Multiple sequence alignment - TraesCS1A01G381200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G381200 chr1A 100.000 3814 0 0 1 3814 551985188 551981375 0.000000e+00 7044.0
1 TraesCS1A01G381200 chr1D 90.769 2264 124 39 752 2968 460868809 460866584 0.000000e+00 2944.0
2 TraesCS1A01G381200 chr1D 95.921 858 26 5 2965 3814 460866504 460865648 0.000000e+00 1382.0
3 TraesCS1A01G381200 chr1D 93.059 389 26 1 328 715 405381654 405382042 5.530000e-158 568.0
4 TraesCS1A01G381200 chr1D 85.928 334 37 8 1 331 460869255 460868929 7.840000e-92 348.0
5 TraesCS1A01G381200 chr1D 92.683 41 3 0 713 753 460868937 460868897 4.110000e-05 60.2
6 TraesCS1A01G381200 chr1B 93.353 1384 69 13 2453 3814 633137881 633136499 0.000000e+00 2025.0
7 TraesCS1A01G381200 chr1B 90.043 1617 80 38 785 2352 633139474 633137890 0.000000e+00 2019.0
8 TraesCS1A01G381200 chr1B 87.500 64 6 1 100 163 633139733 633139672 5.290000e-09 73.1
9 TraesCS1A01G381200 chr7D 93.782 386 19 5 328 710 37427287 37427670 3.300000e-160 575.0
10 TraesCS1A01G381200 chr6A 93.834 373 23 0 328 700 534710249 534710621 2.570000e-156 562.0
11 TraesCS1A01G381200 chr6A 93.583 374 23 1 328 700 80863852 80864225 1.200000e-154 556.0
12 TraesCS1A01G381200 chr4D 93.834 373 23 0 328 700 39400246 39400618 2.570000e-156 562.0
13 TraesCS1A01G381200 chr4D 87.952 166 14 6 163 325 487362345 487362507 1.400000e-44 191.0
14 TraesCS1A01G381200 chr4A 93.834 373 23 0 328 700 648952350 648951978 2.570000e-156 562.0
15 TraesCS1A01G381200 chr5B 93.369 377 24 1 328 704 565196676 565196301 1.200000e-154 556.0
16 TraesCS1A01G381200 chr3B 93.566 373 24 0 328 700 77680532 77680160 1.200000e-154 556.0
17 TraesCS1A01G381200 chr3B 93.939 66 4 0 260 325 187335673 187335608 2.420000e-17 100.0
18 TraesCS1A01G381200 chr2B 92.761 373 27 0 328 700 450740667 450740295 1.210000e-149 540.0
19 TraesCS1A01G381200 chr2B 87.624 202 24 1 1882 2083 76099486 76099286 2.290000e-57 233.0
20 TraesCS1A01G381200 chr3D 85.185 162 18 5 166 324 599055978 599055820 1.100000e-35 161.0
21 TraesCS1A01G381200 chr3D 84.848 165 18 7 164 324 23124413 23124574 3.940000e-35 159.0
22 TraesCS1A01G381200 chr7A 84.146 164 21 4 164 324 670570777 670570616 1.830000e-33 154.0
23 TraesCS1A01G381200 chr7A 84.146 164 21 4 164 324 670599754 670599593 1.830000e-33 154.0
24 TraesCS1A01G381200 chr6B 81.771 192 14 13 1990 2177 152654932 152654758 1.430000e-29 141.0
25 TraesCS1A01G381200 chr2A 84.328 134 18 3 191 324 585693474 585693344 1.110000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G381200 chr1A 551981375 551985188 3813 True 7044.000000 7044 100.000000 1 3814 1 chr1A.!!$R1 3813
1 TraesCS1A01G381200 chr1D 460865648 460869255 3607 True 1183.550000 2944 91.325250 1 3814 4 chr1D.!!$R1 3813
2 TraesCS1A01G381200 chr1B 633136499 633139733 3234 True 1372.366667 2025 90.298667 100 3814 3 chr1B.!!$R1 3714

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 516 0.035317 TCATGAAGCAAGTGAGGCGT 59.965 50.0 0.00 0.0 36.08 5.68 F
517 520 0.110644 GAAGCAAGTGAGGCGTTTCG 60.111 55.0 0.00 0.0 36.08 3.46 F
560 563 0.176680 ATGAACCAAGCGAGCGATCT 59.823 50.0 0.00 0.0 0.00 2.75 F
849 1061 0.325272 AAGAGAAAAGGCCGAGGACC 59.675 55.0 0.00 0.0 0.00 4.46 F
2460 2743 0.392998 AATGGCCACTCATGTCCGTC 60.393 55.0 8.16 0.0 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1788 0.465097 CTAAGAGGCATGCCCACCAG 60.465 60.0 33.14 20.48 36.58 4.00 R
1531 1789 0.913934 TCTAAGAGGCATGCCCACCA 60.914 55.0 33.14 15.22 36.58 4.17 R
2373 2649 1.027357 CATGATTGTGGCCCTACTGC 58.973 55.0 0.00 0.00 0.00 4.40 R
2705 2990 0.326808 TAGGATGGGGGTGGGTACAC 60.327 60.0 0.00 0.00 46.97 2.90 R
3491 3878 0.549413 GGGAGGTTAGGGTTCTGGGT 60.549 60.0 0.00 0.00 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.567948 ACTTAAACAGTGAACCATTGATACAAG 58.432 33.333 0.00 0.00 32.83 3.16
37 38 5.376854 AACAGTGAACCATTGATACAAGC 57.623 39.130 0.00 0.00 0.00 4.01
40 41 3.441572 AGTGAACCATTGATACAAGCTGC 59.558 43.478 0.00 0.00 0.00 5.25
51 52 1.059913 ACAAGCTGCAGAGGTACCTT 58.940 50.000 20.43 7.07 0.00 3.50
56 57 2.840651 AGCTGCAGAGGTACCTTTGTAT 59.159 45.455 28.01 11.59 31.67 2.29
57 58 4.030913 AGCTGCAGAGGTACCTTTGTATA 58.969 43.478 28.01 16.44 31.67 1.47
58 59 4.100189 AGCTGCAGAGGTACCTTTGTATAG 59.900 45.833 28.01 23.31 31.67 1.31
59 60 4.740934 GCTGCAGAGGTACCTTTGTATAGG 60.741 50.000 28.01 16.10 41.31 2.57
61 62 4.404715 TGCAGAGGTACCTTTGTATAGGAC 59.595 45.833 28.01 13.62 38.73 3.85
62 63 4.404715 GCAGAGGTACCTTTGTATAGGACA 59.595 45.833 28.01 0.00 38.73 4.02
63 64 5.105064 GCAGAGGTACCTTTGTATAGGACAA 60.105 44.000 28.01 0.00 46.56 3.18
75 76 5.381757 TGTATAGGACAATTAATGTGGGGC 58.618 41.667 0.00 0.00 44.12 5.80
76 77 2.917713 AGGACAATTAATGTGGGGCA 57.082 45.000 0.00 0.00 44.12 5.36
90 91 2.772515 GTGGGGCAGAGGTAGTAGAAAT 59.227 50.000 0.00 0.00 0.00 2.17
93 94 4.291249 TGGGGCAGAGGTAGTAGAAATTTT 59.709 41.667 0.00 0.00 0.00 1.82
178 179 5.422650 ACAGACTTGAACCTAGGGATAGTTC 59.577 44.000 14.81 7.90 40.23 3.01
181 182 7.507616 CAGACTTGAACCTAGGGATAGTTCTAT 59.492 40.741 14.81 0.00 40.42 1.98
183 184 9.536510 GACTTGAACCTAGGGATAGTTCTATAT 57.463 37.037 14.81 0.00 40.42 0.86
210 213 8.887264 TTTTATTTTAGGGGTCTATCTGCAAA 57.113 30.769 0.00 0.00 0.00 3.68
218 221 4.156739 GGGGTCTATCTGCAAAGTTTTCAG 59.843 45.833 8.76 8.76 0.00 3.02
219 222 4.156739 GGGTCTATCTGCAAAGTTTTCAGG 59.843 45.833 14.13 0.56 0.00 3.86
221 224 5.649831 GGTCTATCTGCAAAGTTTTCAGGAT 59.350 40.000 14.13 9.39 0.00 3.24
223 226 7.500559 GGTCTATCTGCAAAGTTTTCAGGATAT 59.499 37.037 14.13 4.74 0.00 1.63
229 232 4.558860 GCAAAGTTTTCAGGATATTCGTGC 59.441 41.667 0.00 0.00 32.73 5.34
230 233 5.619981 GCAAAGTTTTCAGGATATTCGTGCT 60.620 40.000 0.00 0.00 32.73 4.40
242 245 5.106317 GGATATTCGTGCTTTTTCTGGTCAA 60.106 40.000 0.00 0.00 0.00 3.18
246 249 3.882888 TCGTGCTTTTTCTGGTCAATCTT 59.117 39.130 0.00 0.00 0.00 2.40
247 250 4.338118 TCGTGCTTTTTCTGGTCAATCTTT 59.662 37.500 0.00 0.00 0.00 2.52
251 254 6.144563 GTGCTTTTTCTGGTCAATCTTTTAGC 59.855 38.462 0.00 0.00 0.00 3.09
255 258 6.575162 TTTCTGGTCAATCTTTTAGCTTCC 57.425 37.500 0.00 0.00 0.00 3.46
256 259 5.241403 TCTGGTCAATCTTTTAGCTTCCA 57.759 39.130 0.00 0.00 0.00 3.53
257 260 5.819991 TCTGGTCAATCTTTTAGCTTCCAT 58.180 37.500 0.00 0.00 0.00 3.41
265 268 4.385825 TCTTTTAGCTTCCATCGTGTGTT 58.614 39.130 0.00 0.00 0.00 3.32
268 271 1.238439 AGCTTCCATCGTGTGTTTGG 58.762 50.000 0.00 0.00 0.00 3.28
276 279 3.309682 CCATCGTGTGTTTGGCTATGTAG 59.690 47.826 0.00 0.00 0.00 2.74
320 323 7.391148 AATGAATTACGTGGTTGCTCTAAAT 57.609 32.000 0.00 0.00 0.00 1.40
321 324 8.500753 AATGAATTACGTGGTTGCTCTAAATA 57.499 30.769 0.00 0.00 0.00 1.40
328 331 5.119125 ACGTGGTTGCTCTAAATAAACGTAC 59.881 40.000 0.00 0.00 39.67 3.67
329 332 5.346822 CGTGGTTGCTCTAAATAAACGTACT 59.653 40.000 0.00 0.00 0.00 2.73
330 333 6.128742 CGTGGTTGCTCTAAATAAACGTACTT 60.129 38.462 0.00 0.00 0.00 2.24
331 334 7.013529 GTGGTTGCTCTAAATAAACGTACTTG 58.986 38.462 0.00 0.00 0.00 3.16
332 335 6.930164 TGGTTGCTCTAAATAAACGTACTTGA 59.070 34.615 0.00 0.00 0.00 3.02
333 336 7.117236 TGGTTGCTCTAAATAAACGTACTTGAG 59.883 37.037 0.00 0.00 0.00 3.02
334 337 7.412672 GGTTGCTCTAAATAAACGTACTTGAGG 60.413 40.741 0.00 0.00 0.00 3.86
335 338 5.579511 TGCTCTAAATAAACGTACTTGAGGC 59.420 40.000 0.00 0.00 0.00 4.70
336 339 5.276254 GCTCTAAATAAACGTACTTGAGGCG 60.276 44.000 0.00 0.00 0.00 5.52
337 340 5.104374 TCTAAATAAACGTACTTGAGGCGG 58.896 41.667 0.00 0.00 0.00 6.13
338 341 3.598019 AATAAACGTACTTGAGGCGGA 57.402 42.857 0.00 0.00 0.00 5.54
339 342 3.598019 ATAAACGTACTTGAGGCGGAA 57.402 42.857 0.00 0.00 0.00 4.30
340 343 1.505425 AAACGTACTTGAGGCGGAAC 58.495 50.000 0.00 0.00 0.00 3.62
341 344 0.677842 AACGTACTTGAGGCGGAACT 59.322 50.000 0.00 0.00 0.00 3.01
342 345 1.538047 ACGTACTTGAGGCGGAACTA 58.462 50.000 0.00 0.00 0.00 2.24
343 346 1.888512 ACGTACTTGAGGCGGAACTAA 59.111 47.619 0.00 0.00 0.00 2.24
344 347 2.094854 ACGTACTTGAGGCGGAACTAAG 60.095 50.000 0.00 0.00 0.00 2.18
345 348 2.094854 CGTACTTGAGGCGGAACTAAGT 60.095 50.000 0.00 0.00 35.86 2.24
346 349 2.457366 ACTTGAGGCGGAACTAAGTG 57.543 50.000 0.00 0.00 31.00 3.16
347 350 1.079503 CTTGAGGCGGAACTAAGTGC 58.920 55.000 0.00 0.00 0.00 4.40
350 353 3.890674 GGCGGAACTAAGTGCCTG 58.109 61.111 0.00 0.00 44.16 4.85
351 354 1.003718 GGCGGAACTAAGTGCCTGT 60.004 57.895 0.00 0.00 44.16 4.00
352 355 0.248289 GGCGGAACTAAGTGCCTGTA 59.752 55.000 0.00 0.00 44.16 2.74
353 356 1.134491 GGCGGAACTAAGTGCCTGTAT 60.134 52.381 0.00 0.00 44.16 2.29
354 357 1.933853 GCGGAACTAAGTGCCTGTATG 59.066 52.381 0.00 0.00 0.00 2.39
355 358 2.550978 CGGAACTAAGTGCCTGTATGG 58.449 52.381 0.00 0.00 39.35 2.74
356 359 2.167693 CGGAACTAAGTGCCTGTATGGA 59.832 50.000 0.00 0.00 38.35 3.41
357 360 3.369052 CGGAACTAAGTGCCTGTATGGAA 60.369 47.826 0.00 0.00 38.35 3.53
358 361 4.192317 GGAACTAAGTGCCTGTATGGAAG 58.808 47.826 0.00 0.00 38.35 3.46
359 362 3.914426 ACTAAGTGCCTGTATGGAAGG 57.086 47.619 0.00 0.00 38.35 3.46
366 369 1.972872 CCTGTATGGAAGGCATGTCC 58.027 55.000 0.00 0.00 38.35 4.02
367 370 1.477558 CCTGTATGGAAGGCATGTCCC 60.478 57.143 0.00 0.00 38.35 4.46
368 371 1.492176 CTGTATGGAAGGCATGTCCCT 59.508 52.381 0.00 0.00 36.58 4.20
370 373 2.301346 GTATGGAAGGCATGTCCCTTG 58.699 52.381 9.13 0.00 45.03 3.61
371 374 3.608432 GGAAGGCATGTCCCTTGC 58.392 61.111 9.13 8.35 45.03 4.01
372 375 4.421365 GAAGGCATGTCCCTTGCA 57.579 55.556 9.13 0.00 45.03 4.08
373 376 1.885871 GAAGGCATGTCCCTTGCAC 59.114 57.895 9.13 0.00 45.03 4.57
374 377 0.610232 GAAGGCATGTCCCTTGCACT 60.610 55.000 9.13 0.00 45.03 4.40
375 378 0.896940 AAGGCATGTCCCTTGCACTG 60.897 55.000 4.01 0.00 43.43 3.66
376 379 2.345760 GGCATGTCCCTTGCACTGG 61.346 63.158 0.00 0.00 41.95 4.00
377 380 1.303561 GCATGTCCCTTGCACTGGA 60.304 57.895 6.51 2.95 39.90 3.86
378 381 1.310933 GCATGTCCCTTGCACTGGAG 61.311 60.000 3.62 0.00 39.90 3.86
379 382 0.037303 CATGTCCCTTGCACTGGAGT 59.963 55.000 3.62 0.00 0.00 3.85
381 384 1.302832 GTCCCTTGCACTGGAGTGG 60.303 63.158 8.82 0.00 45.72 4.00
382 385 1.461268 TCCCTTGCACTGGAGTGGA 60.461 57.895 8.82 2.76 45.72 4.02
383 386 1.002868 CCCTTGCACTGGAGTGGAG 60.003 63.158 8.82 0.93 46.71 3.86
384 387 1.757306 CCTTGCACTGGAGTGGAGT 59.243 57.895 8.82 0.00 46.71 3.85
385 388 0.321122 CCTTGCACTGGAGTGGAGTC 60.321 60.000 8.82 0.00 46.71 3.36
386 389 0.668706 CTTGCACTGGAGTGGAGTCG 60.669 60.000 8.82 0.00 46.71 4.18
387 390 2.099652 TTGCACTGGAGTGGAGTCGG 62.100 60.000 8.82 0.00 46.71 4.79
388 391 2.262915 CACTGGAGTGGAGTCGGC 59.737 66.667 0.00 0.00 42.10 5.54
389 392 2.203640 ACTGGAGTGGAGTCGGCA 60.204 61.111 0.00 0.00 0.00 5.69
390 393 2.279069 ACTGGAGTGGAGTCGGCAG 61.279 63.158 0.00 0.00 0.00 4.85
391 394 2.997315 TGGAGTGGAGTCGGCAGG 60.997 66.667 0.00 0.00 0.00 4.85
392 395 2.680352 GGAGTGGAGTCGGCAGGA 60.680 66.667 0.00 0.00 0.00 3.86
393 396 2.060980 GGAGTGGAGTCGGCAGGAT 61.061 63.158 0.00 0.00 0.00 3.24
394 397 1.142748 GAGTGGAGTCGGCAGGATG 59.857 63.158 0.00 0.00 40.87 3.51
407 410 2.730550 CAGGATGCCCTTGTTGAAAC 57.269 50.000 0.00 0.00 42.02 2.78
408 411 1.962807 CAGGATGCCCTTGTTGAAACA 59.037 47.619 0.00 0.00 42.02 2.83
409 412 2.364970 CAGGATGCCCTTGTTGAAACAA 59.635 45.455 8.26 8.26 45.88 2.83
422 425 6.232581 TGTTGAAACAAATTCCATGAAGGT 57.767 33.333 0.00 0.00 37.22 3.50
423 426 6.279882 TGTTGAAACAAATTCCATGAAGGTC 58.720 36.000 0.00 0.00 37.22 3.85
424 427 5.119931 TGAAACAAATTCCATGAAGGTCG 57.880 39.130 0.00 0.00 37.22 4.79
425 428 4.582656 TGAAACAAATTCCATGAAGGTCGT 59.417 37.500 0.00 0.00 37.22 4.34
426 429 5.068460 TGAAACAAATTCCATGAAGGTCGTT 59.932 36.000 0.00 0.00 37.22 3.85
427 430 6.263392 TGAAACAAATTCCATGAAGGTCGTTA 59.737 34.615 0.00 0.00 37.22 3.18
428 431 6.642707 AACAAATTCCATGAAGGTCGTTAA 57.357 33.333 0.00 0.00 39.02 2.01
429 432 6.254281 ACAAATTCCATGAAGGTCGTTAAG 57.746 37.500 0.00 0.00 39.02 1.85
430 433 6.001460 ACAAATTCCATGAAGGTCGTTAAGA 58.999 36.000 0.00 0.00 39.02 2.10
431 434 6.659242 ACAAATTCCATGAAGGTCGTTAAGAT 59.341 34.615 0.00 0.00 39.02 2.40
432 435 6.683974 AATTCCATGAAGGTCGTTAAGATG 57.316 37.500 0.00 0.00 39.02 2.90
433 436 5.414789 TTCCATGAAGGTCGTTAAGATGA 57.585 39.130 0.00 0.00 39.02 2.92
434 437 5.614324 TCCATGAAGGTCGTTAAGATGAT 57.386 39.130 0.00 0.00 39.02 2.45
435 438 5.989477 TCCATGAAGGTCGTTAAGATGATT 58.011 37.500 0.00 0.00 39.02 2.57
436 439 7.119709 TCCATGAAGGTCGTTAAGATGATTA 57.880 36.000 0.00 0.00 39.02 1.75
437 440 7.561251 TCCATGAAGGTCGTTAAGATGATTAA 58.439 34.615 0.00 0.00 39.02 1.40
438 441 8.210946 TCCATGAAGGTCGTTAAGATGATTAAT 58.789 33.333 0.00 0.00 39.02 1.40
439 442 9.489084 CCATGAAGGTCGTTAAGATGATTAATA 57.511 33.333 0.00 0.00 0.00 0.98
456 459 9.979578 ATGATTAATAATCCATCTCGAGATAGC 57.020 33.333 26.87 11.87 37.09 2.97
457 460 9.194972 TGATTAATAATCCATCTCGAGATAGCT 57.805 33.333 26.87 9.52 37.09 3.32
458 461 9.677567 GATTAATAATCCATCTCGAGATAGCTC 57.322 37.037 26.87 0.00 33.43 4.09
459 462 8.581253 TTAATAATCCATCTCGAGATAGCTCA 57.419 34.615 26.87 13.08 41.36 4.26
460 463 4.782019 AATCCATCTCGAGATAGCTCAC 57.218 45.455 26.87 0.00 41.36 3.51
461 464 3.214696 TCCATCTCGAGATAGCTCACA 57.785 47.619 26.87 1.36 41.36 3.58
462 465 3.145286 TCCATCTCGAGATAGCTCACAG 58.855 50.000 26.87 12.20 41.36 3.66
463 466 2.351641 CCATCTCGAGATAGCTCACAGC 60.352 54.545 26.87 0.00 41.36 4.40
472 475 4.215349 GCTCACAGCTGGGTCATC 57.785 61.111 17.28 0.00 38.45 2.92
473 476 1.601171 GCTCACAGCTGGGTCATCT 59.399 57.895 17.28 0.00 38.45 2.90
474 477 0.826715 GCTCACAGCTGGGTCATCTA 59.173 55.000 17.28 0.00 38.45 1.98
475 478 1.202510 GCTCACAGCTGGGTCATCTAG 60.203 57.143 17.28 5.74 38.45 2.43
476 479 2.106566 CTCACAGCTGGGTCATCTAGT 58.893 52.381 17.28 0.00 0.00 2.57
477 480 2.499289 CTCACAGCTGGGTCATCTAGTT 59.501 50.000 17.28 0.00 0.00 2.24
478 481 2.234661 TCACAGCTGGGTCATCTAGTTG 59.765 50.000 17.28 0.71 0.00 3.16
479 482 2.234661 CACAGCTGGGTCATCTAGTTGA 59.765 50.000 19.93 0.00 0.00 3.18
480 483 2.499289 ACAGCTGGGTCATCTAGTTGAG 59.501 50.000 19.93 0.00 0.00 3.02
481 484 1.484240 AGCTGGGTCATCTAGTTGAGC 59.516 52.381 20.06 20.06 42.11 4.26
482 485 1.208052 GCTGGGTCATCTAGTTGAGCA 59.792 52.381 26.20 15.46 44.08 4.26
483 486 2.898705 CTGGGTCATCTAGTTGAGCAC 58.101 52.381 26.20 18.43 44.08 4.40
484 487 1.204704 TGGGTCATCTAGTTGAGCACG 59.795 52.381 26.20 0.00 44.08 5.34
485 488 1.204941 GGGTCATCTAGTTGAGCACGT 59.795 52.381 26.20 0.00 44.08 4.49
486 489 2.263077 GGTCATCTAGTTGAGCACGTG 58.737 52.381 22.27 12.28 42.34 4.49
487 490 2.094700 GGTCATCTAGTTGAGCACGTGA 60.095 50.000 22.23 0.00 42.34 4.35
488 491 3.575630 GTCATCTAGTTGAGCACGTGAA 58.424 45.455 22.23 1.06 0.00 3.18
489 492 3.610242 GTCATCTAGTTGAGCACGTGAAG 59.390 47.826 22.23 4.19 0.00 3.02
490 493 2.065993 TCTAGTTGAGCACGTGAAGC 57.934 50.000 22.23 3.46 0.00 3.86
491 494 1.339929 TCTAGTTGAGCACGTGAAGCA 59.660 47.619 22.23 10.57 0.00 3.91
492 495 2.029020 TCTAGTTGAGCACGTGAAGCAT 60.029 45.455 22.23 2.14 0.00 3.79
493 496 1.151668 AGTTGAGCACGTGAAGCATC 58.848 50.000 22.23 11.94 0.00 3.91
494 497 1.151668 GTTGAGCACGTGAAGCATCT 58.848 50.000 22.23 5.10 0.00 2.90
495 498 1.127582 GTTGAGCACGTGAAGCATCTC 59.872 52.381 22.23 15.16 0.00 2.75
496 499 0.318120 TGAGCACGTGAAGCATCTCA 59.682 50.000 22.23 17.66 0.00 3.27
497 500 1.066645 TGAGCACGTGAAGCATCTCAT 60.067 47.619 22.23 0.00 0.00 2.90
498 501 1.326852 GAGCACGTGAAGCATCTCATG 59.673 52.381 22.23 0.00 38.16 3.07
499 502 1.066645 AGCACGTGAAGCATCTCATGA 60.067 47.619 22.23 0.00 36.11 3.07
500 503 1.733912 GCACGTGAAGCATCTCATGAA 59.266 47.619 22.23 0.00 36.11 2.57
501 504 2.222976 GCACGTGAAGCATCTCATGAAG 60.223 50.000 22.23 0.00 36.11 3.02
502 505 2.005451 ACGTGAAGCATCTCATGAAGC 58.995 47.619 0.00 1.40 36.11 3.86
503 506 2.004733 CGTGAAGCATCTCATGAAGCA 58.995 47.619 14.53 0.00 39.15 3.91
504 507 2.417586 CGTGAAGCATCTCATGAAGCAA 59.582 45.455 14.53 0.75 39.15 3.91
505 508 3.485381 CGTGAAGCATCTCATGAAGCAAG 60.485 47.826 14.53 0.00 39.15 4.01
506 509 3.439476 GTGAAGCATCTCATGAAGCAAGT 59.561 43.478 14.53 2.48 39.15 3.16
507 510 3.439129 TGAAGCATCTCATGAAGCAAGTG 59.561 43.478 14.53 2.10 39.15 3.16
508 511 3.345508 AGCATCTCATGAAGCAAGTGA 57.654 42.857 14.53 0.00 39.15 3.41
509 512 3.271729 AGCATCTCATGAAGCAAGTGAG 58.728 45.455 14.53 0.00 39.15 3.51
510 513 2.355132 GCATCTCATGAAGCAAGTGAGG 59.645 50.000 0.00 0.00 39.77 3.86
511 514 2.105006 TCTCATGAAGCAAGTGAGGC 57.895 50.000 0.00 0.00 39.77 4.70
512 515 0.725686 CTCATGAAGCAAGTGAGGCG 59.274 55.000 0.00 0.00 36.57 5.52
513 516 0.035317 TCATGAAGCAAGTGAGGCGT 59.965 50.000 0.00 0.00 36.08 5.68
514 517 0.877071 CATGAAGCAAGTGAGGCGTT 59.123 50.000 0.00 0.00 36.08 4.84
515 518 1.267806 CATGAAGCAAGTGAGGCGTTT 59.732 47.619 0.00 0.00 36.08 3.60
516 519 0.944386 TGAAGCAAGTGAGGCGTTTC 59.056 50.000 0.00 0.00 36.08 2.78
517 520 0.110644 GAAGCAAGTGAGGCGTTTCG 60.111 55.000 0.00 0.00 36.08 3.46
518 521 0.814010 AAGCAAGTGAGGCGTTTCGT 60.814 50.000 0.00 0.00 36.08 3.85
519 522 0.814010 AGCAAGTGAGGCGTTTCGTT 60.814 50.000 0.00 0.00 36.08 3.85
520 523 0.657368 GCAAGTGAGGCGTTTCGTTG 60.657 55.000 0.00 0.00 0.00 4.10
521 524 0.655733 CAAGTGAGGCGTTTCGTTGT 59.344 50.000 0.00 0.00 0.00 3.32
522 525 0.935196 AAGTGAGGCGTTTCGTTGTC 59.065 50.000 0.00 0.00 0.00 3.18
523 526 0.179094 AGTGAGGCGTTTCGTTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
524 527 0.653636 GTGAGGCGTTTCGTTGTCAA 59.346 50.000 0.00 0.00 0.00 3.18
525 528 0.653636 TGAGGCGTTTCGTTGTCAAC 59.346 50.000 5.58 5.58 0.00 3.18
526 529 0.653636 GAGGCGTTTCGTTGTCAACA 59.346 50.000 15.79 0.63 0.00 3.33
527 530 1.062880 GAGGCGTTTCGTTGTCAACAA 59.937 47.619 15.79 6.52 0.00 2.83
528 531 1.469308 AGGCGTTTCGTTGTCAACAAA 59.531 42.857 15.79 11.51 37.63 2.83
529 532 2.095161 AGGCGTTTCGTTGTCAACAAAA 60.095 40.909 15.79 7.11 37.63 2.44
530 533 2.855370 GGCGTTTCGTTGTCAACAAAAT 59.145 40.909 15.79 0.00 37.63 1.82
531 534 3.061469 GGCGTTTCGTTGTCAACAAAATC 60.061 43.478 15.79 6.25 37.63 2.17
532 535 3.789224 GCGTTTCGTTGTCAACAAAATCT 59.211 39.130 15.79 0.00 37.63 2.40
533 536 4.086277 GCGTTTCGTTGTCAACAAAATCTC 60.086 41.667 15.79 0.00 37.63 2.75
534 537 4.436523 CGTTTCGTTGTCAACAAAATCTCC 59.563 41.667 15.79 0.00 37.63 3.71
535 538 4.561735 TTCGTTGTCAACAAAATCTCCC 57.438 40.909 15.79 0.00 37.63 4.30
536 539 3.546724 TCGTTGTCAACAAAATCTCCCA 58.453 40.909 15.79 0.00 37.63 4.37
537 540 3.563808 TCGTTGTCAACAAAATCTCCCAG 59.436 43.478 15.79 0.00 37.63 4.45
538 541 3.304659 CGTTGTCAACAAAATCTCCCAGG 60.305 47.826 15.79 0.00 37.63 4.45
539 542 3.874383 TGTCAACAAAATCTCCCAGGA 57.126 42.857 0.00 0.00 0.00 3.86
540 543 4.177537 TGTCAACAAAATCTCCCAGGAA 57.822 40.909 0.00 0.00 0.00 3.36
541 544 4.541705 TGTCAACAAAATCTCCCAGGAAA 58.458 39.130 0.00 0.00 0.00 3.13
542 545 5.147032 TGTCAACAAAATCTCCCAGGAAAT 58.853 37.500 0.00 0.00 0.00 2.17
543 546 5.010922 TGTCAACAAAATCTCCCAGGAAATG 59.989 40.000 0.00 0.00 0.00 2.32
544 547 5.243730 GTCAACAAAATCTCCCAGGAAATGA 59.756 40.000 0.00 0.00 0.00 2.57
545 548 5.837979 TCAACAAAATCTCCCAGGAAATGAA 59.162 36.000 0.00 0.00 0.00 2.57
546 549 5.728637 ACAAAATCTCCCAGGAAATGAAC 57.271 39.130 0.00 0.00 0.00 3.18
547 550 4.528206 ACAAAATCTCCCAGGAAATGAACC 59.472 41.667 0.00 0.00 0.00 3.62
548 551 4.402616 AAATCTCCCAGGAAATGAACCA 57.597 40.909 0.00 0.00 0.00 3.67
549 552 4.402616 AATCTCCCAGGAAATGAACCAA 57.597 40.909 0.00 0.00 0.00 3.67
550 553 3.439857 TCTCCCAGGAAATGAACCAAG 57.560 47.619 0.00 0.00 0.00 3.61
551 554 1.821136 CTCCCAGGAAATGAACCAAGC 59.179 52.381 0.00 0.00 0.00 4.01
552 555 0.527565 CCCAGGAAATGAACCAAGCG 59.472 55.000 0.00 0.00 0.00 4.68
553 556 1.533625 CCAGGAAATGAACCAAGCGA 58.466 50.000 0.00 0.00 0.00 4.93
554 557 1.470098 CCAGGAAATGAACCAAGCGAG 59.530 52.381 0.00 0.00 0.00 5.03
555 558 1.135575 CAGGAAATGAACCAAGCGAGC 60.136 52.381 0.00 0.00 0.00 5.03
556 559 0.179189 GGAAATGAACCAAGCGAGCG 60.179 55.000 0.00 0.00 0.00 5.03
557 560 0.796312 GAAATGAACCAAGCGAGCGA 59.204 50.000 0.00 0.00 0.00 4.93
558 561 1.398390 GAAATGAACCAAGCGAGCGAT 59.602 47.619 0.00 0.00 0.00 4.58
559 562 1.009829 AATGAACCAAGCGAGCGATC 58.990 50.000 0.00 0.00 0.00 3.69
560 563 0.176680 ATGAACCAAGCGAGCGATCT 59.823 50.000 0.00 0.00 0.00 2.75
561 564 0.815095 TGAACCAAGCGAGCGATCTA 59.185 50.000 0.00 0.00 0.00 1.98
562 565 1.201343 GAACCAAGCGAGCGATCTAC 58.799 55.000 0.00 0.00 0.00 2.59
563 566 0.818296 AACCAAGCGAGCGATCTACT 59.182 50.000 0.00 0.00 0.00 2.57
564 567 0.818296 ACCAAGCGAGCGATCTACTT 59.182 50.000 0.00 0.00 0.00 2.24
565 568 1.203928 CCAAGCGAGCGATCTACTTG 58.796 55.000 20.15 20.15 36.81 3.16
566 569 0.574454 CAAGCGAGCGATCTACTTGC 59.426 55.000 16.80 14.15 43.68 4.01
572 575 2.656560 AGCGATCTACTTGCTCGTTT 57.343 45.000 0.00 0.00 40.94 3.60
573 576 2.960819 AGCGATCTACTTGCTCGTTTT 58.039 42.857 0.00 0.00 40.94 2.43
574 577 2.668457 AGCGATCTACTTGCTCGTTTTG 59.332 45.455 0.00 0.00 40.94 2.44
575 578 2.222819 GCGATCTACTTGCTCGTTTTGG 60.223 50.000 0.00 0.00 36.75 3.28
576 579 2.993899 CGATCTACTTGCTCGTTTTGGT 59.006 45.455 0.00 0.00 30.61 3.67
577 580 3.060895 CGATCTACTTGCTCGTTTTGGTC 59.939 47.826 0.00 0.00 30.61 4.02
578 581 2.400399 TCTACTTGCTCGTTTTGGTCG 58.600 47.619 0.00 0.00 0.00 4.79
579 582 2.132762 CTACTTGCTCGTTTTGGTCGT 58.867 47.619 0.00 0.00 0.00 4.34
580 583 0.935196 ACTTGCTCGTTTTGGTCGTC 59.065 50.000 0.00 0.00 0.00 4.20
581 584 1.217882 CTTGCTCGTTTTGGTCGTCT 58.782 50.000 0.00 0.00 0.00 4.18
582 585 2.223876 ACTTGCTCGTTTTGGTCGTCTA 60.224 45.455 0.00 0.00 0.00 2.59
583 586 2.060326 TGCTCGTTTTGGTCGTCTAG 57.940 50.000 0.00 0.00 0.00 2.43
584 587 1.610038 TGCTCGTTTTGGTCGTCTAGA 59.390 47.619 0.00 0.00 0.00 2.43
585 588 2.251893 GCTCGTTTTGGTCGTCTAGAG 58.748 52.381 0.00 0.00 0.00 2.43
586 589 2.864968 CTCGTTTTGGTCGTCTAGAGG 58.135 52.381 6.08 6.08 0.00 3.69
587 590 2.486982 CTCGTTTTGGTCGTCTAGAGGA 59.513 50.000 11.05 11.05 0.00 3.71
588 591 2.886523 TCGTTTTGGTCGTCTAGAGGAA 59.113 45.455 16.36 0.00 0.00 3.36
589 592 2.985139 CGTTTTGGTCGTCTAGAGGAAC 59.015 50.000 21.05 21.05 33.81 3.62
590 593 2.985139 GTTTTGGTCGTCTAGAGGAACG 59.015 50.000 21.99 10.19 35.81 3.95
591 594 2.189594 TTGGTCGTCTAGAGGAACGA 57.810 50.000 21.99 18.70 35.81 3.85
592 595 2.189594 TGGTCGTCTAGAGGAACGAA 57.810 50.000 21.99 6.26 35.81 3.85
593 596 1.808945 TGGTCGTCTAGAGGAACGAAC 59.191 52.381 21.99 16.88 41.99 3.95
594 597 1.202009 GGTCGTCTAGAGGAACGAACG 60.202 57.143 16.36 3.46 36.34 3.95
595 598 1.081892 TCGTCTAGAGGAACGAACGG 58.918 55.000 12.62 0.00 0.00 4.44
596 599 0.801251 CGTCTAGAGGAACGAACGGT 59.199 55.000 6.59 0.00 0.00 4.83
597 600 2.002586 CGTCTAGAGGAACGAACGGTA 58.997 52.381 6.59 0.00 0.00 4.02
598 601 2.030213 CGTCTAGAGGAACGAACGGTAG 59.970 54.545 6.59 0.00 0.00 3.18
599 602 3.006247 GTCTAGAGGAACGAACGGTAGT 58.994 50.000 0.00 0.00 0.00 2.73
600 603 3.438434 GTCTAGAGGAACGAACGGTAGTT 59.562 47.826 0.00 0.00 44.47 2.24
601 604 4.074970 TCTAGAGGAACGAACGGTAGTTT 58.925 43.478 0.00 0.00 41.34 2.66
602 605 3.022607 AGAGGAACGAACGGTAGTTTG 57.977 47.619 0.00 0.00 45.17 2.93
603 606 2.064014 GAGGAACGAACGGTAGTTTGG 58.936 52.381 0.00 0.00 44.21 3.28
604 607 1.413812 AGGAACGAACGGTAGTTTGGT 59.586 47.619 0.00 0.00 44.04 3.67
605 608 2.158914 AGGAACGAACGGTAGTTTGGTT 60.159 45.455 0.00 0.00 41.55 3.67
606 609 3.069443 AGGAACGAACGGTAGTTTGGTTA 59.931 43.478 0.00 0.00 41.55 2.85
607 610 3.429881 GGAACGAACGGTAGTTTGGTTAG 59.570 47.826 0.00 0.00 41.55 2.34
608 611 3.030668 ACGAACGGTAGTTTGGTTAGG 57.969 47.619 0.00 0.00 44.21 2.69
609 612 2.627699 ACGAACGGTAGTTTGGTTAGGA 59.372 45.455 0.00 0.00 44.21 2.94
610 613 3.259123 ACGAACGGTAGTTTGGTTAGGAT 59.741 43.478 0.00 0.00 44.21 3.24
611 614 3.861689 CGAACGGTAGTTTGGTTAGGATC 59.138 47.826 0.00 0.00 41.34 3.36
612 615 4.618927 CGAACGGTAGTTTGGTTAGGATCA 60.619 45.833 0.00 0.00 41.34 2.92
613 616 4.467198 ACGGTAGTTTGGTTAGGATCAG 57.533 45.455 0.00 0.00 0.00 2.90
614 617 3.836562 ACGGTAGTTTGGTTAGGATCAGT 59.163 43.478 0.00 0.00 0.00 3.41
615 618 4.181578 CGGTAGTTTGGTTAGGATCAGTG 58.818 47.826 0.00 0.00 0.00 3.66
616 619 3.939592 GGTAGTTTGGTTAGGATCAGTGC 59.060 47.826 0.00 0.00 0.00 4.40
617 620 3.073274 AGTTTGGTTAGGATCAGTGCC 57.927 47.619 0.00 0.00 0.00 5.01
618 621 2.644798 AGTTTGGTTAGGATCAGTGCCT 59.355 45.455 0.00 0.00 39.56 4.75
619 622 2.749621 GTTTGGTTAGGATCAGTGCCTG 59.250 50.000 0.00 0.00 36.96 4.85
620 623 1.951209 TGGTTAGGATCAGTGCCTGA 58.049 50.000 7.26 7.26 44.99 3.86
635 638 8.034313 TCAGTGCCTGATAAAATATTAGACCT 57.966 34.615 1.25 0.00 35.39 3.85
636 639 8.150945 TCAGTGCCTGATAAAATATTAGACCTC 58.849 37.037 1.25 0.00 35.39 3.85
637 640 7.933577 CAGTGCCTGATAAAATATTAGACCTCA 59.066 37.037 0.00 0.00 32.44 3.86
638 641 8.664079 AGTGCCTGATAAAATATTAGACCTCAT 58.336 33.333 0.00 0.00 0.00 2.90
639 642 8.940952 GTGCCTGATAAAATATTAGACCTCATC 58.059 37.037 0.00 0.00 0.00 2.92
640 643 8.103305 TGCCTGATAAAATATTAGACCTCATCC 58.897 37.037 0.00 0.00 0.00 3.51
641 644 8.325046 GCCTGATAAAATATTAGACCTCATCCT 58.675 37.037 0.00 0.00 0.00 3.24
647 650 8.707796 AAAATATTAGACCTCATCCTACGAGA 57.292 34.615 0.00 0.00 31.84 4.04
648 651 8.887264 AAATATTAGACCTCATCCTACGAGAT 57.113 34.615 0.00 0.00 31.84 2.75
649 652 8.887264 AATATTAGACCTCATCCTACGAGATT 57.113 34.615 0.00 0.00 31.84 2.40
650 653 6.582677 ATTAGACCTCATCCTACGAGATTG 57.417 41.667 0.00 0.00 31.84 2.67
651 654 3.904717 AGACCTCATCCTACGAGATTGT 58.095 45.455 0.00 0.00 31.84 2.71
652 655 5.050126 AGACCTCATCCTACGAGATTGTA 57.950 43.478 0.00 0.00 31.84 2.41
653 656 5.446860 AGACCTCATCCTACGAGATTGTAA 58.553 41.667 0.00 0.00 31.84 2.41
654 657 6.071984 AGACCTCATCCTACGAGATTGTAAT 58.928 40.000 0.00 0.00 31.84 1.89
655 658 6.015856 AGACCTCATCCTACGAGATTGTAATG 60.016 42.308 0.00 0.00 31.84 1.90
656 659 5.598830 ACCTCATCCTACGAGATTGTAATGT 59.401 40.000 0.00 0.00 31.84 2.71
657 660 5.923114 CCTCATCCTACGAGATTGTAATGTG 59.077 44.000 0.00 0.00 31.84 3.21
658 661 6.239036 CCTCATCCTACGAGATTGTAATGTGA 60.239 42.308 0.00 0.00 31.84 3.58
659 662 6.504398 TCATCCTACGAGATTGTAATGTGAC 58.496 40.000 0.00 0.00 0.00 3.67
660 663 6.321435 TCATCCTACGAGATTGTAATGTGACT 59.679 38.462 0.00 0.00 0.00 3.41
661 664 7.501225 TCATCCTACGAGATTGTAATGTGACTA 59.499 37.037 0.00 0.00 0.00 2.59
662 665 7.818997 TCCTACGAGATTGTAATGTGACTAT 57.181 36.000 0.00 0.00 0.00 2.12
663 666 8.234136 TCCTACGAGATTGTAATGTGACTATT 57.766 34.615 0.00 0.00 0.00 1.73
664 667 9.346005 TCCTACGAGATTGTAATGTGACTATTA 57.654 33.333 0.00 0.00 0.00 0.98
689 692 6.844097 TCAAACAATACAATCCCTTTACCC 57.156 37.500 0.00 0.00 0.00 3.69
690 693 5.717654 TCAAACAATACAATCCCTTTACCCC 59.282 40.000 0.00 0.00 0.00 4.95
691 694 3.893521 ACAATACAATCCCTTTACCCCG 58.106 45.455 0.00 0.00 0.00 5.73
692 695 2.621526 CAATACAATCCCTTTACCCCGC 59.378 50.000 0.00 0.00 0.00 6.13
693 696 1.287217 TACAATCCCTTTACCCCGCA 58.713 50.000 0.00 0.00 0.00 5.69
694 697 0.406361 ACAATCCCTTTACCCCGCAA 59.594 50.000 0.00 0.00 0.00 4.85
695 698 1.203075 ACAATCCCTTTACCCCGCAAA 60.203 47.619 0.00 0.00 0.00 3.68
696 699 1.896465 CAATCCCTTTACCCCGCAAAA 59.104 47.619 0.00 0.00 0.00 2.44
697 700 2.300437 CAATCCCTTTACCCCGCAAAAA 59.700 45.455 0.00 0.00 0.00 1.94
780 871 5.973565 CCAAGCAACTCTTCAAAACAAGTAG 59.026 40.000 0.00 0.00 31.27 2.57
782 873 7.201696 CCAAGCAACTCTTCAAAACAAGTAGTA 60.202 37.037 0.00 0.00 31.27 1.82
783 874 8.345565 CAAGCAACTCTTCAAAACAAGTAGTAT 58.654 33.333 0.00 0.00 31.27 2.12
849 1061 0.325272 AAGAGAAAAGGCCGAGGACC 59.675 55.000 0.00 0.00 0.00 4.46
862 1074 0.889186 GAGGACCAGCAGGCGAAAAA 60.889 55.000 0.00 0.00 39.06 1.94
863 1075 1.172812 AGGACCAGCAGGCGAAAAAC 61.173 55.000 0.00 0.00 39.06 2.43
1139 1372 1.375523 CTCTTCCCGTTGGGTTCGG 60.376 63.158 1.04 0.00 44.74 4.30
1145 1378 4.973055 CGTTGGGTTCGGCGGTGA 62.973 66.667 7.21 0.00 0.00 4.02
1263 1496 2.270205 CTGGCCGCTGGATGTTCT 59.730 61.111 0.00 0.00 0.00 3.01
1287 1520 2.829023 ACAAGTATTCGAGGGAAGGGA 58.171 47.619 0.00 0.00 35.19 4.20
1288 1521 2.500504 ACAAGTATTCGAGGGAAGGGAC 59.499 50.000 0.00 0.00 35.19 4.46
1289 1522 1.400737 AGTATTCGAGGGAAGGGACG 58.599 55.000 0.00 0.00 35.19 4.79
1290 1523 1.064166 AGTATTCGAGGGAAGGGACGA 60.064 52.381 0.00 0.00 35.19 4.20
1291 1524 1.337387 GTATTCGAGGGAAGGGACGAG 59.663 57.143 0.00 0.00 35.19 4.18
1292 1525 1.043673 ATTCGAGGGAAGGGACGAGG 61.044 60.000 0.00 0.00 35.19 4.63
1293 1526 3.148279 CGAGGGAAGGGACGAGGG 61.148 72.222 0.00 0.00 0.00 4.30
1294 1527 2.764547 GAGGGAAGGGACGAGGGG 60.765 72.222 0.00 0.00 0.00 4.79
1295 1528 3.281787 AGGGAAGGGACGAGGGGA 61.282 66.667 0.00 0.00 0.00 4.81
1296 1529 2.764547 GGGAAGGGACGAGGGGAG 60.765 72.222 0.00 0.00 0.00 4.30
1297 1530 2.039137 GGAAGGGACGAGGGGAGT 59.961 66.667 0.00 0.00 0.00 3.85
1298 1531 1.612739 GGAAGGGACGAGGGGAGTT 60.613 63.158 0.00 0.00 0.00 3.01
1350 1588 3.323243 ACGACGACTTTGGAATTAGTGG 58.677 45.455 0.00 0.00 0.00 4.00
1420 1658 2.075355 TTTGGTAGCTGGGTGGTGGG 62.075 60.000 0.00 0.00 0.00 4.61
1468 1706 1.208052 TCCTGCTAGGTTGAGATGCAC 59.792 52.381 0.00 0.00 36.53 4.57
1474 1712 2.770164 AGGTTGAGATGCACTGTACC 57.230 50.000 0.00 0.00 0.00 3.34
1475 1713 1.279271 AGGTTGAGATGCACTGTACCC 59.721 52.381 0.00 0.00 32.38 3.69
1500 1758 5.452636 GGAACAGCCTTAAAATTGGTGAACA 60.453 40.000 0.00 0.00 0.00 3.18
1501 1759 5.200368 ACAGCCTTAAAATTGGTGAACAG 57.800 39.130 0.00 0.00 0.00 3.16
1502 1760 3.989817 CAGCCTTAAAATTGGTGAACAGC 59.010 43.478 0.00 0.00 0.00 4.40
1503 1761 3.640967 AGCCTTAAAATTGGTGAACAGCA 59.359 39.130 2.51 2.51 36.99 4.41
1512 1770 3.708563 TGGTGAACAGCAAAGCTAAAC 57.291 42.857 4.20 0.00 36.40 2.01
1513 1771 3.287222 TGGTGAACAGCAAAGCTAAACT 58.713 40.909 4.20 0.00 36.40 2.66
1514 1772 3.066621 TGGTGAACAGCAAAGCTAAACTG 59.933 43.478 4.20 7.94 36.40 3.16
1515 1773 3.550842 GGTGAACAGCAAAGCTAAACTGG 60.551 47.826 12.73 0.00 36.40 4.00
1516 1774 3.066760 GTGAACAGCAAAGCTAAACTGGT 59.933 43.478 12.73 7.27 36.40 4.00
1517 1775 3.066621 TGAACAGCAAAGCTAAACTGGTG 59.933 43.478 12.73 12.79 42.74 4.17
1518 1776 2.930950 ACAGCAAAGCTAAACTGGTGA 58.069 42.857 18.45 0.00 40.21 4.02
1519 1777 3.287222 ACAGCAAAGCTAAACTGGTGAA 58.713 40.909 18.45 0.00 40.21 3.18
1520 1778 3.316308 ACAGCAAAGCTAAACTGGTGAAG 59.684 43.478 18.45 0.31 40.21 3.02
1521 1779 3.316308 CAGCAAAGCTAAACTGGTGAAGT 59.684 43.478 10.16 0.00 40.21 3.01
1522 1780 3.316308 AGCAAAGCTAAACTGGTGAAGTG 59.684 43.478 0.00 0.00 36.66 3.16
1523 1781 3.315191 GCAAAGCTAAACTGGTGAAGTGA 59.685 43.478 0.00 0.00 39.81 3.41
1524 1782 4.022849 GCAAAGCTAAACTGGTGAAGTGAT 60.023 41.667 0.00 0.00 39.81 3.06
1525 1783 5.507985 GCAAAGCTAAACTGGTGAAGTGATT 60.508 40.000 0.00 0.00 39.81 2.57
1526 1784 6.507023 CAAAGCTAAACTGGTGAAGTGATTT 58.493 36.000 0.00 0.00 39.81 2.17
1527 1785 5.695851 AGCTAAACTGGTGAAGTGATTTG 57.304 39.130 0.00 0.00 39.81 2.32
1528 1786 5.376625 AGCTAAACTGGTGAAGTGATTTGA 58.623 37.500 0.00 0.00 39.81 2.69
1529 1787 6.006449 AGCTAAACTGGTGAAGTGATTTGAT 58.994 36.000 0.00 0.00 39.81 2.57
1530 1788 6.150140 AGCTAAACTGGTGAAGTGATTTGATC 59.850 38.462 0.00 0.00 39.81 2.92
1531 1789 6.150140 GCTAAACTGGTGAAGTGATTTGATCT 59.850 38.462 0.00 0.00 39.81 2.75
1553 1811 0.475475 TGGGCATGCCTCTTAGATGG 59.525 55.000 34.70 0.00 36.10 3.51
1584 1848 7.453752 TCCACTAGGTGTATCTAGTTTTCAAGT 59.546 37.037 2.12 0.00 45.32 3.16
1610 1874 2.157738 AGAAGTGATGCTCTTGTTGGC 58.842 47.619 0.00 0.00 0.00 4.52
1616 1880 2.008329 GATGCTCTTGTTGGCTCTCTG 58.992 52.381 0.00 0.00 0.00 3.35
1644 1910 4.246458 GAGACTCGTATGGAAAGCTGTTT 58.754 43.478 0.00 0.00 0.00 2.83
1645 1911 5.047590 TGAGACTCGTATGGAAAGCTGTTTA 60.048 40.000 0.00 0.00 0.00 2.01
1654 1920 7.043325 CGTATGGAAAGCTGTTTATAGACAGTC 60.043 40.741 20.94 14.44 46.81 3.51
1719 1986 8.202137 GTGGTGGACATACATAATACTGTAGTT 58.798 37.037 0.00 0.00 35.21 2.24
1785 2053 4.100808 TCCAGTTTCCTGTTTCCATTTTGG 59.899 41.667 0.00 0.00 36.48 3.28
2062 2336 3.198872 GAGCAGGATTTTAGTCGAAGGG 58.801 50.000 0.00 0.00 0.00 3.95
2086 2360 1.897137 GGCCGGCCTTATGGTAAGC 60.897 63.158 38.76 6.70 35.27 3.09
2297 2573 4.453751 ACGGCTGTAAAAACCTGAAGTTA 58.546 39.130 0.00 0.00 37.88 2.24
2385 2661 2.938956 AGATAATGCAGTAGGGCCAC 57.061 50.000 6.18 1.63 0.00 5.01
2388 2664 3.139025 AGATAATGCAGTAGGGCCACAAT 59.861 43.478 6.18 0.00 0.00 2.71
2398 2674 5.771666 CAGTAGGGCCACAATCATGAATAAT 59.228 40.000 6.18 0.00 0.00 1.28
2403 2679 5.769662 GGGCCACAATCATGAATAATAGTGA 59.230 40.000 4.39 0.00 0.00 3.41
2458 2741 2.260844 ATAATGGCCACTCATGTCCG 57.739 50.000 8.16 0.00 0.00 4.79
2460 2743 0.392998 AATGGCCACTCATGTCCGTC 60.393 55.000 8.16 0.00 0.00 4.79
2496 2781 6.756074 TCAAAATGATCCAAACACAACTGTTC 59.244 34.615 0.00 0.00 39.88 3.18
2515 2800 6.435277 ACTGTTCATTCTACTCAATTGCCATT 59.565 34.615 0.00 0.00 0.00 3.16
2705 2990 4.320608 TCAAGCCCTTTTACTGCTTTTG 57.679 40.909 0.00 0.00 42.37 2.44
2734 3019 2.854337 ACCCCCATCCTATTTTAACCGT 59.146 45.455 0.00 0.00 0.00 4.83
2739 3024 4.820173 CCCATCCTATTTTAACCGTTCCTC 59.180 45.833 0.00 0.00 0.00 3.71
2775 3062 4.025040 TGCTTGAGTTCATCCTTGACAT 57.975 40.909 0.00 0.00 0.00 3.06
2776 3063 4.005650 TGCTTGAGTTCATCCTTGACATC 58.994 43.478 0.00 0.00 0.00 3.06
2792 3079 4.430007 TGACATCTACCAGATTTGCGTAC 58.570 43.478 0.00 0.00 31.32 3.67
2842 3136 2.493675 TGGAAGGAGAGTCTGATGAACG 59.506 50.000 0.00 0.00 0.00 3.95
2845 3139 1.895798 AGGAGAGTCTGATGAACGCAA 59.104 47.619 0.00 0.00 0.00 4.85
2850 3144 1.466167 AGTCTGATGAACGCAACATGC 59.534 47.619 0.00 0.00 40.69 4.06
2859 3153 0.109458 ACGCAACATGCTGCATCTTG 60.109 50.000 21.53 21.53 42.25 3.02
2945 3239 4.950050 ACAATGGAGTCTCATCGTTATCC 58.050 43.478 1.47 0.00 0.00 2.59
2946 3240 3.924918 ATGGAGTCTCATCGTTATCCG 57.075 47.619 1.47 0.00 38.13 4.18
3078 3462 5.751243 AATTCATTTACCCATGTCGTAGC 57.249 39.130 0.00 0.00 0.00 3.58
3081 3465 2.572191 TTTACCCATGTCGTAGCTCG 57.428 50.000 0.00 0.00 41.41 5.03
3093 3477 0.676184 GTAGCTCGCCTGATGATCCA 59.324 55.000 0.00 0.00 0.00 3.41
3215 3599 9.878599 CCTCATTTGTTGTATATAATTCGGTTC 57.121 33.333 0.00 0.00 0.00 3.62
3224 3608 8.138365 TGTATATAATTCGGTTCACTTGCTTC 57.862 34.615 0.00 0.00 0.00 3.86
3407 3794 2.807676 CTCATTGGGCTGGGTTTACTT 58.192 47.619 0.00 0.00 0.00 2.24
3408 3795 2.755103 CTCATTGGGCTGGGTTTACTTC 59.245 50.000 0.00 0.00 0.00 3.01
3435 3822 3.055094 GCCTAAGTCCAGATCCAAAGTCA 60.055 47.826 0.00 0.00 0.00 3.41
3491 3878 2.685017 AGCATCGCTCCCACTGGA 60.685 61.111 0.00 0.00 38.75 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.026631 TCAATGGTTCACTGTTTAAGTTGAG 57.973 36.000 0.00 0.00 36.83 3.02
36 37 2.762535 TACAAAGGTACCTCTGCAGC 57.237 50.000 16.64 0.00 0.00 5.25
37 38 4.649674 TCCTATACAAAGGTACCTCTGCAG 59.350 45.833 16.64 7.63 37.91 4.41
40 41 6.540438 TTGTCCTATACAAAGGTACCTCTG 57.460 41.667 16.64 15.20 45.11 3.35
56 57 3.525609 TCTGCCCCACATTAATTGTCCTA 59.474 43.478 0.00 0.00 36.00 2.94
57 58 2.311542 TCTGCCCCACATTAATTGTCCT 59.688 45.455 0.00 0.00 36.00 3.85
58 59 2.689983 CTCTGCCCCACATTAATTGTCC 59.310 50.000 0.00 0.00 36.00 4.02
59 60 2.689983 CCTCTGCCCCACATTAATTGTC 59.310 50.000 0.00 0.00 36.00 3.18
61 62 2.738743 ACCTCTGCCCCACATTAATTG 58.261 47.619 0.00 0.00 0.00 2.32
62 63 3.527665 ACTACCTCTGCCCCACATTAATT 59.472 43.478 0.00 0.00 0.00 1.40
63 64 3.123273 ACTACCTCTGCCCCACATTAAT 58.877 45.455 0.00 0.00 0.00 1.40
64 65 2.557869 ACTACCTCTGCCCCACATTAA 58.442 47.619 0.00 0.00 0.00 1.40
106 107 3.529319 AGGGGAGAAATCTGTTTGGCTAT 59.471 43.478 0.00 0.00 0.00 2.97
111 112 5.990120 AATTGAGGGGAGAAATCTGTTTG 57.010 39.130 0.00 0.00 0.00 2.93
152 153 2.537143 TCCCTAGGTTCAAGTCTGTCC 58.463 52.381 8.29 0.00 0.00 4.02
187 188 7.639378 ACTTTGCAGATAGACCCCTAAAATAA 58.361 34.615 0.00 0.00 0.00 1.40
188 189 7.208064 ACTTTGCAGATAGACCCCTAAAATA 57.792 36.000 0.00 0.00 0.00 1.40
189 190 6.079712 ACTTTGCAGATAGACCCCTAAAAT 57.920 37.500 0.00 0.00 0.00 1.82
199 202 9.113838 GAATATCCTGAAAACTTTGCAGATAGA 57.886 33.333 10.75 1.08 0.00 1.98
204 207 5.796935 CACGAATATCCTGAAAACTTTGCAG 59.203 40.000 2.70 2.70 0.00 4.41
210 213 6.575162 AAAAGCACGAATATCCTGAAAACT 57.425 33.333 0.00 0.00 0.00 2.66
218 221 4.394920 TGACCAGAAAAAGCACGAATATCC 59.605 41.667 0.00 0.00 0.00 2.59
219 222 5.545658 TGACCAGAAAAAGCACGAATATC 57.454 39.130 0.00 0.00 0.00 1.63
221 224 5.705441 AGATTGACCAGAAAAAGCACGAATA 59.295 36.000 0.00 0.00 0.00 1.75
223 226 3.882888 AGATTGACCAGAAAAAGCACGAA 59.117 39.130 0.00 0.00 0.00 3.85
229 232 7.596621 GGAAGCTAAAAGATTGACCAGAAAAAG 59.403 37.037 0.00 0.00 0.00 2.27
230 233 7.069331 TGGAAGCTAAAAGATTGACCAGAAAAA 59.931 33.333 0.00 0.00 0.00 1.94
242 245 4.579869 ACACACGATGGAAGCTAAAAGAT 58.420 39.130 0.00 0.00 0.00 2.40
246 249 3.252215 CCAAACACACGATGGAAGCTAAA 59.748 43.478 0.00 0.00 36.27 1.85
247 250 2.811431 CCAAACACACGATGGAAGCTAA 59.189 45.455 0.00 0.00 36.27 3.09
251 254 1.238439 AGCCAAACACACGATGGAAG 58.762 50.000 0.00 0.00 36.27 3.46
255 258 3.242413 GCTACATAGCCAAACACACGATG 60.242 47.826 0.00 0.00 43.39 3.84
256 259 2.936498 GCTACATAGCCAAACACACGAT 59.064 45.455 0.00 0.00 43.39 3.73
257 260 2.343101 GCTACATAGCCAAACACACGA 58.657 47.619 0.00 0.00 43.39 4.35
299 302 7.424452 CGTTTATTTAGAGCAACCACGTAATTC 59.576 37.037 0.00 0.00 0.00 2.17
305 308 4.657075 ACGTTTATTTAGAGCAACCACG 57.343 40.909 0.00 0.00 0.00 4.94
306 309 6.716898 AGTACGTTTATTTAGAGCAACCAC 57.283 37.500 0.00 0.00 0.00 4.16
320 323 2.297033 AGTTCCGCCTCAAGTACGTTTA 59.703 45.455 0.00 0.00 0.00 2.01
321 324 1.069668 AGTTCCGCCTCAAGTACGTTT 59.930 47.619 0.00 0.00 0.00 3.60
328 331 1.079503 GCACTTAGTTCCGCCTCAAG 58.920 55.000 0.00 0.00 0.00 3.02
329 332 0.321298 GGCACTTAGTTCCGCCTCAA 60.321 55.000 5.13 0.00 41.50 3.02
330 333 1.295423 GGCACTTAGTTCCGCCTCA 59.705 57.895 5.13 0.00 41.50 3.86
331 334 4.203618 GGCACTTAGTTCCGCCTC 57.796 61.111 5.13 0.00 41.50 4.70
333 336 0.248289 TACAGGCACTTAGTTCCGCC 59.752 55.000 4.27 4.27 45.23 6.13
334 337 1.933853 CATACAGGCACTTAGTTCCGC 59.066 52.381 0.00 0.00 34.60 5.54
335 338 2.167693 TCCATACAGGCACTTAGTTCCG 59.832 50.000 0.00 0.00 34.60 4.30
336 339 3.906720 TCCATACAGGCACTTAGTTCC 57.093 47.619 0.00 0.00 34.60 3.62
337 340 4.192317 CCTTCCATACAGGCACTTAGTTC 58.808 47.826 0.00 0.00 34.60 3.01
338 341 4.222124 CCTTCCATACAGGCACTTAGTT 57.778 45.455 0.00 0.00 34.60 2.24
339 342 3.914426 CCTTCCATACAGGCACTTAGT 57.086 47.619 0.00 0.00 34.60 2.24
347 350 1.477558 GGGACATGCCTTCCATACAGG 60.478 57.143 3.48 0.00 34.45 4.00
348 351 1.492176 AGGGACATGCCTTCCATACAG 59.508 52.381 3.48 0.00 34.45 2.74
349 352 1.595311 AGGGACATGCCTTCCATACA 58.405 50.000 3.48 0.00 34.45 2.29
350 353 2.301346 CAAGGGACATGCCTTCCATAC 58.699 52.381 1.00 0.00 34.45 2.39
351 354 2.734755 CAAGGGACATGCCTTCCATA 57.265 50.000 1.00 0.00 34.45 2.74
352 355 3.602104 CAAGGGACATGCCTTCCAT 57.398 52.632 1.00 0.00 34.45 3.41
360 363 0.037303 ACTCCAGTGCAAGGGACATG 59.963 55.000 3.54 0.00 0.00 3.21
361 364 0.037303 CACTCCAGTGCAAGGGACAT 59.963 55.000 3.54 0.00 39.39 3.06
362 365 1.451504 CACTCCAGTGCAAGGGACA 59.548 57.895 3.54 0.00 39.39 4.02
363 366 1.302832 CCACTCCAGTGCAAGGGAC 60.303 63.158 3.54 0.00 44.34 4.46
364 367 1.461268 TCCACTCCAGTGCAAGGGA 60.461 57.895 7.34 7.34 44.34 4.20
365 368 1.002868 CTCCACTCCAGTGCAAGGG 60.003 63.158 6.61 2.67 44.34 3.95
366 369 0.321122 GACTCCACTCCAGTGCAAGG 60.321 60.000 0.76 0.00 44.34 3.61
367 370 0.668706 CGACTCCACTCCAGTGCAAG 60.669 60.000 0.76 3.93 44.34 4.01
368 371 1.367471 CGACTCCACTCCAGTGCAA 59.633 57.895 0.76 0.00 44.34 4.08
369 372 2.574018 CCGACTCCACTCCAGTGCA 61.574 63.158 0.76 0.00 44.34 4.57
370 373 2.262915 CCGACTCCACTCCAGTGC 59.737 66.667 0.76 0.00 44.34 4.40
371 374 2.262915 GCCGACTCCACTCCAGTG 59.737 66.667 0.00 0.00 45.23 3.66
372 375 2.203640 TGCCGACTCCACTCCAGT 60.204 61.111 0.00 0.00 0.00 4.00
373 376 2.575993 CTGCCGACTCCACTCCAG 59.424 66.667 0.00 0.00 0.00 3.86
374 377 2.805313 ATCCTGCCGACTCCACTCCA 62.805 60.000 0.00 0.00 0.00 3.86
375 378 2.060980 ATCCTGCCGACTCCACTCC 61.061 63.158 0.00 0.00 0.00 3.85
376 379 1.142748 CATCCTGCCGACTCCACTC 59.857 63.158 0.00 0.00 0.00 3.51
377 380 3.023949 GCATCCTGCCGACTCCACT 62.024 63.158 0.00 0.00 37.42 4.00
378 381 2.512515 GCATCCTGCCGACTCCAC 60.513 66.667 0.00 0.00 37.42 4.02
387 390 0.968405 TTTCAACAAGGGCATCCTGC 59.032 50.000 0.00 0.00 44.07 4.85
388 391 1.962807 TGTTTCAACAAGGGCATCCTG 59.037 47.619 0.00 0.00 44.07 3.86
395 398 8.644092 CCTTCATGGAATTTGTTTCAACAAGGG 61.644 40.741 5.31 0.00 43.25 3.95
396 399 6.203338 CCTTCATGGAATTTGTTTCAACAAGG 59.797 38.462 5.31 0.00 43.25 3.61
397 400 6.762661 ACCTTCATGGAATTTGTTTCAACAAG 59.237 34.615 5.31 0.00 43.39 3.16
398 401 6.648192 ACCTTCATGGAATTTGTTTCAACAA 58.352 32.000 0.79 0.79 42.12 2.83
399 402 6.232581 ACCTTCATGGAATTTGTTTCAACA 57.767 33.333 0.00 0.00 39.71 3.33
400 403 5.402270 CGACCTTCATGGAATTTGTTTCAAC 59.598 40.000 0.00 0.00 39.71 3.18
401 404 5.068460 ACGACCTTCATGGAATTTGTTTCAA 59.932 36.000 0.00 0.00 39.71 2.69
402 405 4.582656 ACGACCTTCATGGAATTTGTTTCA 59.417 37.500 0.00 0.00 39.71 2.69
403 406 5.121221 ACGACCTTCATGGAATTTGTTTC 57.879 39.130 0.00 0.00 39.71 2.78
404 407 5.529581 AACGACCTTCATGGAATTTGTTT 57.470 34.783 0.00 0.00 39.71 2.83
405 408 6.488683 TCTTAACGACCTTCATGGAATTTGTT 59.511 34.615 0.00 0.00 39.71 2.83
406 409 6.001460 TCTTAACGACCTTCATGGAATTTGT 58.999 36.000 0.00 0.00 39.71 2.83
407 410 6.494893 TCTTAACGACCTTCATGGAATTTG 57.505 37.500 0.00 0.00 39.71 2.32
408 411 6.884295 TCATCTTAACGACCTTCATGGAATTT 59.116 34.615 0.00 0.00 39.71 1.82
409 412 6.414732 TCATCTTAACGACCTTCATGGAATT 58.585 36.000 0.00 0.00 39.71 2.17
410 413 5.989477 TCATCTTAACGACCTTCATGGAAT 58.011 37.500 0.00 0.00 39.71 3.01
411 414 5.414789 TCATCTTAACGACCTTCATGGAA 57.585 39.130 0.00 0.00 39.71 3.53
412 415 5.614324 ATCATCTTAACGACCTTCATGGA 57.386 39.130 0.00 0.00 39.71 3.41
413 416 7.786178 TTAATCATCTTAACGACCTTCATGG 57.214 36.000 0.00 0.00 42.93 3.66
430 433 9.979578 GCTATCTCGAGATGGATTATTAATCAT 57.020 33.333 34.91 10.56 36.53 2.45
431 434 9.194972 AGCTATCTCGAGATGGATTATTAATCA 57.805 33.333 34.91 12.98 36.53 2.57
432 435 9.677567 GAGCTATCTCGAGATGGATTATTAATC 57.322 37.037 34.91 16.07 35.34 1.75
433 436 9.194972 TGAGCTATCTCGAGATGGATTATTAAT 57.805 33.333 34.91 11.78 42.26 1.40
434 437 8.462811 GTGAGCTATCTCGAGATGGATTATTAA 58.537 37.037 34.91 14.30 42.26 1.40
435 438 7.611855 TGTGAGCTATCTCGAGATGGATTATTA 59.388 37.037 34.91 19.21 42.26 0.98
436 439 6.435591 TGTGAGCTATCTCGAGATGGATTATT 59.564 38.462 34.91 17.59 42.26 1.40
437 440 5.948758 TGTGAGCTATCTCGAGATGGATTAT 59.051 40.000 34.91 20.05 42.26 1.28
438 441 5.316987 TGTGAGCTATCTCGAGATGGATTA 58.683 41.667 34.91 25.80 42.26 1.75
439 442 4.148079 TGTGAGCTATCTCGAGATGGATT 58.852 43.478 34.91 23.90 42.26 3.01
440 443 3.758023 CTGTGAGCTATCTCGAGATGGAT 59.242 47.826 34.91 31.13 42.26 3.41
441 444 3.145286 CTGTGAGCTATCTCGAGATGGA 58.855 50.000 34.91 18.30 42.26 3.41
442 445 2.351641 GCTGTGAGCTATCTCGAGATGG 60.352 54.545 33.22 30.97 42.26 3.51
443 446 2.932498 GCTGTGAGCTATCTCGAGATG 58.068 52.381 33.22 23.72 42.26 2.90
455 458 0.826715 TAGATGACCCAGCTGTGAGC 59.173 55.000 13.81 0.00 42.84 4.26
456 459 2.106566 ACTAGATGACCCAGCTGTGAG 58.893 52.381 13.81 3.42 30.76 3.51
457 460 2.234661 CAACTAGATGACCCAGCTGTGA 59.765 50.000 13.81 0.00 30.76 3.58
458 461 2.234661 TCAACTAGATGACCCAGCTGTG 59.765 50.000 13.81 3.15 30.76 3.66
459 462 2.499289 CTCAACTAGATGACCCAGCTGT 59.501 50.000 13.81 0.00 30.76 4.40
460 463 2.741228 GCTCAACTAGATGACCCAGCTG 60.741 54.545 6.78 6.78 30.76 4.24
461 464 1.484240 GCTCAACTAGATGACCCAGCT 59.516 52.381 0.00 0.00 33.54 4.24
462 465 1.208052 TGCTCAACTAGATGACCCAGC 59.792 52.381 0.00 2.13 0.00 4.85
463 466 2.736719 CGTGCTCAACTAGATGACCCAG 60.737 54.545 0.00 0.00 0.00 4.45
464 467 1.204704 CGTGCTCAACTAGATGACCCA 59.795 52.381 0.00 0.00 0.00 4.51
465 468 1.204941 ACGTGCTCAACTAGATGACCC 59.795 52.381 0.00 0.00 0.00 4.46
466 469 2.094700 TCACGTGCTCAACTAGATGACC 60.095 50.000 11.67 0.00 0.00 4.02
467 470 3.217599 TCACGTGCTCAACTAGATGAC 57.782 47.619 11.67 0.00 0.00 3.06
468 471 3.838120 CTTCACGTGCTCAACTAGATGA 58.162 45.455 11.67 2.41 0.00 2.92
469 472 2.346847 GCTTCACGTGCTCAACTAGATG 59.653 50.000 11.67 0.00 0.00 2.90
470 473 2.029020 TGCTTCACGTGCTCAACTAGAT 60.029 45.455 11.67 0.00 0.00 1.98
471 474 1.339929 TGCTTCACGTGCTCAACTAGA 59.660 47.619 11.67 0.00 0.00 2.43
472 475 1.783284 TGCTTCACGTGCTCAACTAG 58.217 50.000 11.67 0.58 0.00 2.57
473 476 2.029020 AGATGCTTCACGTGCTCAACTA 60.029 45.455 11.67 0.00 0.00 2.24
474 477 1.151668 GATGCTTCACGTGCTCAACT 58.848 50.000 11.67 0.00 0.00 3.16
475 478 1.127582 GAGATGCTTCACGTGCTCAAC 59.872 52.381 11.67 7.13 0.00 3.18
476 479 1.270252 TGAGATGCTTCACGTGCTCAA 60.270 47.619 11.67 0.00 30.26 3.02
477 480 0.318120 TGAGATGCTTCACGTGCTCA 59.682 50.000 11.67 13.56 0.00 4.26
478 481 1.326852 CATGAGATGCTTCACGTGCTC 59.673 52.381 11.67 10.98 0.00 4.26
479 482 1.066645 TCATGAGATGCTTCACGTGCT 60.067 47.619 11.67 0.00 31.70 4.40
480 483 1.362768 TCATGAGATGCTTCACGTGC 58.637 50.000 11.67 0.00 31.70 5.34
481 484 2.222976 GCTTCATGAGATGCTTCACGTG 60.223 50.000 9.94 9.94 40.64 4.49
482 485 2.005451 GCTTCATGAGATGCTTCACGT 58.995 47.619 2.07 0.00 40.64 4.49
483 486 2.004733 TGCTTCATGAGATGCTTCACG 58.995 47.619 15.13 0.00 43.30 4.35
484 487 3.439476 ACTTGCTTCATGAGATGCTTCAC 59.561 43.478 15.13 0.00 43.30 3.18
485 488 3.439129 CACTTGCTTCATGAGATGCTTCA 59.561 43.478 15.13 0.00 43.30 3.02
486 489 3.688185 TCACTTGCTTCATGAGATGCTTC 59.312 43.478 15.13 0.00 43.30 3.86
487 490 3.682696 TCACTTGCTTCATGAGATGCTT 58.317 40.909 15.13 0.00 43.30 3.91
488 491 3.271729 CTCACTTGCTTCATGAGATGCT 58.728 45.455 15.13 0.00 42.07 3.79
489 492 2.355132 CCTCACTTGCTTCATGAGATGC 59.645 50.000 0.00 3.06 42.07 3.91
490 493 2.355132 GCCTCACTTGCTTCATGAGATG 59.645 50.000 0.00 0.00 42.07 2.90
491 494 2.641305 GCCTCACTTGCTTCATGAGAT 58.359 47.619 0.00 0.00 42.07 2.75
492 495 1.673923 CGCCTCACTTGCTTCATGAGA 60.674 52.381 0.00 0.00 42.07 3.27
493 496 0.725686 CGCCTCACTTGCTTCATGAG 59.274 55.000 0.00 0.00 39.70 2.90
494 497 0.035317 ACGCCTCACTTGCTTCATGA 59.965 50.000 0.00 0.00 0.00 3.07
495 498 0.877071 AACGCCTCACTTGCTTCATG 59.123 50.000 0.00 0.00 0.00 3.07
496 499 1.537202 GAAACGCCTCACTTGCTTCAT 59.463 47.619 0.00 0.00 0.00 2.57
497 500 0.944386 GAAACGCCTCACTTGCTTCA 59.056 50.000 0.00 0.00 0.00 3.02
498 501 0.110644 CGAAACGCCTCACTTGCTTC 60.111 55.000 0.00 0.00 0.00 3.86
499 502 0.814010 ACGAAACGCCTCACTTGCTT 60.814 50.000 0.00 0.00 0.00 3.91
500 503 0.814010 AACGAAACGCCTCACTTGCT 60.814 50.000 0.00 0.00 0.00 3.91
501 504 0.657368 CAACGAAACGCCTCACTTGC 60.657 55.000 0.00 0.00 0.00 4.01
502 505 0.655733 ACAACGAAACGCCTCACTTG 59.344 50.000 0.00 0.00 0.00 3.16
503 506 0.935196 GACAACGAAACGCCTCACTT 59.065 50.000 0.00 0.00 0.00 3.16
504 507 0.179094 TGACAACGAAACGCCTCACT 60.179 50.000 0.00 0.00 0.00 3.41
505 508 0.653636 TTGACAACGAAACGCCTCAC 59.346 50.000 0.00 0.00 0.00 3.51
506 509 0.653636 GTTGACAACGAAACGCCTCA 59.346 50.000 1.86 0.00 0.00 3.86
507 510 0.653636 TGTTGACAACGAAACGCCTC 59.346 50.000 13.46 0.00 0.00 4.70
508 511 1.088306 TTGTTGACAACGAAACGCCT 58.912 45.000 13.46 0.00 0.00 5.52
509 512 1.897641 TTTGTTGACAACGAAACGCC 58.102 45.000 17.02 0.00 35.28 5.68
510 513 3.789224 AGATTTTGTTGACAACGAAACGC 59.211 39.130 28.11 23.04 44.98 4.84
511 514 4.436523 GGAGATTTTGTTGACAACGAAACG 59.563 41.667 28.11 0.00 44.98 3.60
512 515 4.738252 GGGAGATTTTGTTGACAACGAAAC 59.262 41.667 28.11 21.96 44.98 2.78
513 516 4.399618 TGGGAGATTTTGTTGACAACGAAA 59.600 37.500 27.84 27.84 45.91 3.46
514 517 3.948473 TGGGAGATTTTGTTGACAACGAA 59.052 39.130 15.67 15.67 35.28 3.85
515 518 3.546724 TGGGAGATTTTGTTGACAACGA 58.453 40.909 13.46 9.00 35.28 3.85
516 519 3.304659 CCTGGGAGATTTTGTTGACAACG 60.305 47.826 13.46 0.00 35.28 4.10
517 520 3.888930 TCCTGGGAGATTTTGTTGACAAC 59.111 43.478 11.54 11.54 35.28 3.32
518 521 4.177537 TCCTGGGAGATTTTGTTGACAA 57.822 40.909 0.00 0.00 0.00 3.18
519 522 3.874383 TCCTGGGAGATTTTGTTGACA 57.126 42.857 0.00 0.00 0.00 3.58
520 523 5.243730 TCATTTCCTGGGAGATTTTGTTGAC 59.756 40.000 0.00 0.00 0.00 3.18
521 524 5.392995 TCATTTCCTGGGAGATTTTGTTGA 58.607 37.500 0.00 0.00 0.00 3.18
522 525 5.726980 TCATTTCCTGGGAGATTTTGTTG 57.273 39.130 0.00 0.00 0.00 3.33
523 526 5.012046 GGTTCATTTCCTGGGAGATTTTGTT 59.988 40.000 0.00 0.00 0.00 2.83
524 527 4.528206 GGTTCATTTCCTGGGAGATTTTGT 59.472 41.667 0.00 0.00 0.00 2.83
525 528 4.527816 TGGTTCATTTCCTGGGAGATTTTG 59.472 41.667 0.00 0.00 0.00 2.44
526 529 4.750941 TGGTTCATTTCCTGGGAGATTTT 58.249 39.130 0.00 0.00 0.00 1.82
527 530 4.402616 TGGTTCATTTCCTGGGAGATTT 57.597 40.909 0.00 0.00 0.00 2.17
528 531 4.347607 CTTGGTTCATTTCCTGGGAGATT 58.652 43.478 0.00 0.00 0.00 2.40
529 532 3.879321 GCTTGGTTCATTTCCTGGGAGAT 60.879 47.826 0.00 0.00 0.00 2.75
530 533 2.555227 GCTTGGTTCATTTCCTGGGAGA 60.555 50.000 0.00 0.00 0.00 3.71
531 534 1.821136 GCTTGGTTCATTTCCTGGGAG 59.179 52.381 0.00 0.00 0.00 4.30
532 535 1.886222 CGCTTGGTTCATTTCCTGGGA 60.886 52.381 0.00 0.00 0.00 4.37
533 536 0.527565 CGCTTGGTTCATTTCCTGGG 59.472 55.000 0.00 0.00 0.00 4.45
534 537 1.470098 CTCGCTTGGTTCATTTCCTGG 59.530 52.381 0.00 0.00 0.00 4.45
535 538 1.135575 GCTCGCTTGGTTCATTTCCTG 60.136 52.381 0.00 0.00 0.00 3.86
536 539 1.168714 GCTCGCTTGGTTCATTTCCT 58.831 50.000 0.00 0.00 0.00 3.36
537 540 0.179189 CGCTCGCTTGGTTCATTTCC 60.179 55.000 0.00 0.00 0.00 3.13
538 541 0.796312 TCGCTCGCTTGGTTCATTTC 59.204 50.000 0.00 0.00 0.00 2.17
539 542 1.398390 GATCGCTCGCTTGGTTCATTT 59.602 47.619 0.00 0.00 0.00 2.32
540 543 1.009829 GATCGCTCGCTTGGTTCATT 58.990 50.000 0.00 0.00 0.00 2.57
541 544 0.176680 AGATCGCTCGCTTGGTTCAT 59.823 50.000 0.00 0.00 0.00 2.57
542 545 0.815095 TAGATCGCTCGCTTGGTTCA 59.185 50.000 0.00 0.00 0.00 3.18
543 546 1.201343 GTAGATCGCTCGCTTGGTTC 58.799 55.000 0.00 0.00 0.00 3.62
544 547 0.818296 AGTAGATCGCTCGCTTGGTT 59.182 50.000 0.00 0.00 0.00 3.67
545 548 0.818296 AAGTAGATCGCTCGCTTGGT 59.182 50.000 0.00 0.00 0.00 3.67
546 549 1.203928 CAAGTAGATCGCTCGCTTGG 58.796 55.000 14.47 2.47 36.50 3.61
547 550 0.574454 GCAAGTAGATCGCTCGCTTG 59.426 55.000 16.61 16.61 39.77 4.01
548 551 0.457851 AGCAAGTAGATCGCTCGCTT 59.542 50.000 0.84 0.00 0.00 4.68
549 552 0.030101 GAGCAAGTAGATCGCTCGCT 59.970 55.000 5.65 5.65 42.42 4.93
550 553 2.501071 GAGCAAGTAGATCGCTCGC 58.499 57.895 4.15 0.29 42.42 5.03
556 559 3.060895 CGACCAAAACGAGCAAGTAGATC 59.939 47.826 0.00 0.00 0.00 2.75
557 560 2.993899 CGACCAAAACGAGCAAGTAGAT 59.006 45.455 0.00 0.00 0.00 1.98
558 561 2.223876 ACGACCAAAACGAGCAAGTAGA 60.224 45.455 0.00 0.00 34.70 2.59
559 562 2.132762 ACGACCAAAACGAGCAAGTAG 58.867 47.619 0.00 0.00 34.70 2.57
560 563 2.129607 GACGACCAAAACGAGCAAGTA 58.870 47.619 0.00 0.00 34.70 2.24
561 564 0.935196 GACGACCAAAACGAGCAAGT 59.065 50.000 0.00 0.00 34.70 3.16
562 565 1.217882 AGACGACCAAAACGAGCAAG 58.782 50.000 0.00 0.00 34.70 4.01
563 566 2.034939 TCTAGACGACCAAAACGAGCAA 59.965 45.455 0.00 0.00 34.70 3.91
564 567 1.610038 TCTAGACGACCAAAACGAGCA 59.390 47.619 0.00 0.00 34.70 4.26
565 568 2.251893 CTCTAGACGACCAAAACGAGC 58.748 52.381 0.00 0.00 34.70 5.03
566 569 2.486982 TCCTCTAGACGACCAAAACGAG 59.513 50.000 0.00 0.00 34.70 4.18
567 570 2.507484 TCCTCTAGACGACCAAAACGA 58.493 47.619 0.00 0.00 34.70 3.85
568 571 2.985139 GTTCCTCTAGACGACCAAAACG 59.015 50.000 0.00 0.00 0.00 3.60
569 572 2.985139 CGTTCCTCTAGACGACCAAAAC 59.015 50.000 0.00 0.00 41.53 2.43
570 573 2.886523 TCGTTCCTCTAGACGACCAAAA 59.113 45.455 0.63 0.00 42.67 2.44
571 574 2.507484 TCGTTCCTCTAGACGACCAAA 58.493 47.619 0.63 0.00 42.67 3.28
572 575 2.189594 TCGTTCCTCTAGACGACCAA 57.810 50.000 0.63 0.00 42.67 3.67
573 576 1.808945 GTTCGTTCCTCTAGACGACCA 59.191 52.381 4.07 0.00 46.61 4.02
574 577 1.202009 CGTTCGTTCCTCTAGACGACC 60.202 57.143 4.07 0.00 46.61 4.79
575 578 1.202009 CCGTTCGTTCCTCTAGACGAC 60.202 57.143 4.07 0.77 46.61 4.34
576 579 1.081892 CCGTTCGTTCCTCTAGACGA 58.918 55.000 0.63 0.63 45.46 4.20
577 580 0.801251 ACCGTTCGTTCCTCTAGACG 59.199 55.000 0.00 0.00 40.43 4.18
578 581 3.006247 ACTACCGTTCGTTCCTCTAGAC 58.994 50.000 0.00 0.00 0.00 2.59
579 582 3.340814 ACTACCGTTCGTTCCTCTAGA 57.659 47.619 0.00 0.00 0.00 2.43
580 583 4.164294 CAAACTACCGTTCGTTCCTCTAG 58.836 47.826 0.00 0.00 31.66 2.43
581 584 3.057315 CCAAACTACCGTTCGTTCCTCTA 60.057 47.826 0.00 0.00 31.66 2.43
582 585 2.288640 CCAAACTACCGTTCGTTCCTCT 60.289 50.000 0.00 0.00 31.66 3.69
583 586 2.064014 CCAAACTACCGTTCGTTCCTC 58.936 52.381 0.00 0.00 31.66 3.71
584 587 1.413812 ACCAAACTACCGTTCGTTCCT 59.586 47.619 0.00 0.00 31.66 3.36
585 588 1.869774 ACCAAACTACCGTTCGTTCC 58.130 50.000 0.00 0.00 31.66 3.62
586 589 3.429881 CCTAACCAAACTACCGTTCGTTC 59.570 47.826 0.00 0.00 31.72 3.95
587 590 3.069443 TCCTAACCAAACTACCGTTCGTT 59.931 43.478 0.00 0.00 33.07 3.85
588 591 2.627699 TCCTAACCAAACTACCGTTCGT 59.372 45.455 0.00 0.00 31.66 3.85
589 592 3.302365 TCCTAACCAAACTACCGTTCG 57.698 47.619 0.00 0.00 31.66 3.95
590 593 4.824289 TGATCCTAACCAAACTACCGTTC 58.176 43.478 0.00 0.00 31.66 3.95
591 594 4.285260 ACTGATCCTAACCAAACTACCGTT 59.715 41.667 0.00 0.00 34.03 4.44
592 595 3.836562 ACTGATCCTAACCAAACTACCGT 59.163 43.478 0.00 0.00 0.00 4.83
593 596 4.181578 CACTGATCCTAACCAAACTACCG 58.818 47.826 0.00 0.00 0.00 4.02
594 597 3.939592 GCACTGATCCTAACCAAACTACC 59.060 47.826 0.00 0.00 0.00 3.18
595 598 3.939592 GGCACTGATCCTAACCAAACTAC 59.060 47.826 0.00 0.00 0.00 2.73
596 599 3.844211 AGGCACTGATCCTAACCAAACTA 59.156 43.478 0.00 0.00 37.18 2.24
597 600 2.644798 AGGCACTGATCCTAACCAAACT 59.355 45.455 0.00 0.00 37.18 2.66
598 601 3.073274 AGGCACTGATCCTAACCAAAC 57.927 47.619 0.00 0.00 37.18 2.93
612 615 8.034313 TGAGGTCTAATATTTTATCAGGCACT 57.966 34.615 0.00 0.00 43.88 4.40
613 616 8.854614 ATGAGGTCTAATATTTTATCAGGCAC 57.145 34.615 0.00 0.00 0.00 5.01
614 617 8.103305 GGATGAGGTCTAATATTTTATCAGGCA 58.897 37.037 0.00 0.00 0.00 4.75
615 618 8.325046 AGGATGAGGTCTAATATTTTATCAGGC 58.675 37.037 0.00 0.00 0.00 4.85
621 624 9.803507 TCTCGTAGGATGAGGTCTAATATTTTA 57.196 33.333 0.00 0.00 32.20 1.52
622 625 8.707796 TCTCGTAGGATGAGGTCTAATATTTT 57.292 34.615 0.00 0.00 32.20 1.82
623 626 8.887264 ATCTCGTAGGATGAGGTCTAATATTT 57.113 34.615 0.00 0.00 32.20 1.40
624 627 8.744652 CAATCTCGTAGGATGAGGTCTAATATT 58.255 37.037 0.00 0.00 32.20 1.28
625 628 7.891183 ACAATCTCGTAGGATGAGGTCTAATAT 59.109 37.037 0.00 0.00 32.20 1.28
626 629 7.232188 ACAATCTCGTAGGATGAGGTCTAATA 58.768 38.462 0.00 0.00 32.20 0.98
627 630 6.071984 ACAATCTCGTAGGATGAGGTCTAAT 58.928 40.000 0.00 0.00 32.20 1.73
628 631 5.446860 ACAATCTCGTAGGATGAGGTCTAA 58.553 41.667 0.00 0.00 32.20 2.10
629 632 5.050126 ACAATCTCGTAGGATGAGGTCTA 57.950 43.478 0.00 0.00 32.20 2.59
630 633 3.904717 ACAATCTCGTAGGATGAGGTCT 58.095 45.455 0.00 0.00 32.20 3.85
631 634 5.769484 TTACAATCTCGTAGGATGAGGTC 57.231 43.478 0.00 0.00 32.20 3.85
632 635 5.598830 ACATTACAATCTCGTAGGATGAGGT 59.401 40.000 0.00 0.00 32.20 3.85
633 636 5.923114 CACATTACAATCTCGTAGGATGAGG 59.077 44.000 0.00 0.00 32.20 3.86
634 637 6.638873 GTCACATTACAATCTCGTAGGATGAG 59.361 42.308 0.00 0.00 32.57 2.90
635 638 6.321435 AGTCACATTACAATCTCGTAGGATGA 59.679 38.462 0.00 0.00 0.00 2.92
636 639 6.507900 AGTCACATTACAATCTCGTAGGATG 58.492 40.000 0.00 0.00 0.00 3.51
637 640 6.716934 AGTCACATTACAATCTCGTAGGAT 57.283 37.500 0.00 0.00 0.00 3.24
638 641 7.818997 ATAGTCACATTACAATCTCGTAGGA 57.181 36.000 0.00 0.00 0.00 2.94
663 666 8.973182 GGGTAAAGGGATTGTATTGTTTGAATA 58.027 33.333 0.00 0.00 0.00 1.75
664 667 7.093068 GGGGTAAAGGGATTGTATTGTTTGAAT 60.093 37.037 0.00 0.00 0.00 2.57
665 668 6.211785 GGGGTAAAGGGATTGTATTGTTTGAA 59.788 38.462 0.00 0.00 0.00 2.69
666 669 5.717654 GGGGTAAAGGGATTGTATTGTTTGA 59.282 40.000 0.00 0.00 0.00 2.69
667 670 5.393678 CGGGGTAAAGGGATTGTATTGTTTG 60.394 44.000 0.00 0.00 0.00 2.93
668 671 4.707934 CGGGGTAAAGGGATTGTATTGTTT 59.292 41.667 0.00 0.00 0.00 2.83
669 672 4.274978 CGGGGTAAAGGGATTGTATTGTT 58.725 43.478 0.00 0.00 0.00 2.83
670 673 3.893521 CGGGGTAAAGGGATTGTATTGT 58.106 45.455 0.00 0.00 0.00 2.71
671 674 2.621526 GCGGGGTAAAGGGATTGTATTG 59.378 50.000 0.00 0.00 0.00 1.90
672 675 2.242708 TGCGGGGTAAAGGGATTGTATT 59.757 45.455 0.00 0.00 0.00 1.89
673 676 1.847737 TGCGGGGTAAAGGGATTGTAT 59.152 47.619 0.00 0.00 0.00 2.29
674 677 1.287217 TGCGGGGTAAAGGGATTGTA 58.713 50.000 0.00 0.00 0.00 2.41
675 678 0.406361 TTGCGGGGTAAAGGGATTGT 59.594 50.000 0.00 0.00 0.00 2.71
676 679 1.551452 TTTGCGGGGTAAAGGGATTG 58.449 50.000 0.00 0.00 0.00 2.67
677 680 2.312424 TTTTGCGGGGTAAAGGGATT 57.688 45.000 0.00 0.00 0.00 3.01
678 681 2.312424 TTTTTGCGGGGTAAAGGGAT 57.688 45.000 0.00 0.00 0.00 3.85
679 682 3.844161 TTTTTGCGGGGTAAAGGGA 57.156 47.368 0.00 0.00 0.00 4.20
724 727 4.142182 TGAGCAAAAGGAGTTTGGACTTTG 60.142 41.667 1.38 0.00 45.79 2.77
756 847 4.747810 ACTTGTTTTGAAGAGTTGCTTGG 58.252 39.130 0.00 0.00 36.83 3.61
782 873 9.780186 CTTCTTTTTAGGGAAATCCTATCGTAT 57.220 33.333 0.00 0.00 46.76 3.06
783 874 8.765517 ACTTCTTTTTAGGGAAATCCTATCGTA 58.234 33.333 0.00 0.00 46.76 3.43
805 1011 4.205587 TCAGGAATCCTACCGTCTACTTC 58.794 47.826 0.00 0.00 29.64 3.01
849 1061 2.650778 GGGGTTTTTCGCCTGCTG 59.349 61.111 0.00 0.00 44.48 4.41
862 1074 1.160289 TGAGGGAGGTCTTAGGGGGT 61.160 60.000 0.00 0.00 0.00 4.95
863 1075 0.399233 CTGAGGGAGGTCTTAGGGGG 60.399 65.000 0.00 0.00 0.00 5.40
895 1110 2.203684 ACGGGGTTGGGTCGTAGT 60.204 61.111 0.00 0.00 35.23 2.73
896 1111 2.575461 GACGGGGTTGGGTCGTAG 59.425 66.667 0.00 0.00 37.25 3.51
897 1112 2.996734 GGACGGGGTTGGGTCGTA 60.997 66.667 0.00 0.00 37.25 3.43
916 1148 4.357947 GGACGGCTCGACTGCACA 62.358 66.667 1.50 0.00 34.04 4.57
1139 1372 1.066303 AGATCAGATCGAGTTCACCGC 59.934 52.381 4.67 0.00 0.00 5.68
1145 1378 3.631686 CAGAGTCCAGATCAGATCGAGTT 59.368 47.826 4.67 0.00 0.00 3.01
1263 1496 4.891756 CCCTTCCCTCGAATACTTGTACTA 59.108 45.833 0.00 0.00 0.00 1.82
1420 1658 9.591792 AATCTAAGCAAATCCTTTTAAATCAGC 57.408 29.630 0.00 0.00 0.00 4.26
1468 1706 0.899720 TAAGGCTGTTCCGGGTACAG 59.100 55.000 24.60 24.60 44.55 2.74
1474 1712 2.560981 ACCAATTTTAAGGCTGTTCCGG 59.439 45.455 0.00 0.00 40.77 5.14
1475 1713 3.254657 TCACCAATTTTAAGGCTGTTCCG 59.745 43.478 0.00 0.00 40.77 4.30
1500 1758 3.316308 CACTTCACCAGTTTAGCTTTGCT 59.684 43.478 0.00 0.00 36.68 3.91
1501 1759 3.315191 TCACTTCACCAGTTTAGCTTTGC 59.685 43.478 0.00 0.00 30.92 3.68
1502 1760 5.695851 ATCACTTCACCAGTTTAGCTTTG 57.304 39.130 0.00 0.00 30.92 2.77
1503 1761 6.321181 TCAAATCACTTCACCAGTTTAGCTTT 59.679 34.615 0.00 0.00 30.92 3.51
1504 1762 5.827797 TCAAATCACTTCACCAGTTTAGCTT 59.172 36.000 0.00 0.00 30.92 3.74
1505 1763 5.376625 TCAAATCACTTCACCAGTTTAGCT 58.623 37.500 0.00 0.00 30.92 3.32
1506 1764 5.689383 TCAAATCACTTCACCAGTTTAGC 57.311 39.130 0.00 0.00 30.92 3.09
1507 1765 7.361542 CCAGATCAAATCACTTCACCAGTTTAG 60.362 40.741 0.00 0.00 30.92 1.85
1508 1766 6.430925 CCAGATCAAATCACTTCACCAGTTTA 59.569 38.462 0.00 0.00 30.92 2.01
1509 1767 5.242393 CCAGATCAAATCACTTCACCAGTTT 59.758 40.000 0.00 0.00 30.92 2.66
1510 1768 4.763793 CCAGATCAAATCACTTCACCAGTT 59.236 41.667 0.00 0.00 30.92 3.16
1511 1769 4.202503 ACCAGATCAAATCACTTCACCAGT 60.203 41.667 0.00 0.00 35.35 4.00
1512 1770 4.155462 CACCAGATCAAATCACTTCACCAG 59.845 45.833 0.00 0.00 0.00 4.00
1513 1771 4.074259 CACCAGATCAAATCACTTCACCA 58.926 43.478 0.00 0.00 0.00 4.17
1514 1772 3.441572 CCACCAGATCAAATCACTTCACC 59.558 47.826 0.00 0.00 0.00 4.02
1515 1773 3.441572 CCCACCAGATCAAATCACTTCAC 59.558 47.826 0.00 0.00 0.00 3.18
1516 1774 3.689347 CCCACCAGATCAAATCACTTCA 58.311 45.455 0.00 0.00 0.00 3.02
1517 1775 2.424956 GCCCACCAGATCAAATCACTTC 59.575 50.000 0.00 0.00 0.00 3.01
1518 1776 2.225091 TGCCCACCAGATCAAATCACTT 60.225 45.455 0.00 0.00 0.00 3.16
1519 1777 1.355381 TGCCCACCAGATCAAATCACT 59.645 47.619 0.00 0.00 0.00 3.41
1520 1778 1.838112 TGCCCACCAGATCAAATCAC 58.162 50.000 0.00 0.00 0.00 3.06
1521 1779 2.380941 CATGCCCACCAGATCAAATCA 58.619 47.619 0.00 0.00 0.00 2.57
1522 1780 1.068127 GCATGCCCACCAGATCAAATC 59.932 52.381 6.36 0.00 0.00 2.17
1523 1781 1.117150 GCATGCCCACCAGATCAAAT 58.883 50.000 6.36 0.00 0.00 2.32
1524 1782 0.971959 GGCATGCCCACCAGATCAAA 60.972 55.000 27.24 0.00 0.00 2.69
1525 1783 1.380246 GGCATGCCCACCAGATCAA 60.380 57.895 27.24 0.00 0.00 2.57
1526 1784 2.274948 GAGGCATGCCCACCAGATCA 62.275 60.000 33.14 0.00 36.58 2.92
1527 1785 1.527844 GAGGCATGCCCACCAGATC 60.528 63.158 33.14 18.09 36.58 2.75
1528 1786 1.578215 AAGAGGCATGCCCACCAGAT 61.578 55.000 33.14 13.08 36.58 2.90
1529 1787 0.913934 TAAGAGGCATGCCCACCAGA 60.914 55.000 33.14 11.24 36.58 3.86
1530 1788 0.465097 CTAAGAGGCATGCCCACCAG 60.465 60.000 33.14 20.48 36.58 4.00
1531 1789 0.913934 TCTAAGAGGCATGCCCACCA 60.914 55.000 33.14 15.22 36.58 4.17
1584 1848 5.939764 ACAAGAGCATCACTTCTATACCA 57.060 39.130 0.00 0.00 37.82 3.25
1610 1874 1.539388 ACGAGTCTCAAGCACAGAGAG 59.461 52.381 0.00 0.00 42.38 3.20
1616 1880 2.941453 TCCATACGAGTCTCAAGCAC 57.059 50.000 0.00 0.00 0.00 4.40
1719 1986 3.076621 CAATCAGTGCTTGAAGCCTGTA 58.923 45.455 24.61 16.43 41.51 2.74
1785 2053 7.977853 TCCTTATAGTCGAAAAGGTGTTATCAC 59.022 37.037 13.66 0.00 40.58 3.06
2062 2336 1.515487 CATAAGGCCGGCCAAAACC 59.485 57.895 45.13 19.46 38.92 3.27
2225 2499 8.997323 CCAACTCAATATTCAATAGCTTCCTAG 58.003 37.037 0.00 0.00 0.00 3.02
2241 2515 6.385176 AGAACTCATCTGGATCCAACTCAATA 59.615 38.462 17.00 0.00 36.88 1.90
2245 2519 4.751767 AGAACTCATCTGGATCCAACTC 57.248 45.455 17.00 4.80 36.88 3.01
2297 2573 9.571816 GTACATACTTGTATAACTCCTAGTCCT 57.428 37.037 0.00 0.00 40.35 3.85
2355 2631 7.880195 CCCTACTGCATTATCTAAAGCTACAAT 59.120 37.037 0.00 0.00 31.74 2.71
2363 2639 4.165180 TGTGGCCCTACTGCATTATCTAAA 59.835 41.667 0.00 0.00 0.00 1.85
2373 2649 1.027357 CATGATTGTGGCCCTACTGC 58.973 55.000 0.00 0.00 0.00 4.40
2385 2661 9.740239 CCCAAGTTTCACTATTATTCATGATTG 57.260 33.333 0.00 0.00 0.00 2.67
2388 2664 7.775093 CCTCCCAAGTTTCACTATTATTCATGA 59.225 37.037 0.00 0.00 0.00 3.07
2398 2674 9.225682 AGATAATATTCCTCCCAAGTTTCACTA 57.774 33.333 0.00 0.00 0.00 2.74
2427 2703 8.435931 TGAGTGGCCATTATAACATAGATACT 57.564 34.615 9.72 0.00 0.00 2.12
2458 2741 7.919690 TGGATCATTTTGAAACATCTATCGAC 58.080 34.615 0.00 0.00 0.00 4.20
2460 2743 9.013490 GTTTGGATCATTTTGAAACATCTATCG 57.987 33.333 0.00 0.00 0.00 2.92
2471 2754 6.219417 ACAGTTGTGTTTGGATCATTTTGA 57.781 33.333 0.00 0.00 30.30 2.69
2496 2781 9.241317 GAATACAAATGGCAATTGAGTAGAATG 57.759 33.333 21.42 1.44 0.00 2.67
2565 2850 3.362831 CGCAAAGCAAAAGCTCATTGTAG 59.637 43.478 12.28 3.77 0.00 2.74
2602 2887 4.984161 AGGACTGCAAATGAAAAATTCACG 59.016 37.500 0.00 0.00 43.48 4.35
2675 2960 7.779798 AGCAGTAAAAGGGCTTGATATATTCAA 59.220 33.333 0.00 0.00 42.09 2.69
2705 2990 0.326808 TAGGATGGGGGTGGGTACAC 60.327 60.000 0.00 0.00 46.97 2.90
2734 3019 9.241919 TCAAGCAAAAATATATCAACAGAGGAA 57.758 29.630 0.00 0.00 0.00 3.36
2739 3024 9.844790 TGAACTCAAGCAAAAATATATCAACAG 57.155 29.630 0.00 0.00 0.00 3.16
2775 3062 5.616204 CGATATCGTACGCAAATCTGGTAGA 60.616 44.000 17.06 0.00 34.11 2.59
2776 3063 4.553815 CGATATCGTACGCAAATCTGGTAG 59.446 45.833 17.06 0.00 34.11 3.18
2792 3079 5.043903 ACTCAGAAAATGTGGACGATATCG 58.956 41.667 23.18 23.18 46.33 2.92
2807 3094 4.840680 TCTCCTTCCATCAGAACTCAGAAA 59.159 41.667 0.00 0.00 0.00 2.52
2842 3136 1.068125 TCACAAGATGCAGCATGTTGC 60.068 47.619 34.20 25.78 45.17 4.17
2859 3153 4.125703 CTGACATTAGCTCCTTCCATCAC 58.874 47.826 0.00 0.00 0.00 3.06
3048 3432 7.484641 CGACATGGGTAAATGAATTTAAGTGTG 59.515 37.037 0.00 0.00 34.36 3.82
3078 3462 2.358957 TGTTTTGGATCATCAGGCGAG 58.641 47.619 0.00 0.00 0.00 5.03
3081 3465 5.964758 TGTAATTGTTTTGGATCATCAGGC 58.035 37.500 0.00 0.00 0.00 4.85
3093 3477 9.426837 CAGGAAATGATGTGATGTAATTGTTTT 57.573 29.630 0.00 0.00 0.00 2.43
3205 3589 7.499321 TTTAAGAAGCAAGTGAACCGAATTA 57.501 32.000 0.00 0.00 0.00 1.40
3375 3762 3.117169 AGCCCAATGAGCCCATTATGTTA 60.117 43.478 0.00 0.00 40.81 2.41
3407 3794 2.050144 GATCTGGACTTAGGCCCATGA 58.950 52.381 0.00 0.00 0.00 3.07
3408 3795 1.072965 GGATCTGGACTTAGGCCCATG 59.927 57.143 0.00 0.00 0.00 3.66
3435 3822 1.901833 GGAAATGAAACCATGGCCTGT 59.098 47.619 13.04 0.00 0.00 4.00
3491 3878 0.549413 GGGAGGTTAGGGTTCTGGGT 60.549 60.000 0.00 0.00 0.00 4.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.