Multiple sequence alignment - TraesCS1A01G381900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G381900 | chr1A | 100.000 | 2455 | 0 | 0 | 938 | 3392 | 552216461 | 552218915 | 0.000000e+00 | 4534 |
1 | TraesCS1A01G381900 | chr1A | 100.000 | 603 | 0 | 0 | 1 | 603 | 552215524 | 552216126 | 0.000000e+00 | 1114 |
2 | TraesCS1A01G381900 | chr1A | 98.204 | 167 | 3 | 0 | 3226 | 3392 | 287465217 | 287465051 | 3.310000e-75 | 292 |
3 | TraesCS1A01G381900 | chr1D | 89.016 | 2358 | 170 | 53 | 938 | 3233 | 461142769 | 461145099 | 0.000000e+00 | 2837 |
4 | TraesCS1A01G381900 | chr1D | 87.654 | 486 | 37 | 14 | 102 | 574 | 461142304 | 461142779 | 8.280000e-151 | 544 |
5 | TraesCS1A01G381900 | chr1D | 86.508 | 126 | 11 | 6 | 1 | 122 | 461141896 | 461142019 | 2.120000e-27 | 134 |
6 | TraesCS1A01G381900 | chr1B | 86.398 | 1566 | 160 | 27 | 1215 | 2765 | 633351953 | 633353480 | 0.000000e+00 | 1663 |
7 | TraesCS1A01G381900 | chr1B | 89.920 | 377 | 27 | 5 | 2580 | 2955 | 633353758 | 633354124 | 3.060000e-130 | 475 |
8 | TraesCS1A01G381900 | chr1B | 85.053 | 281 | 35 | 5 | 2957 | 3233 | 633397108 | 633397385 | 2.580000e-71 | 279 |
9 | TraesCS1A01G381900 | chr4A | 79.717 | 1627 | 266 | 39 | 1053 | 2646 | 738743443 | 738741848 | 0.000000e+00 | 1118 |
10 | TraesCS1A01G381900 | chr4A | 99.401 | 167 | 1 | 0 | 3226 | 3392 | 121108359 | 121108525 | 1.530000e-78 | 303 |
11 | TraesCS1A01G381900 | chr4A | 97.159 | 176 | 4 | 1 | 3218 | 3392 | 381867962 | 381867787 | 2.560000e-76 | 296 |
12 | TraesCS1A01G381900 | chr4A | 97.619 | 168 | 4 | 0 | 3225 | 3392 | 495142357 | 495142190 | 4.280000e-74 | 289 |
13 | TraesCS1A01G381900 | chrUn | 78.967 | 1626 | 279 | 43 | 1184 | 2765 | 108305136 | 108303530 | 0.000000e+00 | 1050 |
14 | TraesCS1A01G381900 | chr4B | 78.229 | 1649 | 284 | 48 | 1167 | 2765 | 665919807 | 665921430 | 0.000000e+00 | 987 |
15 | TraesCS1A01G381900 | chr4B | 75.018 | 1397 | 279 | 46 | 1040 | 2395 | 625979695 | 625981062 | 1.750000e-162 | 582 |
16 | TraesCS1A01G381900 | chr5A | 77.193 | 1767 | 288 | 64 | 1053 | 2773 | 705943739 | 705945436 | 0.000000e+00 | 924 |
17 | TraesCS1A01G381900 | chr5A | 92.647 | 204 | 8 | 6 | 3196 | 3392 | 666806283 | 666806080 | 1.540000e-73 | 287 |
18 | TraesCS1A01G381900 | chr5A | 82.895 | 228 | 14 | 6 | 3015 | 3231 | 444056419 | 444056206 | 7.480000e-42 | 182 |
19 | TraesCS1A01G381900 | chr2D | 77.098 | 1668 | 303 | 57 | 1184 | 2815 | 14127929 | 14126305 | 0.000000e+00 | 891 |
20 | TraesCS1A01G381900 | chr7D | 79.176 | 1287 | 225 | 27 | 1200 | 2463 | 45838778 | 45837512 | 0.000000e+00 | 852 |
21 | TraesCS1A01G381900 | chr2B | 76.176 | 1658 | 300 | 66 | 1184 | 2815 | 25844177 | 25842589 | 0.000000e+00 | 785 |
22 | TraesCS1A01G381900 | chr2A | 74.720 | 1250 | 244 | 34 | 1184 | 2405 | 16497187 | 16495982 | 3.040000e-135 | 492 |
23 | TraesCS1A01G381900 | chr2A | 97.701 | 174 | 3 | 1 | 3219 | 3392 | 610312992 | 610312820 | 7.120000e-77 | 298 |
24 | TraesCS1A01G381900 | chr6A | 98.802 | 167 | 2 | 0 | 3226 | 3392 | 565703297 | 565703131 | 7.120000e-77 | 298 |
25 | TraesCS1A01G381900 | chr6A | 95.213 | 188 | 7 | 2 | 3205 | 3392 | 187043316 | 187043131 | 2.560000e-76 | 296 |
26 | TraesCS1A01G381900 | chr3A | 98.246 | 171 | 2 | 1 | 3223 | 3392 | 440230045 | 440230215 | 7.120000e-77 | 298 |
27 | TraesCS1A01G381900 | chr5B | 89.427 | 227 | 12 | 6 | 3015 | 3230 | 403184273 | 403184048 | 3.330000e-70 | 276 |
28 | TraesCS1A01G381900 | chr5D | 88.261 | 230 | 13 | 6 | 3015 | 3233 | 342957309 | 342957083 | 2.600000e-66 | 263 |
29 | TraesCS1A01G381900 | chr7A | 75.758 | 363 | 44 | 23 | 2299 | 2646 | 5049503 | 5049836 | 3.530000e-30 | 143 |
30 | TraesCS1A01G381900 | chr7A | 81.679 | 131 | 16 | 6 | 2299 | 2422 | 4903491 | 4903620 | 5.990000e-18 | 102 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G381900 | chr1A | 552215524 | 552218915 | 3391 | False | 2824.000000 | 4534 | 100.000 | 1 | 3392 | 2 | chr1A.!!$F1 | 3391 |
1 | TraesCS1A01G381900 | chr1D | 461141896 | 461145099 | 3203 | False | 1171.666667 | 2837 | 87.726 | 1 | 3233 | 3 | chr1D.!!$F1 | 3232 |
2 | TraesCS1A01G381900 | chr1B | 633351953 | 633354124 | 2171 | False | 1069.000000 | 1663 | 88.159 | 1215 | 2955 | 2 | chr1B.!!$F2 | 1740 |
3 | TraesCS1A01G381900 | chr4A | 738741848 | 738743443 | 1595 | True | 1118.000000 | 1118 | 79.717 | 1053 | 2646 | 1 | chr4A.!!$R3 | 1593 |
4 | TraesCS1A01G381900 | chrUn | 108303530 | 108305136 | 1606 | True | 1050.000000 | 1050 | 78.967 | 1184 | 2765 | 1 | chrUn.!!$R1 | 1581 |
5 | TraesCS1A01G381900 | chr4B | 665919807 | 665921430 | 1623 | False | 987.000000 | 987 | 78.229 | 1167 | 2765 | 1 | chr4B.!!$F2 | 1598 |
6 | TraesCS1A01G381900 | chr4B | 625979695 | 625981062 | 1367 | False | 582.000000 | 582 | 75.018 | 1040 | 2395 | 1 | chr4B.!!$F1 | 1355 |
7 | TraesCS1A01G381900 | chr5A | 705943739 | 705945436 | 1697 | False | 924.000000 | 924 | 77.193 | 1053 | 2773 | 1 | chr5A.!!$F1 | 1720 |
8 | TraesCS1A01G381900 | chr2D | 14126305 | 14127929 | 1624 | True | 891.000000 | 891 | 77.098 | 1184 | 2815 | 1 | chr2D.!!$R1 | 1631 |
9 | TraesCS1A01G381900 | chr7D | 45837512 | 45838778 | 1266 | True | 852.000000 | 852 | 79.176 | 1200 | 2463 | 1 | chr7D.!!$R1 | 1263 |
10 | TraesCS1A01G381900 | chr2B | 25842589 | 25844177 | 1588 | True | 785.000000 | 785 | 76.176 | 1184 | 2815 | 1 | chr2B.!!$R1 | 1631 |
11 | TraesCS1A01G381900 | chr2A | 16495982 | 16497187 | 1205 | True | 492.000000 | 492 | 74.720 | 1184 | 2405 | 1 | chr2A.!!$R1 | 1221 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
977 | 1298 | 0.035036 | TCACTCACTCCGTCGACTCT | 59.965 | 55.0 | 14.7 | 0.0 | 0.0 | 3.24 | F |
1161 | 1512 | 0.034477 | CCCCTACCATCACAACCACC | 60.034 | 60.0 | 0.0 | 0.0 | 0.0 | 4.61 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2289 | 2774 | 0.108992 | CGTCGAATTTCCCCGAGACA | 60.109 | 55.0 | 0.00 | 0.0 | 35.31 | 3.41 | R |
3019 | 4055 | 0.898789 | GTGAGGAGACGGTCAGGGAA | 60.899 | 60.0 | 11.27 | 0.0 | 0.00 | 3.97 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
46 | 48 | 9.638239 | TTATTCTAAAACAATTTAGCAAGGCAG | 57.362 | 29.630 | 3.95 | 0.00 | 45.03 | 4.85 |
50 | 53 | 8.677300 | TCTAAAACAATTTAGCAAGGCAGATAG | 58.323 | 33.333 | 3.95 | 0.00 | 45.03 | 2.08 |
53 | 56 | 5.256474 | ACAATTTAGCAAGGCAGATAGTGT | 58.744 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
67 | 70 | 6.317391 | GGCAGATAGTGTTTCAATAAGCTCTT | 59.683 | 38.462 | 0.00 | 0.00 | 0.00 | 2.85 |
81 | 84 | 8.796475 | TCAATAAGCTCTTCAAGTTAAAAGCAT | 58.204 | 29.630 | 0.00 | 0.00 | 32.25 | 3.79 |
82 | 85 | 9.415544 | CAATAAGCTCTTCAAGTTAAAAGCATT | 57.584 | 29.630 | 0.00 | 0.00 | 32.25 | 3.56 |
88 | 91 | 7.568315 | GCTCTTCAAGTTAAAAGCATTGAAAGC | 60.568 | 37.037 | 12.94 | 12.94 | 40.17 | 3.51 |
93 | 96 | 7.702772 | TCAAGTTAAAAGCATTGAAAGCGTTTA | 59.297 | 29.630 | 8.89 | 8.89 | 42.21 | 2.01 |
133 | 441 | 9.638239 | GTAACACCAACATTTGATACATGATTT | 57.362 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
177 | 485 | 3.679980 | CCTGTTCATCTTGTAGTGTTCGG | 59.320 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
191 | 499 | 7.383687 | TGTAGTGTTCGGACAAAAATCTATCT | 58.616 | 34.615 | 0.00 | 0.00 | 37.57 | 1.98 |
212 | 520 | 9.186323 | CTATCTGTAACTCCTAATGATTCAACG | 57.814 | 37.037 | 0.00 | 0.00 | 0.00 | 4.10 |
213 | 521 | 7.165460 | TCTGTAACTCCTAATGATTCAACGA | 57.835 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
215 | 523 | 7.759886 | TCTGTAACTCCTAATGATTCAACGAAG | 59.240 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
221 | 531 | 9.014297 | ACTCCTAATGATTCAACGAAGAAAAAT | 57.986 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
222 | 532 | 9.282247 | CTCCTAATGATTCAACGAAGAAAAATG | 57.718 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
229 | 539 | 7.902403 | TGATTCAACGAAGAAAAATGCAAAAAC | 59.098 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
234 | 544 | 5.064579 | ACGAAGAAAAATGCAAAAACCAAGG | 59.935 | 36.000 | 0.00 | 0.00 | 0.00 | 3.61 |
235 | 545 | 4.898829 | AGAAAAATGCAAAAACCAAGGC | 57.101 | 36.364 | 0.00 | 0.00 | 0.00 | 4.35 |
237 | 547 | 2.611225 | AAATGCAAAAACCAAGGCGA | 57.389 | 40.000 | 0.00 | 0.00 | 0.00 | 5.54 |
239 | 549 | 1.327303 | ATGCAAAAACCAAGGCGAGA | 58.673 | 45.000 | 0.00 | 0.00 | 0.00 | 4.04 |
249 | 559 | 2.161609 | ACCAAGGCGAGAAATTTTAGCG | 59.838 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
267 | 577 | 1.404181 | GCGTGGAGCTAACTCATGTGA | 60.404 | 52.381 | 0.94 | 0.00 | 45.42 | 3.58 |
327 | 637 | 9.903682 | CAATATTCCCATGATACTGAATTTGTC | 57.096 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
329 | 639 | 9.872684 | ATATTCCCATGATACTGAATTTGTCTT | 57.127 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
333 | 643 | 9.699410 | TCCCATGATACTGAATTTGTCTTTATT | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
408 | 718 | 9.772973 | AAAATATAGATTCGTATTGTGGCTACA | 57.227 | 29.630 | 0.00 | 0.00 | 34.31 | 2.74 |
461 | 782 | 4.933400 | ACTGTACAAACCGAATCACCATAC | 59.067 | 41.667 | 0.00 | 0.00 | 0.00 | 2.39 |
462 | 783 | 4.895961 | TGTACAAACCGAATCACCATACA | 58.104 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
490 | 811 | 2.798145 | GCAAACTGAACGGAAACTTGGG | 60.798 | 50.000 | 0.00 | 0.00 | 0.00 | 4.12 |
491 | 812 | 2.425668 | CAAACTGAACGGAAACTTGGGT | 59.574 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
562 | 883 | 0.039527 | CGCAACAAAGTTAGCCCACC | 60.040 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
563 | 884 | 1.036707 | GCAACAAAGTTAGCCCACCA | 58.963 | 50.000 | 0.00 | 0.00 | 0.00 | 4.17 |
564 | 885 | 1.000274 | GCAACAAAGTTAGCCCACCAG | 60.000 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
565 | 886 | 2.582052 | CAACAAAGTTAGCCCACCAGA | 58.418 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
566 | 887 | 2.271944 | ACAAAGTTAGCCCACCAGAC | 57.728 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
567 | 888 | 1.493022 | ACAAAGTTAGCCCACCAGACA | 59.507 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
568 | 889 | 2.154462 | CAAAGTTAGCCCACCAGACAG | 58.846 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
569 | 890 | 0.693049 | AAGTTAGCCCACCAGACAGG | 59.307 | 55.000 | 0.00 | 0.00 | 45.67 | 4.00 |
570 | 891 | 0.178903 | AGTTAGCCCACCAGACAGGA | 60.179 | 55.000 | 0.00 | 0.00 | 41.22 | 3.86 |
571 | 892 | 0.912486 | GTTAGCCCACCAGACAGGAT | 59.088 | 55.000 | 0.00 | 0.00 | 41.22 | 3.24 |
572 | 893 | 1.134371 | GTTAGCCCACCAGACAGGATC | 60.134 | 57.143 | 0.00 | 0.00 | 41.22 | 3.36 |
573 | 894 | 0.691078 | TAGCCCACCAGACAGGATCC | 60.691 | 60.000 | 2.48 | 2.48 | 41.22 | 3.36 |
574 | 895 | 2.903357 | CCCACCAGACAGGATCCG | 59.097 | 66.667 | 5.98 | 3.99 | 41.22 | 4.18 |
575 | 896 | 1.685765 | CCCACCAGACAGGATCCGA | 60.686 | 63.158 | 5.98 | 0.00 | 41.22 | 4.55 |
576 | 897 | 1.050988 | CCCACCAGACAGGATCCGAT | 61.051 | 60.000 | 5.98 | 0.00 | 41.22 | 4.18 |
577 | 898 | 0.833287 | CCACCAGACAGGATCCGATT | 59.167 | 55.000 | 5.98 | 0.00 | 41.22 | 3.34 |
578 | 899 | 1.210478 | CCACCAGACAGGATCCGATTT | 59.790 | 52.381 | 5.98 | 0.00 | 41.22 | 2.17 |
579 | 900 | 2.555199 | CACCAGACAGGATCCGATTTC | 58.445 | 52.381 | 5.98 | 1.49 | 41.22 | 2.17 |
580 | 901 | 2.169352 | CACCAGACAGGATCCGATTTCT | 59.831 | 50.000 | 5.98 | 3.94 | 41.22 | 2.52 |
581 | 902 | 2.432510 | ACCAGACAGGATCCGATTTCTC | 59.567 | 50.000 | 5.98 | 0.00 | 41.22 | 2.87 |
582 | 903 | 2.432146 | CCAGACAGGATCCGATTTCTCA | 59.568 | 50.000 | 5.98 | 0.00 | 41.22 | 3.27 |
583 | 904 | 3.118629 | CCAGACAGGATCCGATTTCTCAA | 60.119 | 47.826 | 5.98 | 0.00 | 41.22 | 3.02 |
584 | 905 | 4.507710 | CAGACAGGATCCGATTTCTCAAA | 58.492 | 43.478 | 5.98 | 0.00 | 0.00 | 2.69 |
585 | 906 | 4.937620 | CAGACAGGATCCGATTTCTCAAAA | 59.062 | 41.667 | 5.98 | 0.00 | 0.00 | 2.44 |
586 | 907 | 5.412594 | CAGACAGGATCCGATTTCTCAAAAA | 59.587 | 40.000 | 5.98 | 0.00 | 0.00 | 1.94 |
957 | 1278 | 2.315176 | AGACAGGATCCAGAATCTCCG | 58.685 | 52.381 | 15.82 | 0.00 | 34.56 | 4.63 |
964 | 1285 | 2.215942 | TCCAGAATCTCCGTCACTCA | 57.784 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
969 | 1290 | 0.811915 | AATCTCCGTCACTCACTCCG | 59.188 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
977 | 1298 | 0.035036 | TCACTCACTCCGTCGACTCT | 59.965 | 55.000 | 14.70 | 0.00 | 0.00 | 3.24 |
982 | 1303 | 0.109226 | CACTCCGTCGACTCTTTCCC | 60.109 | 60.000 | 14.70 | 0.00 | 0.00 | 3.97 |
984 | 1305 | 0.966370 | CTCCGTCGACTCTTTCCCCT | 60.966 | 60.000 | 14.70 | 0.00 | 0.00 | 4.79 |
985 | 1306 | 0.964358 | TCCGTCGACTCTTTCCCCTC | 60.964 | 60.000 | 14.70 | 0.00 | 0.00 | 4.30 |
986 | 1307 | 1.511768 | CGTCGACTCTTTCCCCTCC | 59.488 | 63.158 | 14.70 | 0.00 | 0.00 | 4.30 |
987 | 1308 | 1.898885 | GTCGACTCTTTCCCCTCCC | 59.101 | 63.158 | 8.70 | 0.00 | 0.00 | 4.30 |
988 | 1309 | 1.681327 | TCGACTCTTTCCCCTCCCG | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
989 | 1310 | 1.681327 | CGACTCTTTCCCCTCCCGA | 60.681 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
990 | 1311 | 1.668101 | CGACTCTTTCCCCTCCCGAG | 61.668 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1020 | 1341 | 2.743928 | GGGAGTCAACTGCTGCCG | 60.744 | 66.667 | 0.00 | 0.00 | 34.86 | 5.69 |
1067 | 1418 | 1.292223 | CGTCCACCACCACCACTAG | 59.708 | 63.158 | 0.00 | 0.00 | 0.00 | 2.57 |
1109 | 1460 | 2.055042 | GCACCACCACCACAACCAA | 61.055 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
1114 | 1465 | 0.898320 | CACCACCACAACCAAAACCA | 59.102 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1115 | 1466 | 0.899019 | ACCACCACAACCAAAACCAC | 59.101 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
1116 | 1467 | 0.176910 | CCACCACAACCAAAACCACC | 59.823 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1117 | 1468 | 1.190643 | CACCACAACCAAAACCACCT | 58.809 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1118 | 1469 | 1.136110 | CACCACAACCAAAACCACCTC | 59.864 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1119 | 1470 | 0.750249 | CCACAACCAAAACCACCTCC | 59.250 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1161 | 1512 | 0.034477 | CCCCTACCATCACAACCACC | 60.034 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1162 | 1513 | 0.695924 | CCCTACCATCACAACCACCA | 59.304 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
1163 | 1514 | 1.340017 | CCCTACCATCACAACCACCAG | 60.340 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
1608 | 2052 | 4.397832 | GCCGCCGTGAACCCCTTA | 62.398 | 66.667 | 0.00 | 0.00 | 0.00 | 2.69 |
1979 | 2458 | 0.798776 | GTGAAGGTGCACGGATTCAG | 59.201 | 55.000 | 23.18 | 0.00 | 32.64 | 3.02 |
1986 | 2465 | 1.873591 | GTGCACGGATTCAGTTTCAGT | 59.126 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2289 | 2774 | 3.136626 | AGACCTTGGTGCTTGAGTTACTT | 59.863 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
2367 | 2861 | 1.371467 | TGGTTGGTGATGATGGGACT | 58.629 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2374 | 2871 | 3.266513 | TGGTGATGATGGGACTCATGAAA | 59.733 | 43.478 | 0.00 | 0.00 | 36.01 | 2.69 |
2376 | 2873 | 4.518211 | GGTGATGATGGGACTCATGAAATC | 59.482 | 45.833 | 0.00 | 0.00 | 36.01 | 2.17 |
2384 | 2881 | 4.010349 | GGGACTCATGAAATCGAAGGTTT | 58.990 | 43.478 | 0.00 | 0.00 | 0.00 | 3.27 |
2386 | 2883 | 5.646360 | GGGACTCATGAAATCGAAGGTTTTA | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
2425 | 2925 | 6.567701 | GCTGTTTGTCATACGAGGAAATGAAA | 60.568 | 38.462 | 0.00 | 0.00 | 34.06 | 2.69 |
2483 | 3022 | 9.793252 | AATTACTCTGTTGATGCAAAATGATAC | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2484 | 3023 | 8.565896 | TTACTCTGTTGATGCAAAATGATACT | 57.434 | 30.769 | 0.00 | 0.00 | 0.00 | 2.12 |
2485 | 3024 | 9.665719 | TTACTCTGTTGATGCAAAATGATACTA | 57.334 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
2486 | 3025 | 7.978982 | ACTCTGTTGATGCAAAATGATACTAC | 58.021 | 34.615 | 0.00 | 0.00 | 0.00 | 2.73 |
2489 | 3028 | 9.665719 | TCTGTTGATGCAAAATGATACTACTTA | 57.334 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2490 | 3029 | 9.926751 | CTGTTGATGCAAAATGATACTACTTAG | 57.073 | 33.333 | 0.00 | 0.00 | 0.00 | 2.18 |
2494 | 3033 | 8.777413 | TGATGCAAAATGATACTACTTAGATGC | 58.223 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
2497 | 3036 | 9.177608 | TGCAAAATGATACTACTTAGATGCTTT | 57.822 | 29.630 | 0.00 | 0.00 | 0.00 | 3.51 |
2525 | 3064 | 6.051717 | ACTGGAAGATCATTCCTTTGTATCG | 58.948 | 40.000 | 18.73 | 0.00 | 39.31 | 2.92 |
2536 | 3075 | 9.793252 | TCATTCCTTTGTATCGTAAGTAGTAAC | 57.207 | 33.333 | 0.00 | 0.00 | 39.48 | 2.50 |
2539 | 3078 | 5.456822 | CCTTTGTATCGTAAGTAGTAACGGC | 59.543 | 44.000 | 0.00 | 0.00 | 39.52 | 5.68 |
2555 | 3095 | 7.069877 | AGTAACGGCTATTCCCATATAAACA | 57.930 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2656 | 3662 | 8.446273 | CAAACTTTCTGTGGAATAGTACTGATG | 58.554 | 37.037 | 5.39 | 0.00 | 0.00 | 3.07 |
2670 | 3676 | 5.003160 | AGTACTGATGTGTTGCATTTGCTA | 58.997 | 37.500 | 0.00 | 0.00 | 42.66 | 3.49 |
2678 | 3684 | 1.405463 | GTTGCATTTGCTACTAGGCCC | 59.595 | 52.381 | 0.00 | 0.00 | 42.12 | 5.80 |
2699 | 3714 | 8.999895 | AGGCCCTTGACTAATTTATTTCTACTA | 58.000 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
2700 | 3715 | 9.274206 | GGCCCTTGACTAATTTATTTCTACTAG | 57.726 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
2701 | 3716 | 9.833917 | GCCCTTGACTAATTTATTTCTACTAGT | 57.166 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2740 | 3755 | 9.185192 | GTTGGTCATTTATTGAGAGAAAAACAG | 57.815 | 33.333 | 0.00 | 0.00 | 34.17 | 3.16 |
2765 | 3780 | 6.031751 | AGACTGCTAGTTCTGGAAAGTAAG | 57.968 | 41.667 | 0.00 | 0.00 | 0.00 | 2.34 |
2872 | 3888 | 3.498397 | TCTTCCTCTTTGACGATGCAAAC | 59.502 | 43.478 | 0.00 | 0.00 | 34.35 | 2.93 |
2884 | 3900 | 5.288232 | TGACGATGCAAACTTTCTTGTTTTG | 59.712 | 36.000 | 0.00 | 0.00 | 37.98 | 2.44 |
2895 | 3911 | 7.903995 | ACTTTCTTGTTTTGCATTTCTTTCA | 57.096 | 28.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2897 | 3913 | 5.947503 | TCTTGTTTTGCATTTCTTTCACG | 57.052 | 34.783 | 0.00 | 0.00 | 0.00 | 4.35 |
2907 | 3923 | 4.549458 | CATTTCTTTCACGGCACAATCTT | 58.451 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2961 | 3996 | 9.665719 | ACCTTTGTTGTTCTTTGTTGAATAAAT | 57.334 | 25.926 | 0.00 | 0.00 | 30.93 | 1.40 |
3001 | 4037 | 9.974980 | TTAACTTCCTTTTGTTGAATATGTTCC | 57.025 | 29.630 | 0.00 | 0.00 | 33.26 | 3.62 |
3003 | 4039 | 6.782494 | ACTTCCTTTTGTTGAATATGTTCCCT | 59.218 | 34.615 | 0.00 | 0.00 | 33.26 | 4.20 |
3008 | 4044 | 7.362920 | CCTTTTGTTGAATATGTTCCCTACCTG | 60.363 | 40.741 | 0.00 | 0.00 | 33.26 | 4.00 |
3010 | 4046 | 5.989477 | TGTTGAATATGTTCCCTACCTGAG | 58.011 | 41.667 | 0.00 | 0.00 | 33.26 | 3.35 |
3019 | 4055 | 5.467738 | TGTTCCCTACCTGAGTCATATGAT | 58.532 | 41.667 | 9.02 | 0.00 | 0.00 | 2.45 |
3020 | 4056 | 5.905331 | TGTTCCCTACCTGAGTCATATGATT | 59.095 | 40.000 | 9.02 | 4.24 | 0.00 | 2.57 |
3029 | 4065 | 3.321968 | TGAGTCATATGATTCCCTGACCG | 59.678 | 47.826 | 21.55 | 0.00 | 39.00 | 4.79 |
3031 | 4067 | 3.322254 | AGTCATATGATTCCCTGACCGTC | 59.678 | 47.826 | 9.02 | 0.00 | 39.00 | 4.79 |
3036 | 4072 | 0.747852 | GATTCCCTGACCGTCTCCTC | 59.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3063 | 4099 | 9.979578 | ACAATATTTGTTGTTCATTGTGTATGT | 57.020 | 25.926 | 0.00 | 0.00 | 42.22 | 2.29 |
3066 | 4102 | 9.844790 | ATATTTGTTGTTCATTGTGTATGTCAG | 57.155 | 29.630 | 0.00 | 0.00 | 35.64 | 3.51 |
3073 | 4109 | 6.317391 | TGTTCATTGTGTATGTCAGTTGTCAA | 59.683 | 34.615 | 0.00 | 0.00 | 35.64 | 3.18 |
3081 | 4117 | 2.639065 | TGTCAGTTGTCAAGGGTGAAC | 58.361 | 47.619 | 0.00 | 0.00 | 34.87 | 3.18 |
3085 | 4121 | 4.213482 | GTCAGTTGTCAAGGGTGAACATAC | 59.787 | 45.833 | 0.00 | 0.00 | 34.87 | 2.39 |
3087 | 4123 | 4.578516 | CAGTTGTCAAGGGTGAACATACAA | 59.421 | 41.667 | 0.00 | 0.00 | 34.87 | 2.41 |
3090 | 4126 | 6.323739 | AGTTGTCAAGGGTGAACATACAAAAT | 59.676 | 34.615 | 0.00 | 0.00 | 34.87 | 1.82 |
3091 | 4127 | 6.083098 | TGTCAAGGGTGAACATACAAAATG | 57.917 | 37.500 | 0.00 | 0.00 | 34.87 | 2.32 |
3092 | 4128 | 5.596361 | TGTCAAGGGTGAACATACAAAATGT | 59.404 | 36.000 | 0.00 | 0.00 | 34.87 | 2.71 |
3093 | 4129 | 5.920273 | GTCAAGGGTGAACATACAAAATGTG | 59.080 | 40.000 | 0.00 | 0.00 | 34.87 | 3.21 |
3094 | 4130 | 4.519540 | AGGGTGAACATACAAAATGTGC | 57.480 | 40.909 | 0.00 | 0.00 | 31.80 | 4.57 |
3132 | 4169 | 3.003689 | GGCATGAAACATACCCAGAATCG | 59.996 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
3151 | 4188 | 2.101750 | TCGTGAGGTTTGTGAAGCTGTA | 59.898 | 45.455 | 0.00 | 0.00 | 43.27 | 2.74 |
3158 | 4195 | 5.376625 | AGGTTTGTGAAGCTGTAGAAATCA | 58.623 | 37.500 | 6.25 | 0.00 | 41.77 | 2.57 |
3161 | 4198 | 4.952262 | TGTGAAGCTGTAGAAATCATGC | 57.048 | 40.909 | 0.00 | 0.00 | 0.00 | 4.06 |
3164 | 4201 | 5.814188 | TGTGAAGCTGTAGAAATCATGCTAG | 59.186 | 40.000 | 0.00 | 0.00 | 0.00 | 3.42 |
3172 | 4209 | 7.470702 | GCTGTAGAAATCATGCTAGTCCTTAGA | 60.471 | 40.741 | 0.00 | 0.00 | 0.00 | 2.10 |
3185 | 4222 | 5.121380 | AGTCCTTAGATACAACCGGACTA | 57.879 | 43.478 | 9.46 | 0.00 | 46.75 | 2.59 |
3186 | 4223 | 4.886489 | AGTCCTTAGATACAACCGGACTAC | 59.114 | 45.833 | 9.46 | 0.00 | 46.75 | 2.73 |
3187 | 4224 | 4.641989 | GTCCTTAGATACAACCGGACTACA | 59.358 | 45.833 | 9.46 | 0.00 | 38.26 | 2.74 |
3191 | 4228 | 3.288964 | AGATACAACCGGACTACAGGAG | 58.711 | 50.000 | 9.46 | 0.00 | 35.41 | 3.69 |
3192 | 4229 | 2.885135 | TACAACCGGACTACAGGAGA | 57.115 | 50.000 | 9.46 | 0.00 | 35.41 | 3.71 |
3198 | 4235 | 4.732672 | ACCGGACTACAGGAGAAAATAC | 57.267 | 45.455 | 9.46 | 0.00 | 35.41 | 1.89 |
3199 | 4236 | 4.351127 | ACCGGACTACAGGAGAAAATACT | 58.649 | 43.478 | 9.46 | 0.00 | 35.41 | 2.12 |
3234 | 4271 | 9.783081 | ATCATCATTATACTGTATGAAAGCACA | 57.217 | 29.630 | 10.51 | 0.00 | 34.69 | 4.57 |
3235 | 4272 | 9.612066 | TCATCATTATACTGTATGAAAGCACAA | 57.388 | 29.630 | 10.51 | 0.00 | 34.69 | 3.33 |
3236 | 4273 | 9.874215 | CATCATTATACTGTATGAAAGCACAAG | 57.126 | 33.333 | 10.51 | 0.00 | 34.69 | 3.16 |
3237 | 4274 | 9.618890 | ATCATTATACTGTATGAAAGCACAAGT | 57.381 | 29.630 | 10.51 | 0.00 | 34.69 | 3.16 |
3238 | 4275 | 8.882736 | TCATTATACTGTATGAAAGCACAAGTG | 58.117 | 33.333 | 10.51 | 0.00 | 0.00 | 3.16 |
3249 | 4286 | 3.540211 | CACAAGTGCTCCCTAGGTG | 57.460 | 57.895 | 8.29 | 1.07 | 0.00 | 4.00 |
3250 | 4287 | 0.036010 | CACAAGTGCTCCCTAGGTGG | 60.036 | 60.000 | 8.29 | 0.71 | 0.00 | 4.61 |
3251 | 4288 | 0.473886 | ACAAGTGCTCCCTAGGTGGT | 60.474 | 55.000 | 8.29 | 0.00 | 0.00 | 4.16 |
3252 | 4289 | 0.693049 | CAAGTGCTCCCTAGGTGGTT | 59.307 | 55.000 | 8.29 | 0.00 | 0.00 | 3.67 |
3253 | 4290 | 1.073923 | CAAGTGCTCCCTAGGTGGTTT | 59.926 | 52.381 | 8.29 | 0.00 | 0.00 | 3.27 |
3254 | 4291 | 1.446016 | AGTGCTCCCTAGGTGGTTTT | 58.554 | 50.000 | 8.29 | 0.00 | 0.00 | 2.43 |
3255 | 4292 | 1.073923 | AGTGCTCCCTAGGTGGTTTTG | 59.926 | 52.381 | 8.29 | 0.00 | 0.00 | 2.44 |
3256 | 4293 | 1.073284 | GTGCTCCCTAGGTGGTTTTGA | 59.927 | 52.381 | 8.29 | 0.00 | 0.00 | 2.69 |
3257 | 4294 | 1.992557 | TGCTCCCTAGGTGGTTTTGAT | 59.007 | 47.619 | 8.29 | 0.00 | 0.00 | 2.57 |
3258 | 4295 | 3.054655 | GTGCTCCCTAGGTGGTTTTGATA | 60.055 | 47.826 | 8.29 | 0.00 | 0.00 | 2.15 |
3259 | 4296 | 3.589735 | TGCTCCCTAGGTGGTTTTGATAA | 59.410 | 43.478 | 8.29 | 0.00 | 0.00 | 1.75 |
3260 | 4297 | 4.229582 | TGCTCCCTAGGTGGTTTTGATAAT | 59.770 | 41.667 | 8.29 | 0.00 | 0.00 | 1.28 |
3261 | 4298 | 5.201243 | GCTCCCTAGGTGGTTTTGATAATT | 58.799 | 41.667 | 8.29 | 0.00 | 0.00 | 1.40 |
3262 | 4299 | 5.067805 | GCTCCCTAGGTGGTTTTGATAATTG | 59.932 | 44.000 | 8.29 | 0.00 | 0.00 | 2.32 |
3263 | 4300 | 6.395780 | TCCCTAGGTGGTTTTGATAATTGA | 57.604 | 37.500 | 8.29 | 0.00 | 0.00 | 2.57 |
3264 | 4301 | 6.980577 | TCCCTAGGTGGTTTTGATAATTGAT | 58.019 | 36.000 | 8.29 | 0.00 | 0.00 | 2.57 |
3265 | 4302 | 6.833416 | TCCCTAGGTGGTTTTGATAATTGATG | 59.167 | 38.462 | 8.29 | 0.00 | 0.00 | 3.07 |
3266 | 4303 | 6.833416 | CCCTAGGTGGTTTTGATAATTGATGA | 59.167 | 38.462 | 8.29 | 0.00 | 0.00 | 2.92 |
3267 | 4304 | 7.201821 | CCCTAGGTGGTTTTGATAATTGATGAC | 60.202 | 40.741 | 8.29 | 0.00 | 0.00 | 3.06 |
3268 | 4305 | 7.339212 | CCTAGGTGGTTTTGATAATTGATGACA | 59.661 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
3269 | 4306 | 7.537596 | AGGTGGTTTTGATAATTGATGACAA | 57.462 | 32.000 | 0.00 | 0.00 | 40.42 | 3.18 |
3270 | 4307 | 7.378181 | AGGTGGTTTTGATAATTGATGACAAC | 58.622 | 34.615 | 0.00 | 0.00 | 38.90 | 3.32 |
3271 | 4308 | 7.015098 | AGGTGGTTTTGATAATTGATGACAACA | 59.985 | 33.333 | 0.00 | 0.00 | 38.90 | 3.33 |
3272 | 4309 | 7.818930 | GGTGGTTTTGATAATTGATGACAACAT | 59.181 | 33.333 | 0.00 | 0.00 | 38.90 | 2.71 |
3273 | 4310 | 9.853555 | GTGGTTTTGATAATTGATGACAACATA | 57.146 | 29.630 | 0.00 | 0.00 | 38.90 | 2.29 |
3304 | 4341 | 8.389779 | TGTTGAACTAACATTTCAATCTAGCA | 57.610 | 30.769 | 0.00 | 0.00 | 44.07 | 3.49 |
3305 | 4342 | 9.013229 | TGTTGAACTAACATTTCAATCTAGCAT | 57.987 | 29.630 | 0.00 | 0.00 | 44.07 | 3.79 |
3306 | 4343 | 9.282247 | GTTGAACTAACATTTCAATCTAGCATG | 57.718 | 33.333 | 1.17 | 0.00 | 43.16 | 4.06 |
3307 | 4344 | 8.565896 | TGAACTAACATTTCAATCTAGCATGT | 57.434 | 30.769 | 0.00 | 0.00 | 29.89 | 3.21 |
3308 | 4345 | 9.013229 | TGAACTAACATTTCAATCTAGCATGTT | 57.987 | 29.630 | 0.00 | 0.00 | 40.38 | 2.71 |
3309 | 4346 | 9.846248 | GAACTAACATTTCAATCTAGCATGTTT | 57.154 | 29.630 | 1.46 | 0.00 | 38.64 | 2.83 |
3310 | 4347 | 9.846248 | AACTAACATTTCAATCTAGCATGTTTC | 57.154 | 29.630 | 1.46 | 0.00 | 38.64 | 2.78 |
3311 | 4348 | 9.013229 | ACTAACATTTCAATCTAGCATGTTTCA | 57.987 | 29.630 | 1.46 | 0.00 | 38.64 | 2.69 |
3312 | 4349 | 9.499585 | CTAACATTTCAATCTAGCATGTTTCAG | 57.500 | 33.333 | 1.46 | 0.00 | 38.64 | 3.02 |
3313 | 4350 | 7.692460 | ACATTTCAATCTAGCATGTTTCAGA | 57.308 | 32.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3314 | 4351 | 8.289939 | ACATTTCAATCTAGCATGTTTCAGAT | 57.710 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
3315 | 4352 | 9.399797 | ACATTTCAATCTAGCATGTTTCAGATA | 57.600 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
3318 | 4355 | 9.453572 | TTTCAATCTAGCATGTTTCAGATAAGT | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
3319 | 4356 | 9.453572 | TTCAATCTAGCATGTTTCAGATAAGTT | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
3320 | 4357 | 9.102757 | TCAATCTAGCATGTTTCAGATAAGTTC | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
3321 | 4358 | 8.886719 | CAATCTAGCATGTTTCAGATAAGTTCA | 58.113 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
3322 | 4359 | 9.453572 | AATCTAGCATGTTTCAGATAAGTTCAA | 57.546 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
3323 | 4360 | 8.256611 | TCTAGCATGTTTCAGATAAGTTCAAC | 57.743 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
3324 | 4361 | 6.882610 | AGCATGTTTCAGATAAGTTCAACA | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
3325 | 4362 | 7.275888 | AGCATGTTTCAGATAAGTTCAACAA | 57.724 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3326 | 4363 | 7.889469 | AGCATGTTTCAGATAAGTTCAACAAT | 58.111 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
3327 | 4364 | 7.811236 | AGCATGTTTCAGATAAGTTCAACAATG | 59.189 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
3328 | 4365 | 7.062605 | GCATGTTTCAGATAAGTTCAACAATGG | 59.937 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3329 | 4366 | 7.815840 | TGTTTCAGATAAGTTCAACAATGGA | 57.184 | 32.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3330 | 4367 | 7.874940 | TGTTTCAGATAAGTTCAACAATGGAG | 58.125 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
3331 | 4368 | 7.502226 | TGTTTCAGATAAGTTCAACAATGGAGT | 59.498 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
3332 | 4369 | 7.439157 | TTCAGATAAGTTCAACAATGGAGTG | 57.561 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3333 | 4370 | 5.939883 | TCAGATAAGTTCAACAATGGAGTGG | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3334 | 4371 | 4.702131 | AGATAAGTTCAACAATGGAGTGGC | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
3335 | 4372 | 2.363306 | AGTTCAACAATGGAGTGGCA | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
3336 | 4373 | 2.880443 | AGTTCAACAATGGAGTGGCAT | 58.120 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
3337 | 4374 | 2.559668 | AGTTCAACAATGGAGTGGCATG | 59.440 | 45.455 | 0.00 | 0.00 | 0.00 | 4.06 |
3338 | 4375 | 1.548081 | TCAACAATGGAGTGGCATGG | 58.452 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
3339 | 4376 | 1.075212 | TCAACAATGGAGTGGCATGGA | 59.925 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
3340 | 4377 | 1.203052 | CAACAATGGAGTGGCATGGAC | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
3341 | 4378 | 0.700564 | ACAATGGAGTGGCATGGACT | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
3342 | 4379 | 1.915489 | ACAATGGAGTGGCATGGACTA | 59.085 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
3343 | 4380 | 2.308570 | ACAATGGAGTGGCATGGACTAA | 59.691 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
3344 | 4381 | 3.245229 | ACAATGGAGTGGCATGGACTAAA | 60.245 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
3345 | 4382 | 2.787473 | TGGAGTGGCATGGACTAAAG | 57.213 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3346 | 4383 | 1.281867 | TGGAGTGGCATGGACTAAAGG | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
3347 | 4384 | 1.282157 | GGAGTGGCATGGACTAAAGGT | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.50 |
3348 | 4385 | 2.633488 | GAGTGGCATGGACTAAAGGTC | 58.367 | 52.381 | 0.00 | 0.00 | 43.79 | 3.85 |
3349 | 4386 | 1.066143 | AGTGGCATGGACTAAAGGTCG | 60.066 | 52.381 | 0.00 | 0.00 | 45.35 | 4.79 |
3350 | 4387 | 0.981183 | TGGCATGGACTAAAGGTCGT | 59.019 | 50.000 | 0.00 | 0.00 | 45.35 | 4.34 |
3351 | 4388 | 1.338674 | TGGCATGGACTAAAGGTCGTG | 60.339 | 52.381 | 0.00 | 0.00 | 45.35 | 4.35 |
3352 | 4389 | 1.369625 | GCATGGACTAAAGGTCGTGG | 58.630 | 55.000 | 0.00 | 0.00 | 45.35 | 4.94 |
3353 | 4390 | 2.012051 | GCATGGACTAAAGGTCGTGGG | 61.012 | 57.143 | 0.00 | 0.00 | 45.35 | 4.61 |
3354 | 4391 | 1.553248 | CATGGACTAAAGGTCGTGGGA | 59.447 | 52.381 | 0.00 | 0.00 | 45.35 | 4.37 |
3355 | 4392 | 1.719529 | TGGACTAAAGGTCGTGGGAA | 58.280 | 50.000 | 0.00 | 0.00 | 45.35 | 3.97 |
3356 | 4393 | 1.345415 | TGGACTAAAGGTCGTGGGAAC | 59.655 | 52.381 | 0.00 | 0.00 | 45.35 | 3.62 |
3357 | 4394 | 1.622312 | GGACTAAAGGTCGTGGGAACT | 59.378 | 52.381 | 0.00 | 0.00 | 43.81 | 3.01 |
3358 | 4395 | 2.353505 | GGACTAAAGGTCGTGGGAACTC | 60.354 | 54.545 | 0.00 | 0.00 | 40.04 | 3.01 |
3359 | 4396 | 1.622312 | ACTAAAGGTCGTGGGAACTCC | 59.378 | 52.381 | 0.00 | 0.00 | 40.04 | 3.85 |
3360 | 4397 | 1.900486 | CTAAAGGTCGTGGGAACTCCT | 59.100 | 52.381 | 0.00 | 0.00 | 40.04 | 3.69 |
3361 | 4398 | 1.137697 | AAAGGTCGTGGGAACTCCTT | 58.862 | 50.000 | 0.00 | 0.00 | 40.04 | 3.36 |
3362 | 4399 | 0.685660 | AAGGTCGTGGGAACTCCTTC | 59.314 | 55.000 | 0.00 | 0.00 | 40.04 | 3.46 |
3363 | 4400 | 0.471211 | AGGTCGTGGGAACTCCTTCA | 60.471 | 55.000 | 0.00 | 0.00 | 34.17 | 3.02 |
3364 | 4401 | 0.395312 | GGTCGTGGGAACTCCTTCAA | 59.605 | 55.000 | 0.00 | 0.00 | 36.20 | 2.69 |
3365 | 4402 | 1.608283 | GGTCGTGGGAACTCCTTCAAG | 60.608 | 57.143 | 0.00 | 0.00 | 36.20 | 3.02 |
3366 | 4403 | 1.343465 | GTCGTGGGAACTCCTTCAAGA | 59.657 | 52.381 | 0.00 | 0.00 | 36.20 | 3.02 |
3367 | 4404 | 2.028020 | GTCGTGGGAACTCCTTCAAGAT | 60.028 | 50.000 | 0.00 | 0.00 | 36.20 | 2.40 |
3368 | 4405 | 2.028112 | TCGTGGGAACTCCTTCAAGATG | 60.028 | 50.000 | 0.00 | 0.00 | 36.20 | 2.90 |
3369 | 4406 | 2.087646 | GTGGGAACTCCTTCAAGATGC | 58.912 | 52.381 | 0.00 | 0.00 | 36.20 | 3.91 |
3370 | 4407 | 1.988107 | TGGGAACTCCTTCAAGATGCT | 59.012 | 47.619 | 0.00 | 0.00 | 36.20 | 3.79 |
3371 | 4408 | 3.055094 | GTGGGAACTCCTTCAAGATGCTA | 60.055 | 47.826 | 0.00 | 0.00 | 36.20 | 3.49 |
3372 | 4409 | 3.587061 | TGGGAACTCCTTCAAGATGCTAA | 59.413 | 43.478 | 0.00 | 0.00 | 36.20 | 3.09 |
3373 | 4410 | 4.195416 | GGGAACTCCTTCAAGATGCTAAG | 58.805 | 47.826 | 0.00 | 0.00 | 35.95 | 2.18 |
3374 | 4411 | 4.195416 | GGAACTCCTTCAAGATGCTAAGG | 58.805 | 47.826 | 0.00 | 0.00 | 41.00 | 2.69 |
3375 | 4412 | 4.080863 | GGAACTCCTTCAAGATGCTAAGGA | 60.081 | 45.833 | 0.00 | 0.00 | 45.04 | 3.36 |
3376 | 4413 | 4.479786 | ACTCCTTCAAGATGCTAAGGAC | 57.520 | 45.455 | 0.00 | 0.00 | 42.96 | 3.85 |
3377 | 4414 | 3.840666 | ACTCCTTCAAGATGCTAAGGACA | 59.159 | 43.478 | 0.00 | 0.00 | 42.96 | 4.02 |
3378 | 4415 | 4.287067 | ACTCCTTCAAGATGCTAAGGACAA | 59.713 | 41.667 | 0.00 | 0.00 | 42.96 | 3.18 |
3379 | 4416 | 5.221925 | ACTCCTTCAAGATGCTAAGGACAAA | 60.222 | 40.000 | 0.00 | 0.00 | 42.96 | 2.83 |
3380 | 4417 | 5.248640 | TCCTTCAAGATGCTAAGGACAAAG | 58.751 | 41.667 | 0.00 | 0.00 | 42.96 | 2.77 |
3381 | 4418 | 4.397417 | CCTTCAAGATGCTAAGGACAAAGG | 59.603 | 45.833 | 0.00 | 0.00 | 42.01 | 3.11 |
3382 | 4419 | 4.908601 | TCAAGATGCTAAGGACAAAGGA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 3.36 |
3383 | 4420 | 5.441718 | TCAAGATGCTAAGGACAAAGGAT | 57.558 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
3384 | 4421 | 5.819991 | TCAAGATGCTAAGGACAAAGGATT | 58.180 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
3385 | 4422 | 5.649395 | TCAAGATGCTAAGGACAAAGGATTG | 59.351 | 40.000 | 0.00 | 0.00 | 42.46 | 2.67 |
3386 | 4423 | 4.530875 | AGATGCTAAGGACAAAGGATTGG | 58.469 | 43.478 | 0.00 | 0.00 | 41.01 | 3.16 |
3387 | 4424 | 2.446435 | TGCTAAGGACAAAGGATTGGC | 58.554 | 47.619 | 0.00 | 0.00 | 44.37 | 4.52 |
3388 | 4425 | 2.041620 | TGCTAAGGACAAAGGATTGGCT | 59.958 | 45.455 | 0.00 | 0.00 | 44.51 | 4.75 |
3389 | 4426 | 3.265737 | TGCTAAGGACAAAGGATTGGCTA | 59.734 | 43.478 | 0.00 | 0.00 | 44.51 | 3.93 |
3390 | 4427 | 4.263727 | TGCTAAGGACAAAGGATTGGCTAA | 60.264 | 41.667 | 0.00 | 0.00 | 44.51 | 3.09 |
3391 | 4428 | 4.705023 | GCTAAGGACAAAGGATTGGCTAAA | 59.295 | 41.667 | 0.00 | 0.00 | 44.51 | 1.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
19 | 21 | 9.638239 | TGCCTTGCTAAATTGTTTTAGAATAAG | 57.362 | 29.630 | 9.14 | 8.92 | 44.75 | 1.73 |
22 | 24 | 7.895759 | TCTGCCTTGCTAAATTGTTTTAGAAT | 58.104 | 30.769 | 9.14 | 0.00 | 44.75 | 2.40 |
24 | 26 | 6.892658 | TCTGCCTTGCTAAATTGTTTTAGA | 57.107 | 33.333 | 9.14 | 0.00 | 44.75 | 2.10 |
26 | 28 | 8.243426 | CACTATCTGCCTTGCTAAATTGTTTTA | 58.757 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
27 | 29 | 7.092716 | CACTATCTGCCTTGCTAAATTGTTTT | 58.907 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
43 | 45 | 6.917217 | AGAGCTTATTGAAACACTATCTGC | 57.083 | 37.500 | 0.00 | 0.00 | 0.00 | 4.26 |
46 | 48 | 8.940952 | ACTTGAAGAGCTTATTGAAACACTATC | 58.059 | 33.333 | 0.00 | 0.00 | 0.00 | 2.08 |
50 | 53 | 9.730420 | TTTAACTTGAAGAGCTTATTGAAACAC | 57.270 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
53 | 56 | 9.463443 | GCTTTTAACTTGAAGAGCTTATTGAAA | 57.537 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
67 | 70 | 5.587289 | ACGCTTTCAATGCTTTTAACTTGA | 58.413 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
81 | 84 | 6.508777 | ACAAAGCCTAAATAAACGCTTTCAA | 58.491 | 32.000 | 3.05 | 0.00 | 45.86 | 2.69 |
82 | 85 | 6.079424 | ACAAAGCCTAAATAAACGCTTTCA | 57.921 | 33.333 | 3.05 | 0.00 | 45.86 | 2.69 |
88 | 91 | 7.959109 | GGTGTTACTACAAAGCCTAAATAAACG | 59.041 | 37.037 | 0.00 | 0.00 | 35.69 | 3.60 |
93 | 96 | 6.773685 | TGTTGGTGTTACTACAAAGCCTAAAT | 59.226 | 34.615 | 0.00 | 0.00 | 35.69 | 1.40 |
133 | 441 | 3.211045 | GACTTCAAGGCCACTTACACAA | 58.789 | 45.455 | 5.01 | 0.00 | 34.49 | 3.33 |
191 | 499 | 7.608153 | TCTTCGTTGAATCATTAGGAGTTACA | 58.392 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
206 | 514 | 6.147821 | TGGTTTTTGCATTTTTCTTCGTTGAA | 59.852 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
211 | 519 | 5.500825 | CCTTGGTTTTTGCATTTTTCTTCG | 58.499 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
212 | 520 | 5.273170 | GCCTTGGTTTTTGCATTTTTCTTC | 58.727 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
213 | 521 | 4.201901 | CGCCTTGGTTTTTGCATTTTTCTT | 60.202 | 37.500 | 0.00 | 0.00 | 0.00 | 2.52 |
215 | 523 | 3.311048 | TCGCCTTGGTTTTTGCATTTTTC | 59.689 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
221 | 531 | 1.107114 | TTCTCGCCTTGGTTTTTGCA | 58.893 | 45.000 | 0.00 | 0.00 | 0.00 | 4.08 |
222 | 532 | 2.217429 | TTTCTCGCCTTGGTTTTTGC | 57.783 | 45.000 | 0.00 | 0.00 | 0.00 | 3.68 |
229 | 539 | 2.161609 | ACGCTAAAATTTCTCGCCTTGG | 59.838 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
234 | 544 | 2.788065 | GCTCCACGCTAAAATTTCTCGC | 60.788 | 50.000 | 0.00 | 0.00 | 35.14 | 5.03 |
235 | 545 | 3.039670 | GCTCCACGCTAAAATTTCTCG | 57.960 | 47.619 | 0.00 | 0.00 | 35.14 | 4.04 |
249 | 559 | 3.601443 | AGTCACATGAGTTAGCTCCAC | 57.399 | 47.619 | 0.00 | 0.00 | 40.95 | 4.02 |
300 | 610 | 9.425248 | ACAAATTCAGTATCATGGGAATATTGT | 57.575 | 29.630 | 0.00 | 0.00 | 32.60 | 2.71 |
380 | 690 | 8.902540 | AGCCACAATACGAATCTATATTTTCA | 57.097 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
395 | 705 | 7.007995 | GCGAAAATTAGTTTGTAGCCACAATAC | 59.992 | 37.037 | 0.00 | 0.97 | 44.01 | 1.89 |
399 | 709 | 4.320641 | GGCGAAAATTAGTTTGTAGCCACA | 60.321 | 41.667 | 14.87 | 0.00 | 39.57 | 4.17 |
440 | 761 | 4.895961 | TGTATGGTGATTCGGTTTGTACA | 58.104 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
461 | 782 | 1.535860 | CCGTTCAGTTTGCAGGGTTTG | 60.536 | 52.381 | 0.00 | 0.00 | 0.00 | 2.93 |
462 | 783 | 0.744281 | CCGTTCAGTTTGCAGGGTTT | 59.256 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
562 | 883 | 3.808466 | TGAGAAATCGGATCCTGTCTG | 57.192 | 47.619 | 10.75 | 0.00 | 34.31 | 3.51 |
563 | 884 | 4.826274 | TTTGAGAAATCGGATCCTGTCT | 57.174 | 40.909 | 10.75 | 1.31 | 0.00 | 3.41 |
564 | 885 | 5.880054 | TTTTTGAGAAATCGGATCCTGTC | 57.120 | 39.130 | 10.75 | 0.00 | 0.00 | 3.51 |
939 | 1260 | 2.035632 | GACGGAGATTCTGGATCCTGT | 58.964 | 52.381 | 14.23 | 0.00 | 35.21 | 4.00 |
969 | 1290 | 1.898885 | GGGAGGGGAAAGAGTCGAC | 59.101 | 63.158 | 7.70 | 7.70 | 0.00 | 4.20 |
977 | 1298 | 2.285144 | GGGACTCGGGAGGGGAAA | 60.285 | 66.667 | 0.00 | 0.00 | 31.41 | 3.13 |
984 | 1305 | 2.363795 | ATTGCTCGGGACTCGGGA | 60.364 | 61.111 | 0.00 | 0.00 | 43.26 | 5.14 |
985 | 1306 | 2.202932 | CATTGCTCGGGACTCGGG | 60.203 | 66.667 | 0.00 | 0.00 | 43.49 | 5.14 |
986 | 1307 | 2.202932 | CCATTGCTCGGGACTCGG | 60.203 | 66.667 | 0.00 | 0.00 | 39.77 | 4.63 |
1059 | 1404 | 1.302511 | GGTGGTGGTGCTAGTGGTG | 60.303 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
1109 | 1460 | 1.716028 | GGTGGAGGTGGAGGTGGTTT | 61.716 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1114 | 1465 | 2.122954 | GGAGGTGGAGGTGGAGGT | 59.877 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
1115 | 1466 | 3.077556 | CGGAGGTGGAGGTGGAGG | 61.078 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1116 | 1467 | 3.775654 | GCGGAGGTGGAGGTGGAG | 61.776 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
1144 | 1495 | 1.950484 | GCTGGTGGTTGTGATGGTAGG | 60.950 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
1161 | 1512 | 1.318886 | TTGTTGTGGTGGTGGTGCTG | 61.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1162 | 1513 | 1.000270 | TTGTTGTGGTGGTGGTGCT | 60.000 | 52.632 | 0.00 | 0.00 | 0.00 | 4.40 |
1163 | 1514 | 1.140804 | GTTGTTGTGGTGGTGGTGC | 59.859 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
1479 | 1896 | 3.296709 | GAGGAAGAAGTCGCCGCCA | 62.297 | 63.158 | 0.00 | 0.00 | 0.00 | 5.69 |
1608 | 2052 | 3.310860 | GATGTCGACGGCCCAGGTT | 62.311 | 63.158 | 11.62 | 0.00 | 0.00 | 3.50 |
1665 | 2122 | 0.453390 | CAAGGAAGGAGAAATGGCGC | 59.547 | 55.000 | 0.00 | 0.00 | 0.00 | 6.53 |
1979 | 2458 | 2.112297 | TGTCCCCGGCACTGAAAC | 59.888 | 61.111 | 0.00 | 0.00 | 0.00 | 2.78 |
2289 | 2774 | 0.108992 | CGTCGAATTTCCCCGAGACA | 60.109 | 55.000 | 0.00 | 0.00 | 35.31 | 3.41 |
2367 | 2861 | 7.737972 | TCAGTTAAAACCTTCGATTTCATGA | 57.262 | 32.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2374 | 2871 | 5.179555 | GCAGACTTCAGTTAAAACCTTCGAT | 59.820 | 40.000 | 0.00 | 0.00 | 0.00 | 3.59 |
2376 | 2873 | 4.272504 | TGCAGACTTCAGTTAAAACCTTCG | 59.727 | 41.667 | 0.00 | 0.00 | 0.00 | 3.79 |
2384 | 2881 | 3.475566 | ACAGCTGCAGACTTCAGTTAA | 57.524 | 42.857 | 20.43 | 0.00 | 34.21 | 2.01 |
2386 | 2883 | 2.338577 | AACAGCTGCAGACTTCAGTT | 57.661 | 45.000 | 20.43 | 11.38 | 34.21 | 3.16 |
2425 | 2925 | 2.621070 | ACTCATACCCACACACTTCCT | 58.379 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
2483 | 3022 | 9.436957 | TCTTCCAGTTTTAAAGCATCTAAGTAG | 57.563 | 33.333 | 4.79 | 0.00 | 0.00 | 2.57 |
2484 | 3023 | 9.959721 | ATCTTCCAGTTTTAAAGCATCTAAGTA | 57.040 | 29.630 | 4.79 | 0.00 | 0.00 | 2.24 |
2485 | 3024 | 8.870075 | ATCTTCCAGTTTTAAAGCATCTAAGT | 57.130 | 30.769 | 4.79 | 0.00 | 0.00 | 2.24 |
2486 | 3025 | 8.950210 | TGATCTTCCAGTTTTAAAGCATCTAAG | 58.050 | 33.333 | 4.79 | 3.29 | 0.00 | 2.18 |
2489 | 3028 | 7.951347 | ATGATCTTCCAGTTTTAAAGCATCT | 57.049 | 32.000 | 4.79 | 0.00 | 0.00 | 2.90 |
2490 | 3029 | 7.704047 | GGAATGATCTTCCAGTTTTAAAGCATC | 59.296 | 37.037 | 15.17 | 0.00 | 38.45 | 3.91 |
2492 | 3031 | 6.721208 | AGGAATGATCTTCCAGTTTTAAAGCA | 59.279 | 34.615 | 19.67 | 0.00 | 41.00 | 3.91 |
2493 | 3032 | 7.163001 | AGGAATGATCTTCCAGTTTTAAAGC | 57.837 | 36.000 | 19.67 | 0.00 | 41.00 | 3.51 |
2494 | 3033 | 9.415544 | CAAAGGAATGATCTTCCAGTTTTAAAG | 57.584 | 33.333 | 19.67 | 4.44 | 41.00 | 1.85 |
2497 | 3036 | 9.753674 | ATACAAAGGAATGATCTTCCAGTTTTA | 57.246 | 29.630 | 19.67 | 13.02 | 41.00 | 1.52 |
2525 | 3064 | 5.520376 | TGGGAATAGCCGTTACTACTTAC | 57.480 | 43.478 | 0.00 | 0.00 | 37.63 | 2.34 |
2534 | 3073 | 5.937111 | AGTGTTTATATGGGAATAGCCGTT | 58.063 | 37.500 | 0.00 | 0.00 | 37.63 | 4.44 |
2535 | 3074 | 5.562298 | AGTGTTTATATGGGAATAGCCGT | 57.438 | 39.130 | 0.00 | 0.00 | 37.63 | 5.68 |
2536 | 3075 | 7.383687 | TCTAAGTGTTTATATGGGAATAGCCG | 58.616 | 38.462 | 0.00 | 0.00 | 37.63 | 5.52 |
2539 | 3078 | 9.950496 | AGCATCTAAGTGTTTATATGGGAATAG | 57.050 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2656 | 3662 | 2.159379 | GGCCTAGTAGCAAATGCAACAC | 60.159 | 50.000 | 8.28 | 2.77 | 45.16 | 3.32 |
2670 | 3676 | 7.873195 | AGAAATAAATTAGTCAAGGGCCTAGT | 58.127 | 34.615 | 6.41 | 0.00 | 0.00 | 2.57 |
2699 | 3714 | 4.699637 | TGACCAACTCGAACACAAATACT | 58.300 | 39.130 | 0.00 | 0.00 | 0.00 | 2.12 |
2700 | 3715 | 5.607119 | ATGACCAACTCGAACACAAATAC | 57.393 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
2701 | 3716 | 6.627395 | AAATGACCAACTCGAACACAAATA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
2702 | 3717 | 5.514274 | AAATGACCAACTCGAACACAAAT | 57.486 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
2740 | 3755 | 4.888917 | ACTTTCCAGAACTAGCAGTCTTC | 58.111 | 43.478 | 0.00 | 0.00 | 0.00 | 2.87 |
2774 | 3789 | 6.371548 | TGTCCGAAAGTTCATTTATTCAGAGG | 59.628 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2872 | 3888 | 6.896088 | CGTGAAAGAAATGCAAAACAAGAAAG | 59.104 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
2884 | 3900 | 2.132740 | TTGTGCCGTGAAAGAAATGC | 57.867 | 45.000 | 0.00 | 0.00 | 0.00 | 3.56 |
2895 | 3911 | 5.837437 | TCAAACATTAAAAGATTGTGCCGT | 58.163 | 33.333 | 2.70 | 0.00 | 0.00 | 5.68 |
2897 | 3913 | 7.945033 | TTCTCAAACATTAAAAGATTGTGCC | 57.055 | 32.000 | 2.70 | 0.00 | 0.00 | 5.01 |
2935 | 3951 | 9.665719 | ATTTATTCAACAAAGAACAACAAAGGT | 57.334 | 25.926 | 0.00 | 0.00 | 0.00 | 3.50 |
2955 | 3971 | 9.668497 | AAGTTAAGACTTAGAAGCCGATTTATT | 57.332 | 29.630 | 0.00 | 0.00 | 44.13 | 1.40 |
2961 | 3996 | 4.771054 | AGGAAGTTAAGACTTAGAAGCCGA | 59.229 | 41.667 | 0.00 | 0.00 | 45.88 | 5.54 |
2998 | 4034 | 5.544176 | GGAATCATATGACTCAGGTAGGGAA | 59.456 | 44.000 | 15.53 | 0.00 | 0.00 | 3.97 |
3001 | 4037 | 5.046735 | CAGGGAATCATATGACTCAGGTAGG | 60.047 | 48.000 | 15.53 | 0.00 | 0.00 | 3.18 |
3003 | 4039 | 5.540337 | GTCAGGGAATCATATGACTCAGGTA | 59.460 | 44.000 | 15.53 | 0.00 | 39.15 | 3.08 |
3008 | 4044 | 3.322254 | ACGGTCAGGGAATCATATGACTC | 59.678 | 47.826 | 7.78 | 6.59 | 41.40 | 3.36 |
3010 | 4046 | 3.322254 | AGACGGTCAGGGAATCATATGAC | 59.678 | 47.826 | 7.78 | 0.00 | 41.03 | 3.06 |
3019 | 4055 | 0.898789 | GTGAGGAGACGGTCAGGGAA | 60.899 | 60.000 | 11.27 | 0.00 | 0.00 | 3.97 |
3020 | 4056 | 1.304217 | GTGAGGAGACGGTCAGGGA | 60.304 | 63.158 | 11.27 | 0.00 | 0.00 | 4.20 |
3029 | 4065 | 7.202016 | TGAACAACAAATATTGTGAGGAGAC | 57.798 | 36.000 | 0.00 | 0.00 | 44.59 | 3.36 |
3031 | 4067 | 8.084073 | ACAATGAACAACAAATATTGTGAGGAG | 58.916 | 33.333 | 0.00 | 0.00 | 44.59 | 3.69 |
3060 | 4096 | 3.214328 | GTTCACCCTTGACAACTGACAT | 58.786 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
3063 | 4099 | 3.576078 | ATGTTCACCCTTGACAACTGA | 57.424 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
3066 | 4102 | 5.508200 | TTTGTATGTTCACCCTTGACAAC | 57.492 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
3073 | 4109 | 4.151883 | AGCACATTTTGTATGTTCACCCT | 58.848 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
3081 | 4117 | 7.064966 | TCACATCTGTCTAGCACATTTTGTATG | 59.935 | 37.037 | 0.00 | 0.00 | 33.23 | 2.39 |
3085 | 4121 | 5.868043 | TCACATCTGTCTAGCACATTTTG | 57.132 | 39.130 | 0.00 | 0.00 | 33.23 | 2.44 |
3087 | 4123 | 6.286758 | CCTATCACATCTGTCTAGCACATTT | 58.713 | 40.000 | 0.00 | 0.00 | 33.23 | 2.32 |
3090 | 4126 | 3.068732 | GCCTATCACATCTGTCTAGCACA | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 4.57 |
3091 | 4127 | 3.068732 | TGCCTATCACATCTGTCTAGCAC | 59.931 | 47.826 | 0.00 | 0.00 | 0.00 | 4.40 |
3092 | 4128 | 3.299503 | TGCCTATCACATCTGTCTAGCA | 58.700 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
3093 | 4129 | 4.021632 | TCATGCCTATCACATCTGTCTAGC | 60.022 | 45.833 | 0.00 | 0.00 | 0.00 | 3.42 |
3094 | 4130 | 5.718724 | TCATGCCTATCACATCTGTCTAG | 57.281 | 43.478 | 0.00 | 0.00 | 0.00 | 2.43 |
3132 | 4169 | 3.728845 | TCTACAGCTTCACAAACCTCAC | 58.271 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
3151 | 4188 | 8.484214 | TGTATCTAAGGACTAGCATGATTTCT | 57.516 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
3158 | 4195 | 4.281182 | CCGGTTGTATCTAAGGACTAGCAT | 59.719 | 45.833 | 0.00 | 0.00 | 0.00 | 3.79 |
3161 | 4198 | 5.435820 | GTCCGGTTGTATCTAAGGACTAG | 57.564 | 47.826 | 0.00 | 0.00 | 43.34 | 2.57 |
3164 | 4201 | 4.641989 | TGTAGTCCGGTTGTATCTAAGGAC | 59.358 | 45.833 | 0.00 | 4.42 | 46.06 | 3.85 |
3172 | 4209 | 3.377253 | TCTCCTGTAGTCCGGTTGTAT | 57.623 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
3198 | 4235 | 8.915057 | ACAGTATAATGATGATCAAAAGGGAG | 57.085 | 34.615 | 7.27 | 0.00 | 0.00 | 4.30 |
3225 | 4262 | 0.183492 | AGGGAGCACTTGTGCTTTCA | 59.817 | 50.000 | 26.08 | 0.00 | 46.36 | 2.69 |
3226 | 4263 | 2.079925 | CTAGGGAGCACTTGTGCTTTC | 58.920 | 52.381 | 26.08 | 20.38 | 46.36 | 2.62 |
3233 | 4270 | 0.693049 | AACCACCTAGGGAGCACTTG | 59.307 | 55.000 | 14.81 | 0.00 | 43.89 | 3.16 |
3234 | 4271 | 1.446016 | AAACCACCTAGGGAGCACTT | 58.554 | 50.000 | 14.81 | 0.00 | 43.89 | 3.16 |
3235 | 4272 | 1.073923 | CAAAACCACCTAGGGAGCACT | 59.926 | 52.381 | 14.81 | 0.00 | 43.89 | 4.40 |
3236 | 4273 | 1.073284 | TCAAAACCACCTAGGGAGCAC | 59.927 | 52.381 | 14.81 | 0.00 | 43.89 | 4.40 |
3237 | 4274 | 1.440618 | TCAAAACCACCTAGGGAGCA | 58.559 | 50.000 | 14.81 | 0.00 | 43.89 | 4.26 |
3238 | 4275 | 2.808906 | ATCAAAACCACCTAGGGAGC | 57.191 | 50.000 | 14.81 | 0.00 | 43.89 | 4.70 |
3239 | 4276 | 6.423182 | TCAATTATCAAAACCACCTAGGGAG | 58.577 | 40.000 | 14.81 | 6.22 | 43.89 | 4.30 |
3240 | 4277 | 6.395780 | TCAATTATCAAAACCACCTAGGGA | 57.604 | 37.500 | 14.81 | 0.00 | 43.89 | 4.20 |
3241 | 4278 | 6.833416 | TCATCAATTATCAAAACCACCTAGGG | 59.167 | 38.462 | 14.81 | 1.73 | 43.89 | 3.53 |
3242 | 4279 | 7.339212 | TGTCATCAATTATCAAAACCACCTAGG | 59.661 | 37.037 | 7.41 | 7.41 | 45.67 | 3.02 |
3243 | 4280 | 8.279970 | TGTCATCAATTATCAAAACCACCTAG | 57.720 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
3244 | 4281 | 8.519526 | GTTGTCATCAATTATCAAAACCACCTA | 58.480 | 33.333 | 0.00 | 0.00 | 35.92 | 3.08 |
3245 | 4282 | 7.015098 | TGTTGTCATCAATTATCAAAACCACCT | 59.985 | 33.333 | 0.00 | 0.00 | 35.92 | 4.00 |
3246 | 4283 | 7.151308 | TGTTGTCATCAATTATCAAAACCACC | 58.849 | 34.615 | 0.00 | 0.00 | 35.92 | 4.61 |
3247 | 4284 | 8.761575 | ATGTTGTCATCAATTATCAAAACCAC | 57.238 | 30.769 | 0.00 | 0.00 | 35.92 | 4.16 |
3280 | 4317 | 9.282247 | CATGCTAGATTGAAATGTTAGTTCAAC | 57.718 | 33.333 | 6.59 | 2.71 | 45.19 | 3.18 |
3281 | 4318 | 9.013229 | ACATGCTAGATTGAAATGTTAGTTCAA | 57.987 | 29.630 | 6.86 | 6.86 | 46.12 | 2.69 |
3282 | 4319 | 8.565896 | ACATGCTAGATTGAAATGTTAGTTCA | 57.434 | 30.769 | 0.00 | 0.00 | 33.21 | 3.18 |
3283 | 4320 | 9.846248 | AAACATGCTAGATTGAAATGTTAGTTC | 57.154 | 29.630 | 0.00 | 0.00 | 39.80 | 3.01 |
3284 | 4321 | 9.846248 | GAAACATGCTAGATTGAAATGTTAGTT | 57.154 | 29.630 | 0.00 | 0.00 | 39.80 | 2.24 |
3285 | 4322 | 9.013229 | TGAAACATGCTAGATTGAAATGTTAGT | 57.987 | 29.630 | 0.00 | 0.00 | 39.80 | 2.24 |
3286 | 4323 | 9.499585 | CTGAAACATGCTAGATTGAAATGTTAG | 57.500 | 33.333 | 0.00 | 0.00 | 39.80 | 2.34 |
3287 | 4324 | 9.230122 | TCTGAAACATGCTAGATTGAAATGTTA | 57.770 | 29.630 | 0.00 | 0.00 | 39.80 | 2.41 |
3288 | 4325 | 8.114331 | TCTGAAACATGCTAGATTGAAATGTT | 57.886 | 30.769 | 0.00 | 0.00 | 41.85 | 2.71 |
3289 | 4326 | 7.692460 | TCTGAAACATGCTAGATTGAAATGT | 57.308 | 32.000 | 0.00 | 0.00 | 32.99 | 2.71 |
3292 | 4329 | 9.453572 | ACTTATCTGAAACATGCTAGATTGAAA | 57.546 | 29.630 | 0.00 | 0.00 | 32.54 | 2.69 |
3293 | 4330 | 9.453572 | AACTTATCTGAAACATGCTAGATTGAA | 57.546 | 29.630 | 0.00 | 0.00 | 32.54 | 2.69 |
3294 | 4331 | 9.102757 | GAACTTATCTGAAACATGCTAGATTGA | 57.897 | 33.333 | 0.00 | 0.00 | 32.54 | 2.57 |
3295 | 4332 | 8.886719 | TGAACTTATCTGAAACATGCTAGATTG | 58.113 | 33.333 | 0.00 | 0.00 | 32.54 | 2.67 |
3296 | 4333 | 9.453572 | TTGAACTTATCTGAAACATGCTAGATT | 57.546 | 29.630 | 0.00 | 0.00 | 32.54 | 2.40 |
3297 | 4334 | 8.887717 | GTTGAACTTATCTGAAACATGCTAGAT | 58.112 | 33.333 | 0.00 | 0.00 | 34.51 | 1.98 |
3298 | 4335 | 7.877612 | TGTTGAACTTATCTGAAACATGCTAGA | 59.122 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
3299 | 4336 | 8.032952 | TGTTGAACTTATCTGAAACATGCTAG | 57.967 | 34.615 | 0.00 | 0.00 | 0.00 | 3.42 |
3300 | 4337 | 7.977789 | TGTTGAACTTATCTGAAACATGCTA | 57.022 | 32.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3301 | 4338 | 6.882610 | TGTTGAACTTATCTGAAACATGCT | 57.117 | 33.333 | 0.00 | 0.00 | 0.00 | 3.79 |
3302 | 4339 | 7.062605 | CCATTGTTGAACTTATCTGAAACATGC | 59.937 | 37.037 | 0.00 | 0.00 | 0.00 | 4.06 |
3303 | 4340 | 8.298854 | TCCATTGTTGAACTTATCTGAAACATG | 58.701 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
3304 | 4341 | 8.408043 | TCCATTGTTGAACTTATCTGAAACAT | 57.592 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
3305 | 4342 | 7.502226 | ACTCCATTGTTGAACTTATCTGAAACA | 59.498 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
3306 | 4343 | 7.805071 | CACTCCATTGTTGAACTTATCTGAAAC | 59.195 | 37.037 | 0.00 | 0.00 | 0.00 | 2.78 |
3307 | 4344 | 7.040478 | CCACTCCATTGTTGAACTTATCTGAAA | 60.040 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
3308 | 4345 | 6.430925 | CCACTCCATTGTTGAACTTATCTGAA | 59.569 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3309 | 4346 | 5.939883 | CCACTCCATTGTTGAACTTATCTGA | 59.060 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
3310 | 4347 | 5.392380 | GCCACTCCATTGTTGAACTTATCTG | 60.392 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
3311 | 4348 | 4.702131 | GCCACTCCATTGTTGAACTTATCT | 59.298 | 41.667 | 0.00 | 0.00 | 0.00 | 1.98 |
3312 | 4349 | 4.458989 | TGCCACTCCATTGTTGAACTTATC | 59.541 | 41.667 | 0.00 | 0.00 | 0.00 | 1.75 |
3313 | 4350 | 4.406456 | TGCCACTCCATTGTTGAACTTAT | 58.594 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
3314 | 4351 | 3.826524 | TGCCACTCCATTGTTGAACTTA | 58.173 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
3315 | 4352 | 2.665165 | TGCCACTCCATTGTTGAACTT | 58.335 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
3316 | 4353 | 2.363306 | TGCCACTCCATTGTTGAACT | 57.637 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3317 | 4354 | 2.353011 | CCATGCCACTCCATTGTTGAAC | 60.353 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3318 | 4355 | 1.894466 | CCATGCCACTCCATTGTTGAA | 59.106 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
3319 | 4356 | 1.075212 | TCCATGCCACTCCATTGTTGA | 59.925 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
3320 | 4357 | 1.203052 | GTCCATGCCACTCCATTGTTG | 59.797 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
3321 | 4358 | 1.076024 | AGTCCATGCCACTCCATTGTT | 59.924 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
3322 | 4359 | 0.700564 | AGTCCATGCCACTCCATTGT | 59.299 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3323 | 4360 | 2.715749 | TAGTCCATGCCACTCCATTG | 57.284 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3324 | 4361 | 3.624777 | CTTTAGTCCATGCCACTCCATT | 58.375 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3325 | 4362 | 2.092212 | CCTTTAGTCCATGCCACTCCAT | 60.092 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3326 | 4363 | 1.281867 | CCTTTAGTCCATGCCACTCCA | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
3327 | 4364 | 1.282157 | ACCTTTAGTCCATGCCACTCC | 59.718 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3328 | 4365 | 2.633488 | GACCTTTAGTCCATGCCACTC | 58.367 | 52.381 | 0.00 | 0.00 | 39.84 | 3.51 |
3329 | 4366 | 1.066143 | CGACCTTTAGTCCATGCCACT | 60.066 | 52.381 | 1.57 | 1.57 | 43.08 | 4.00 |
3330 | 4367 | 1.338769 | ACGACCTTTAGTCCATGCCAC | 60.339 | 52.381 | 0.00 | 0.00 | 43.08 | 5.01 |
3331 | 4368 | 0.981183 | ACGACCTTTAGTCCATGCCA | 59.019 | 50.000 | 0.00 | 0.00 | 43.08 | 4.92 |
3332 | 4369 | 1.369625 | CACGACCTTTAGTCCATGCC | 58.630 | 55.000 | 0.00 | 0.00 | 43.08 | 4.40 |
3333 | 4370 | 1.369625 | CCACGACCTTTAGTCCATGC | 58.630 | 55.000 | 0.00 | 0.00 | 43.08 | 4.06 |
3334 | 4371 | 1.553248 | TCCCACGACCTTTAGTCCATG | 59.447 | 52.381 | 0.00 | 0.00 | 43.08 | 3.66 |
3335 | 4372 | 1.946984 | TCCCACGACCTTTAGTCCAT | 58.053 | 50.000 | 0.00 | 0.00 | 43.08 | 3.41 |
3336 | 4373 | 1.345415 | GTTCCCACGACCTTTAGTCCA | 59.655 | 52.381 | 0.00 | 0.00 | 43.08 | 4.02 |
3337 | 4374 | 1.622312 | AGTTCCCACGACCTTTAGTCC | 59.378 | 52.381 | 0.00 | 0.00 | 43.08 | 3.85 |
3338 | 4375 | 2.353505 | GGAGTTCCCACGACCTTTAGTC | 60.354 | 54.545 | 0.00 | 0.00 | 37.20 | 2.59 |
3339 | 4376 | 1.622312 | GGAGTTCCCACGACCTTTAGT | 59.378 | 52.381 | 0.00 | 0.00 | 34.14 | 2.24 |
3340 | 4377 | 1.900486 | AGGAGTTCCCACGACCTTTAG | 59.100 | 52.381 | 0.00 | 0.00 | 37.41 | 1.85 |
3341 | 4378 | 2.019807 | AGGAGTTCCCACGACCTTTA | 57.980 | 50.000 | 0.00 | 0.00 | 37.41 | 1.85 |
3342 | 4379 | 1.071857 | GAAGGAGTTCCCACGACCTTT | 59.928 | 52.381 | 0.00 | 0.00 | 41.40 | 3.11 |
3343 | 4380 | 0.685660 | GAAGGAGTTCCCACGACCTT | 59.314 | 55.000 | 0.00 | 0.00 | 42.85 | 3.50 |
3344 | 4381 | 0.471211 | TGAAGGAGTTCCCACGACCT | 60.471 | 55.000 | 0.00 | 0.00 | 36.55 | 3.85 |
3345 | 4382 | 0.395312 | TTGAAGGAGTTCCCACGACC | 59.605 | 55.000 | 0.00 | 0.00 | 37.41 | 4.79 |
3346 | 4383 | 1.343465 | TCTTGAAGGAGTTCCCACGAC | 59.657 | 52.381 | 0.00 | 0.00 | 37.41 | 4.34 |
3347 | 4384 | 1.712056 | TCTTGAAGGAGTTCCCACGA | 58.288 | 50.000 | 0.00 | 0.00 | 37.41 | 4.35 |
3348 | 4385 | 2.350522 | CATCTTGAAGGAGTTCCCACG | 58.649 | 52.381 | 0.00 | 0.00 | 37.41 | 4.94 |
3349 | 4386 | 2.087646 | GCATCTTGAAGGAGTTCCCAC | 58.912 | 52.381 | 0.00 | 0.00 | 37.41 | 4.61 |
3350 | 4387 | 1.988107 | AGCATCTTGAAGGAGTTCCCA | 59.012 | 47.619 | 0.00 | 0.00 | 37.41 | 4.37 |
3351 | 4388 | 2.797177 | AGCATCTTGAAGGAGTTCCC | 57.203 | 50.000 | 0.00 | 0.00 | 36.42 | 3.97 |
3352 | 4389 | 4.080863 | TCCTTAGCATCTTGAAGGAGTTCC | 60.081 | 45.833 | 0.00 | 0.00 | 43.02 | 3.62 |
3353 | 4390 | 5.091261 | TCCTTAGCATCTTGAAGGAGTTC | 57.909 | 43.478 | 0.00 | 0.00 | 43.02 | 3.01 |
3357 | 4394 | 4.908601 | TTGTCCTTAGCATCTTGAAGGA | 57.091 | 40.909 | 0.00 | 0.00 | 45.13 | 3.36 |
3358 | 4395 | 4.397417 | CCTTTGTCCTTAGCATCTTGAAGG | 59.603 | 45.833 | 0.00 | 0.00 | 41.03 | 3.46 |
3359 | 4396 | 5.248640 | TCCTTTGTCCTTAGCATCTTGAAG | 58.751 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3360 | 4397 | 5.241403 | TCCTTTGTCCTTAGCATCTTGAA | 57.759 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
3361 | 4398 | 4.908601 | TCCTTTGTCCTTAGCATCTTGA | 57.091 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
3362 | 4399 | 5.163581 | CCAATCCTTTGTCCTTAGCATCTTG | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3363 | 4400 | 4.952335 | CCAATCCTTTGTCCTTAGCATCTT | 59.048 | 41.667 | 0.00 | 0.00 | 0.00 | 2.40 |
3364 | 4401 | 4.530875 | CCAATCCTTTGTCCTTAGCATCT | 58.469 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
3365 | 4402 | 3.067320 | GCCAATCCTTTGTCCTTAGCATC | 59.933 | 47.826 | 0.00 | 0.00 | 0.00 | 3.91 |
3366 | 4403 | 3.026694 | GCCAATCCTTTGTCCTTAGCAT | 58.973 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
3367 | 4404 | 2.041620 | AGCCAATCCTTTGTCCTTAGCA | 59.958 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
3368 | 4405 | 2.728007 | AGCCAATCCTTTGTCCTTAGC | 58.272 | 47.619 | 0.00 | 0.00 | 0.00 | 3.09 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.