Multiple sequence alignment - TraesCS1A01G382300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G382300 chr1A 100.000 2847 0 0 1 2847 552977927 552980773 0.000000e+00 5258.0
1 TraesCS1A01G382300 chr1A 100.000 1430 0 0 3109 4538 552981035 552982464 0.000000e+00 2641.0
2 TraesCS1A01G382300 chr1A 87.633 1698 117 33 1 1648 553048952 553050606 0.000000e+00 1886.0
3 TraesCS1A01G382300 chr1A 91.415 862 50 11 3430 4278 553052554 553053404 0.000000e+00 1160.0
4 TraesCS1A01G382300 chr1A 84.911 676 45 17 1972 2604 553051015 553051676 8.280000e-177 630.0
5 TraesCS1A01G382300 chr1A 88.643 361 28 4 1605 1964 553050604 553050952 1.170000e-115 427.0
6 TraesCS1A01G382300 chr1A 87.654 243 27 3 4283 4525 553060722 553060961 3.460000e-71 279.0
7 TraesCS1A01G382300 chr1A 91.837 98 7 1 3339 3436 553052403 553052499 7.920000e-28 135.0
8 TraesCS1A01G382300 chr1A 92.683 41 2 1 335 374 571267705 571267665 1.760000e-04 58.4
9 TraesCS1A01G382300 chr1B 87.316 2452 194 54 415 2793 634995191 634997598 0.000000e+00 2697.0
10 TraesCS1A01G382300 chr1B 87.094 2464 183 53 415 2804 635102551 635104953 0.000000e+00 2663.0
11 TraesCS1A01G382300 chr1B 90.706 1474 100 15 831 2290 634778884 634780334 0.000000e+00 1929.0
12 TraesCS1A01G382300 chr1B 90.135 517 40 6 3430 3938 634781457 634781970 0.000000e+00 662.0
13 TraesCS1A01G382300 chr1B 87.395 476 39 8 2345 2808 634780474 634780940 1.120000e-145 527.0
14 TraesCS1A01G382300 chr1B 86.804 485 39 5 4076 4538 635118789 635119270 6.730000e-143 518.0
15 TraesCS1A01G382300 chr1B 88.187 364 32 5 3430 3784 635116231 635116592 1.510000e-114 424.0
16 TraesCS1A01G382300 chr1B 95.402 174 6 1 3796 3967 635117878 635118051 4.470000e-70 276.0
17 TraesCS1A01G382300 chr1B 81.657 338 43 15 477 805 634778563 634778890 3.480000e-66 263.0
18 TraesCS1A01G382300 chr1D 87.910 1249 83 25 1605 2799 461762728 461763962 0.000000e+00 1408.0
19 TraesCS1A01G382300 chr1D 92.936 722 39 8 932 1642 461762004 461762724 0.000000e+00 1040.0
20 TraesCS1A01G382300 chr1D 91.522 519 31 8 3430 3938 461764727 461765242 0.000000e+00 702.0
21 TraesCS1A01G382300 chr1D 85.086 523 49 13 415 920 461761313 461761823 1.460000e-139 507.0
22 TraesCS1A01G382300 chr1D 79.612 309 26 19 3146 3436 461764383 461764672 2.160000e-43 187.0
23 TraesCS1A01G382300 chr1D 92.683 41 2 1 335 374 475488932 475488892 1.760000e-04 58.4
24 TraesCS1A01G382300 chr2D 86.241 1301 113 16 1594 2847 430468266 430466985 0.000000e+00 1351.0
25 TraesCS1A01G382300 chr2D 81.078 872 91 36 3446 4276 430466476 430465638 2.980000e-176 628.0
26 TraesCS1A01G382300 chr2D 79.753 810 74 24 806 1584 430469110 430468360 5.240000e-139 505.0
27 TraesCS1A01G382300 chr2D 84.099 283 25 8 3171 3437 430466822 430466544 5.830000e-64 255.0
28 TraesCS1A01G382300 chr2D 84.615 143 18 4 4369 4507 250627574 250627716 6.120000e-29 139.0
29 TraesCS1A01G382300 chr2D 83.516 91 14 1 4354 4444 624563375 624563286 2.910000e-12 84.2
30 TraesCS1A01G382300 chr2A 85.242 1301 125 20 1594 2847 555817847 555819127 0.000000e+00 1277.0
31 TraesCS1A01G382300 chr2A 80.527 873 93 37 3431 4262 555819612 555820448 2.340000e-167 599.0
32 TraesCS1A01G382300 chr2A 81.353 665 62 20 947 1584 555817124 555817753 6.830000e-133 484.0
33 TraesCS1A01G382300 chr2A 85.425 247 18 6 3171 3401 555819287 555819531 1.630000e-59 241.0
34 TraesCS1A01G382300 chr2A 97.143 35 1 0 3946 3980 23641836 23641802 4.900000e-05 60.2
35 TraesCS1A01G382300 chr2B 86.544 758 85 9 1594 2345 508367971 508367225 0.000000e+00 819.0
36 TraesCS1A01G382300 chr2B 83.025 866 92 33 3430 4271 508366245 508365411 0.000000e+00 734.0
37 TraesCS1A01G382300 chr2B 87.415 294 14 6 2386 2662 508367131 508366844 2.630000e-82 316.0
38 TraesCS1A01G382300 chr2B 85.197 304 27 7 3146 3433 508366604 508366303 3.430000e-76 296.0
39 TraesCS1A01G382300 chr2B 78.384 495 39 23 827 1290 508368980 508368523 4.500000e-65 259.0
40 TraesCS1A01G382300 chr2B 83.221 149 20 3 4378 4525 278440450 278440306 1.020000e-26 132.0
41 TraesCS1A01G382300 chr2B 95.652 69 3 0 1 69 799140244 799140176 1.330000e-20 111.0
42 TraesCS1A01G382300 chr6B 93.264 193 13 0 3212 3404 400147778 400147970 7.430000e-73 285.0
43 TraesCS1A01G382300 chr6B 90.698 43 4 0 333 375 288809846 288809804 1.760000e-04 58.4
44 TraesCS1A01G382300 chr7D 87.151 179 22 1 4359 4537 541964152 541963975 7.700000e-48 202.0
45 TraesCS1A01G382300 chr3A 86.228 167 21 2 4360 4525 497647702 497647867 3.610000e-41 180.0
46 TraesCS1A01G382300 chr4B 81.347 193 35 1 130 321 113378113 113378305 6.080000e-34 156.0
47 TraesCS1A01G382300 chr4B 86.154 130 16 2 4409 4537 619362287 619362159 6.120000e-29 139.0
48 TraesCS1A01G382300 chr4B 79.452 146 27 3 4350 4495 21210075 21209933 2.890000e-17 100.0
49 TraesCS1A01G382300 chr4A 82.609 184 24 7 4357 4536 674435034 674434855 6.080000e-34 156.0
50 TraesCS1A01G382300 chr7A 94.203 69 4 0 1 69 80345180 80345112 6.210000e-19 106.0
51 TraesCS1A01G382300 chr7A 94.203 69 4 0 1 69 91002598 91002666 6.210000e-19 106.0
52 TraesCS1A01G382300 chr7A 100.000 31 0 0 3950 3980 163378029 163378059 1.760000e-04 58.4
53 TraesCS1A01G382300 chr5B 91.304 69 6 0 1 69 450669001 450668933 1.340000e-15 95.3
54 TraesCS1A01G382300 chr7B 90.476 42 4 0 337 378 44884753 44884712 6.340000e-04 56.5
55 TraesCS1A01G382300 chr6D 89.130 46 4 1 330 375 158069719 158069763 6.340000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G382300 chr1A 552977927 552982464 4537 False 3949.50 5258 100.00000 1 4538 2 chr1A.!!$F2 4537
1 TraesCS1A01G382300 chr1A 553048952 553053404 4452 False 847.60 1886 88.88780 1 4278 5 chr1A.!!$F3 4277
2 TraesCS1A01G382300 chr1B 634995191 634997598 2407 False 2697.00 2697 87.31600 415 2793 1 chr1B.!!$F1 2378
3 TraesCS1A01G382300 chr1B 635102551 635104953 2402 False 2663.00 2663 87.09400 415 2804 1 chr1B.!!$F2 2389
4 TraesCS1A01G382300 chr1B 634778563 634781970 3407 False 845.25 1929 87.47325 477 3938 4 chr1B.!!$F3 3461
5 TraesCS1A01G382300 chr1B 635116231 635119270 3039 False 406.00 518 90.13100 3430 4538 3 chr1B.!!$F4 1108
6 TraesCS1A01G382300 chr1D 461761313 461765242 3929 False 768.80 1408 87.41320 415 3938 5 chr1D.!!$F1 3523
7 TraesCS1A01G382300 chr2D 430465638 430469110 3472 True 684.75 1351 82.79275 806 4276 4 chr2D.!!$R2 3470
8 TraesCS1A01G382300 chr2A 555817124 555820448 3324 False 650.25 1277 83.13675 947 4262 4 chr2A.!!$F1 3315
9 TraesCS1A01G382300 chr2B 508365411 508368980 3569 True 484.80 819 84.11300 827 4271 5 chr2B.!!$R3 3444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 231 0.178975 AATGGGGTGGCTCACGAAAA 60.179 50.0 0.0 0.0 34.83 2.29 F
829 879 0.249447 TGAAGAGTGTGGTGACTGCG 60.249 55.0 0.0 0.0 0.00 5.18 F
1698 2220 0.107643 GGCTGCTCCATAAGGTCCTC 59.892 60.0 0.0 0.0 35.89 3.71 F
1785 2307 0.688487 AATGCATGGCTTTGGTTGCT 59.312 45.0 0.0 0.0 36.10 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1350 1787 0.914644 TGAGGGCCAGAGATTTGGAG 59.085 55.000 6.18 0.0 40.87 3.86 R
2201 2811 1.228245 ACGGGCCATGGATATGCAC 60.228 57.895 18.40 0.0 32.79 4.57 R
3111 3936 1.122019 AAGCACTCCTTCCGTCTGGT 61.122 55.000 0.00 0.0 36.30 4.00 R
3768 5015 1.078072 TGTTCGCCCAACACACACT 60.078 52.632 0.00 0.0 40.29 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.592351 AGCATGGATAGCACTAGTTCAGAT 59.408 41.667 0.00 0.00 0.00 2.90
77 78 1.608590 AGAGTGCAAATGGTCAAACCG 59.391 47.619 0.00 0.00 42.58 4.44
83 84 2.550606 GCAAATGGTCAAACCGTAGTGA 59.449 45.455 6.26 0.00 42.58 3.41
91 92 5.125739 TGGTCAAACCGTAGTGATTTTGTTT 59.874 36.000 0.00 0.00 42.58 2.83
100 101 6.416750 CCGTAGTGATTTTGTTTGTTCTTTCC 59.583 38.462 0.00 0.00 0.00 3.13
109 110 6.419980 TTGTTTGTTCTTTCCTTGCAAATG 57.580 33.333 0.00 0.00 32.71 2.32
118 119 5.769662 TCTTTCCTTGCAAATGAGAAGCTTA 59.230 36.000 0.00 0.00 0.00 3.09
119 120 5.633830 TTCCTTGCAAATGAGAAGCTTAG 57.366 39.130 0.00 0.00 0.00 2.18
120 121 4.910195 TCCTTGCAAATGAGAAGCTTAGA 58.090 39.130 0.00 0.00 0.00 2.10
121 122 5.503927 TCCTTGCAAATGAGAAGCTTAGAT 58.496 37.500 0.00 0.00 0.00 1.98
122 123 5.587844 TCCTTGCAAATGAGAAGCTTAGATC 59.412 40.000 0.00 0.00 0.00 2.75
123 124 5.589452 CCTTGCAAATGAGAAGCTTAGATCT 59.411 40.000 0.00 0.00 0.00 2.75
124 125 6.432607 TTGCAAATGAGAAGCTTAGATCTG 57.567 37.500 5.18 0.00 0.00 2.90
125 126 5.737860 TGCAAATGAGAAGCTTAGATCTGA 58.262 37.500 5.18 0.00 0.00 3.27
126 127 6.175471 TGCAAATGAGAAGCTTAGATCTGAA 58.825 36.000 5.18 0.00 0.00 3.02
127 128 6.656270 TGCAAATGAGAAGCTTAGATCTGAAA 59.344 34.615 5.18 0.00 0.00 2.69
151 166 8.512966 AAAAAGAAGAAGCCTTGAGTATATCC 57.487 34.615 0.00 0.00 31.62 2.59
167 182 8.756927 TGAGTATATCCAGGATGATCAAGAATC 58.243 37.037 12.80 0.00 39.69 2.52
216 231 0.178975 AATGGGGTGGCTCACGAAAA 60.179 50.000 0.00 0.00 34.83 2.29
271 286 9.739276 AATGTCATTCTTCTTAATAGTGTTCCA 57.261 29.630 0.00 0.00 0.00 3.53
274 289 7.606456 GTCATTCTTCTTAATAGTGTTCCACCA 59.394 37.037 0.00 0.00 34.49 4.17
277 292 6.414732 TCTTCTTAATAGTGTTCCACCATGG 58.585 40.000 11.19 11.19 39.43 3.66
327 342 9.847706 TTGTAATAATCTTTTTAATTCTGCGCA 57.152 25.926 10.98 10.98 0.00 6.09
328 343 9.847706 TGTAATAATCTTTTTAATTCTGCGCAA 57.152 25.926 13.05 0.00 0.00 4.85
374 392 9.942850 AATATATGGGGTGTTTTTCAGAAAAAG 57.057 29.630 19.46 0.00 40.71 2.27
388 406 4.521639 TCAGAAAAAGATGCAGCTCATGTT 59.478 37.500 4.22 0.00 40.00 2.71
403 421 5.591877 AGCTCATGTTGATGATCCCTAAAAC 59.408 40.000 0.00 0.00 37.97 2.43
413 432 4.062293 TGATCCCTAAAACACAAGACACG 58.938 43.478 0.00 0.00 0.00 4.49
460 479 2.654863 GATCCGACCATCCCACAAAAT 58.345 47.619 0.00 0.00 0.00 1.82
461 480 3.742954 CGATCCGACCATCCCACAAAATA 60.743 47.826 0.00 0.00 0.00 1.40
463 482 4.035612 TCCGACCATCCCACAAAATAAA 57.964 40.909 0.00 0.00 0.00 1.40
489 510 4.823790 AAAACTACGTCAACCCAATCAC 57.176 40.909 0.00 0.00 0.00 3.06
500 522 5.422012 GTCAACCCAATCACCCTAAAATCAT 59.578 40.000 0.00 0.00 0.00 2.45
513 537 5.154932 CCTAAAATCATCTACGGACTAGCG 58.845 45.833 0.00 0.00 0.00 4.26
645 671 4.706842 AAACTAAGGAGCCTTGTTGAGA 57.293 40.909 11.94 0.00 37.47 3.27
688 726 5.376625 TCTTGAAGAAACCAAGTAGCATGT 58.623 37.500 0.00 0.00 41.18 3.21
715 761 1.673033 CCAATCTCTCGCCGTTTCACT 60.673 52.381 0.00 0.00 0.00 3.41
716 762 1.391485 CAATCTCTCGCCGTTTCACTG 59.609 52.381 0.00 0.00 0.00 3.66
753 800 4.292599 CAACATGACAATTGTGACACCAG 58.707 43.478 17.58 5.42 32.21 4.00
779 826 2.816087 AGCACCTTCAAATGTAGTGCAG 59.184 45.455 15.00 0.00 38.63 4.41
829 879 0.249447 TGAAGAGTGTGGTGACTGCG 60.249 55.000 0.00 0.00 0.00 5.18
920 970 5.642063 TGAAGTGGAAAATAGTTGACCGATC 59.358 40.000 0.00 0.00 0.00 3.69
921 971 4.181578 AGTGGAAAATAGTTGACCGATCG 58.818 43.478 8.51 8.51 0.00 3.69
922 972 4.081862 AGTGGAAAATAGTTGACCGATCGA 60.082 41.667 18.66 0.00 0.00 3.59
923 973 4.809426 GTGGAAAATAGTTGACCGATCGAT 59.191 41.667 18.66 0.00 0.00 3.59
924 974 5.981315 GTGGAAAATAGTTGACCGATCGATA 59.019 40.000 18.66 0.00 0.00 2.92
925 975 6.477688 GTGGAAAATAGTTGACCGATCGATAA 59.522 38.462 18.66 5.62 0.00 1.75
926 976 7.010738 GTGGAAAATAGTTGACCGATCGATAAA 59.989 37.037 18.66 0.00 0.00 1.40
927 977 7.010738 TGGAAAATAGTTGACCGATCGATAAAC 59.989 37.037 18.66 9.58 0.00 2.01
928 978 6.839820 AAATAGTTGACCGATCGATAAACC 57.160 37.500 18.66 0.00 0.00 3.27
929 979 2.805845 AGTTGACCGATCGATAAACCG 58.194 47.619 18.66 0.00 0.00 4.44
998 1226 1.953138 GATCGCATCGCAGTCCAGG 60.953 63.158 0.00 0.00 0.00 4.45
1146 1395 2.064581 CCCTTCCTTCCCCGACGAT 61.065 63.158 0.00 0.00 0.00 3.73
1188 1455 3.678717 CTACGTCACCGGCCACTCG 62.679 68.421 0.00 2.15 38.78 4.18
1431 1869 0.396417 CCGACCTCTCCATCCACTCT 60.396 60.000 0.00 0.00 0.00 3.24
1514 1952 2.135581 ACGTGGGTCCTCGTTTCCA 61.136 57.895 10.78 0.00 42.31 3.53
1607 2129 2.359230 AGAGCAAGCAACCGAGGC 60.359 61.111 0.00 0.00 0.00 4.70
1669 2191 3.535962 CTCAGGAGGCGGAGGAGC 61.536 72.222 0.00 0.00 0.00 4.70
1698 2220 0.107643 GGCTGCTCCATAAGGTCCTC 59.892 60.000 0.00 0.00 35.89 3.71
1699 2221 0.107643 GCTGCTCCATAAGGTCCTCC 59.892 60.000 0.00 0.00 35.89 4.30
1728 2250 4.508492 TCAATGCTTTGCTTGATGTGTTTG 59.492 37.500 7.44 0.00 32.61 2.93
1732 2254 3.618150 GCTTTGCTTGATGTGTTTGTGTT 59.382 39.130 0.00 0.00 0.00 3.32
1773 2295 1.404047 GGGTCCGTGGAAAAATGCATG 60.404 52.381 0.00 0.00 0.00 4.06
1784 2306 1.525941 AAATGCATGGCTTTGGTTGC 58.474 45.000 0.00 0.00 35.67 4.17
1785 2307 0.688487 AATGCATGGCTTTGGTTGCT 59.312 45.000 0.00 0.00 36.10 3.91
1789 2311 1.477700 GCATGGCTTTGGTTGCTCATA 59.522 47.619 0.00 0.00 32.41 2.15
1816 2338 8.230486 GGTTATTAGACTGACATGAAACAACAG 58.770 37.037 0.00 0.00 35.14 3.16
1828 2351 3.119173 TGAAACAACAGTTTGCAAGGGAG 60.119 43.478 0.00 0.00 35.71 4.30
1900 2423 8.410673 TTTTAGTTGGCAAACTGGATATAACA 57.589 30.769 17.16 0.00 46.30 2.41
1901 2424 8.410673 TTTAGTTGGCAAACTGGATATAACAA 57.589 30.769 17.16 0.00 46.30 2.83
1902 2425 6.267496 AGTTGGCAAACTGGATATAACAAC 57.733 37.500 5.44 0.00 45.12 3.32
1969 2502 7.680730 AGGTAGAGTTGTCATGTGAAATAGTT 58.319 34.615 0.00 0.00 0.00 2.24
1970 2503 8.812972 AGGTAGAGTTGTCATGTGAAATAGTTA 58.187 33.333 0.00 0.00 0.00 2.24
2064 2662 3.976942 CCAACTTCTTTTTGCGTGATCTG 59.023 43.478 0.00 0.00 0.00 2.90
2089 2687 7.652909 TGTTTTTGCCTGTTTAAATCAGATCTG 59.347 33.333 17.07 17.07 35.20 2.90
2090 2688 5.902613 TTGCCTGTTTAAATCAGATCTGG 57.097 39.130 22.42 3.51 35.20 3.86
2092 2690 4.701651 TGCCTGTTTAAATCAGATCTGGTG 59.298 41.667 22.42 2.17 35.20 4.17
2160 2762 9.786105 CATAAATTGTGTGAACAATGTAGCATA 57.214 29.630 4.94 0.00 39.92 3.14
2181 2788 7.177216 AGCATATGTTTGTTCAAAAGAGATGGA 59.823 33.333 4.29 0.00 0.00 3.41
2186 2793 8.408043 TGTTTGTTCAAAAGAGATGGATATGT 57.592 30.769 0.00 0.00 0.00 2.29
2187 2794 9.513906 TGTTTGTTCAAAAGAGATGGATATGTA 57.486 29.630 0.00 0.00 0.00 2.29
2201 2811 9.557061 AGATGGATATGTAATATATGCTTGCAG 57.443 33.333 0.87 0.00 40.26 4.41
2291 2962 7.332213 TGCAGCATTTATAGATTTTGCTACA 57.668 32.000 0.00 0.00 41.47 2.74
2312 2983 7.970061 GCTACATTTTCTTTAATCTGCACATGA 59.030 33.333 0.00 0.00 0.00 3.07
2316 2987 9.791820 CATTTTCTTTAATCTGCACATGACATA 57.208 29.630 0.00 0.00 0.00 2.29
2469 3205 7.514784 TCAAGATCATTTTGATGTCTTGTGT 57.485 32.000 19.22 0.00 38.65 3.72
2583 3324 8.237267 ACAAGCTATGCTATTTTGTGAGTTTAC 58.763 33.333 0.00 0.00 38.25 2.01
2584 3325 7.921786 AGCTATGCTATTTTGTGAGTTTACA 57.078 32.000 0.00 0.00 36.99 2.41
2666 3489 9.202273 TGAAGTGTGCATTAATTTTGTATTTCC 57.798 29.630 0.00 0.00 0.00 3.13
2674 3497 8.424133 GCATTAATTTTGTATTTCCTCCATCCT 58.576 33.333 0.00 0.00 0.00 3.24
2688 3511 3.395941 CTCCATCCTGGTTTATTAGGCCT 59.604 47.826 11.78 11.78 39.03 5.19
2702 3525 2.443958 AGGCCTCCTCTTATTTTGGC 57.556 50.000 0.00 0.00 39.61 4.52
2724 3547 7.098477 TGGCTCAAAATTTGACCATAGATTTG 58.902 34.615 18.97 3.87 36.56 2.32
2727 3550 7.276438 GCTCAAAATTTGACCATAGATTTGACC 59.724 37.037 4.03 0.00 35.46 4.02
2777 3601 5.806366 AAAATATACCGTGGAAAACCTCG 57.194 39.130 0.00 0.00 0.00 4.63
2788 3612 4.390909 GTGGAAAACCTCGTTCGAATACAT 59.609 41.667 0.00 0.00 0.00 2.29
2795 3619 5.529791 ACCTCGTTCGAATACATATCCAAG 58.470 41.667 0.00 0.00 0.00 3.61
2800 3624 7.358066 TCGTTCGAATACATATCCAAGAGTAC 58.642 38.462 0.00 0.00 0.00 2.73
2803 3627 7.818997 TCGAATACATATCCAAGAGTACACT 57.181 36.000 0.00 0.00 0.00 3.55
2809 3633 9.959721 ATACATATCCAAGAGTACACTTTTTGT 57.040 29.630 2.49 4.24 42.84 2.83
2811 3635 9.436957 ACATATCCAAGAGTACACTTTTTGTAG 57.563 33.333 2.49 0.00 41.58 2.74
3127 3952 2.256117 AAAACCAGACGGAAGGAGTG 57.744 50.000 0.00 0.00 35.59 3.51
3169 4216 6.489469 TTTTATTGCTTTATATTGCGTGCG 57.511 33.333 0.00 0.00 0.00 5.34
3222 4279 6.980978 GCTGTTGATCTTTGCTAGTGTATAGA 59.019 38.462 0.00 0.00 0.00 1.98
3298 4371 6.207691 ACCATTATCCATGTAGTTTTGCAC 57.792 37.500 0.00 0.00 0.00 4.57
3340 4489 9.102757 GAACTAGAATGAGACATTTATGCTGAA 57.897 33.333 0.00 0.00 0.00 3.02
3376 4525 9.965824 ATTGTTTACAGATTCAGGTTTTAACAG 57.034 29.630 0.00 0.00 0.00 3.16
3402 4551 7.363268 GGTCTTCAGATTTAACAGGATGCATTT 60.363 37.037 0.00 0.00 42.53 2.32
3403 4552 8.031277 GTCTTCAGATTTAACAGGATGCATTTT 58.969 33.333 0.00 0.00 42.53 1.82
3433 4643 8.867112 ATGCTATTCTTATCATTTTGCTGTTG 57.133 30.769 0.00 0.00 0.00 3.33
3520 4736 9.997172 ATAAGAACTTATTGGGAAGGAGAAAAT 57.003 29.630 1.76 0.00 32.21 1.82
3526 4742 5.830799 ATTGGGAAGGAGAAAATTTGCTT 57.169 34.783 0.00 0.00 0.00 3.91
3569 4802 8.196378 AGATCTTGTTCTCAGTAAGGTAAACT 57.804 34.615 0.00 0.00 0.00 2.66
3615 4855 9.917129 TTTCATACGTGTAACTAAATTCTCTCA 57.083 29.630 0.00 0.00 31.75 3.27
3618 4858 9.516314 CATACGTGTAACTAAATTCTCTCATGA 57.484 33.333 0.00 0.00 31.75 3.07
3715 4958 7.815840 TGGTTGAACTTGAATGATTCTACAA 57.184 32.000 6.73 3.60 32.09 2.41
3768 5015 9.255304 GTTTGTATCTTATTTGTTTGCTTCCAA 57.745 29.630 0.00 0.00 0.00 3.53
3849 6395 9.968870 GTATTCTTGTTCTTAGGGAGTAGTATG 57.031 37.037 0.00 0.00 0.00 2.39
3976 6526 2.434336 ACGCACATACACTCACCCATAT 59.566 45.455 0.00 0.00 0.00 1.78
4021 6571 1.202879 TCACATTCACTCCCCAACACC 60.203 52.381 0.00 0.00 0.00 4.16
4025 7055 2.112279 TTCACTCCCCAACACCTAGT 57.888 50.000 0.00 0.00 0.00 2.57
4035 7065 5.786457 TCCCCAACACCTAGTAGATTGTAAA 59.214 40.000 0.00 0.00 0.00 2.01
4041 7071 5.875359 ACACCTAGTAGATTGTAAAGCTTGC 59.125 40.000 0.00 0.00 41.66 4.01
4074 7253 0.879090 GGTGACCCGTGATTTTGACC 59.121 55.000 0.00 0.00 0.00 4.02
4111 7304 6.158598 GCATGTTTCCATTTCTTAAAGCTGA 58.841 36.000 0.00 0.00 0.00 4.26
4114 7307 9.211485 CATGTTTCCATTTCTTAAAGCTGATTT 57.789 29.630 0.00 0.00 34.72 2.17
4153 7346 0.251165 TTTTGCAGGGTGTAGAGGCC 60.251 55.000 0.00 0.00 0.00 5.19
4154 7347 1.422977 TTTGCAGGGTGTAGAGGCCA 61.423 55.000 5.01 0.00 0.00 5.36
4197 7390 0.691078 AAGCCGGGATCCTTGAGCTA 60.691 55.000 12.58 0.00 0.00 3.32
4200 7393 1.205893 GCCGGGATCCTTGAGCTATAG 59.794 57.143 12.58 0.00 0.00 1.31
4216 7409 4.187694 GCTATAGCTTGAGTTGAAGTGCT 58.812 43.478 17.75 0.00 38.21 4.40
4256 7451 1.259609 TGGCTGGATGCTTTTTGGAG 58.740 50.000 0.00 0.00 42.39 3.86
4292 7508 3.118482 TGCTTTTTGGTTCAAGGATGCAA 60.118 39.130 0.00 0.00 0.00 4.08
4295 7511 5.008911 GCTTTTTGGTTCAAGGATGCAAAAT 59.991 36.000 0.00 0.00 31.00 1.82
4310 7526 8.808092 AGGATGCAAAATCTAGGATAGTACTAC 58.192 37.037 4.31 0.00 40.38 2.73
4313 7529 8.548880 TGCAAAATCTAGGATAGTACTACCTT 57.451 34.615 21.56 6.72 40.38 3.50
4353 7569 6.016777 GGAAATGATAAATCCGAATGACAGCT 60.017 38.462 0.00 0.00 0.00 4.24
4376 7592 3.296322 TTTGACCATGGCAAATCGAAC 57.704 42.857 22.50 3.11 30.87 3.95
4384 7600 4.681942 CCATGGCAAATCGAACGTTTTTAA 59.318 37.500 0.46 0.00 0.00 1.52
4404 7620 3.932545 ATGGCAATTTTAGTTGACGCA 57.067 38.095 0.00 0.00 40.06 5.24
4406 7622 4.046938 TGGCAATTTTAGTTGACGCAAA 57.953 36.364 0.00 0.00 40.06 3.68
4411 7627 6.292596 GGCAATTTTAGTTGACGCAAAAATGA 60.293 34.615 12.28 0.00 33.16 2.57
4416 7632 4.370364 AGTTGACGCAAAAATGACAAGT 57.630 36.364 0.00 0.00 0.00 3.16
4431 7647 3.181491 TGACAAGTTTAGTTGGCAAGCAC 60.181 43.478 0.00 0.00 42.70 4.40
4434 7650 0.663269 GTTTAGTTGGCAAGCACGGC 60.663 55.000 0.00 0.00 0.00 5.68
4442 7658 1.290009 GCAAGCACGGCAATTTCCT 59.710 52.632 0.00 0.00 0.00 3.36
4443 7659 1.010419 GCAAGCACGGCAATTTCCTG 61.010 55.000 0.00 0.00 0.00 3.86
4444 7660 0.597568 CAAGCACGGCAATTTCCTGA 59.402 50.000 0.00 0.00 0.00 3.86
4469 7685 5.592104 AAAAACAAACTGAGGACGGATTT 57.408 34.783 0.00 0.00 0.00 2.17
4470 7686 4.568152 AAACAAACTGAGGACGGATTTG 57.432 40.909 0.00 0.00 36.54 2.32
4471 7687 1.880027 ACAAACTGAGGACGGATTTGC 59.120 47.619 0.00 0.00 34.34 3.68
4472 7688 1.200020 CAAACTGAGGACGGATTTGCC 59.800 52.381 0.00 0.00 0.00 4.52
4493 7709 4.377738 GCCGTACTTACCAACTAAACTTGC 60.378 45.833 0.00 0.00 0.00 4.01
4503 7719 4.202202 CCAACTAAACTTGCCATGGTGAAA 60.202 41.667 14.67 5.09 0.00 2.69
4530 7746 8.426881 AATGTAAATTACCACAAAAAGCGTTT 57.573 26.923 0.18 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.144478 CCATTTGCACTCTTATACTCTAAGCTA 58.856 37.037 0.00 0.00 0.00 3.32
60 61 2.292292 ACTACGGTTTGACCATTTGCAC 59.708 45.455 0.00 0.00 38.47 4.57
77 78 8.807581 CAAGGAAAGAACAAACAAAATCACTAC 58.192 33.333 0.00 0.00 0.00 2.73
83 84 7.446001 TTTGCAAGGAAAGAACAAACAAAAT 57.554 28.000 0.00 0.00 0.00 1.82
91 92 5.737063 GCTTCTCATTTGCAAGGAAAGAACA 60.737 40.000 18.20 0.00 0.00 3.18
100 101 6.315642 TCAGATCTAAGCTTCTCATTTGCAAG 59.684 38.462 0.00 0.00 0.00 4.01
126 127 8.109634 TGGATATACTCAAGGCTTCTTCTTTTT 58.890 33.333 0.00 0.00 0.00 1.94
127 128 7.633789 TGGATATACTCAAGGCTTCTTCTTTT 58.366 34.615 0.00 0.00 0.00 2.27
131 146 5.305644 TCCTGGATATACTCAAGGCTTCTTC 59.694 44.000 0.00 0.00 44.07 2.87
151 166 9.245962 GCAATTTTAAGATTCTTGATCATCCTG 57.754 33.333 9.22 0.00 37.22 3.86
180 195 6.806668 CCCCATTGGTTACCAGATTAATTT 57.193 37.500 3.65 0.00 33.81 1.82
274 289 7.512992 TGTTCATTACAAAATTTTCCACCCAT 58.487 30.769 0.00 0.00 32.64 4.00
368 386 4.801891 TCAACATGAGCTGCATCTTTTTC 58.198 39.130 0.00 0.00 34.15 2.29
374 392 3.058155 GGATCATCAACATGAGCTGCATC 60.058 47.826 0.00 0.00 43.79 3.91
388 406 5.705441 GTGTCTTGTGTTTTAGGGATCATCA 59.295 40.000 0.00 0.00 0.00 3.07
403 421 4.621460 CCTTGTGTATCTACGTGTCTTGTG 59.379 45.833 0.00 0.00 0.00 3.33
489 510 5.471257 GCTAGTCCGTAGATGATTTTAGGG 58.529 45.833 0.00 0.00 0.00 3.53
500 522 2.547211 GCTATTGTCGCTAGTCCGTAGA 59.453 50.000 0.00 0.00 0.00 2.59
513 537 3.813596 CCACGCCTGGCTATTGTC 58.186 61.111 17.92 0.00 0.00 3.18
645 671 2.957006 GAGCTGGATGATTGATGGCTTT 59.043 45.455 0.00 0.00 0.00 3.51
688 726 1.135139 CGGCGAGAGATTGGAGAAAGA 59.865 52.381 0.00 0.00 0.00 2.52
715 761 5.409520 GTCATGTTGCTCTTTCTATGTGACA 59.590 40.000 0.00 0.00 34.13 3.58
716 762 5.409520 TGTCATGTTGCTCTTTCTATGTGAC 59.590 40.000 0.00 0.00 34.44 3.67
753 800 6.487103 GCACTACATTTGAAGGTGCTTATAC 58.513 40.000 8.79 0.00 46.39 1.47
829 879 1.033746 TCGTCCCCACTCGTACATCC 61.034 60.000 0.00 0.00 0.00 3.51
888 938 4.757149 ACTATTTTCCACTTCAGTGTCAGC 59.243 41.667 6.22 0.00 44.21 4.26
920 970 4.285292 AGCGTGTACTTATCGGTTTATCG 58.715 43.478 0.00 0.00 31.43 2.92
921 971 4.678742 GGAGCGTGTACTTATCGGTTTATC 59.321 45.833 0.00 0.00 35.52 1.75
922 972 4.614946 GGAGCGTGTACTTATCGGTTTAT 58.385 43.478 0.00 0.00 35.52 1.40
923 973 3.487376 CGGAGCGTGTACTTATCGGTTTA 60.487 47.826 0.00 0.00 35.52 2.01
924 974 2.733227 CGGAGCGTGTACTTATCGGTTT 60.733 50.000 0.00 0.00 35.52 3.27
925 975 1.202222 CGGAGCGTGTACTTATCGGTT 60.202 52.381 0.00 0.00 35.52 4.44
926 976 0.379669 CGGAGCGTGTACTTATCGGT 59.620 55.000 0.00 0.00 37.98 4.69
927 977 0.659427 TCGGAGCGTGTACTTATCGG 59.341 55.000 0.00 0.00 0.00 4.18
928 978 2.373269 CTTCGGAGCGTGTACTTATCG 58.627 52.381 0.00 0.00 0.00 2.92
929 979 2.728922 CCTTCGGAGCGTGTACTTATC 58.271 52.381 0.00 0.00 0.00 1.75
962 1190 3.835790 CTGGGGTTTGGCCGTTCGA 62.836 63.158 0.00 0.00 38.44 3.71
1146 1395 3.644465 TAGGGTTGGGGCGGGATCA 62.644 63.158 0.00 0.00 0.00 2.92
1350 1787 0.914644 TGAGGGCCAGAGATTTGGAG 59.085 55.000 6.18 0.00 40.87 3.86
1377 1814 2.029290 GGCTAAGAGGAGAAACACGACA 60.029 50.000 0.00 0.00 0.00 4.35
1431 1869 4.612412 AAGGCGCGGTGGTCGAAA 62.612 61.111 8.83 0.00 42.43 3.46
1514 1952 3.330720 GGCACTGGTACTGGCCCT 61.331 66.667 0.00 0.00 37.54 5.19
1578 2016 1.446907 CTTGCTCTCCGATGTTTGCT 58.553 50.000 0.00 0.00 0.00 3.91
1732 2254 8.581578 GGACCCAAACTAATCAATTTTACAGAA 58.418 33.333 0.00 0.00 0.00 3.02
1748 2270 2.146920 TTTTTCCACGGACCCAAACT 57.853 45.000 0.00 0.00 0.00 2.66
1773 2295 1.839424 ACCTATGAGCAACCAAAGCC 58.161 50.000 0.00 0.00 0.00 4.35
1785 2307 9.817809 GTTTCATGTCAGTCTAATAACCTATGA 57.182 33.333 0.00 0.00 0.00 2.15
1789 2311 7.936847 TGTTGTTTCATGTCAGTCTAATAACCT 59.063 33.333 0.00 0.00 0.00 3.50
1828 2351 6.275335 ACTCAAATATGTGCACAATATTGCC 58.725 36.000 25.72 7.47 42.25 4.52
1900 2423 7.556275 TCAAGTCTTGACAATCAAACCTAAGTT 59.444 33.333 11.36 0.00 35.73 2.66
1901 2424 7.054124 TCAAGTCTTGACAATCAAACCTAAGT 58.946 34.615 11.36 0.00 35.73 2.24
1902 2425 7.496529 TCAAGTCTTGACAATCAAACCTAAG 57.503 36.000 11.36 0.00 35.73 2.18
1970 2503 9.964354 ACCGGTTTAACCTTTTTATCTAGTAAT 57.036 29.630 12.66 0.00 35.66 1.89
1975 2566 7.820872 CAGAGACCGGTTTAACCTTTTTATCTA 59.179 37.037 9.42 0.00 35.66 1.98
2064 2662 7.116805 CCAGATCTGATTTAAACAGGCAAAAAC 59.883 37.037 24.62 0.20 36.22 2.43
2089 2687 2.755103 CAAGGGGTTTCTCTAATGCACC 59.245 50.000 0.00 0.00 0.00 5.01
2090 2688 2.164422 GCAAGGGGTTTCTCTAATGCAC 59.836 50.000 0.00 0.00 33.00 4.57
2092 2690 2.728007 AGCAAGGGGTTTCTCTAATGC 58.272 47.619 0.00 0.00 0.00 3.56
2160 2762 9.028284 ACATATCCATCTCTTTTGAACAAACAT 57.972 29.630 0.00 0.00 0.00 2.71
2181 2788 7.926674 TGCACTGCAAGCATATATTACATAT 57.073 32.000 9.24 0.00 37.60 1.78
2201 2811 1.228245 ACGGGCCATGGATATGCAC 60.228 57.895 18.40 0.00 32.79 4.57
2248 2859 5.582269 GCTGCAATAAGATGAACTCACACTA 59.418 40.000 0.00 0.00 0.00 2.74
2254 2865 9.823098 CTATAAATGCTGCAATAAGATGAACTC 57.177 33.333 6.36 0.00 0.00 3.01
2312 2983 7.177216 TGCCAATTTTGTTGAAGAGAGATATGT 59.823 33.333 0.00 0.00 0.00 2.29
2316 2987 6.600882 ATGCCAATTTTGTTGAAGAGAGAT 57.399 33.333 0.00 0.00 0.00 2.75
2335 3006 1.379576 AGCTCAGCCCAAGAATGCC 60.380 57.895 0.00 0.00 0.00 4.40
2451 3175 8.196103 TCAAATTGACACAAGACATCAAAATGA 58.804 29.630 0.00 0.00 36.03 2.57
2518 3254 6.422100 CGAAGTGTTACCATCTAATCATCCAG 59.578 42.308 0.00 0.00 0.00 3.86
2542 3283 6.696198 CATAGCTTGTACATGTAACAACTCG 58.304 40.000 7.25 4.81 33.45 4.18
2547 3288 8.731275 AAATAGCATAGCTTGTACATGTAACA 57.269 30.769 7.25 5.65 40.44 2.41
2674 3497 6.841781 AATAAGAGGAGGCCTAATAAACCA 57.158 37.500 4.42 0.00 31.76 3.67
2702 3525 8.306038 TGGTCAAATCTATGGTCAAATTTTGAG 58.694 33.333 12.02 1.06 41.01 3.02
2768 3592 6.477688 TGGATATGTATTCGAACGAGGTTTTC 59.522 38.462 0.00 0.00 0.00 2.29
2773 3597 5.769367 TCTTGGATATGTATTCGAACGAGG 58.231 41.667 0.00 0.00 0.00 4.63
2777 3601 8.136165 AGTGTACTCTTGGATATGTATTCGAAC 58.864 37.037 0.00 0.00 0.00 3.95
2788 3612 7.016858 ACCCTACAAAAAGTGTACTCTTGGATA 59.983 37.037 10.76 2.21 41.98 2.59
2795 3619 9.363763 GAAGTATACCCTACAAAAAGTGTACTC 57.636 37.037 0.00 0.00 41.98 2.59
3111 3936 1.122019 AAGCACTCCTTCCGTCTGGT 61.122 55.000 0.00 0.00 36.30 4.00
3121 3946 3.084786 GGCAATTAGTTCAAGCACTCCT 58.915 45.455 0.00 0.00 0.00 3.69
3169 4216 3.055385 TGGTCCAACCTCACATAGCTTAC 60.055 47.826 0.00 0.00 39.58 2.34
3222 4279 8.706322 AGTTTAAGACAGGTGAACCAATTAAT 57.294 30.769 1.62 0.00 38.89 1.40
3225 4282 6.605594 TGAAGTTTAAGACAGGTGAACCAATT 59.394 34.615 1.62 0.00 38.89 2.32
3298 4371 2.154462 AGTTCATGTTGCTCCCTTTCG 58.846 47.619 0.00 0.00 0.00 3.46
3352 4501 7.558444 ACCTGTTAAAACCTGAATCTGTAAACA 59.442 33.333 0.00 0.00 0.00 2.83
3376 4525 4.943705 TGCATCCTGTTAAATCTGAAGACC 59.056 41.667 0.00 0.00 0.00 3.85
3451 4661 5.984926 CAGCACAGACATGGTAAACAAAAAT 59.015 36.000 0.00 0.00 0.00 1.82
3509 4725 5.600696 TCAACCAAGCAAATTTTCTCCTTC 58.399 37.500 0.00 0.00 0.00 3.46
3520 4736 2.364002 GCCCTTACTTCAACCAAGCAAA 59.636 45.455 0.00 0.00 35.17 3.68
3526 4742 2.334977 TCTCTGCCCTTACTTCAACCA 58.665 47.619 0.00 0.00 0.00 3.67
3607 4847 5.350504 ACCAGAACGATTCATGAGAGAAT 57.649 39.130 0.00 0.00 40.75 2.40
3612 4852 5.504665 GCCAAATACCAGAACGATTCATGAG 60.505 44.000 0.00 0.00 0.00 2.90
3615 4855 4.526970 AGCCAAATACCAGAACGATTCAT 58.473 39.130 0.00 0.00 0.00 2.57
3618 4858 5.099042 AGTAGCCAAATACCAGAACGATT 57.901 39.130 0.00 0.00 0.00 3.34
3715 4958 8.492782 AGAAGATAAGAATTGATCAGGTGATGT 58.507 33.333 0.00 0.00 34.37 3.06
3768 5015 1.078072 TGTTCGCCCAACACACACT 60.078 52.632 0.00 0.00 40.29 3.55
3819 6350 7.741554 ACTCCCTAAGAACAAGAATACTGAT 57.258 36.000 0.00 0.00 0.00 2.90
3976 6526 9.981114 GAAGACCTTAAAATTCCTGAAAATTCA 57.019 29.630 0.00 0.00 35.57 2.57
4021 6571 8.256611 TCAAAGCAAGCTTTACAATCTACTAG 57.743 34.615 18.59 3.75 43.56 2.57
4035 7065 5.945784 TCACCACTAATATTCAAAGCAAGCT 59.054 36.000 0.00 0.00 0.00 3.74
4041 7071 5.064707 CACGGGTCACCACTAATATTCAAAG 59.935 44.000 0.00 0.00 36.13 2.77
4074 7253 1.167851 AACATGCCATCAGACCGTTG 58.832 50.000 0.00 0.00 0.00 4.10
4111 7304 7.830099 AACAAGATGAGAAGGAAGTCAAAAT 57.170 32.000 0.00 0.00 0.00 1.82
4114 7307 6.460123 GCAAAACAAGATGAGAAGGAAGTCAA 60.460 38.462 0.00 0.00 0.00 3.18
4153 7346 7.874940 TCAAATTTTGTGACCTCTCTTACATG 58.125 34.615 8.89 0.00 0.00 3.21
4154 7347 8.463930 TTCAAATTTTGTGACCTCTCTTACAT 57.536 30.769 8.89 0.00 0.00 2.29
4197 7390 3.190118 GCAAGCACTTCAACTCAAGCTAT 59.810 43.478 0.00 0.00 0.00 2.97
4200 7393 1.336125 AGCAAGCACTTCAACTCAAGC 59.664 47.619 0.00 0.00 0.00 4.01
4256 7451 3.764885 AAAAGCATGCGATAGTGGAAC 57.235 42.857 13.01 0.00 39.35 3.62
4295 7511 8.507582 TGAGATGAAGGTAGTACTATCCTAGA 57.492 38.462 18.57 11.68 0.00 2.43
4310 7526 7.761409 TCATTTCCGTTATTTTGAGATGAAGG 58.239 34.615 0.00 0.00 29.72 3.46
4376 7592 7.733868 CGTCAACTAAAATTGCCATTAAAAACG 59.266 33.333 0.00 0.00 0.00 3.60
4384 7600 3.932545 TGCGTCAACTAAAATTGCCAT 57.067 38.095 0.00 0.00 0.00 4.40
4404 7620 6.037062 GCTTGCCAACTAAACTTGTCATTTTT 59.963 34.615 0.00 0.00 0.00 1.94
4406 7622 5.049828 GCTTGCCAACTAAACTTGTCATTT 58.950 37.500 0.00 0.00 0.00 2.32
4411 7627 2.223479 CGTGCTTGCCAACTAAACTTGT 60.223 45.455 0.00 0.00 0.00 3.16
4416 7632 1.103987 TGCCGTGCTTGCCAACTAAA 61.104 50.000 0.00 0.00 0.00 1.85
4465 7681 6.148315 AGTTTAGTTGGTAAGTACGGCAAATC 59.852 38.462 0.00 0.00 0.00 2.17
4466 7682 5.999600 AGTTTAGTTGGTAAGTACGGCAAAT 59.000 36.000 0.00 0.00 0.00 2.32
4469 7685 4.605640 AGTTTAGTTGGTAAGTACGGCA 57.394 40.909 0.00 0.00 0.00 5.69
4470 7686 4.377738 GCAAGTTTAGTTGGTAAGTACGGC 60.378 45.833 0.00 0.00 0.00 5.68
4471 7687 4.152938 GGCAAGTTTAGTTGGTAAGTACGG 59.847 45.833 0.00 0.00 0.00 4.02
4472 7688 4.751098 TGGCAAGTTTAGTTGGTAAGTACG 59.249 41.667 0.00 0.00 0.00 3.67
4473 7689 6.349033 CCATGGCAAGTTTAGTTGGTAAGTAC 60.349 42.308 0.00 0.00 0.00 2.73
4503 7719 8.426881 ACGCTTTTTGTGGTAATTTACATTTT 57.573 26.923 8.73 0.00 0.00 1.82
4508 7724 7.452630 TCAAACGCTTTTTGTGGTAATTTAC 57.547 32.000 7.35 0.00 0.00 2.01
4515 7731 4.499183 TCAAATCAAACGCTTTTTGTGGT 58.501 34.783 7.35 0.00 32.33 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.