.570 37.037 0.00 0.00 32.02 2.43
129 130 6.708676 AGAAGTTTACGACCAGTTTAAAACG 58.291 36.000 0.00 0.00 35.23 3.60
130 131 4.836455 AGTTTACGACCAGTTTAAAACGC 58.164 39.130 0.00 0.00 35.23 4.84
131 132 4.571984 AGTTTACGACCAGTTTAAAACGCT 59.428 37.500 0.00 0.00 35.23 5.07
132 133 5.065090 AGTTTACGACCAGTTTAAAACGCTT 59.935 36.000 0.00 0.00 35.23 4.68
133 134 3.328237 ACGACCAGTTTAAAACGCTTG 57.672 42.857 0.00 0.00 36.23 4.01
134 135 2.679336 ACGACCAGTTTAAAACGCTTGT 59.321 40.909 0.00 0.00 36.23 3.16
135 136 3.242511 ACGACCAGTTTAAAACGCTTGTC 60.243 43.478 0.00 0.00 36.23 3.18
136 137 3.624900 GACCAGTTTAAAACGCTTGTCC 58.375 45.455 0.00 0.00 36.23 4.02
137 138 2.032426 ACCAGTTTAAAACGCTTGTCCG 59.968 45.455 0.00 0.00 36.23 4.79
138 139 2.603652 CCAGTTTAAAACGCTTGTCCGG 60.604 50.000 0.00 0.00 36.23 5.14
139 140 2.288458 CAGTTTAAAACGCTTGTCCGGA 59.712 45.455 0.00 0.00 36.23 5.14
140 141 3.058501 CAGTTTAAAACGCTTGTCCGGAT 60.059 43.478 7.81 0.00 36.23 4.18
141 142 4.152759 CAGTTTAAAACGCTTGTCCGGATA 59.847 41.667 7.81 0.10 36.23 2.59
142 143 4.756135 AGTTTAAAACGCTTGTCCGGATAA 59.244 37.500 7.81 11.17 36.23 1.75
143 144 5.239087 AGTTTAAAACGCTTGTCCGGATAAA 59.761 36.000 15.02 8.58 36.23 1.40
144 145 5.686159 TTAAAACGCTTGTCCGGATAAAA 57.314 34.783 15.02 6.10 0.00 1.52
145 146 4.571372 AAAACGCTTGTCCGGATAAAAA 57.429 36.364 15.02 3.65 0.00 1.94
164 165 5.766150 AAAAATTCGTGATTGGTCTGTGA 57.234 34.783 0.00 0.00 0.00 3.58
165 166 4.749245 AAATTCGTGATTGGTCTGTGAC 57.251 40.909 0.00 0.00 0.00 3.67
175 176 3.311110 TCTGTGACCAGACGGCCC 61.311 66.667 0.00 0.00 42.80 5.80
176 177 3.625897 CTGTGACCAGACGGCCCA 61.626 66.667 0.00 0.00 41.50 5.36
177 178 2.927856 TGTGACCAGACGGCCCAT 60.928 61.111 0.00 0.00 34.57 4.00
178 179 2.125106 GTGACCAGACGGCCCATC 60.125 66.667 0.00 0.00 34.57 3.51
179 180 3.399181 TGACCAGACGGCCCATCC 61.399 66.667 0.00 0.00 34.57 3.51
190 191 1.813513 GGCCCATCCGAACATATGAG 58.186 55.000 10.38 0.24 0.00 2.90
191 192 1.611673 GGCCCATCCGAACATATGAGG 60.612 57.143 10.38 9.73 0.00 3.86
192 193 1.072331 GCCCATCCGAACATATGAGGT 59.928 52.381 10.38 0.00 0.00 3.85
193 194 2.771089 CCCATCCGAACATATGAGGTG 58.229 52.381 10.38 9.85 0.00 4.00
194 195 2.368548 CCCATCCGAACATATGAGGTGA 59.631 50.000 10.38 1.15 0.00 4.02
195 196 3.555795 CCCATCCGAACATATGAGGTGAG 60.556 52.174 10.38 4.77 0.00 3.51
196 197 3.070159 CCATCCGAACATATGAGGTGAGT 59.930 47.826 10.38 0.00 0.00 3.41
197 198 4.443457 CCATCCGAACATATGAGGTGAGTT 60.443 45.833 10.38 0.00 0.00 3.01
198 199 4.819105 TCCGAACATATGAGGTGAGTTT 57.181 40.909 10.38 0.00 0.00 2.66
199 200 5.925506 TCCGAACATATGAGGTGAGTTTA 57.074 39.130 10.38 0.00 0.00 2.01
200 201 6.288941 TCCGAACATATGAGGTGAGTTTAA 57.711 37.500 10.38 0.00 0.00 1.52
201 202 6.338146 TCCGAACATATGAGGTGAGTTTAAG 58.662 40.000 10.38 0.00 0.00 1.85
202 203 5.523916 CCGAACATATGAGGTGAGTTTAAGG 59.476 44.000 10.38 0.00 0.00 2.69
203 204 5.523916 CGAACATATGAGGTGAGTTTAAGGG 59.476 44.000 10.38 0.00 0.00 3.95
204 205 4.781934 ACATATGAGGTGAGTTTAAGGGC 58.218 43.478 10.38 0.00 0.00 5.19
205 206 4.475016 ACATATGAGGTGAGTTTAAGGGCT 59.525 41.667 10.38 0.00 0.00 5.19
206 207 3.636153 ATGAGGTGAGTTTAAGGGCTC 57.364 47.619 0.00 0.00 0.00 4.70
207 208 2.621070 TGAGGTGAGTTTAAGGGCTCT 58.379 47.619 0.00 0.00 33.22 4.09
208 209 2.979678 TGAGGTGAGTTTAAGGGCTCTT 59.020 45.455 3.26 3.26 37.03 2.85
209 210 4.164981 TGAGGTGAGTTTAAGGGCTCTTA 58.835 43.478 0.59 0.59 34.59 2.10
210 211 4.223032 TGAGGTGAGTTTAAGGGCTCTTAG 59.777 45.833 6.09 0.00 36.87 2.18
211 212 3.055021 AGGTGAGTTTAAGGGCTCTTAGC 60.055 47.826 6.09 4.17 41.46 3.09
212 213 2.930682 GTGAGTTTAAGGGCTCTTAGCG 59.069 50.000 6.09 0.00 43.62 4.26
213 214 2.829720 TGAGTTTAAGGGCTCTTAGCGA 59.170 45.455 6.09 0.00 43.62 4.93
214 215 3.119101 TGAGTTTAAGGGCTCTTAGCGAG 60.119 47.826 6.09 0.00 43.62 5.03
215 216 3.097614 AGTTTAAGGGCTCTTAGCGAGA 58.902 45.455 6.09 0.00 43.62 4.04
221 222 2.371910 GGCTCTTAGCGAGACTGTTT 57.628 50.000 0.00 0.00 44.88 2.83
222 223 1.996191 GGCTCTTAGCGAGACTGTTTG 59.004 52.381 0.00 0.00 44.88 2.93
223 224 2.610727 GGCTCTTAGCGAGACTGTTTGT 60.611 50.000 0.00 0.00 44.88 2.83
224 225 3.367087 GGCTCTTAGCGAGACTGTTTGTA 60.367 47.826 0.00 0.00 44.88 2.41
225 226 3.854809 GCTCTTAGCGAGACTGTTTGTAG 59.145 47.826 0.00 0.00 42.62 2.74
226 227 4.616373 GCTCTTAGCGAGACTGTTTGTAGT 60.616 45.833 0.00 0.00 42.62 2.73
227 228 5.391736 GCTCTTAGCGAGACTGTTTGTAGTA 60.392 44.000 0.00 0.00 42.62 1.82
228 229 5.936054 TCTTAGCGAGACTGTTTGTAGTAC 58.064 41.667 0.00 0.00 0.00 2.73
229 230 5.704515 TCTTAGCGAGACTGTTTGTAGTACT 59.295 40.000 0.00 0.00 0.00 2.73
230 231 6.875726 TCTTAGCGAGACTGTTTGTAGTACTA 59.124 38.462 0.00 0.00 0.00 1.82
231 232 5.294050 AGCGAGACTGTTTGTAGTACTAC 57.706 43.478 23.58 23.58 36.63 2.73
232 233 5.002516 AGCGAGACTGTTTGTAGTACTACT 58.997 41.667 28.56 11.51 37.00 2.57
233 234 6.169094 AGCGAGACTGTTTGTAGTACTACTA 58.831 40.000 28.56 20.97 37.00 1.82
245 246 5.837437 GTAGTACTACTACTCCTGCTACGA 58.163 45.833 23.17 0.00 45.70 3.43
246 247 5.350504 AGTACTACTACTCCTGCTACGAA 57.649 43.478 0.00 0.00 0.00 3.85
247 248 5.115480 AGTACTACTACTCCTGCTACGAAC 58.885 45.833 0.00 0.00 0.00 3.95
248 249 3.277715 ACTACTACTCCTGCTACGAACC 58.722 50.000 0.00 0.00 0.00 3.62
249 250 2.211250 ACTACTCCTGCTACGAACCA 57.789 50.000 0.00 0.00 0.00 3.67
250 251 2.522185 ACTACTCCTGCTACGAACCAA 58.478 47.619 0.00 0.00 0.00 3.67
251 252 2.492484 ACTACTCCTGCTACGAACCAAG 59.508 50.000 0.00 0.00 0.00 3.61
252 253 1.629043 ACTCCTGCTACGAACCAAGA 58.371 50.000 0.00 0.00 0.00 3.02
253 254 1.968493 ACTCCTGCTACGAACCAAGAA 59.032 47.619 0.00 0.00 0.00 2.52
254 255 2.367567 ACTCCTGCTACGAACCAAGAAA 59.632 45.455 0.00 0.00 0.00 2.52
255 256 3.181458 ACTCCTGCTACGAACCAAGAAAA 60.181 43.478 0.00 0.00 0.00 2.29
256 257 3.135994 TCCTGCTACGAACCAAGAAAAC 58.864 45.455 0.00 0.00 0.00 2.43
257 258 2.875933 CCTGCTACGAACCAAGAAAACA 59.124 45.455 0.00 0.00 0.00 2.83
258 259 3.314080 CCTGCTACGAACCAAGAAAACAA 59.686 43.478 0.00 0.00 0.00 2.83
259 260 4.201970 CCTGCTACGAACCAAGAAAACAAA 60.202 41.667 0.00 0.00 0.00 2.83
260 261 4.664188 TGCTACGAACCAAGAAAACAAAC 58.336 39.130 0.00 0.00 0.00 2.93
261 262 4.156190 TGCTACGAACCAAGAAAACAAACA 59.844 37.500 0.00 0.00 0.00 2.83
262 263 4.497966 GCTACGAACCAAGAAAACAAACAC 59.502 41.667 0.00 0.00 0.00 3.32
263 264 3.494232 ACGAACCAAGAAAACAAACACG 58.506 40.909 0.00 0.00 0.00 4.49
264 265 2.849473 CGAACCAAGAAAACAAACACGG 59.151 45.455 0.00 0.00 0.00 4.94
291 292 0.669077 GTGACTGACTGACTCGTGGT 59.331 55.000 0.00 0.00 0.00 4.16
294 295 0.755698 ACTGACTGACTCGTGGTGGT 60.756 55.000 0.00 0.00 0.00 4.16
298 299 1.300931 CTGACTCGTGGTGGTGGTG 60.301 63.158 0.00 0.00 0.00 4.17
299 300 2.030562 GACTCGTGGTGGTGGTGG 59.969 66.667 0.00 0.00 0.00 4.61
300 301 2.766651 ACTCGTGGTGGTGGTGGT 60.767 61.111 0.00 0.00 0.00 4.16
301 302 1.458020 ACTCGTGGTGGTGGTGGTA 60.458 57.895 0.00 0.00 0.00 3.25
302 303 1.005394 CTCGTGGTGGTGGTGGTAC 60.005 63.158 0.00 0.00 0.00 3.34
303 304 1.750341 CTCGTGGTGGTGGTGGTACA 61.750 60.000 0.00 0.00 0.00 2.90
304 305 1.146485 CGTGGTGGTGGTGGTACAA 59.854 57.895 0.00 0.00 44.16 2.41
305 306 0.464013 CGTGGTGGTGGTGGTACAAA 60.464 55.000 0.00 0.00 44.16 2.83
338 339 9.495572 TGCTTCTTTTAGTTTTTCCTTTTTGAA 57.504 25.926 0.00 0.00 0.00 2.69
421 422 2.633657 CAGCAAGCGAACAAGCGT 59.366 55.556 0.00 0.00 43.00 5.07
423 424 2.127232 GCAAGCGAACAAGCGTCC 60.127 61.111 0.00 0.00 43.00 4.79
452 466 3.931631 CTGTCTGCTCCCTCCCCCA 62.932 68.421 0.00 0.00 0.00 4.96
457 471 4.741239 GCTCCCTCCCCCACCTCA 62.741 72.222 0.00 0.00 0.00 3.86
462 476 2.122729 CTCCCCCACCTCACCTCA 59.877 66.667 0.00 0.00 0.00 3.86
558 583 4.477975 CACGAGCTCCCGACCGAC 62.478 72.222 8.47 0.00 0.00 4.79
561 586 3.519930 GAGCTCCCGACCGACCTC 61.520 72.222 0.87 0.00 0.00 3.85
562 587 3.999297 GAGCTCCCGACCGACCTCT 62.999 68.421 0.87 0.00 0.00 3.69
563 588 3.827898 GCTCCCGACCGACCTCTG 61.828 72.222 0.00 0.00 0.00 3.35
564 589 2.361357 CTCCCGACCGACCTCTGT 60.361 66.667 0.00 0.00 0.00 3.41
565 590 1.077930 CTCCCGACCGACCTCTGTA 60.078 63.158 0.00 0.00 0.00 2.74
566 591 1.077930 TCCCGACCGACCTCTGTAG 60.078 63.158 0.00 0.00 0.00 2.74
567 592 2.772691 CCCGACCGACCTCTGTAGC 61.773 68.421 0.00 0.00 0.00 3.58
568 593 1.749638 CCGACCGACCTCTGTAGCT 60.750 63.158 0.00 0.00 0.00 3.32
569 594 0.463295 CCGACCGACCTCTGTAGCTA 60.463 60.000 0.00 0.00 0.00 3.32
570 595 0.656785 CGACCGACCTCTGTAGCTAC 59.343 60.000 17.30 17.30 0.00 3.58
571 596 1.023502 GACCGACCTCTGTAGCTACC 58.976 60.000 21.01 3.58 0.00 3.18
572 597 0.747283 ACCGACCTCTGTAGCTACCG 60.747 60.000 21.01 14.92 0.00 4.02
573 598 1.445716 CCGACCTCTGTAGCTACCGG 61.446 65.000 21.01 19.51 0.00 5.28
574 599 1.734748 GACCTCTGTAGCTACCGGC 59.265 63.158 21.01 10.70 42.19 6.13
655 680 2.282462 GCTGTTCTGGTGGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
657 682 2.776526 TGTTCTGGTGGGGTGGCT 60.777 61.111 0.00 0.00 0.00 4.75
658 683 2.282462 GTTCTGGTGGGGTGGCTG 60.282 66.667 0.00 0.00 0.00 4.85
672 697 4.695231 GCTGGCACGCACTTGCTG 62.695 66.667 0.00 0.00 42.56 4.41
673 698 4.695231 CTGGCACGCACTTGCTGC 62.695 66.667 13.85 13.85 42.56 5.25
675 700 4.395583 GGCACGCACTTGCTGCTC 62.396 66.667 18.66 9.95 44.64 4.26
700 732 2.815647 GCGCTGTGAGGTAGGTGC 60.816 66.667 0.00 0.00 0.00 5.01
738 770 0.673644 CATTGTCGCGTCCCTTTCCT 60.674 55.000 5.77 0.00 0.00 3.36
771 804 2.278923 GCTTCGGTCTAGCTCGGC 60.279 66.667 0.00 0.00 35.74 5.54
787 820 1.274167 TCGGCTTGGTTATCTTCGTGT 59.726 47.619 0.00 0.00 0.00 4.49
793 826 4.315803 CTTGGTTATCTTCGTGTCTGGTT 58.684 43.478 0.00 0.00 0.00 3.67
794 827 3.659786 TGGTTATCTTCGTGTCTGGTTG 58.340 45.455 0.00 0.00 0.00 3.77
796 829 3.306502 GGTTATCTTCGTGTCTGGTTGGA 60.307 47.826 0.00 0.00 0.00 3.53
840 873 0.461135 CATTGGCCCGGATTTGGAAG 59.539 55.000 0.73 0.00 0.00 3.46
848 882 3.429410 GCCCGGATTTGGAAGATCTTTTG 60.429 47.826 9.87 0.00 0.00 2.44
850 884 4.947388 CCCGGATTTGGAAGATCTTTTGTA 59.053 41.667 9.87 0.00 0.00 2.41
875 909 3.743521 AGTTCACTGTTTGCTGCATCTA 58.256 40.909 1.84 0.00 0.00 1.98
881 915 2.352034 CTGTTTGCTGCATCTAGAGCTG 59.648 50.000 1.84 13.14 36.11 4.24
909 957 3.055094 TCTTTCTTCTTGCTCCGCCTAAT 60.055 43.478 0.00 0.00 0.00 1.73
1104 1191 0.814457 GCAATGGCAACCCGATACAA 59.186 50.000 0.00 0.00 40.72 2.41
1578 1674 0.321346 TGCTGCTCAAGTTCATCGGA 59.679 50.000 0.00 0.00 0.00 4.55
1671 1767 2.359404 GACTCCGAGGACCCCAGA 59.641 66.667 0.00 0.00 0.00 3.86
1891 1987 6.183361 ACACAAGATCTTTCTCTGGAGAGTTT 60.183 38.462 4.86 0.00 42.60 2.66
1939 2035 1.147153 GGGGTGTATCTCCAGCAGC 59.853 63.158 0.00 0.00 36.51 5.25
1950 2046 1.206610 CTCCAGCAGCTGACATACTGT 59.793 52.381 24.90 0.00 36.26 3.55
2022 2118 1.506493 GTCTGCTGAGATATTGGCCG 58.494 55.000 0.00 0.00 0.00 6.13
2034 2130 2.507407 ATTGGCCGGTGACAAATAGT 57.493 45.000 1.90 0.00 0.00 2.12
2118 2214 5.253330 GAGTTCCAGAAATGTATGGTTCCA 58.747 41.667 0.00 0.00 37.41 3.53
2154 2250 2.149578 GCTCAGTGCATCAACAGTTCT 58.850 47.619 0.00 0.00 42.31 3.01
2157 2253 4.001652 CTCAGTGCATCAACAGTTCTCAT 58.998 43.478 0.00 0.00 0.00 2.90
2189 2285 0.825840 TGCCTTGCCCCAAGTAACAC 60.826 55.000 4.48 0.00 39.58 3.32
2221 2317 8.233190 GGTAATTCTGAGTTCTTCAATGTTCTG 58.767 37.037 0.00 0.00 34.81 3.02
2222 2318 7.814264 AATTCTGAGTTCTTCAATGTTCTGT 57.186 32.000 0.00 0.00 34.81 3.41
2224 2320 6.609237 TCTGAGTTCTTCAATGTTCTGTTG 57.391 37.500 0.00 0.00 34.81 3.33
2225 2321 5.008019 TCTGAGTTCTTCAATGTTCTGTTGC 59.992 40.000 0.00 0.00 34.81 4.17
2226 2322 4.639755 TGAGTTCTTCAATGTTCTGTTGCA 59.360 37.500 0.00 0.00 31.34 4.08
2245 2387 6.535150 TGTTGCAGTATTCTTAGATGCACTAC 59.465 38.462 7.62 5.80 45.80 2.73
2270 2416 6.260050 CACTTGTTTCTGCCACTTAAACTAGA 59.740 38.462 13.01 0.00 37.83 2.43
2276 2422 5.539048 TCTGCCACTTAAACTAGACACTTC 58.461 41.667 0.00 0.00 0.00 3.01
2283 2429 7.495934 CCACTTAAACTAGACACTTCCATATGG 59.504 40.741 16.25 16.25 0.00 2.74
2328 2474 4.449405 GGTGAAGTCTGAAGAAGTTAGCAC 59.551 45.833 0.00 0.00 0.00 4.40
2336 2482 4.776349 TGAAGAAGTTAGCACCACTCAAA 58.224 39.130 0.00 0.00 0.00 2.69
2353 2499 5.184479 CACTCAAACAGAATGGGTCATGATT 59.816 40.000 0.00 0.00 43.62 2.57
2479 2636 2.241160 TGGCAAATGAGCAACAGATGT 58.759 42.857 0.00 0.00 35.83 3.06
2480 2637 2.229543 TGGCAAATGAGCAACAGATGTC 59.770 45.455 0.00 0.00 35.83 3.06
2481 2638 2.490903 GGCAAATGAGCAACAGATGTCT 59.509 45.455 0.00 0.00 35.83 3.41
2482 2639 3.672511 GGCAAATGAGCAACAGATGTCTG 60.673 47.826 8.42 8.42 42.21 3.51
2483 2640 3.189910 GCAAATGAGCAACAGATGTCTGA 59.810 43.478 16.41 0.00 46.59 3.27
2484 2641 4.320714 GCAAATGAGCAACAGATGTCTGAA 60.321 41.667 16.41 0.00 46.59 3.02
2485 2642 5.152097 CAAATGAGCAACAGATGTCTGAAC 58.848 41.667 16.41 5.52 46.59 3.18
2497 2654 1.620819 TGTCTGAACTCTGAAGCCCTC 59.379 52.381 0.00 0.00 0.00 4.30
2498 2655 0.891373 TCTGAACTCTGAAGCCCTCG 59.109 55.000 0.00 0.00 0.00 4.63
2521 2684 5.563751 CGAAGTTAATGTTGACAAATGGACG 59.436 40.000 0.00 0.00 0.00 4.79
2543 2706 2.223971 ACATATCCAAAGTAGGCCGTCG 60.224 50.000 0.00 0.00 0.00 5.12
2634 2800 6.309712 CTCAAATGAGTTCACACATCAGTT 57.690 37.500 2.18 0.00 37.40 3.16
2657 2834 4.323417 TGTTATGGTCACTTAGTTGGCTG 58.677 43.478 0.00 0.00 0.00 4.85
2828 3011 0.535335 TTCCGGCGCTAGAACAGAAT 59.465 50.000 7.64 0.00 0.00 2.40
2876 3059 1.005867 GAACCTGACCGCCAACGTA 60.006 57.895 0.00 0.00 37.70 3.57
3057 3240 1.229400 GTCCTGGTGGGGTAGGTCA 60.229 63.158 0.00 0.00 35.54 4.02
3094 3277 4.321966 TTGTCGCCGCCACCATCA 62.322 61.111 0.00 0.00 0.00 3.07
3126 3309 1.195442 TTGGTCGGTGGAGGTGCATA 61.195 55.000 0.00 0.00 0.00 3.14
3233 3416 4.270084 CGTTGTAACTATGCCCACTATGTG 59.730 45.833 0.00 0.00 0.00 3.21
3251 3435 4.760530 TGTGTATGCTCTAGAGGCAAAT 57.239 40.909 21.23 8.30 43.14 2.32
3252 3436 4.445453 TGTGTATGCTCTAGAGGCAAATG 58.555 43.478 21.23 0.00 43.14 2.32
3253 3437 4.080919 TGTGTATGCTCTAGAGGCAAATGT 60.081 41.667 21.23 7.38 43.14 2.71
3254 3438 5.128663 TGTGTATGCTCTAGAGGCAAATGTA 59.871 40.000 21.23 6.53 43.14 2.29
3255 3439 5.463724 GTGTATGCTCTAGAGGCAAATGTAC 59.536 44.000 21.23 16.15 43.14 2.90
3256 3440 3.543680 TGCTCTAGAGGCAAATGTACC 57.456 47.619 21.23 1.13 36.71 3.34
3257 3441 3.107601 TGCTCTAGAGGCAAATGTACCT 58.892 45.455 21.23 0.00 39.65 3.08
3258 3442 3.118629 TGCTCTAGAGGCAAATGTACCTG 60.119 47.826 21.23 0.00 36.05 4.00
3259 3443 3.118592 GCTCTAGAGGCAAATGTACCTGT 60.119 47.826 21.23 0.00 36.05 4.00
3372 3560 3.486542 GCCATTTCTCTCGAGCAAATGTC 60.487 47.826 29.10 21.55 35.99 3.06
3377 3565 0.320374 TCTCGAGCAAATGTCGGGTT 59.680 50.000 7.81 0.00 39.07 4.11
3393 3581 1.298859 GGTTGCCGAGCACGATTTCT 61.299 55.000 4.70 0.00 38.71 2.52
3442 3630 8.238481 TCTTGTGTTTTGAATTTGACTGTTTC 57.762 30.769 0.00 0.00 0.00 2.78
3464 3653 2.432510 TGACCATGTGGGAAACAAAACC 59.567 45.455 3.77 0.00 43.61 3.27
3504 3696 4.155709 TCCTAGATGTCAGGGCATTCTAG 58.844 47.826 0.00 10.66 33.66 2.43
3522 3718 9.534565 GCATTCTAGTTGTTGTATAGATCAGAA 57.465 33.333 0.00 0.00 0.00 3.02
3706 3994 1.872313 CCACCTAGACTACGACGGATC 59.128 57.143 0.00 0.00 0.00 3.36
3710 3998 2.548904 CCTAGACTACGACGGATCTTGG 59.451 54.545 0.00 5.67 0.00 3.61
3711 3999 2.125773 AGACTACGACGGATCTTGGT 57.874 50.000 0.00 0.00 0.00 3.67
3712 4000 2.444421 AGACTACGACGGATCTTGGTT 58.556 47.619 0.00 0.00 0.00 3.67
3741 4029 8.630054 TTACACCACTGTCAGCTTATTAATTT 57.370 30.769 0.00 0.00 0.00 1.82
3743 4031 5.801947 CACCACTGTCAGCTTATTAATTTGC 59.198 40.000 0.00 0.00 0.00 3.68
3758 4048 1.531739 TTTGCAAGAACCCATCGGCC 61.532 55.000 0.00 0.00 33.81 6.13
3778 4068 4.872124 GGCCAAATTAAGAATCAGGCAAAG 59.128 41.667 0.00 0.00 40.49 2.77
3785 4075 6.808008 TTAAGAATCAGGCAAAGAACAGAG 57.192 37.500 0.00 0.00 0.00 3.35
3786 4076 3.080319 AGAATCAGGCAAAGAACAGAGC 58.920 45.455 0.00 0.00 0.00 4.09
3790 4080 1.002033 CAGGCAAAGAACAGAGCACAC 60.002 52.381 0.00 0.00 0.00 3.82
3792 4082 1.265365 GGCAAAGAACAGAGCACACTC 59.735 52.381 0.00 0.00 43.82 3.51
3810 4100 5.455525 CACACTCTGGAAAATGAAAAACGTC 59.544 40.000 0.00 0.00 0.00 4.34
3842 4133 7.914465 TCAACAAAATTACAATTTGCCAGTTC 58.086 30.769 0.86 0.00 40.58 3.01
3846 4137 8.955388 ACAAAATTACAATTTGCCAGTTCTTTT 58.045 25.926 0.86 0.00 40.58 2.27
3918 6558 0.107643 TCCAATGAACCGCACACAGA 59.892 50.000 0.00 0.00 0.00 3.41
3919 6559 1.167851 CCAATGAACCGCACACAGAT 58.832 50.000 0.00 0.00 0.00 2.90
3948 6596 4.637977 GGGATGTCAAGAAGAGGATTGAAC 59.362 45.833 0.00 0.00 37.19 3.18
3954 6602 6.147821 TGTCAAGAAGAGGATTGAACGAATTC 59.852 38.462 0.00 0.00 37.19 2.17
4003 6651 3.360740 TCCCTATGAAAGCCCTATGGA 57.639 47.619 0.00 0.00 0.00 3.41
4004 6652 3.251484 TCCCTATGAAAGCCCTATGGAG 58.749 50.000 0.00 0.00 0.00 3.86
4005 6653 2.982488 CCCTATGAAAGCCCTATGGAGT 59.018 50.000 0.00 0.00 0.00 3.85
4006 6654 4.140543 TCCCTATGAAAGCCCTATGGAGTA 60.141 45.833 0.00 0.00 0.00 2.59
4007 6655 4.785376 CCCTATGAAAGCCCTATGGAGTAT 59.215 45.833 0.00 0.00 0.00 2.12
4008 6656 5.338708 CCCTATGAAAGCCCTATGGAGTATG 60.339 48.000 0.00 0.00 0.00 2.39
4009 6657 4.647564 ATGAAAGCCCTATGGAGTATGG 57.352 45.455 0.00 0.00 0.00 2.74
4034 6682 8.954350 GGATCATAGGATTAGGTCATCAAATTG 58.046 37.037 0.00 0.00 32.67 2.32
4040 6688 7.128077 AGGATTAGGTCATCAAATTGGAATGT 58.872 34.615 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.888436 GATCCCACACGGACTGCTCA 61.888 60.000 0.00 0.00 46.09 4.26
1 2 1.153549 GATCCCACACGGACTGCTC 60.154 63.158 0.00 0.00 46.09 4.26
3 4 1.153549 GAGATCCCACACGGACTGC 60.154 63.158 0.00 0.00 46.09 4.40
4 5 0.826715 ATGAGATCCCACACGGACTG 59.173 55.000 0.00 0.00 46.09 3.51
5 6 1.115467 GATGAGATCCCACACGGACT 58.885 55.000 0.00 0.00 46.09 3.85
6 7 0.249073 CGATGAGATCCCACACGGAC 60.249 60.000 0.00 0.00 46.09 4.79
8 9 0.249073 GACGATGAGATCCCACACGG 60.249 60.000 9.57 0.00 0.00 4.94
10 11 1.478510 ACTGACGATGAGATCCCACAC 59.521 52.381 0.00 0.00 0.00 3.82
11 12 1.852633 ACTGACGATGAGATCCCACA 58.147 50.000 0.00 0.00 0.00 4.17
12 13 2.952978 AGTACTGACGATGAGATCCCAC 59.047 50.000 0.00 0.00 0.00 4.61
13 14 3.298686 AGTACTGACGATGAGATCCCA 57.701 47.619 0.00 0.00 0.00 4.37
14 15 3.186817 CGTAGTACTGACGATGAGATCCC 59.813 52.174 5.39 0.00 42.98 3.85
15 16 3.808726 ACGTAGTACTGACGATGAGATCC 59.191 47.826 22.87 0.00 41.94 3.36
16 17 4.318903 CCACGTAGTACTGACGATGAGATC 60.319 50.000 22.87 0.00 41.61 2.75
17 18 3.560481 CCACGTAGTACTGACGATGAGAT 59.440 47.826 22.87 5.33 41.61 2.75
18 19 2.934553 CCACGTAGTACTGACGATGAGA 59.065 50.000 22.87 0.00 41.61 3.27
19 20 2.539142 GCCACGTAGTACTGACGATGAG 60.539 54.545 22.87 13.17 41.61 2.90
20 21 1.399440 GCCACGTAGTACTGACGATGA 59.601 52.381 22.87 0.00 41.61 2.92
21 22 1.823828 GCCACGTAGTACTGACGATG 58.176 55.000 22.87 17.67 41.61 3.84
22 23 0.376152 CGCCACGTAGTACTGACGAT 59.624 55.000 22.87 10.64 41.61 3.73
23 24 1.638388 CCGCCACGTAGTACTGACGA 61.638 60.000 22.87 0.00 41.61 4.20
24 25 1.226211 CCGCCACGTAGTACTGACG 60.226 63.158 17.61 17.61 41.61 4.35
25 26 0.737219 ATCCGCCACGTAGTACTGAC 59.263 55.000 5.39 0.00 41.61 3.51
26 27 0.736636 CATCCGCCACGTAGTACTGA 59.263 55.000 5.39 0.00 41.61 3.41
27 28 0.870307 GCATCCGCCACGTAGTACTG 60.870 60.000 5.39 0.00 41.61 2.74
28 29 1.436336 GCATCCGCCACGTAGTACT 59.564 57.895 0.00 0.00 41.61 2.73
29 30 1.942712 CGCATCCGCCACGTAGTAC 60.943 63.158 0.00 0.00 41.61 2.73
30 31 2.410060 CGCATCCGCCACGTAGTA 59.590 61.111 0.00 0.00 41.61 1.82
41 42 3.861263 GAACGTTCGGGCGCATCC 61.861 66.667 13.36 0.00 34.88 3.51
42 43 3.861263 GGAACGTTCGGGCGCATC 61.861 66.667 21.34 0.00 34.88 3.91
43 44 2.581208 TATGGAACGTTCGGGCGCAT 62.581 55.000 21.34 18.99 34.88 4.73
44 45 2.581208 ATATGGAACGTTCGGGCGCA 62.581 55.000 21.34 13.60 34.88 6.09
45 46 1.828331 GATATGGAACGTTCGGGCGC 61.828 60.000 21.34 0.00 34.88 6.53
46 47 1.219522 GGATATGGAACGTTCGGGCG 61.220 60.000 21.34 0.00 37.94 6.13
47 48 0.883370 GGGATATGGAACGTTCGGGC 60.883 60.000 21.34 8.98 0.00 6.13
48 49 0.250166 GGGGATATGGAACGTTCGGG 60.250 60.000 21.34 0.00 0.00 5.14
49 50 0.756903 AGGGGATATGGAACGTTCGG 59.243 55.000 21.34 0.00 0.00 4.30
50 51 1.411246 TGAGGGGATATGGAACGTTCG 59.589 52.381 21.34 0.00 0.00 3.95
51 52 3.771577 ATGAGGGGATATGGAACGTTC 57.228 47.619 20.14 20.14 0.00 3.95
52 53 5.843019 AATATGAGGGGATATGGAACGTT 57.157 39.130 0.00 0.00 0.00 3.99
53 54 5.843019 AAATATGAGGGGATATGGAACGT 57.157 39.130 0.00 0.00 0.00 3.99
54 55 6.349300 CCTAAATATGAGGGGATATGGAACG 58.651 44.000 0.00 0.00 0.00 3.95
55 56 6.069381 AGCCTAAATATGAGGGGATATGGAAC 60.069 42.308 6.16 0.00 34.35 3.62
56 57 6.038609 AGCCTAAATATGAGGGGATATGGAA 58.961 40.000 6.16 0.00 34.35 3.53
57 58 5.429762 CAGCCTAAATATGAGGGGATATGGA 59.570 44.000 6.16 0.00 34.35 3.41
58 59 5.429762 TCAGCCTAAATATGAGGGGATATGG 59.570 44.000 6.16 0.00 34.35 2.74
59 60 6.566079 TCAGCCTAAATATGAGGGGATATG 57.434 41.667 6.16 0.00 34.35 1.78
60 61 7.777889 ATTCAGCCTAAATATGAGGGGATAT 57.222 36.000 6.16 0.00 34.35 1.63
61 62 7.147724 CGTATTCAGCCTAAATATGAGGGGATA 60.148 40.741 6.16 0.00 34.35 2.59
62 63 6.352222 CGTATTCAGCCTAAATATGAGGGGAT 60.352 42.308 6.16 0.00 34.35 3.85
63 64 5.046591 CGTATTCAGCCTAAATATGAGGGGA 60.047 44.000 6.16 0.00 34.35 4.81
64 65 5.046591 TCGTATTCAGCCTAAATATGAGGGG 60.047 44.000 6.16 0.00 32.37 4.79
65 66 6.037786 TCGTATTCAGCCTAAATATGAGGG 57.962 41.667 6.16 0.00 32.37 4.30
67 68 6.102663 CCCTCGTATTCAGCCTAAATATGAG 58.897 44.000 9.16 9.16 44.76 2.90
68 69 5.542635 ACCCTCGTATTCAGCCTAAATATGA 59.457 40.000 0.00 0.00 34.82 2.15
69 70 5.639506 CACCCTCGTATTCAGCCTAAATATG 59.360 44.000 0.00 0.00 0.00 1.78
70 71 5.794894 CACCCTCGTATTCAGCCTAAATAT 58.205 41.667 0.00 0.00 0.00 1.28
71 72 4.502604 GCACCCTCGTATTCAGCCTAAATA 60.503 45.833 0.00 0.00 0.00 1.40
72 73 3.744530 GCACCCTCGTATTCAGCCTAAAT 60.745 47.826 0.00 0.00 0.00 1.40
73 74 2.419574 GCACCCTCGTATTCAGCCTAAA 60.420 50.000 0.00 0.00 0.00 1.85
74 75 1.138266 GCACCCTCGTATTCAGCCTAA 59.862 52.381 0.00 0.00 0.00 2.69
75 76 0.750850 GCACCCTCGTATTCAGCCTA 59.249 55.000 0.00 0.00 0.00 3.93
76 77 1.522569 GCACCCTCGTATTCAGCCT 59.477 57.895 0.00 0.00 0.00 4.58
77 78 1.523938 GGCACCCTCGTATTCAGCC 60.524 63.158 0.00 0.00 0.00 4.85
78 79 0.392461 TTGGCACCCTCGTATTCAGC 60.392 55.000 0.00 0.00 0.00 4.26
79 80 2.213499 GATTGGCACCCTCGTATTCAG 58.787 52.381 0.00 0.00 0.00 3.02
80 81 1.557371 TGATTGGCACCCTCGTATTCA 59.443 47.619 0.00 0.00 0.00 2.57
81 82 2.213499 CTGATTGGCACCCTCGTATTC 58.787 52.381 0.00 0.00 0.00 1.75
82 83 1.747206 GCTGATTGGCACCCTCGTATT 60.747 52.381 0.00 0.00 0.00 1.89
83 84 0.179045 GCTGATTGGCACCCTCGTAT 60.179 55.000 0.00 0.00 0.00 3.06
84 85 1.220749 GCTGATTGGCACCCTCGTA 59.779 57.895 0.00 0.00 0.00 3.43
85 86 2.045926 GCTGATTGGCACCCTCGT 60.046 61.111 0.00 0.00 0.00 4.18
86 87 2.825836 GGCTGATTGGCACCCTCG 60.826 66.667 0.00 0.00 41.37 4.63
87 88 2.356278 TGGCTGATTGGCACCCTC 59.644 61.111 0.00 0.00 46.76 4.30
93 94 3.670627 CGTAAACTTCTTGGCTGATTGGC 60.671 47.826 0.00 0.00 42.18 4.52
94 95 3.751175 TCGTAAACTTCTTGGCTGATTGG 59.249 43.478 0.00 0.00 0.00 3.16
95 96 4.378459 GGTCGTAAACTTCTTGGCTGATTG 60.378 45.833 0.00 0.00 0.00 2.67
96 97 3.751698 GGTCGTAAACTTCTTGGCTGATT 59.248 43.478 0.00 0.00 0.00 2.57
97 98 3.244422 TGGTCGTAAACTTCTTGGCTGAT 60.244 43.478 0.00 0.00 0.00 2.90
98 99 2.103432 TGGTCGTAAACTTCTTGGCTGA 59.897 45.455 0.00 0.00 0.00 4.26
99 100 2.480419 CTGGTCGTAAACTTCTTGGCTG 59.520 50.000 0.00 0.00 0.00 4.85
100 101 2.104281 ACTGGTCGTAAACTTCTTGGCT 59.896 45.455 0.00 0.00 0.00 4.75
101 102 2.490991 ACTGGTCGTAAACTTCTTGGC 58.509 47.619 0.00 0.00 0.00 4.52
102 103 6.607735 TTAAACTGGTCGTAAACTTCTTGG 57.392 37.500 0.00 0.00 0.00 3.61
103 104 7.163032 CGTTTTAAACTGGTCGTAAACTTCTTG 59.837 37.037 6.27 0.00 0.00 3.02
104 105 7.182089 CGTTTTAAACTGGTCGTAAACTTCTT 58.818 34.615 6.27 0.00 0.00 2.52
105 106 6.708676 CGTTTTAAACTGGTCGTAAACTTCT 58.291 36.000 6.27 0.00 0.00 2.85
106 107 5.393452 GCGTTTTAAACTGGTCGTAAACTTC 59.607 40.000 6.27 0.00 0.00 3.01
107 108 5.065090 AGCGTTTTAAACTGGTCGTAAACTT 59.935 36.000 6.27 0.00 0.00 2.66
108 109 4.571984 AGCGTTTTAAACTGGTCGTAAACT 59.428 37.500 6.27 0.00 0.00 2.66
109 110 4.836455 AGCGTTTTAAACTGGTCGTAAAC 58.164 39.130 6.27 0.00 0.00 2.01
110 111 5.163774 ACAAGCGTTTTAAACTGGTCGTAAA 60.164 36.000 6.27 0.00 0.00 2.01
111 112 4.332268 ACAAGCGTTTTAAACTGGTCGTAA 59.668 37.500 6.27 0.00 0.00 3.18
112 113 3.870419 ACAAGCGTTTTAAACTGGTCGTA 59.130 39.130 6.27 0.00 0.00 3.43
113 114 2.679336 ACAAGCGTTTTAAACTGGTCGT 59.321 40.909 6.27 0.00 0.00 4.34
114 115 3.285745 GACAAGCGTTTTAAACTGGTCG 58.714 45.455 6.27 0.00 0.00 4.79
115 116 3.624900 GGACAAGCGTTTTAAACTGGTC 58.375 45.455 6.27 7.60 0.00 4.02
116 117 2.032426 CGGACAAGCGTTTTAAACTGGT 59.968 45.455 6.27 2.94 0.00 4.00
117 118 2.603652 CCGGACAAGCGTTTTAAACTGG 60.604 50.000 0.00 0.00 0.00 4.00
118 119 2.288458 TCCGGACAAGCGTTTTAAACTG 59.712 45.455 0.00 0.60 0.00 3.16
119 120 2.563702 TCCGGACAAGCGTTTTAAACT 58.436 42.857 0.00 0.00 0.00 2.66
120 121 3.547649 ATCCGGACAAGCGTTTTAAAC 57.452 42.857 6.12 0.00 0.00 2.01
121 122 5.686159 TTTATCCGGACAAGCGTTTTAAA 57.314 34.783 6.12 1.15 0.00 1.52
122 123 5.686159 TTTTATCCGGACAAGCGTTTTAA 57.314 34.783 6.12 0.00 0.00 1.52
123 124 5.686159 TTTTTATCCGGACAAGCGTTTTA 57.314 34.783 6.12 0.00 0.00 1.52
124 125 4.571372 TTTTTATCCGGACAAGCGTTTT 57.429 36.364 6.12 0.00 0.00 2.43
142 143 5.519722 GTCACAGACCAATCACGAATTTTT 58.480 37.500 0.00 0.00 0.00 1.94
143 144 5.108385 GTCACAGACCAATCACGAATTTT 57.892 39.130 0.00 0.00 0.00 1.82
144 145 4.749245 GTCACAGACCAATCACGAATTT 57.251 40.909 0.00 0.00 0.00 1.82
159 160 2.859273 GATGGGCCGTCTGGTCACAG 62.859 65.000 18.69 0.00 43.76 3.66
160 161 2.927856 ATGGGCCGTCTGGTCACA 60.928 61.111 0.00 0.00 43.76 3.58
161 162 2.125106 GATGGGCCGTCTGGTCAC 60.125 66.667 18.69 0.00 43.76 3.67
162 163 3.399181 GGATGGGCCGTCTGGTCA 61.399 66.667 24.35 0.00 43.76 4.02
171 172 1.611673 CCTCATATGTTCGGATGGGCC 60.612 57.143 1.90 0.00 0.00 5.80
172 173 1.072331 ACCTCATATGTTCGGATGGGC 59.928 52.381 1.90 0.00 0.00 5.36
173 174 2.368548 TCACCTCATATGTTCGGATGGG 59.631 50.000 1.90 0.00 0.00 4.00
174 175 3.070159 ACTCACCTCATATGTTCGGATGG 59.930 47.826 1.90 0.00 0.00 3.51
175 176 4.327982 ACTCACCTCATATGTTCGGATG 57.672 45.455 1.90 4.38 0.00 3.51
176 177 5.359194 AAACTCACCTCATATGTTCGGAT 57.641 39.130 1.90 0.00 0.00 4.18
177 178 4.819105 AAACTCACCTCATATGTTCGGA 57.181 40.909 1.90 0.00 0.00 4.55
178 179 5.523916 CCTTAAACTCACCTCATATGTTCGG 59.476 44.000 1.90 4.93 0.00 4.30
179 180 5.523916 CCCTTAAACTCACCTCATATGTTCG 59.476 44.000 1.90 0.00 0.00 3.95
180 181 5.297029 GCCCTTAAACTCACCTCATATGTTC 59.703 44.000 1.90 0.00 0.00 3.18
181 182 5.044846 AGCCCTTAAACTCACCTCATATGTT 60.045 40.000 1.90 0.00 0.00 2.71
182 183 4.475016 AGCCCTTAAACTCACCTCATATGT 59.525 41.667 1.90 0.00 0.00 2.29
183 184 5.041191 AGCCCTTAAACTCACCTCATATG 57.959 43.478 0.00 0.00 0.00 1.78
184 185 4.971924 AGAGCCCTTAAACTCACCTCATAT 59.028 41.667 0.00 0.00 35.28 1.78
185 186 4.362677 AGAGCCCTTAAACTCACCTCATA 58.637 43.478 0.00 0.00 35.28 2.15
186 187 3.185455 AGAGCCCTTAAACTCACCTCAT 58.815 45.455 0.00 0.00 35.28 2.90
187 188 2.621070 AGAGCCCTTAAACTCACCTCA 58.379 47.619 0.00 0.00 35.28 3.86
188 189 3.704800 AAGAGCCCTTAAACTCACCTC 57.295 47.619 0.00 0.00 35.28 3.85
189 190 3.055021 GCTAAGAGCCCTTAAACTCACCT 60.055 47.826 0.00 0.00 34.71 4.00
190 191 3.271729 GCTAAGAGCCCTTAAACTCACC 58.728 50.000 0.00 0.00 34.71 4.02
191 192 2.930682 CGCTAAGAGCCCTTAAACTCAC 59.069 50.000 0.00 0.00 38.18 3.51
192 193 2.829720 TCGCTAAGAGCCCTTAAACTCA 59.170 45.455 0.00 0.00 38.18 3.41
193 194 3.130693 TCTCGCTAAGAGCCCTTAAACTC 59.869 47.826 0.00 0.00 46.44 3.01
194 195 3.097614 TCTCGCTAAGAGCCCTTAAACT 58.902 45.455 0.00 0.00 46.44 2.66
195 196 3.119065 AGTCTCGCTAAGAGCCCTTAAAC 60.119 47.826 0.00 0.00 46.44 2.01
196 197 3.097614 AGTCTCGCTAAGAGCCCTTAAA 58.902 45.455 0.00 0.00 46.44 1.52
197 198 2.427453 CAGTCTCGCTAAGAGCCCTTAA 59.573 50.000 0.00 0.00 46.44 1.85
198 199 2.025155 CAGTCTCGCTAAGAGCCCTTA 58.975 52.381 0.00 0.00 46.44 2.69
199 200 0.820871 CAGTCTCGCTAAGAGCCCTT 59.179 55.000 0.00 0.00 46.44 3.95
200 201 0.323908 ACAGTCTCGCTAAGAGCCCT 60.324 55.000 0.00 0.00 46.44 5.19
201 202 0.533032 AACAGTCTCGCTAAGAGCCC 59.467 55.000 0.00 0.00 46.44 5.19
202 203 1.996191 CAAACAGTCTCGCTAAGAGCC 59.004 52.381 0.00 0.00 46.44 4.70
203 204 2.678324 ACAAACAGTCTCGCTAAGAGC 58.322 47.619 0.00 0.00 46.44 4.09
205 206 5.704515 AGTACTACAAACAGTCTCGCTAAGA 59.295 40.000 0.00 0.00 0.00 2.10
206 207 5.940595 AGTACTACAAACAGTCTCGCTAAG 58.059 41.667 0.00 0.00 0.00 2.18
207 208 5.954296 AGTACTACAAACAGTCTCGCTAA 57.046 39.130 0.00 0.00 0.00 3.09
208 209 6.169094 AGTAGTACTACAAACAGTCTCGCTA 58.831 40.000 29.87 0.00 38.48 4.26
209 210 5.002516 AGTAGTACTACAAACAGTCTCGCT 58.997 41.667 29.87 6.33 38.48 4.93
210 211 5.294050 AGTAGTACTACAAACAGTCTCGC 57.706 43.478 29.87 3.40 38.48 5.03
223 224 6.276847 GTTCGTAGCAGGAGTAGTAGTACTA 58.723 44.000 10.28 5.90 39.78 1.82
224 225 5.115480 GTTCGTAGCAGGAGTAGTAGTACT 58.885 45.833 10.09 10.09 42.59 2.73
225 226 4.272261 GGTTCGTAGCAGGAGTAGTAGTAC 59.728 50.000 0.00 0.00 0.00 2.73
226 227 4.080919 TGGTTCGTAGCAGGAGTAGTAGTA 60.081 45.833 0.00 0.00 0.00 1.82
227 228 3.277715 GGTTCGTAGCAGGAGTAGTAGT 58.722 50.000 0.00 0.00 0.00 2.73
228 229 3.276857 TGGTTCGTAGCAGGAGTAGTAG 58.723 50.000 0.00 0.00 0.00 2.57
229 230 3.354948 TGGTTCGTAGCAGGAGTAGTA 57.645 47.619 0.00 0.00 0.00 1.82
230 231 2.211250 TGGTTCGTAGCAGGAGTAGT 57.789 50.000 0.00 0.00 0.00 2.73
231 232 2.753452 TCTTGGTTCGTAGCAGGAGTAG 59.247 50.000 1.97 0.00 33.58 2.57
232 233 2.799017 TCTTGGTTCGTAGCAGGAGTA 58.201 47.619 1.97 0.00 33.58 2.59
233 234 1.629043 TCTTGGTTCGTAGCAGGAGT 58.371 50.000 1.97 0.00 33.58 3.85
234 235 2.743636 TTCTTGGTTCGTAGCAGGAG 57.256 50.000 6.20 0.00 38.79 3.69
235 236 3.135994 GTTTTCTTGGTTCGTAGCAGGA 58.864 45.455 1.97 1.97 36.27 3.86
236 237 2.875933 TGTTTTCTTGGTTCGTAGCAGG 59.124 45.455 0.00 0.00 32.55 4.85
237 238 4.545823 TTGTTTTCTTGGTTCGTAGCAG 57.454 40.909 0.00 0.00 32.55 4.24
238 239 4.156190 TGTTTGTTTTCTTGGTTCGTAGCA 59.844 37.500 0.00 0.00 0.00 3.49
239 240 4.497966 GTGTTTGTTTTCTTGGTTCGTAGC 59.502 41.667 0.00 0.00 0.00 3.58
240 241 4.726704 CGTGTTTGTTTTCTTGGTTCGTAG 59.273 41.667 0.00 0.00 0.00 3.51
241 242 4.437121 CCGTGTTTGTTTTCTTGGTTCGTA 60.437 41.667 0.00 0.00 0.00 3.43
242 243 3.494232 CGTGTTTGTTTTCTTGGTTCGT 58.506 40.909 0.00 0.00 0.00 3.85
243 244 2.849473 CCGTGTTTGTTTTCTTGGTTCG 59.151 45.455 0.00 0.00 0.00 3.95
244 245 3.610677 CACCGTGTTTGTTTTCTTGGTTC 59.389 43.478 0.00 0.00 0.00 3.62
245 246 3.256136 TCACCGTGTTTGTTTTCTTGGTT 59.744 39.130 0.00 0.00 0.00 3.67
246 247 2.820787 TCACCGTGTTTGTTTTCTTGGT 59.179 40.909 0.00 0.00 0.00 3.67
247 248 3.175929 GTCACCGTGTTTGTTTTCTTGG 58.824 45.455 0.00 0.00 0.00 3.61
248 249 3.827625 TGTCACCGTGTTTGTTTTCTTG 58.172 40.909 0.00 0.00 0.00 3.02
249 250 4.668289 GATGTCACCGTGTTTGTTTTCTT 58.332 39.130 0.00 0.00 0.00 2.52
250 251 3.242608 CGATGTCACCGTGTTTGTTTTCT 60.243 43.478 0.00 0.00 0.00 2.52
251 252 3.033185 CGATGTCACCGTGTTTGTTTTC 58.967 45.455 0.00 0.00 0.00 2.29
252 253 2.420722 ACGATGTCACCGTGTTTGTTTT 59.579 40.909 0.00 0.00 38.97 2.43
253 254 2.011222 ACGATGTCACCGTGTTTGTTT 58.989 42.857 0.00 0.00 38.97 2.83
254 255 1.658994 ACGATGTCACCGTGTTTGTT 58.341 45.000 0.00 0.00 38.97 2.83
255 256 3.372795 ACGATGTCACCGTGTTTGT 57.627 47.368 0.00 0.00 38.97 2.83
261 262 0.039437 GTCAGTCACGATGTCACCGT 60.039 55.000 0.00 0.00 41.36 4.83
262 263 0.241213 AGTCAGTCACGATGTCACCG 59.759 55.000 0.00 0.00 0.00 4.94
263 264 1.269723 TCAGTCAGTCACGATGTCACC 59.730 52.381 0.00 0.00 0.00 4.02
264 265 2.030717 AGTCAGTCAGTCACGATGTCAC 60.031 50.000 0.00 0.00 0.00 3.67
274 275 0.039074 CCACCACGAGTCAGTCAGTC 60.039 60.000 0.00 0.00 0.00 3.51
277 278 1.739667 CACCACCACGAGTCAGTCA 59.260 57.895 0.00 0.00 0.00 3.41
311 312 9.665719 TCAAAAAGGAAAAACTAAAAGAAGCAT 57.334 25.926 0.00 0.00 0.00 3.79
407 408 2.556287 GGGACGCTTGTTCGCTTG 59.444 61.111 0.00 0.00 0.00 4.01
421 422 0.547712 CAGACAGGAAGGGAAGGGGA 60.548 60.000 0.00 0.00 0.00 4.81
423 424 1.204113 AGCAGACAGGAAGGGAAGGG 61.204 60.000 0.00 0.00 0.00 3.95
452 466 1.551329 GGAAGAGGAGTGAGGTGAGGT 60.551 57.143 0.00 0.00 0.00 3.85
457 471 0.323908 CTCGGGAAGAGGAGTGAGGT 60.324 60.000 0.00 0.00 43.20 3.85
498 515 1.530013 AAATCTGTGTGCCTGCCTGC 61.530 55.000 0.00 0.00 0.00 4.85
499 516 0.524862 GAAATCTGTGTGCCTGCCTG 59.475 55.000 0.00 0.00 0.00 4.85
500 517 0.957395 CGAAATCTGTGTGCCTGCCT 60.957 55.000 0.00 0.00 0.00 4.75
501 518 0.955428 TCGAAATCTGTGTGCCTGCC 60.955 55.000 0.00 0.00 0.00 4.85
558 583 1.455959 AGGCCGGTAGCTACAGAGG 60.456 63.158 24.75 22.62 43.05 3.69
559 584 1.787057 CGAGGCCGGTAGCTACAGAG 61.787 65.000 24.75 15.17 43.05 3.35
560 585 1.822613 CGAGGCCGGTAGCTACAGA 60.823 63.158 24.75 0.00 43.05 3.41
561 586 2.722487 CGAGGCCGGTAGCTACAG 59.278 66.667 24.75 20.43 43.05 2.74
562 587 3.524606 GCGAGGCCGGTAGCTACA 61.525 66.667 24.75 0.00 43.05 2.74
563 588 4.281947 GGCGAGGCCGGTAGCTAC 62.282 72.222 15.88 15.88 39.62 3.58
617 642 3.237741 GGATCTGGGGCCTCGGAG 61.238 72.222 21.38 1.05 0.00 4.63
637 662 2.669569 CACCCCACCAGAACAGCG 60.670 66.667 0.00 0.00 0.00 5.18
655 680 4.695231 CAGCAAGTGCGTGCCAGC 62.695 66.667 6.49 0.00 46.14 4.85
771 804 3.926616 ACCAGACACGAAGATAACCAAG 58.073 45.455 0.00 0.00 0.00 3.61
787 820 2.659016 CAGCGAGCTCCAACCAGA 59.341 61.111 8.47 0.00 0.00 3.86
794 827 4.154347 CTGGACCCAGCGAGCTCC 62.154 72.222 8.47 0.68 37.24 4.70
796 829 1.965754 GAATCTGGACCCAGCGAGCT 61.966 60.000 11.11 0.00 43.31 4.09
840 873 8.798153 CAAACAGTGAACTTTGTACAAAAGATC 58.202 33.333 20.89 17.73 32.00 2.75
848 882 3.791353 GCAGCAAACAGTGAACTTTGTAC 59.209 43.478 0.00 0.00 31.20 2.90
850 884 2.230992 TGCAGCAAACAGTGAACTTTGT 59.769 40.909 0.00 0.00 31.20 2.83
875 909 2.839425 AGAAGAAAGATCTGGCAGCTCT 59.161 45.455 14.82 14.82 35.59 4.09
881 915 2.682352 GGAGCAAGAAGAAAGATCTGGC 59.318 50.000 0.00 0.00 43.01 4.85
909 957 1.522917 AAGCAGGAGAGGGAGAGGGA 61.523 60.000 0.00 0.00 0.00 4.20
989 1073 0.670546 CTTCCACATCTTGGTCGCGT 60.671 55.000 5.77 0.00 46.97 6.01
1831 1927 2.418197 GCAATGCAAAGCCACTGATGAT 60.418 45.455 0.00 0.00 0.00 2.45
1891 1987 1.538047 GGCTTGTGCAGAGGAATCAA 58.462 50.000 0.00 0.00 41.91 2.57
1950 2046 5.815740 GTCCTTTTCTAGAAACTGTGTCACA 59.184 40.000 17.51 5.36 0.00 3.58
2034 2130 2.568956 CAGGAACATCACCTCCTTCTGA 59.431 50.000 0.00 0.00 40.22 3.27
2118 2214 1.134521 TGAGCTATCCGCCGAAACAAT 60.135 47.619 0.00 0.00 40.39 2.71
2154 2250 3.806949 AGGCAAGTTACCTGGAAATGA 57.193 42.857 0.00 0.00 35.72 2.57
2157 2253 1.960689 GCAAGGCAAGTTACCTGGAAA 59.039 47.619 0.03 0.00 37.67 3.13
2189 2285 2.993899 AGAACTCAGAATTACCGCGTTG 59.006 45.455 4.92 0.00 0.00 4.10
2221 2317 6.535150 TGTAGTGCATCTAAGAATACTGCAAC 59.465 38.462 0.00 0.00 43.73 4.17
2222 2318 6.535150 GTGTAGTGCATCTAAGAATACTGCAA 59.465 38.462 0.00 0.00 43.73 4.08
2224 2320 6.276847 AGTGTAGTGCATCTAAGAATACTGC 58.723 40.000 0.00 0.00 0.00 4.40
2225 2321 7.761704 ACAAGTGTAGTGCATCTAAGAATACTG 59.238 37.037 0.00 0.00 0.00 2.74
2226 2322 7.841956 ACAAGTGTAGTGCATCTAAGAATACT 58.158 34.615 0.00 0.00 0.00 2.12
2245 2387 5.248870 AGTTTAAGTGGCAGAAACAAGTG 57.751 39.130 17.13 0.00 35.88 3.16
2283 2429 8.682710 TCACCACATAAGCACCTAAATAAATTC 58.317 33.333 0.00 0.00 0.00 2.17
2336 2482 7.722949 ATTTTGTAATCATGACCCATTCTGT 57.277 32.000 0.00 0.00 0.00 3.41
2353 2499 9.844790 CAGCTTGATCAAGAATGTTATTTTGTA 57.155 29.630 34.43 0.00 40.79 2.41
2479 2636 0.891373 CGAGGGCTTCAGAGTTCAGA 59.109 55.000 0.00 0.00 0.00 3.27
2480 2637 0.891373 TCGAGGGCTTCAGAGTTCAG 59.109 55.000 0.00 0.00 0.00 3.02
2481 2638 1.273606 CTTCGAGGGCTTCAGAGTTCA 59.726 52.381 0.00 0.00 0.00 3.18
2482 2639 1.273886 ACTTCGAGGGCTTCAGAGTTC 59.726 52.381 0.00 0.00 0.00 3.01
2483 2640 1.343069 ACTTCGAGGGCTTCAGAGTT 58.657 50.000 0.00 0.00 0.00 3.01
2484 2641 1.343069 AACTTCGAGGGCTTCAGAGT 58.657 50.000 0.00 0.00 0.00 3.24
2485 2642 3.594603 TTAACTTCGAGGGCTTCAGAG 57.405 47.619 0.00 0.00 0.00 3.35
2497 2654 5.563751 CGTCCATTTGTCAACATTAACTTCG 59.436 40.000 0.00 0.00 0.00 3.79
2498 2655 6.577427 GTCGTCCATTTGTCAACATTAACTTC 59.423 38.462 0.00 0.00 0.00 3.01
2521 2684 3.391049 GACGGCCTACTTTGGATATGTC 58.609 50.000 0.00 0.00 0.00 3.06
2571 2737 7.308408 CCCAAGTGTCTGCTATTCATGATATTG 60.308 40.741 0.00 0.00 0.00 1.90
2631 2797 5.240844 GCCAACTAAGTGACCATAACAAACT 59.759 40.000 0.00 0.00 0.00 2.66
2634 2800 4.759693 CAGCCAACTAAGTGACCATAACAA 59.240 41.667 0.00 0.00 0.00 2.83
2876 3059 4.406972 TCCATCTCGGAGAACATCTTCATT 59.593 41.667 12.40 0.00 39.64 2.57
3057 3240 0.529119 GATTATCGCCGACGGTTGGT 60.529 55.000 16.73 7.52 40.63 3.67
3094 3277 1.533731 CCGACCAAACACACGCTAAAT 59.466 47.619 0.00 0.00 0.00 1.40
3126 3309 1.158007 AGGGGAAGAACACCATTGGT 58.842 50.000 1.37 1.37 46.31 3.67
3233 3416 4.991687 GGTACATTTGCCTCTAGAGCATAC 59.008 45.833 14.73 13.23 40.59 2.39
3251 3435 2.566529 CGCTCGCTCACAGGTACA 59.433 61.111 0.00 0.00 0.00 2.90
3252 3436 2.881352 GCGCTCGCTCACAGGTAC 60.881 66.667 0.00 0.00 38.26 3.34
3253 3437 4.129737 GGCGCTCGCTCACAGGTA 62.130 66.667 7.64 0.00 41.60 3.08
3255 3439 4.749310 AAGGCGCTCGCTCACAGG 62.749 66.667 7.64 0.00 41.60 4.00
3256 3440 3.485431 CAAGGCGCTCGCTCACAG 61.485 66.667 7.64 0.00 41.60 3.66
3257 3441 4.299547 ACAAGGCGCTCGCTCACA 62.300 61.111 7.64 0.00 41.60 3.58
3258 3442 3.782244 CACAAGGCGCTCGCTCAC 61.782 66.667 7.64 0.00 41.60 3.51
3377 3565 0.796312 GAAAGAAATCGTGCTCGGCA 59.204 50.000 8.49 0.00 37.69 5.69
3393 3581 3.122297 CAAAGCCGCAACATTTCAGAAA 58.878 40.909 0.00 0.00 0.00 2.52
3407 3595 4.358851 TCAAAACACAAGAATCAAAGCCG 58.641 39.130 0.00 0.00 0.00 5.52
3442 3630 3.492482 GGTTTTGTTTCCCACATGGTCAG 60.492 47.826 0.00 0.00 34.43 3.51
3464 3653 9.589111 CATCTAGGATTGACATCATTCAGATAG 57.411 37.037 6.21 5.44 34.43 2.08
3716 4004 8.511321 CAAATTAATAAGCTGACAGTGGTGTAA 58.489 33.333 3.99 0.00 36.88 2.41
3719 4007 5.801947 GCAAATTAATAAGCTGACAGTGGTG 59.198 40.000 3.99 0.00 0.00 4.17
3721 4009 5.953183 TGCAAATTAATAAGCTGACAGTGG 58.047 37.500 3.99 0.00 0.00 4.00
3734 4022 4.680440 GCCGATGGGTTCTTGCAAATTAAT 60.680 41.667 0.00 0.00 34.97 1.40
3741 4029 2.361104 GGCCGATGGGTTCTTGCA 60.361 61.111 0.00 0.00 34.97 4.08
3743 4031 1.185315 ATTTGGCCGATGGGTTCTTG 58.815 50.000 0.00 0.00 34.97 3.02
3758 4048 8.084073 TCTGTTCTTTGCCTGATTCTTAATTTG 58.916 33.333 0.00 0.00 0.00 2.32
3785 4075 4.207019 CGTTTTTCATTTTCCAGAGTGTGC 59.793 41.667 0.00 0.00 0.00 4.57
3786 4076 5.339990 ACGTTTTTCATTTTCCAGAGTGTG 58.660 37.500 0.00 0.00 0.00 3.82
3790 4080 5.687285 CCTTGACGTTTTTCATTTTCCAGAG 59.313 40.000 0.00 0.00 0.00 3.35
3792 4082 4.744631 CCCTTGACGTTTTTCATTTTCCAG 59.255 41.667 0.00 0.00 0.00 3.86
3810 4100 7.643371 GCAAATTGTAATTTTGTTGAACCCTTG 59.357 33.333 0.04 0.00 36.52 3.61
3846 4137 4.043310 ACCATGACCTGATTTTCTTCCTGA 59.957 41.667 0.00 0.00 0.00 3.86
3918 6558 5.488919 TCCTCTTCTTGACATCCCAAGTAAT 59.511 40.000 0.00 0.00 42.95 1.89
3919 6559 4.844085 TCCTCTTCTTGACATCCCAAGTAA 59.156 41.667 0.00 0.00 42.95 2.24
3999 6647 7.434201 ACCTAATCCTATGATCCATACTCCAT 58.566 38.462 0.00 0.00 0.00 3.41
4003 6651 8.125081 TGATGACCTAATCCTATGATCCATACT 58.875 37.037 0.00 0.00 0.00 2.12
4004 6652 8.311395 TGATGACCTAATCCTATGATCCATAC 57.689 38.462 0.00 0.00 0.00 2.39
4005 6653 8.915813 TTGATGACCTAATCCTATGATCCATA 57.084 34.615 0.00 0.00 0.00 2.74
4006 6654 7.819521 TTGATGACCTAATCCTATGATCCAT 57.180 36.000 0.00 0.00 0.00 3.41
4007 6655 7.631510 TTTGATGACCTAATCCTATGATCCA 57.368 36.000 0.00 0.00 0.00 3.41
4008 6656 8.954350 CAATTTGATGACCTAATCCTATGATCC 58.046 37.037 0.00 0.00 0.00 3.36
4009 6657 8.954350 CCAATTTGATGACCTAATCCTATGATC 58.046 37.037 0.00 0.00 0.00 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.