Multiple sequence alignment - TraesCS1A01G382100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G382100 chr1A 100.000 3197 0 0 1 3197 552909582 552906386 0.000000e+00 5904.0
1 TraesCS1A01G382100 chr1A 85.484 372 43 8 1000 1364 552976530 552976163 8.370000e-101 377.0
2 TraesCS1A01G382100 chr1A 83.377 379 45 13 1000 1372 553047248 553046882 5.110000e-88 335.0
3 TraesCS1A01G382100 chr1A 76.419 458 74 21 1141 1570 553133958 553133507 1.930000e-52 217.0
4 TraesCS1A01G382100 chr1A 88.298 94 8 2 2215 2305 552975337 552975244 3.370000e-20 110.0
5 TraesCS1A01G382100 chr1D 92.087 2262 125 23 516 2756 461423387 461421159 0.000000e+00 3136.0
6 TraesCS1A01G382100 chr1D 85.372 376 52 1 1000 1372 461539107 461538732 1.390000e-103 387.0
7 TraesCS1A01G382100 chr1D 83.155 374 55 5 1000 1372 461752702 461752336 5.110000e-88 335.0
8 TraesCS1A01G382100 chr1D 82.952 393 42 10 1 373 461423913 461423526 6.610000e-87 331.0
9 TraesCS1A01G382100 chr1D 92.169 166 12 1 3032 3197 461421135 461420971 1.920000e-57 233.0
10 TraesCS1A01G382100 chr1B 91.103 2158 128 20 747 2869 634313952 634311824 0.000000e+00 2863.0
11 TraesCS1A01G382100 chr1B 93.323 659 35 2 2087 2745 634251802 634251153 0.000000e+00 965.0
12 TraesCS1A01G382100 chr1B 95.402 348 9 1 2760 3100 634251005 634250658 6.030000e-152 547.0
13 TraesCS1A01G382100 chr1B 84.677 372 54 1 1000 1368 634564798 634565169 5.040000e-98 368.0
14 TraesCS1A01G382100 chr1B 85.625 320 37 6 114 428 634314371 634314056 8.550000e-86 327.0
15 TraesCS1A01G382100 chr1B 91.489 141 11 1 2356 2496 634288207 634288068 3.250000e-45 193.0
16 TraesCS1A01G382100 chr1B 93.043 115 8 0 1 115 634316612 634316498 5.480000e-38 169.0
17 TraesCS1A01G382100 chr1B 96.000 100 3 1 3099 3197 634250564 634250465 9.180000e-36 161.0
18 TraesCS1A01G382100 chr1B 92.233 103 5 1 1556 1655 634251900 634251798 3.320000e-30 143.0
19 TraesCS1A01G382100 chrUn 86.400 375 48 1 1001 1372 1068260 1067886 1.070000e-109 407.0
20 TraesCS1A01G382100 chr5A 93.939 165 10 0 2460 2624 605231140 605231304 1.900000e-62 250.0
21 TraesCS1A01G382100 chr4B 92.857 168 10 1 2463 2628 360233809 360233642 3.190000e-60 243.0
22 TraesCS1A01G382100 chr3A 92.814 167 12 0 2462 2628 600920854 600921020 3.190000e-60 243.0
23 TraesCS1A01G382100 chr2D 93.210 162 11 0 2463 2624 24344566 24344405 4.120000e-59 239.0
24 TraesCS1A01G382100 chr3B 91.279 172 13 2 2461 2632 529407952 529407783 1.920000e-57 233.0
25 TraesCS1A01G382100 chr6D 90.055 181 14 4 2463 2641 128093068 128092890 6.900000e-57 231.0
26 TraesCS1A01G382100 chr7B 86.076 79 11 0 337 415 456920610 456920688 5.680000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G382100 chr1A 552906386 552909582 3196 True 5904.000000 5904 100.000000 1 3197 1 chr1A.!!$R1 3196
1 TraesCS1A01G382100 chr1A 552975244 552976530 1286 True 243.500000 377 86.891000 1000 2305 2 chr1A.!!$R4 1305
2 TraesCS1A01G382100 chr1D 461420971 461423913 2942 True 1233.333333 3136 89.069333 1 3197 3 chr1D.!!$R3 3196
3 TraesCS1A01G382100 chr1B 634311824 634316612 4788 True 1119.666667 2863 89.923667 1 2869 3 chr1B.!!$R3 2868
4 TraesCS1A01G382100 chr1B 634250465 634251900 1435 True 454.000000 965 94.239500 1556 3197 4 chr1B.!!$R2 1641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
734 2926 0.032912 AAGGACGGGGGTGTTGTTTT 60.033 50.0 0.00 0.0 0.00 2.43 F
1384 3611 0.244994 ATCATCTATGCTCGACGCCC 59.755 55.0 4.73 0.0 38.05 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 4075 0.798776 GCCCGATGAAGCCAATATCG 59.201 55.0 0.00 0.0 42.31 2.92 R
2263 4550 0.813184 CACAATGGCATGGACCAGAC 59.187 55.0 9.33 0.0 44.71 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 1.680249 GGGGATGTCAAACTCTGGCTC 60.680 57.143 0.00 0.00 0.00 4.70
159 2296 2.825532 AGCAGAACGGGTTTTATGCAAT 59.174 40.909 15.12 0.00 36.15 3.56
174 2311 8.734030 GTTTTATGCAATACGATCTTAAAGTGC 58.266 33.333 0.00 6.16 0.00 4.40
175 2312 4.875544 TGCAATACGATCTTAAAGTGCC 57.124 40.909 0.00 0.00 0.00 5.01
188 2325 0.336048 AAGTGCCCAAGGTGCCATAT 59.664 50.000 0.00 0.00 0.00 1.78
189 2326 0.336048 AGTGCCCAAGGTGCCATATT 59.664 50.000 0.00 0.00 0.00 1.28
196 2333 3.117512 CCCAAGGTGCCATATTACCTCTT 60.118 47.826 0.00 0.00 46.28 2.85
222 2359 4.323180 CCGATCCATTTATTACCCATCCGA 60.323 45.833 0.00 0.00 0.00 4.55
223 2360 4.870426 CGATCCATTTATTACCCATCCGAG 59.130 45.833 0.00 0.00 0.00 4.63
248 2385 8.375506 AGATGTTCTTGGTAGATAGTTGACAAA 58.624 33.333 0.00 0.00 0.00 2.83
353 2503 5.212194 CAACATTTTTCACGGATTTCGAGT 58.788 37.500 0.00 0.00 42.43 4.18
410 2560 3.135994 TCCTAAAGTGTTCGCTCCAAAC 58.864 45.455 0.00 0.00 0.00 2.93
425 2575 1.001378 CCAAACGCACTTTCTCCAAGG 60.001 52.381 0.00 0.00 36.72 3.61
428 2578 2.922740 ACGCACTTTCTCCAAGGTAA 57.077 45.000 0.00 0.00 36.72 2.85
429 2579 3.418684 ACGCACTTTCTCCAAGGTAAT 57.581 42.857 0.00 0.00 36.72 1.89
430 2580 3.335579 ACGCACTTTCTCCAAGGTAATC 58.664 45.455 0.00 0.00 36.72 1.75
431 2581 3.008049 ACGCACTTTCTCCAAGGTAATCT 59.992 43.478 0.00 0.00 36.72 2.40
432 2582 3.619038 CGCACTTTCTCCAAGGTAATCTC 59.381 47.826 0.00 0.00 36.72 2.75
435 2585 5.707764 GCACTTTCTCCAAGGTAATCTCTTT 59.292 40.000 0.00 0.00 36.72 2.52
438 2588 4.222124 TCTCCAAGGTAATCTCTTTGGC 57.778 45.455 3.29 0.00 0.00 4.52
439 2589 3.846588 TCTCCAAGGTAATCTCTTTGGCT 59.153 43.478 3.29 0.00 0.00 4.75
440 2590 4.080863 TCTCCAAGGTAATCTCTTTGGCTC 60.081 45.833 3.29 0.00 0.00 4.70
468 2618 0.319383 CCTGGATCGAGCGAGAATGG 60.319 60.000 14.66 0.00 0.00 3.16
482 2632 2.484264 GAGAATGGGGAAGAAACACACG 59.516 50.000 0.00 0.00 0.00 4.49
485 2635 0.394488 TGGGGAAGAAACACACGCAA 60.394 50.000 0.00 0.00 0.00 4.85
497 2677 0.318762 ACACGCAAAGAGAGAGGACC 59.681 55.000 0.00 0.00 0.00 4.46
501 2681 0.612744 GCAAAGAGAGAGGACCAGCT 59.387 55.000 0.00 0.00 0.00 4.24
505 2685 1.685421 GAGAGAGGACCAGCTGGCT 60.685 63.158 33.06 22.25 39.32 4.75
521 2712 4.404715 AGCTGGCTAGAGGAATAAACGTTA 59.595 41.667 0.00 0.00 0.00 3.18
525 2716 6.746120 TGGCTAGAGGAATAAACGTTATCTC 58.254 40.000 0.00 4.85 0.00 2.75
528 2719 7.306953 GCTAGAGGAATAAACGTTATCTCGAT 58.693 38.462 0.00 0.00 34.70 3.59
533 2724 9.460906 GAGGAATAAACGTTATCTCGATACTTT 57.539 33.333 0.00 0.00 34.70 2.66
542 2733 2.256174 TCTCGATACTTTTCGTTGCCG 58.744 47.619 0.00 0.00 40.03 5.69
576 2767 2.129607 GCGGTCTTCGTCAAGTGTTAA 58.870 47.619 0.00 0.00 41.72 2.01
591 2782 6.428465 TCAAGTGTTAATTCTTCGGTGCAATA 59.572 34.615 0.00 0.00 0.00 1.90
592 2783 6.811253 AGTGTTAATTCTTCGGTGCAATAA 57.189 33.333 0.00 0.00 0.00 1.40
603 2794 8.682128 TCTTCGGTGCAATAAATTGTTTAATC 57.318 30.769 4.71 0.00 39.88 1.75
725 2917 3.577805 AAAATATCTCAAGGACGGGGG 57.422 47.619 0.00 0.00 0.00 5.40
731 2923 2.052047 CTCAAGGACGGGGGTGTTGT 62.052 60.000 0.00 0.00 0.00 3.32
732 2924 1.152839 CAAGGACGGGGGTGTTGTT 60.153 57.895 0.00 0.00 0.00 2.83
733 2925 0.753848 CAAGGACGGGGGTGTTGTTT 60.754 55.000 0.00 0.00 0.00 2.83
734 2926 0.032912 AAGGACGGGGGTGTTGTTTT 60.033 50.000 0.00 0.00 0.00 2.43
735 2927 0.753848 AGGACGGGGGTGTTGTTTTG 60.754 55.000 0.00 0.00 0.00 2.44
738 2934 1.066454 GACGGGGGTGTTGTTTTGAAG 59.934 52.381 0.00 0.00 0.00 3.02
744 2940 5.294356 GGGGGTGTTGTTTTGAAGAAATAC 58.706 41.667 0.00 0.00 0.00 1.89
745 2941 5.294356 GGGGTGTTGTTTTGAAGAAATACC 58.706 41.667 0.00 0.00 0.00 2.73
815 3011 3.364549 CCCAAAGGCCTCATTGTTATGA 58.635 45.455 5.23 0.00 38.45 2.15
816 3012 3.768757 CCCAAAGGCCTCATTGTTATGAA 59.231 43.478 5.23 0.00 40.17 2.57
818 3014 5.452356 CCCAAAGGCCTCATTGTTATGAATC 60.452 44.000 5.23 0.00 40.17 2.52
819 3015 5.452356 CCAAAGGCCTCATTGTTATGAATCC 60.452 44.000 5.23 0.00 40.17 3.01
820 3016 3.837355 AGGCCTCATTGTTATGAATCCC 58.163 45.455 0.00 0.00 40.17 3.85
916 3125 4.078516 GCCCGCTACGAACCACCT 62.079 66.667 0.00 0.00 0.00 4.00
917 3126 2.713967 GCCCGCTACGAACCACCTA 61.714 63.158 0.00 0.00 0.00 3.08
918 3127 1.140375 CCCGCTACGAACCACCTAC 59.860 63.158 0.00 0.00 0.00 3.18
919 3128 1.226491 CCGCTACGAACCACCTACG 60.226 63.158 0.00 0.00 0.00 3.51
942 3161 0.310854 CCAACTTCCGCACAAGGTTC 59.689 55.000 0.00 0.00 0.00 3.62
1013 3237 1.000896 CCGGGATGGCAAAGAGGTT 60.001 57.895 0.00 0.00 0.00 3.50
1034 3261 2.660064 GGAAGAAGGAGCAGCCGGA 61.660 63.158 5.05 0.00 43.43 5.14
1374 3601 4.210746 CAGTGCTGGACGAAATCATCTATG 59.789 45.833 0.00 0.00 0.00 2.23
1376 3603 3.181462 TGCTGGACGAAATCATCTATGCT 60.181 43.478 0.00 0.00 0.00 3.79
1384 3611 0.244994 ATCATCTATGCTCGACGCCC 59.755 55.000 4.73 0.00 38.05 6.13
1518 3745 1.153086 GTTGCCTGCCATCGAGGAT 60.153 57.895 0.00 0.00 41.22 3.24
1523 3750 1.664017 CTGCCATCGAGGATCTGCG 60.664 63.158 0.00 0.00 41.22 5.18
1682 3921 3.849951 GAGCGATTGGGGCGAGGA 61.850 66.667 0.00 0.00 35.00 3.71
1685 3924 2.267642 CGATTGGGGCGAGGACAA 59.732 61.111 0.00 0.00 0.00 3.18
1686 3925 1.153168 CGATTGGGGCGAGGACAAT 60.153 57.895 0.00 0.00 37.52 2.71
1767 4006 4.087182 TGACTACCCGAGATTCTTCAGTT 58.913 43.478 0.00 0.00 0.00 3.16
2242 4526 2.103771 GGGTCAGATCTTCTATGCAGCA 59.896 50.000 0.00 0.00 0.00 4.41
2263 4550 7.254522 GCAGCATGGTATTTTGTATTTTGATGG 60.255 37.037 0.00 0.00 35.86 3.51
2395 4693 2.296471 CACTTGTTAGTCTCTCGTGGGT 59.704 50.000 0.00 0.00 30.26 4.51
2396 4694 2.963782 ACTTGTTAGTCTCTCGTGGGTT 59.036 45.455 0.00 0.00 0.00 4.11
2401 4699 2.751166 AGTCTCTCGTGGGTTGAATG 57.249 50.000 0.00 0.00 0.00 2.67
2452 4750 2.026262 TGGGACTATCTGCCTTTTCACC 60.026 50.000 0.00 0.00 0.00 4.02
2555 4855 9.148104 AGACGTATTTTAGAGTGTAAATTCACC 57.852 33.333 0.00 0.00 38.91 4.02
2631 4931 8.726870 TTAGGAACGAAGGGAGTATTTATTTG 57.273 34.615 0.00 0.00 0.00 2.32
2664 4964 0.896923 CATGTTCCCCACAACCATGG 59.103 55.000 11.19 11.19 39.50 3.66
2705 5005 1.391157 GCGCATTGCTCCCCCATTTA 61.391 55.000 0.30 0.00 41.73 1.40
2712 5012 0.106669 GCTCCCCCATTTACCTGTCC 60.107 60.000 0.00 0.00 0.00 4.02
2739 5039 7.625828 ATGGTTACCTTTTCTGCAGTAATAC 57.374 36.000 14.67 4.37 0.00 1.89
2756 5181 7.516312 GCAGTAATACATACTTAAGCAACGGAC 60.516 40.741 1.29 0.00 42.31 4.79
2757 5182 7.705325 CAGTAATACATACTTAAGCAACGGACT 59.295 37.037 1.29 0.00 42.31 3.85
2758 5183 7.919621 AGTAATACATACTTAAGCAACGGACTC 59.080 37.037 1.29 0.00 42.31 3.36
2864 5305 4.978083 ACAAGTTCATCAGCAATCATCC 57.022 40.909 0.00 0.00 0.00 3.51
2937 5385 6.431234 GTCCTTGGCCAATCTTATATTAGTGG 59.569 42.308 20.85 11.85 0.00 4.00
2992 5440 6.604795 TGAATCCATTTCTCAAGAATCTTCCC 59.395 38.462 0.00 0.00 35.23 3.97
2996 5444 5.126707 CCATTTCTCAAGAATCTTCCCCTTG 59.873 44.000 0.00 0.00 38.79 3.61
3014 5462 3.551454 CCTTGTTGTTGTCCAGATTGCAG 60.551 47.826 0.00 0.00 0.00 4.41
3019 5467 1.467734 GTTGTCCAGATTGCAGCTCAG 59.532 52.381 0.00 0.00 0.00 3.35
3141 5684 3.961408 TGGTTCTAGACTTCCAGCCTATC 59.039 47.826 0.00 0.00 0.00 2.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.558931 TTGAAGAGCCAGAGTTTGACA 57.441 42.857 0.00 0.00 0.00 3.58
50 51 1.945394 CGGATTCCTCCAGCATTGAAG 59.055 52.381 0.30 0.00 42.19 3.02
87 88 4.851252 CTGCCCTCCCCATCCCCT 62.851 72.222 0.00 0.00 0.00 4.79
93 94 0.118346 TAGTTTCTCTGCCCTCCCCA 59.882 55.000 0.00 0.00 0.00 4.96
145 2282 5.418310 AAGATCGTATTGCATAAAACCCG 57.582 39.130 0.00 0.00 0.00 5.28
159 2296 3.262405 ACCTTGGGCACTTTAAGATCGTA 59.738 43.478 0.00 0.00 0.00 3.43
174 2311 2.443255 AGAGGTAATATGGCACCTTGGG 59.557 50.000 0.00 0.00 45.32 4.12
175 2312 3.864789 AGAGGTAATATGGCACCTTGG 57.135 47.619 0.00 0.00 45.32 3.61
189 2326 8.755977 GGTAATAAATGGATCGGATAAGAGGTA 58.244 37.037 0.00 0.00 0.00 3.08
196 2333 6.407639 CGGATGGGTAATAAATGGATCGGATA 60.408 42.308 0.00 0.00 0.00 2.59
210 2347 4.444876 CCAAGAACATCTCGGATGGGTAAT 60.445 45.833 15.41 0.82 0.00 1.89
214 2351 1.210478 ACCAAGAACATCTCGGATGGG 59.790 52.381 15.41 10.06 33.75 4.00
222 2359 7.482169 TGTCAACTATCTACCAAGAACATCT 57.518 36.000 0.00 0.00 34.73 2.90
223 2360 8.547967 TTTGTCAACTATCTACCAAGAACATC 57.452 34.615 0.00 0.00 34.73 3.06
269 2406 0.037697 GGTGGTGCACTCATCGTGTA 60.038 55.000 17.98 0.00 45.57 2.90
320 2458 8.132604 TCCGTGAAAAATGTTGGATTTTTAAC 57.867 30.769 8.96 8.96 40.17 2.01
330 2476 5.115472 CACTCGAAATCCGTGAAAAATGTTG 59.885 40.000 0.00 0.00 39.75 3.33
331 2477 5.008217 TCACTCGAAATCCGTGAAAAATGTT 59.992 36.000 2.26 0.00 39.75 2.71
373 2523 1.144057 GGATTCGTGTGCGGGATCT 59.856 57.895 0.00 0.00 38.89 2.75
410 2560 3.600388 AGATTACCTTGGAGAAAGTGCG 58.400 45.455 0.00 0.00 33.66 5.34
425 2575 5.173492 GTCGTATTCGAGCCAAAGAGATTAC 59.827 44.000 0.00 0.00 46.96 1.89
428 2578 3.707793 GTCGTATTCGAGCCAAAGAGAT 58.292 45.455 0.00 0.00 46.96 2.75
429 2579 3.146618 GTCGTATTCGAGCCAAAGAGA 57.853 47.619 0.00 0.00 46.96 3.10
438 2588 1.871676 TCGATCCAGGTCGTATTCGAG 59.128 52.381 0.00 0.00 46.96 4.04
439 2589 1.871676 CTCGATCCAGGTCGTATTCGA 59.128 52.381 0.00 0.00 44.12 3.71
440 2590 1.663445 GCTCGATCCAGGTCGTATTCG 60.663 57.143 0.00 0.00 42.07 3.34
468 2618 1.673920 TCTTTGCGTGTGTTTCTTCCC 59.326 47.619 0.00 0.00 0.00 3.97
482 2632 0.612744 AGCTGGTCCTCTCTCTTTGC 59.387 55.000 0.00 0.00 0.00 3.68
485 2635 1.264045 GCCAGCTGGTCCTCTCTCTT 61.264 60.000 32.81 0.00 37.57 2.85
497 2677 3.126831 CGTTTATTCCTCTAGCCAGCTG 58.873 50.000 6.78 6.78 0.00 4.24
501 2681 6.514541 CGAGATAACGTTTATTCCTCTAGCCA 60.515 42.308 5.91 0.00 0.00 4.75
505 2685 9.499479 AGTATCGAGATAACGTTTATTCCTCTA 57.501 33.333 5.91 0.00 34.70 2.43
542 2733 4.821589 CCGCTCTTCGTGGCCCTC 62.822 72.222 0.00 0.00 36.29 4.30
567 2758 4.481930 TGCACCGAAGAATTAACACTTG 57.518 40.909 1.49 0.00 0.00 3.16
576 2767 9.651913 ATTAAACAATTTATTGCACCGAAGAAT 57.348 25.926 2.46 0.00 41.38 2.40
719 2911 1.107945 CTTCAAAACAACACCCCCGT 58.892 50.000 0.00 0.00 0.00 5.28
756 2952 0.690762 GGACTCCTGTGCCCAACTTA 59.309 55.000 0.00 0.00 0.00 2.24
819 3015 3.465403 CTCTGGAGCCTGGGACGG 61.465 72.222 0.00 0.00 0.00 4.79
859 3068 0.831711 ATTGTTTGTGCTCCACCCCC 60.832 55.000 0.00 0.00 32.73 5.40
916 3125 4.397832 GCGGAAGTTGGGGGCGTA 62.398 66.667 0.00 0.00 0.00 4.42
919 3128 4.966787 TGTGCGGAAGTTGGGGGC 62.967 66.667 0.00 0.00 0.00 5.80
942 3161 3.917760 GGGACGGAGGCGATCTGG 61.918 72.222 0.00 0.00 38.77 3.86
991 3215 2.824041 CTTTGCCATCCCGGACGG 60.824 66.667 0.73 3.25 36.56 4.79
1013 3237 1.892819 CGGCTGCTCCTTCTTCCTGA 61.893 60.000 0.00 0.00 0.00 3.86
1230 3457 0.108615 CGGAGATGTTGAGGAAGCGT 60.109 55.000 0.00 0.00 0.00 5.07
1374 3601 3.452024 GTCGTAGAGGGCGTCGAGC 62.452 68.421 0.00 0.00 41.77 5.03
1376 3603 2.821366 GGTCGTAGAGGGCGTCGA 60.821 66.667 0.00 0.00 36.95 4.20
1384 3611 3.885521 GGCGTCGGGGTCGTAGAG 61.886 72.222 0.00 0.00 36.95 2.43
1523 3750 2.202892 GGATGACGTTCCTCGGGC 60.203 66.667 0.00 0.00 44.69 6.13
1685 3924 9.474313 AACCATTGTAATAATCCACAGTAACAT 57.526 29.630 0.00 0.00 0.00 2.71
1686 3925 8.871629 AACCATTGTAATAATCCACAGTAACA 57.128 30.769 0.00 0.00 0.00 2.41
1767 4006 2.179427 CCCTCTGTGTCCACTGTGATA 58.821 52.381 9.86 0.00 0.00 2.15
1809 4048 1.364626 CCTCAACACTGAGCGGCATC 61.365 60.000 1.45 0.00 46.76 3.91
1836 4075 0.798776 GCCCGATGAAGCCAATATCG 59.201 55.000 0.00 0.00 42.31 2.92
2242 4526 8.477256 CCAGACCATCAAAATACAAAATACCAT 58.523 33.333 0.00 0.00 0.00 3.55
2263 4550 0.813184 CACAATGGCATGGACCAGAC 59.187 55.000 9.33 0.00 44.71 3.51
2312 4610 8.958506 CAAAGTGACTACTGACTAGGTATTACT 58.041 37.037 0.00 0.00 37.19 2.24
2315 4613 8.596781 ATCAAAGTGACTACTGACTAGGTATT 57.403 34.615 0.00 0.00 37.19 1.89
2337 4635 9.890629 AACTAGTACATGAAAGCAAATAGATCA 57.109 29.630 0.00 0.00 0.00 2.92
2395 4693 8.394971 ACTTGTTCTCATATTCACACATTCAA 57.605 30.769 0.00 0.00 0.00 2.69
2396 4694 7.984422 ACTTGTTCTCATATTCACACATTCA 57.016 32.000 0.00 0.00 0.00 2.57
2452 4750 5.483811 GAACAGAGGGAGTAGAAGGAAAAG 58.516 45.833 0.00 0.00 0.00 2.27
2555 4855 3.560068 GGACTACATACGGAGCAAAATGG 59.440 47.826 0.00 0.00 0.00 3.16
2664 4964 6.427150 CGCCCAGTTTACAAATACATATGAC 58.573 40.000 10.38 0.00 0.00 3.06
2705 5005 3.895704 AAGGTAACCATTTGGACAGGT 57.104 42.857 3.01 0.00 38.94 4.00
2712 5012 5.200368 ACTGCAGAAAAGGTAACCATTTG 57.800 39.130 23.35 0.00 37.17 2.32
2739 5039 3.617263 GTGGAGTCCGTTGCTTAAGTATG 59.383 47.826 4.30 0.00 0.00 2.39
2756 5181 2.035449 TGTCGACTAACACAAGGTGGAG 59.965 50.000 17.92 0.84 37.94 3.86
2757 5182 2.033372 TGTCGACTAACACAAGGTGGA 58.967 47.619 17.92 0.00 37.94 4.02
2758 5183 2.519377 TGTCGACTAACACAAGGTGG 57.481 50.000 17.92 0.00 37.94 4.61
2807 5240 5.435686 ACCATCTTAACTATGCCTCAACA 57.564 39.130 0.00 0.00 0.00 3.33
2864 5305 3.637998 GCAATAGGGTGCATGAATCAG 57.362 47.619 0.00 0.00 44.29 2.90
2937 5385 6.037098 AGACAATCACGATAAGCAGTCTAAC 58.963 40.000 0.00 0.00 33.72 2.34
2992 5440 2.361757 TGCAATCTGGACAACAACAAGG 59.638 45.455 0.00 0.00 0.00 3.61
2996 5444 1.610522 AGCTGCAATCTGGACAACAAC 59.389 47.619 1.02 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.