Multiple sequence alignment - TraesCS1A01G381100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G381100 chr1A 100.000 2591 0 0 1 2591 551982669 551980079 0.000000e+00 4785
1 TraesCS1A01G381100 chr1B 93.396 1802 87 18 1 1771 633137812 633136012 0.000000e+00 2639
2 TraesCS1A01G381100 chr1D 95.719 1308 45 7 446 1743 460866504 460865198 0.000000e+00 2095
3 TraesCS1A01G381100 chr1D 95.333 450 20 1 1 449 460867033 460866584 0.000000e+00 713
4 TraesCS1A01G381100 chr1D 84.740 557 48 20 1873 2420 460865160 460864632 8.210000e-145 523
5 TraesCS1A01G381100 chr2D 79.781 183 33 4 1360 1540 111336769 111336949 2.090000e-26 130
6 TraesCS1A01G381100 chr2B 79.235 183 34 4 1360 1540 161419823 161420003 9.740000e-25 124
7 TraesCS1A01G381100 chr2A 78.689 183 35 4 1360 1540 111426138 111426318 4.530000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G381100 chr1A 551980079 551982669 2590 True 4785.000000 4785 100.000000 1 2591 1 chr1A.!!$R1 2590
1 TraesCS1A01G381100 chr1B 633136012 633137812 1800 True 2639.000000 2639 93.396000 1 1771 1 chr1B.!!$R1 1770
2 TraesCS1A01G381100 chr1D 460864632 460867033 2401 True 1110.333333 2095 91.930667 1 2420 3 chr1D.!!$R1 2419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 350 0.109458 ACGCAACATGCTGCATCTTG 60.109 50.0 21.53 21.53 42.25 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2230 2349 0.10852 GCAGCAATCAACCATGGTGG 60.109 55.0 20.6 17.03 43.4 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
186 187 4.320608 TCAAGCCCTTTTACTGCTTTTG 57.679 40.909 0.00 0.00 42.37 2.44
215 216 2.854337 ACCCCCATCCTATTTTAACCGT 59.146 45.455 0.00 0.00 0.00 4.83
220 221 4.820173 CCCATCCTATTTTAACCGTTCCTC 59.180 45.833 0.00 0.00 0.00 3.71
256 259 4.025040 TGCTTGAGTTCATCCTTGACAT 57.975 40.909 0.00 0.00 0.00 3.06
257 260 4.005650 TGCTTGAGTTCATCCTTGACATC 58.994 43.478 0.00 0.00 0.00 3.06
273 276 4.430007 TGACATCTACCAGATTTGCGTAC 58.570 43.478 0.00 0.00 31.32 3.67
323 333 2.493675 TGGAAGGAGAGTCTGATGAACG 59.506 50.000 0.00 0.00 0.00 3.95
326 336 1.895798 AGGAGAGTCTGATGAACGCAA 59.104 47.619 0.00 0.00 0.00 4.85
331 341 1.466167 AGTCTGATGAACGCAACATGC 59.534 47.619 0.00 0.00 40.69 4.06
340 350 0.109458 ACGCAACATGCTGCATCTTG 60.109 50.000 21.53 21.53 42.25 3.02
426 436 4.950050 ACAATGGAGTCTCATCGTTATCC 58.050 43.478 1.47 0.00 0.00 2.59
427 437 3.924918 ATGGAGTCTCATCGTTATCCG 57.075 47.619 1.47 0.00 38.13 4.18
559 659 5.751243 AATTCATTTACCCATGTCGTAGC 57.249 39.130 0.00 0.00 0.00 3.58
562 662 2.572191 TTTACCCATGTCGTAGCTCG 57.428 50.000 0.00 0.00 41.41 5.03
574 674 0.676184 GTAGCTCGCCTGATGATCCA 59.324 55.000 0.00 0.00 0.00 3.41
696 796 9.878599 CCTCATTTGTTGTATATAATTCGGTTC 57.121 33.333 0.00 0.00 0.00 3.62
705 805 8.138365 TGTATATAATTCGGTTCACTTGCTTC 57.862 34.615 0.00 0.00 0.00 3.86
888 991 2.807676 CTCATTGGGCTGGGTTTACTT 58.192 47.619 0.00 0.00 0.00 2.24
889 992 2.755103 CTCATTGGGCTGGGTTTACTTC 59.245 50.000 0.00 0.00 0.00 3.01
916 1019 3.055094 GCCTAAGTCCAGATCCAAAGTCA 60.055 47.826 0.00 0.00 0.00 3.41
972 1075 2.685017 AGCATCGCTCCCACTGGA 60.685 61.111 0.00 0.00 38.75 3.86
1500 1603 2.612115 CTGGTGGAGAAGGCCCCT 60.612 66.667 0.00 0.00 0.00 4.79
1650 1753 3.541632 GCGGAATTGGGAACTCAGATTA 58.458 45.455 0.00 0.00 0.00 1.75
1660 1763 2.593346 ACTCAGATTAGCTTGAGCCG 57.407 50.000 12.14 0.00 43.38 5.52
1667 1770 0.322456 TTAGCTTGAGCCGGCACATT 60.322 50.000 31.54 18.62 43.38 2.71
1692 1795 5.673337 TGACTTGCTGTAGTGAAATTGTC 57.327 39.130 0.00 0.00 0.00 3.18
1710 1813 0.984230 TCGAGAAACTGATGGCCCTT 59.016 50.000 0.00 0.00 0.00 3.95
1713 1816 2.795329 GAGAAACTGATGGCCCTTTCA 58.205 47.619 0.00 0.00 0.00 2.69
1721 1824 4.202503 ACTGATGGCCCTTTCACCTATATG 60.203 45.833 0.00 0.00 0.00 1.78
1743 1848 3.689649 GGTTGTTGCTACCTAGGATGTTG 59.310 47.826 17.98 1.44 32.75 3.33
1746 1860 0.837272 TGCTACCTAGGATGTTGCCC 59.163 55.000 17.98 0.00 34.26 5.36
1771 1885 7.360017 CCATCACATTTCATTATGATGCAATGC 60.360 37.037 18.32 0.00 45.13 3.56
1772 1886 5.986741 TCACATTTCATTATGATGCAATGCC 59.013 36.000 18.32 0.00 45.13 4.40
1773 1887 5.989168 CACATTTCATTATGATGCAATGCCT 59.011 36.000 18.32 0.00 45.13 4.75
1774 1888 6.481976 CACATTTCATTATGATGCAATGCCTT 59.518 34.615 18.32 2.02 45.13 4.35
1775 1889 6.481976 ACATTTCATTATGATGCAATGCCTTG 59.518 34.615 18.32 0.00 45.13 3.61
1786 1900 3.705043 CAATGCCTTGCTGTCTAATCC 57.295 47.619 0.00 0.00 0.00 3.01
1787 1901 3.018856 CAATGCCTTGCTGTCTAATCCA 58.981 45.455 0.00 0.00 0.00 3.41
1788 1902 2.408271 TGCCTTGCTGTCTAATCCAG 57.592 50.000 0.00 0.00 0.00 3.86
1789 1903 1.630369 TGCCTTGCTGTCTAATCCAGT 59.370 47.619 0.00 0.00 32.41 4.00
1790 1904 2.837591 TGCCTTGCTGTCTAATCCAGTA 59.162 45.455 0.00 0.00 32.41 2.74
1791 1905 3.263170 TGCCTTGCTGTCTAATCCAGTAA 59.737 43.478 0.00 0.00 34.16 2.24
1792 1906 4.080356 TGCCTTGCTGTCTAATCCAGTAAT 60.080 41.667 0.00 0.00 34.68 1.89
1793 1907 4.274459 GCCTTGCTGTCTAATCCAGTAATG 59.726 45.833 0.00 0.00 34.68 1.90
1794 1908 5.431765 CCTTGCTGTCTAATCCAGTAATGT 58.568 41.667 0.00 0.00 34.68 2.71
1795 1909 6.582636 CCTTGCTGTCTAATCCAGTAATGTA 58.417 40.000 0.00 0.00 34.68 2.29
1796 1910 6.480320 CCTTGCTGTCTAATCCAGTAATGTAC 59.520 42.308 0.00 0.00 34.68 2.90
1797 1911 5.914033 TGCTGTCTAATCCAGTAATGTACC 58.086 41.667 0.00 0.00 32.41 3.34
1798 1912 5.163343 TGCTGTCTAATCCAGTAATGTACCC 60.163 44.000 0.00 0.00 32.41 3.69
1799 1913 5.163343 GCTGTCTAATCCAGTAATGTACCCA 60.163 44.000 0.00 0.00 32.41 4.51
1800 1914 6.229936 TGTCTAATCCAGTAATGTACCCAC 57.770 41.667 0.00 0.00 0.00 4.61
1801 1915 5.722441 TGTCTAATCCAGTAATGTACCCACA 59.278 40.000 0.00 0.00 39.52 4.17
1802 1916 6.213802 TGTCTAATCCAGTAATGTACCCACAA 59.786 38.462 0.00 0.00 38.42 3.33
1803 1917 7.092623 TGTCTAATCCAGTAATGTACCCACAAT 60.093 37.037 0.00 0.00 38.42 2.71
1804 1918 7.441458 GTCTAATCCAGTAATGTACCCACAATC 59.559 40.741 0.00 0.00 38.42 2.67
1805 1919 4.131649 TCCAGTAATGTACCCACAATCG 57.868 45.455 0.00 0.00 38.42 3.34
1806 1920 2.612212 CCAGTAATGTACCCACAATCGC 59.388 50.000 0.00 0.00 38.42 4.58
1807 1921 3.266636 CAGTAATGTACCCACAATCGCA 58.733 45.455 0.00 0.00 38.42 5.10
1808 1922 3.876914 CAGTAATGTACCCACAATCGCAT 59.123 43.478 0.00 0.00 38.42 4.73
1809 1923 4.335315 CAGTAATGTACCCACAATCGCATT 59.665 41.667 0.00 0.00 38.42 3.56
1810 1924 4.947388 AGTAATGTACCCACAATCGCATTT 59.053 37.500 0.00 0.00 38.42 2.32
1811 1925 4.370364 AATGTACCCACAATCGCATTTC 57.630 40.909 0.00 0.00 38.42 2.17
1812 1926 2.784347 TGTACCCACAATCGCATTTCA 58.216 42.857 0.00 0.00 0.00 2.69
1813 1927 3.351740 TGTACCCACAATCGCATTTCAT 58.648 40.909 0.00 0.00 0.00 2.57
1814 1928 3.761218 TGTACCCACAATCGCATTTCATT 59.239 39.130 0.00 0.00 0.00 2.57
1815 1929 4.944317 TGTACCCACAATCGCATTTCATTA 59.056 37.500 0.00 0.00 0.00 1.90
1816 1930 5.592282 TGTACCCACAATCGCATTTCATTAT 59.408 36.000 0.00 0.00 0.00 1.28
1817 1931 4.935702 ACCCACAATCGCATTTCATTATG 58.064 39.130 0.00 0.00 0.00 1.90
1818 1932 4.644234 ACCCACAATCGCATTTCATTATGA 59.356 37.500 0.00 0.00 0.00 2.15
1819 1933 5.302568 ACCCACAATCGCATTTCATTATGAT 59.697 36.000 0.00 0.00 0.00 2.45
1820 1934 5.631929 CCCACAATCGCATTTCATTATGATG 59.368 40.000 0.00 0.00 34.46 3.07
1821 1935 5.118050 CCACAATCGCATTTCATTATGATGC 59.882 40.000 9.92 9.92 41.99 3.91
1822 1936 5.688176 CACAATCGCATTTCATTATGATGCA 59.312 36.000 17.46 7.94 44.81 3.96
1823 1937 6.199342 CACAATCGCATTTCATTATGATGCAA 59.801 34.615 17.46 3.29 44.81 4.08
1824 1938 6.926826 ACAATCGCATTTCATTATGATGCAAT 59.073 30.769 17.46 5.29 44.81 3.56
1825 1939 6.944557 ATCGCATTTCATTATGATGCAATG 57.055 33.333 17.46 15.39 44.53 2.82
1826 1940 5.834169 TCGCATTTCATTATGATGCAATGT 58.166 33.333 18.98 0.00 43.98 2.71
1827 1941 5.900413 CGCATTTCATTATGATGCAATGTG 58.100 37.500 18.98 18.14 44.61 3.21
1828 1942 5.460748 CGCATTTCATTATGATGCAATGTGT 59.539 36.000 20.54 0.00 44.76 3.72
1829 1943 6.561350 CGCATTTCATTATGATGCAATGTGTG 60.561 38.462 20.54 10.61 44.76 3.82
1841 1955 3.733024 CAATGTGTGCCATTTGATTGC 57.267 42.857 0.00 0.00 41.93 3.56
1842 1956 3.067833 CAATGTGTGCCATTTGATTGCA 58.932 40.909 0.00 0.00 41.93 4.08
1843 1957 3.620427 ATGTGTGCCATTTGATTGCAT 57.380 38.095 0.00 0.00 37.34 3.96
1844 1958 3.404224 TGTGTGCCATTTGATTGCATT 57.596 38.095 0.00 0.00 37.34 3.56
1845 1959 4.532314 TGTGTGCCATTTGATTGCATTA 57.468 36.364 0.00 0.00 37.34 1.90
1846 1960 5.087391 TGTGTGCCATTTGATTGCATTAT 57.913 34.783 0.00 0.00 37.34 1.28
1847 1961 5.489249 TGTGTGCCATTTGATTGCATTATT 58.511 33.333 0.00 0.00 37.34 1.40
1848 1962 5.938710 TGTGTGCCATTTGATTGCATTATTT 59.061 32.000 0.00 0.00 37.34 1.40
1849 1963 6.092396 TGTGTGCCATTTGATTGCATTATTTC 59.908 34.615 0.00 0.00 37.34 2.17
1850 1964 5.291371 TGTGCCATTTGATTGCATTATTTCG 59.709 36.000 0.00 0.00 37.34 3.46
1851 1965 4.270566 TGCCATTTGATTGCATTATTTCGC 59.729 37.500 0.00 0.00 0.00 4.70
1852 1966 4.508861 GCCATTTGATTGCATTATTTCGCT 59.491 37.500 0.00 0.00 0.00 4.93
1853 1967 5.557514 GCCATTTGATTGCATTATTTCGCTG 60.558 40.000 0.00 0.00 0.00 5.18
1854 1968 5.521010 CCATTTGATTGCATTATTTCGCTGT 59.479 36.000 0.00 0.00 0.00 4.40
1855 1969 6.407623 CATTTGATTGCATTATTTCGCTGTG 58.592 36.000 0.00 0.00 0.00 3.66
1856 1970 4.961435 TGATTGCATTATTTCGCTGTGA 57.039 36.364 0.00 0.00 0.00 3.58
1857 1971 5.503662 TGATTGCATTATTTCGCTGTGAT 57.496 34.783 0.00 0.00 0.00 3.06
1858 1972 5.513376 TGATTGCATTATTTCGCTGTGATC 58.487 37.500 0.00 0.00 0.00 2.92
1859 1973 3.969117 TGCATTATTTCGCTGTGATCC 57.031 42.857 0.00 0.00 0.00 3.36
1860 1974 3.544684 TGCATTATTTCGCTGTGATCCT 58.455 40.909 0.00 0.00 0.00 3.24
1861 1975 4.702831 TGCATTATTTCGCTGTGATCCTA 58.297 39.130 0.00 0.00 0.00 2.94
1862 1976 4.751600 TGCATTATTTCGCTGTGATCCTAG 59.248 41.667 0.00 0.00 0.00 3.02
1863 1977 4.752101 GCATTATTTCGCTGTGATCCTAGT 59.248 41.667 0.00 0.00 0.00 2.57
1864 1978 5.926542 GCATTATTTCGCTGTGATCCTAGTA 59.073 40.000 0.00 0.00 0.00 1.82
1865 1979 6.423905 GCATTATTTCGCTGTGATCCTAGTAA 59.576 38.462 0.00 0.00 0.00 2.24
1866 1980 7.359598 GCATTATTTCGCTGTGATCCTAGTAAG 60.360 40.741 0.00 0.00 0.00 2.34
1867 1981 3.438297 TTCGCTGTGATCCTAGTAAGC 57.562 47.619 0.00 0.00 0.00 3.09
1868 1982 2.375146 TCGCTGTGATCCTAGTAAGCA 58.625 47.619 0.00 0.00 0.00 3.91
1869 1983 2.758423 TCGCTGTGATCCTAGTAAGCAA 59.242 45.455 0.00 0.00 0.00 3.91
1870 1984 3.384789 TCGCTGTGATCCTAGTAAGCAAT 59.615 43.478 0.00 0.00 0.00 3.56
1871 1985 3.492383 CGCTGTGATCCTAGTAAGCAATG 59.508 47.826 0.00 0.00 0.00 2.82
1885 1999 6.985117 AGTAAGCAATGTGTGACATTTGATT 58.015 32.000 15.45 15.45 45.80 2.57
1886 2000 6.864685 AGTAAGCAATGTGTGACATTTGATTG 59.135 34.615 18.54 12.24 45.80 2.67
1895 2009 6.018913 TGTGTGACATTTGATTGCATTGTTTC 60.019 34.615 0.00 0.00 0.00 2.78
1908 2022 3.126858 GCATTGTTTCGCTGTGATCCTAA 59.873 43.478 0.00 0.00 0.00 2.69
1927 2041 7.875327 TCCTAATAACCCTTGCTGTTTAATC 57.125 36.000 0.00 0.00 0.00 1.75
1964 2078 6.573664 TCTGGATTTACAACTGTCCATTTG 57.426 37.500 0.00 0.00 39.81 2.32
2018 2137 7.770433 TGTATATGCAAATGTCTACTTTCTGCT 59.230 33.333 0.00 5.92 0.00 4.24
2022 2141 4.023707 GCAAATGTCTACTTTCTGCTGTGT 60.024 41.667 0.00 0.00 0.00 3.72
2025 2144 3.728845 TGTCTACTTTCTGCTGTGTTCC 58.271 45.455 0.00 0.00 0.00 3.62
2026 2145 2.731976 GTCTACTTTCTGCTGTGTTCCG 59.268 50.000 0.00 0.00 0.00 4.30
2027 2146 2.364324 TCTACTTTCTGCTGTGTTCCGT 59.636 45.455 0.00 0.00 0.00 4.69
2028 2147 2.902705 ACTTTCTGCTGTGTTCCGTA 57.097 45.000 0.00 0.00 0.00 4.02
2029 2148 3.402628 ACTTTCTGCTGTGTTCCGTAT 57.597 42.857 0.00 0.00 0.00 3.06
2030 2149 3.067106 ACTTTCTGCTGTGTTCCGTATG 58.933 45.455 0.00 0.00 0.00 2.39
2031 2150 2.093306 TTCTGCTGTGTTCCGTATGG 57.907 50.000 0.00 0.00 0.00 2.74
2032 2151 1.262417 TCTGCTGTGTTCCGTATGGA 58.738 50.000 0.00 0.00 44.61 3.41
2033 2152 1.831106 TCTGCTGTGTTCCGTATGGAT 59.169 47.619 4.02 0.00 45.91 3.41
2034 2153 3.028130 TCTGCTGTGTTCCGTATGGATA 58.972 45.455 4.02 0.00 45.91 2.59
2035 2154 3.449377 TCTGCTGTGTTCCGTATGGATAA 59.551 43.478 4.02 0.00 45.91 1.75
2036 2155 4.081365 TCTGCTGTGTTCCGTATGGATAAA 60.081 41.667 4.02 0.00 45.91 1.40
2037 2156 4.580868 TGCTGTGTTCCGTATGGATAAAA 58.419 39.130 4.02 0.00 45.91 1.52
2038 2157 5.189928 TGCTGTGTTCCGTATGGATAAAAT 58.810 37.500 4.02 0.00 45.91 1.82
2039 2158 6.350103 TGCTGTGTTCCGTATGGATAAAATA 58.650 36.000 4.02 0.00 45.91 1.40
2040 2159 6.824196 TGCTGTGTTCCGTATGGATAAAATAA 59.176 34.615 4.02 0.00 45.91 1.40
2041 2160 7.337184 TGCTGTGTTCCGTATGGATAAAATAAA 59.663 33.333 4.02 0.00 45.91 1.40
2042 2161 7.855904 GCTGTGTTCCGTATGGATAAAATAAAG 59.144 37.037 4.02 0.00 45.91 1.85
2043 2162 8.215926 TGTGTTCCGTATGGATAAAATAAAGG 57.784 34.615 4.02 0.00 45.91 3.11
2044 2163 7.136772 GTGTTCCGTATGGATAAAATAAAGGC 58.863 38.462 4.02 0.00 45.91 4.35
2045 2164 6.263617 TGTTCCGTATGGATAAAATAAAGGCC 59.736 38.462 4.02 0.00 45.91 5.19
2051 2170 5.298989 TGGATAAAATAAAGGCCGCTCTA 57.701 39.130 0.00 0.00 0.00 2.43
2061 2180 0.815615 GGCCGCTCTACCTTGAATGG 60.816 60.000 0.00 0.00 0.00 3.16
2086 2205 4.133820 CTGAATCCTTGTGTGTTGGTGTA 58.866 43.478 0.00 0.00 0.00 2.90
2087 2206 4.724399 TGAATCCTTGTGTGTTGGTGTAT 58.276 39.130 0.00 0.00 0.00 2.29
2088 2207 5.870706 TGAATCCTTGTGTGTTGGTGTATA 58.129 37.500 0.00 0.00 0.00 1.47
2092 2211 8.871629 AATCCTTGTGTGTTGGTGTATATTAA 57.128 30.769 0.00 0.00 0.00 1.40
2123 2242 6.564709 ATTCGCACATATATCACAAATGCT 57.435 33.333 0.00 0.00 0.00 3.79
2125 2244 3.910170 CGCACATATATCACAAATGCTGC 59.090 43.478 0.00 0.00 0.00 5.25
2145 2264 5.092554 TGCGTTCCACTATTCCATAGAAA 57.907 39.130 0.00 0.00 35.09 2.52
2146 2265 5.116180 TGCGTTCCACTATTCCATAGAAAG 58.884 41.667 0.00 0.00 35.09 2.62
2149 2268 6.018669 GCGTTCCACTATTCCATAGAAAGAAG 60.019 42.308 0.00 0.00 35.09 2.85
2150 2269 6.480320 CGTTCCACTATTCCATAGAAAGAAGG 59.520 42.308 0.00 1.16 35.09 3.46
2155 2274 8.705594 CCACTATTCCATAGAAAGAAGGAAGTA 58.294 37.037 0.00 0.00 42.84 2.24
2164 2283 8.680903 CATAGAAAGAAGGAAGTAATTGTGCAT 58.319 33.333 0.00 0.00 0.00 3.96
2190 2309 9.748708 TTATGTATGCAAATTTAATTCTGCTCC 57.251 29.630 18.14 10.79 35.78 4.70
2193 2312 5.981088 TGCAAATTTAATTCTGCTCCTCA 57.019 34.783 18.14 3.74 35.78 3.86
2204 2323 0.395686 TGCTCCTCATATCTGCAGGC 59.604 55.000 15.13 6.36 0.00 4.85
2230 2349 6.484643 ACTGCTGAATGTATGAACCATATGAC 59.515 38.462 3.65 0.00 0.00 3.06
2231 2350 5.764686 TGCTGAATGTATGAACCATATGACC 59.235 40.000 3.65 0.00 0.00 4.02
2272 2391 0.877071 CATTGTGGGACTGTCAGTGC 59.123 55.000 15.68 15.68 35.67 4.40
2281 2400 2.821969 GGACTGTCAGTGCCAATTGAAT 59.178 45.455 11.04 0.00 29.54 2.57
2294 2413 4.322198 GCCAATTGAATCTTTTCAGGCTCA 60.322 41.667 7.12 0.00 42.85 4.26
2300 2419 4.520492 TGAATCTTTTCAGGCTCAAAGGTC 59.480 41.667 13.32 11.68 36.94 3.85
2301 2420 3.576078 TCTTTTCAGGCTCAAAGGTCA 57.424 42.857 13.32 0.00 31.86 4.02
2302 2421 3.214328 TCTTTTCAGGCTCAAAGGTCAC 58.786 45.455 13.32 0.00 31.86 3.67
2333 2455 5.337975 GGATTCTCTTAGTTGCCTTCACTCT 60.338 44.000 0.00 0.00 0.00 3.24
2359 2481 7.967890 ATTTTGTTGATGAATTTTCTGTCCC 57.032 32.000 0.00 0.00 0.00 4.46
2416 2538 6.674694 ATCAGATAAGAAACATGTGCTGAC 57.325 37.500 0.00 0.00 34.42 3.51
2426 2548 2.665649 ATGTGCTGACATGCATTTGG 57.334 45.000 0.00 0.00 45.23 3.28
2427 2549 1.330234 TGTGCTGACATGCATTTGGT 58.670 45.000 0.00 0.00 45.23 3.67
2428 2550 1.687660 TGTGCTGACATGCATTTGGTT 59.312 42.857 0.00 0.00 45.23 3.67
2429 2551 2.102757 TGTGCTGACATGCATTTGGTTT 59.897 40.909 0.00 0.00 45.23 3.27
2430 2552 2.733026 GTGCTGACATGCATTTGGTTTC 59.267 45.455 0.00 0.00 45.23 2.78
2431 2553 2.629137 TGCTGACATGCATTTGGTTTCT 59.371 40.909 0.00 0.00 38.12 2.52
2432 2554 3.069872 TGCTGACATGCATTTGGTTTCTT 59.930 39.130 0.00 0.00 38.12 2.52
2433 2555 3.430895 GCTGACATGCATTTGGTTTCTTG 59.569 43.478 0.00 0.00 0.00 3.02
2434 2556 4.624015 CTGACATGCATTTGGTTTCTTGT 58.376 39.130 0.00 0.00 0.00 3.16
2435 2557 5.021033 TGACATGCATTTGGTTTCTTGTT 57.979 34.783 0.00 0.00 0.00 2.83
2436 2558 6.154203 TGACATGCATTTGGTTTCTTGTTA 57.846 33.333 0.00 0.00 0.00 2.41
2437 2559 6.215121 TGACATGCATTTGGTTTCTTGTTAG 58.785 36.000 0.00 0.00 0.00 2.34
2438 2560 6.040278 TGACATGCATTTGGTTTCTTGTTAGA 59.960 34.615 0.00 0.00 0.00 2.10
2439 2561 6.815089 ACATGCATTTGGTTTCTTGTTAGAA 58.185 32.000 0.00 0.00 38.61 2.10
2440 2562 6.925165 ACATGCATTTGGTTTCTTGTTAGAAG 59.075 34.615 0.00 0.00 41.25 2.85
2441 2563 6.463995 TGCATTTGGTTTCTTGTTAGAAGT 57.536 33.333 0.00 0.00 41.25 3.01
2442 2564 7.575414 TGCATTTGGTTTCTTGTTAGAAGTA 57.425 32.000 0.00 0.00 41.25 2.24
2443 2565 7.422399 TGCATTTGGTTTCTTGTTAGAAGTAC 58.578 34.615 0.00 0.00 41.25 2.73
2444 2566 7.284489 TGCATTTGGTTTCTTGTTAGAAGTACT 59.716 33.333 0.00 0.00 41.25 2.73
2445 2567 8.780249 GCATTTGGTTTCTTGTTAGAAGTACTA 58.220 33.333 0.00 0.00 41.25 1.82
2448 2570 8.842358 TTGGTTTCTTGTTAGAAGTACTATGG 57.158 34.615 0.00 0.00 41.25 2.74
2449 2571 7.970102 TGGTTTCTTGTTAGAAGTACTATGGT 58.030 34.615 0.00 0.00 41.25 3.55
2450 2572 7.876068 TGGTTTCTTGTTAGAAGTACTATGGTG 59.124 37.037 0.00 0.00 41.25 4.17
2451 2573 7.148457 GGTTTCTTGTTAGAAGTACTATGGTGC 60.148 40.741 0.00 0.00 41.25 5.01
2452 2574 6.599356 TCTTGTTAGAAGTACTATGGTGCA 57.401 37.500 0.00 0.00 0.00 4.57
2453 2575 6.395629 TCTTGTTAGAAGTACTATGGTGCAC 58.604 40.000 8.80 8.80 0.00 4.57
2454 2576 5.995565 TGTTAGAAGTACTATGGTGCACT 57.004 39.130 17.98 0.00 0.00 4.40
2455 2577 5.720202 TGTTAGAAGTACTATGGTGCACTG 58.280 41.667 17.98 7.41 0.00 3.66
2456 2578 3.252974 AGAAGTACTATGGTGCACTGC 57.747 47.619 17.98 0.83 0.00 4.40
2457 2579 2.093447 AGAAGTACTATGGTGCACTGCC 60.093 50.000 17.98 0.00 0.00 4.85
2458 2580 0.541863 AGTACTATGGTGCACTGCCC 59.458 55.000 17.98 0.00 0.00 5.36
2459 2581 0.541863 GTACTATGGTGCACTGCCCT 59.458 55.000 17.98 0.00 0.00 5.19
2460 2582 1.065418 GTACTATGGTGCACTGCCCTT 60.065 52.381 17.98 0.54 0.00 3.95
2461 2583 0.035056 ACTATGGTGCACTGCCCTTC 60.035 55.000 17.98 0.00 0.00 3.46
2462 2584 0.749454 CTATGGTGCACTGCCCTTCC 60.749 60.000 17.98 0.00 0.00 3.46
2463 2585 1.207488 TATGGTGCACTGCCCTTCCT 61.207 55.000 17.98 0.00 0.00 3.36
2464 2586 2.085343 ATGGTGCACTGCCCTTCCTT 62.085 55.000 17.98 0.00 0.00 3.36
2465 2587 2.270986 GGTGCACTGCCCTTCCTTG 61.271 63.158 17.98 0.00 0.00 3.61
2466 2588 2.115910 TGCACTGCCCTTCCTTGG 59.884 61.111 0.00 0.00 0.00 3.61
2472 2594 2.759795 GCCCTTCCTTGGCTCTGT 59.240 61.111 0.00 0.00 45.70 3.41
2473 2595 1.676967 GCCCTTCCTTGGCTCTGTG 60.677 63.158 0.00 0.00 45.70 3.66
2474 2596 2.069776 CCCTTCCTTGGCTCTGTGA 58.930 57.895 0.00 0.00 0.00 3.58
2475 2597 0.622665 CCCTTCCTTGGCTCTGTGAT 59.377 55.000 0.00 0.00 0.00 3.06
2476 2598 1.407989 CCCTTCCTTGGCTCTGTGATC 60.408 57.143 0.00 0.00 0.00 2.92
2477 2599 1.558756 CCTTCCTTGGCTCTGTGATCT 59.441 52.381 0.00 0.00 0.00 2.75
2478 2600 2.630158 CTTCCTTGGCTCTGTGATCTG 58.370 52.381 0.00 0.00 0.00 2.90
2479 2601 0.251354 TCCTTGGCTCTGTGATCTGC 59.749 55.000 0.00 0.00 0.00 4.26
2480 2602 0.252479 CCTTGGCTCTGTGATCTGCT 59.748 55.000 0.00 0.00 0.00 4.24
2481 2603 1.339824 CCTTGGCTCTGTGATCTGCTT 60.340 52.381 0.00 0.00 0.00 3.91
2482 2604 1.738350 CTTGGCTCTGTGATCTGCTTG 59.262 52.381 0.00 0.00 0.00 4.01
2483 2605 0.689055 TGGCTCTGTGATCTGCTTGT 59.311 50.000 0.00 0.00 0.00 3.16
2484 2606 1.085091 GGCTCTGTGATCTGCTTGTG 58.915 55.000 0.00 0.00 0.00 3.33
2485 2607 1.610102 GGCTCTGTGATCTGCTTGTGT 60.610 52.381 0.00 0.00 0.00 3.72
2486 2608 2.149578 GCTCTGTGATCTGCTTGTGTT 58.850 47.619 0.00 0.00 0.00 3.32
2487 2609 2.095869 GCTCTGTGATCTGCTTGTGTTG 60.096 50.000 0.00 0.00 0.00 3.33
2488 2610 3.136763 CTCTGTGATCTGCTTGTGTTGT 58.863 45.455 0.00 0.00 0.00 3.32
2489 2611 2.874086 TCTGTGATCTGCTTGTGTTGTG 59.126 45.455 0.00 0.00 0.00 3.33
2490 2612 1.948834 TGTGATCTGCTTGTGTTGTGG 59.051 47.619 0.00 0.00 0.00 4.17
2491 2613 0.953727 TGATCTGCTTGTGTTGTGGC 59.046 50.000 0.00 0.00 0.00 5.01
2492 2614 0.953727 GATCTGCTTGTGTTGTGGCA 59.046 50.000 0.00 0.00 0.00 4.92
2493 2615 1.337703 GATCTGCTTGTGTTGTGGCAA 59.662 47.619 0.00 0.00 34.21 4.52
2494 2616 1.180907 TCTGCTTGTGTTGTGGCAAA 58.819 45.000 0.00 0.00 34.21 3.68
2495 2617 1.547820 TCTGCTTGTGTTGTGGCAAAA 59.452 42.857 0.00 0.00 34.21 2.44
2496 2618 1.928503 CTGCTTGTGTTGTGGCAAAAG 59.071 47.619 0.00 0.00 36.91 2.27
2497 2619 1.547820 TGCTTGTGTTGTGGCAAAAGA 59.452 42.857 0.00 0.00 36.13 2.52
2498 2620 2.168106 TGCTTGTGTTGTGGCAAAAGAT 59.832 40.909 0.00 0.00 36.13 2.40
2499 2621 3.197265 GCTTGTGTTGTGGCAAAAGATT 58.803 40.909 0.00 0.00 36.13 2.40
2500 2622 3.245990 GCTTGTGTTGTGGCAAAAGATTC 59.754 43.478 0.00 0.00 36.13 2.52
2501 2623 4.431809 CTTGTGTTGTGGCAAAAGATTCA 58.568 39.130 0.00 0.00 36.13 2.57
2502 2624 4.462508 TGTGTTGTGGCAAAAGATTCAA 57.537 36.364 0.00 0.00 0.00 2.69
2503 2625 5.021033 TGTGTTGTGGCAAAAGATTCAAT 57.979 34.783 0.00 0.00 0.00 2.57
2504 2626 5.426504 TGTGTTGTGGCAAAAGATTCAATT 58.573 33.333 0.00 0.00 0.00 2.32
2505 2627 5.879223 TGTGTTGTGGCAAAAGATTCAATTT 59.121 32.000 0.00 0.00 0.00 1.82
2506 2628 6.373774 TGTGTTGTGGCAAAAGATTCAATTTT 59.626 30.769 0.00 0.00 0.00 1.82
2507 2629 6.687958 GTGTTGTGGCAAAAGATTCAATTTTG 59.312 34.615 6.76 6.76 45.92 2.44
2508 2630 6.183360 TGTTGTGGCAAAAGATTCAATTTTGG 60.183 34.615 11.76 0.00 44.23 3.28
2509 2631 5.435291 TGTGGCAAAAGATTCAATTTTGGT 58.565 33.333 11.76 0.00 44.23 3.67
2510 2632 5.296283 TGTGGCAAAAGATTCAATTTTGGTG 59.704 36.000 11.76 0.00 44.23 4.17
2511 2633 5.296531 GTGGCAAAAGATTCAATTTTGGTGT 59.703 36.000 11.76 0.00 44.23 4.16
2512 2634 6.481644 GTGGCAAAAGATTCAATTTTGGTGTA 59.518 34.615 11.76 0.00 44.23 2.90
2513 2635 7.011857 GTGGCAAAAGATTCAATTTTGGTGTAA 59.988 33.333 11.76 0.00 44.23 2.41
2514 2636 7.718753 TGGCAAAAGATTCAATTTTGGTGTAAT 59.281 29.630 11.76 0.00 44.23 1.89
2515 2637 8.016801 GGCAAAAGATTCAATTTTGGTGTAATG 58.983 33.333 11.76 0.00 44.23 1.90
2516 2638 8.558700 GCAAAAGATTCAATTTTGGTGTAATGT 58.441 29.630 11.76 0.00 44.23 2.71
2517 2639 9.866936 CAAAAGATTCAATTTTGGTGTAATGTG 57.133 29.630 3.77 0.00 41.69 3.21
2518 2640 8.606040 AAAGATTCAATTTTGGTGTAATGTGG 57.394 30.769 0.00 0.00 0.00 4.17
2519 2641 7.301868 AGATTCAATTTTGGTGTAATGTGGT 57.698 32.000 0.00 0.00 0.00 4.16
2520 2642 7.153985 AGATTCAATTTTGGTGTAATGTGGTG 58.846 34.615 0.00 0.00 0.00 4.17
2521 2643 5.207110 TCAATTTTGGTGTAATGTGGTGG 57.793 39.130 0.00 0.00 0.00 4.61
2522 2644 3.676291 ATTTTGGTGTAATGTGGTGGC 57.324 42.857 0.00 0.00 0.00 5.01
2523 2645 1.333177 TTTGGTGTAATGTGGTGGCC 58.667 50.000 0.00 0.00 0.00 5.36
2524 2646 0.186143 TTGGTGTAATGTGGTGGCCA 59.814 50.000 0.00 0.00 0.00 5.36
2525 2647 0.251121 TGGTGTAATGTGGTGGCCAG 60.251 55.000 5.11 0.00 32.34 4.85
2526 2648 0.251165 GGTGTAATGTGGTGGCCAGT 60.251 55.000 5.11 0.00 32.34 4.00
2527 2649 1.616159 GTGTAATGTGGTGGCCAGTT 58.384 50.000 5.11 0.00 32.34 3.16
2528 2650 2.553466 GGTGTAATGTGGTGGCCAGTTA 60.553 50.000 5.11 0.00 32.34 2.24
2529 2651 3.150767 GTGTAATGTGGTGGCCAGTTAA 58.849 45.455 5.11 0.00 32.34 2.01
2530 2652 3.057806 GTGTAATGTGGTGGCCAGTTAAC 60.058 47.826 5.11 2.45 32.34 2.01
2531 2653 1.627864 AATGTGGTGGCCAGTTAACC 58.372 50.000 5.11 3.39 32.34 2.85
2532 2654 0.480690 ATGTGGTGGCCAGTTAACCA 59.519 50.000 5.11 6.85 41.66 3.67
2533 2655 0.259065 TGTGGTGGCCAGTTAACCAA 59.741 50.000 13.30 2.57 45.26 3.67
2534 2656 0.671796 GTGGTGGCCAGTTAACCAAC 59.328 55.000 13.30 5.17 45.26 3.77
2535 2657 0.553819 TGGTGGCCAGTTAACCAACT 59.446 50.000 5.11 0.00 44.42 3.16
2536 2658 1.775459 TGGTGGCCAGTTAACCAACTA 59.225 47.619 5.11 0.00 44.42 2.24
2537 2659 2.156917 GGTGGCCAGTTAACCAACTAC 58.843 52.381 5.11 0.00 43.30 2.73
2538 2660 2.487625 GGTGGCCAGTTAACCAACTACA 60.488 50.000 5.11 0.00 43.30 2.74
2539 2661 2.812011 GTGGCCAGTTAACCAACTACAG 59.188 50.000 5.11 0.00 43.30 2.74
2540 2662 2.706723 TGGCCAGTTAACCAACTACAGA 59.293 45.455 0.00 0.00 43.30 3.41
2541 2663 3.329520 TGGCCAGTTAACCAACTACAGAT 59.670 43.478 0.00 0.00 43.30 2.90
2542 2664 4.202524 TGGCCAGTTAACCAACTACAGATT 60.203 41.667 0.00 0.00 43.30 2.40
2543 2665 4.765339 GGCCAGTTAACCAACTACAGATTT 59.235 41.667 0.00 0.00 43.30 2.17
2544 2666 5.335661 GGCCAGTTAACCAACTACAGATTTG 60.336 44.000 0.00 0.00 43.30 2.32
2545 2667 5.240844 GCCAGTTAACCAACTACAGATTTGT 59.759 40.000 0.88 0.00 43.30 2.83
2546 2668 6.428771 GCCAGTTAACCAACTACAGATTTGTA 59.571 38.462 0.88 0.00 43.30 2.41
2547 2669 7.572539 GCCAGTTAACCAACTACAGATTTGTAC 60.573 40.741 0.88 0.00 43.30 2.90
2548 2670 7.442969 CCAGTTAACCAACTACAGATTTGTACA 59.557 37.037 0.88 0.00 43.30 2.90
2549 2671 8.280497 CAGTTAACCAACTACAGATTTGTACAC 58.720 37.037 0.88 0.00 43.30 2.90
2550 2672 8.208903 AGTTAACCAACTACAGATTTGTACACT 58.791 33.333 0.88 0.00 43.33 3.55
2551 2673 6.861065 AACCAACTACAGATTTGTACACTG 57.139 37.500 9.73 9.73 38.76 3.66
2552 2674 5.305585 ACCAACTACAGATTTGTACACTGG 58.694 41.667 14.44 10.12 38.76 4.00
2553 2675 5.071250 ACCAACTACAGATTTGTACACTGGA 59.929 40.000 14.44 6.78 38.76 3.86
2554 2676 6.173339 CCAACTACAGATTTGTACACTGGAT 58.827 40.000 14.44 0.00 38.76 3.41
2555 2677 6.655003 CCAACTACAGATTTGTACACTGGATT 59.345 38.462 14.44 0.23 38.76 3.01
2556 2678 7.822334 CCAACTACAGATTTGTACACTGGATTA 59.178 37.037 14.44 0.72 38.76 1.75
2557 2679 9.383519 CAACTACAGATTTGTACACTGGATTAT 57.616 33.333 14.44 0.00 38.76 1.28
2558 2680 9.959721 AACTACAGATTTGTACACTGGATTATT 57.040 29.630 14.44 1.57 38.76 1.40
2562 2684 8.840321 ACAGATTTGTACACTGGATTATTATGC 58.160 33.333 14.44 0.00 35.25 3.14
2563 2685 8.839343 CAGATTTGTACACTGGATTATTATGCA 58.161 33.333 0.00 0.00 0.00 3.96
2582 2704 9.801873 ATTATGCAGTTATAAAACATGGTCAAC 57.198 29.630 0.00 0.00 38.12 3.18
2583 2705 6.019779 TGCAGTTATAAAACATGGTCAACC 57.980 37.500 0.00 0.00 38.12 3.77
2584 2706 5.536538 TGCAGTTATAAAACATGGTCAACCA 59.463 36.000 3.97 3.97 40.89 3.67
2585 2707 6.040955 TGCAGTTATAAAACATGGTCAACCAA 59.959 34.615 5.87 0.00 40.40 3.67
2586 2708 7.096551 GCAGTTATAAAACATGGTCAACCAAT 58.903 34.615 5.87 0.00 40.40 3.16
2587 2709 7.602265 GCAGTTATAAAACATGGTCAACCAATT 59.398 33.333 5.87 1.26 40.40 2.32
2588 2710 8.924691 CAGTTATAAAACATGGTCAACCAATTG 58.075 33.333 5.87 3.65 40.40 2.32
2589 2711 8.646900 AGTTATAAAACATGGTCAACCAATTGT 58.353 29.630 5.87 4.32 40.03 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.362831 CGCAAAGCAAAAGCTCATTGTAG 59.637 43.478 12.28 3.77 0.00 2.74
83 84 4.984161 AGGACTGCAAATGAAAAATTCACG 59.016 37.500 0.00 0.00 43.48 4.35
156 157 7.779798 AGCAGTAAAAGGGCTTGATATATTCAA 59.220 33.333 0.00 0.00 42.09 2.69
186 187 0.326808 TAGGATGGGGGTGGGTACAC 60.327 60.000 0.00 0.00 46.97 2.90
215 216 9.241919 TCAAGCAAAAATATATCAACAGAGGAA 57.758 29.630 0.00 0.00 0.00 3.36
220 221 9.844790 TGAACTCAAGCAAAAATATATCAACAG 57.155 29.630 0.00 0.00 0.00 3.16
256 259 5.616204 CGATATCGTACGCAAATCTGGTAGA 60.616 44.000 17.06 0.00 34.11 2.59
257 260 4.553815 CGATATCGTACGCAAATCTGGTAG 59.446 45.833 17.06 0.00 34.11 3.18
273 276 5.043903 ACTCAGAAAATGTGGACGATATCG 58.956 41.667 23.18 23.18 46.33 2.92
288 291 4.840680 TCTCCTTCCATCAGAACTCAGAAA 59.159 41.667 0.00 0.00 0.00 2.52
323 333 1.068125 TCACAAGATGCAGCATGTTGC 60.068 47.619 34.20 25.78 45.17 4.17
340 350 4.125703 CTGACATTAGCTCCTTCCATCAC 58.874 47.826 0.00 0.00 0.00 3.06
529 629 7.484641 CGACATGGGTAAATGAATTTAAGTGTG 59.515 37.037 0.00 0.00 34.36 3.82
559 659 2.358957 TGTTTTGGATCATCAGGCGAG 58.641 47.619 0.00 0.00 0.00 5.03
562 662 5.964758 TGTAATTGTTTTGGATCATCAGGC 58.035 37.500 0.00 0.00 0.00 4.85
574 674 9.426837 CAGGAAATGATGTGATGTAATTGTTTT 57.573 29.630 0.00 0.00 0.00 2.43
686 786 7.499321 TTTAAGAAGCAAGTGAACCGAATTA 57.501 32.000 0.00 0.00 0.00 1.40
856 959 3.117169 AGCCCAATGAGCCCATTATGTTA 60.117 43.478 0.00 0.00 40.81 2.41
888 991 2.050144 GATCTGGACTTAGGCCCATGA 58.950 52.381 0.00 0.00 0.00 3.07
889 992 1.072965 GGATCTGGACTTAGGCCCATG 59.927 57.143 0.00 0.00 0.00 3.66
916 1019 1.901833 GGAAATGAAACCATGGCCTGT 59.098 47.619 13.04 0.00 0.00 4.00
972 1075 0.549413 GGGAGGTTAGGGTTCTGGGT 60.549 60.000 0.00 0.00 0.00 4.51
1500 1603 2.669133 CCCTCCCTTGATCACGGCA 61.669 63.158 12.74 0.00 0.00 5.69
1548 1651 2.688666 AGGGCCTTCATCCGCTCA 60.689 61.111 0.00 0.00 0.00 4.26
1650 1753 2.034687 AATGTGCCGGCTCAAGCT 59.965 55.556 32.53 18.21 41.70 3.74
1660 1763 1.542915 ACAGCAAGTCATCAATGTGCC 59.457 47.619 0.00 0.00 35.80 5.01
1667 1770 5.764686 ACAATTTCACTACAGCAAGTCATCA 59.235 36.000 0.00 0.00 0.00 3.07
1692 1795 1.740025 GAAAGGGCCATCAGTTTCTCG 59.260 52.381 6.18 0.00 0.00 4.04
1721 1824 3.629142 ACATCCTAGGTAGCAACAACC 57.371 47.619 9.08 0.00 37.27 3.77
1724 1829 2.355716 GGCAACATCCTAGGTAGCAACA 60.356 50.000 9.08 0.00 0.00 3.33
1743 1848 4.927425 GCATCATAATGAAATGTGATGGGC 59.073 41.667 13.96 0.09 44.18 5.36
1771 1885 5.431765 ACATTACTGGATTAGACAGCAAGG 58.568 41.667 0.00 0.00 39.55 3.61
1772 1886 6.480320 GGTACATTACTGGATTAGACAGCAAG 59.520 42.308 0.00 0.00 39.55 4.01
1773 1887 6.346096 GGTACATTACTGGATTAGACAGCAA 58.654 40.000 0.00 0.00 39.55 3.91
1774 1888 5.163343 GGGTACATTACTGGATTAGACAGCA 60.163 44.000 0.00 0.00 39.55 4.41
1775 1889 5.163343 TGGGTACATTACTGGATTAGACAGC 60.163 44.000 0.00 0.00 39.55 4.40
1776 1890 6.127168 TGTGGGTACATTACTGGATTAGACAG 60.127 42.308 0.00 0.00 41.64 3.51
1777 1891 5.722441 TGTGGGTACATTACTGGATTAGACA 59.278 40.000 0.00 0.00 0.00 3.41
1778 1892 6.229936 TGTGGGTACATTACTGGATTAGAC 57.770 41.667 0.00 0.00 0.00 2.59
1779 1893 6.877668 TTGTGGGTACATTACTGGATTAGA 57.122 37.500 0.00 0.00 36.53 2.10
1780 1894 6.423905 CGATTGTGGGTACATTACTGGATTAG 59.576 42.308 0.00 0.00 36.53 1.73
1781 1895 6.285224 CGATTGTGGGTACATTACTGGATTA 58.715 40.000 0.00 0.00 36.53 1.75
1782 1896 5.123227 CGATTGTGGGTACATTACTGGATT 58.877 41.667 0.00 0.00 36.53 3.01
1783 1897 4.703897 CGATTGTGGGTACATTACTGGAT 58.296 43.478 0.00 0.00 36.53 3.41
1784 1898 3.680475 GCGATTGTGGGTACATTACTGGA 60.680 47.826 0.00 0.00 36.53 3.86
1785 1899 2.612212 GCGATTGTGGGTACATTACTGG 59.388 50.000 0.00 0.00 36.53 4.00
1786 1900 3.266636 TGCGATTGTGGGTACATTACTG 58.733 45.455 0.00 0.00 36.53 2.74
1787 1901 3.620427 TGCGATTGTGGGTACATTACT 57.380 42.857 0.00 0.00 36.53 2.24
1788 1902 4.893424 AATGCGATTGTGGGTACATTAC 57.107 40.909 0.00 0.00 36.53 1.89
1789 1903 4.944317 TGAAATGCGATTGTGGGTACATTA 59.056 37.500 0.00 0.00 36.53 1.90
1790 1904 3.761218 TGAAATGCGATTGTGGGTACATT 59.239 39.130 0.00 0.00 36.53 2.71
1791 1905 3.351740 TGAAATGCGATTGTGGGTACAT 58.648 40.909 0.00 0.00 36.53 2.29
1792 1906 2.784347 TGAAATGCGATTGTGGGTACA 58.216 42.857 0.00 0.00 34.31 2.90
1793 1907 4.370364 AATGAAATGCGATTGTGGGTAC 57.630 40.909 0.00 0.00 0.00 3.34
1794 1908 5.825151 TCATAATGAAATGCGATTGTGGGTA 59.175 36.000 0.00 0.00 0.00 3.69
1795 1909 4.644234 TCATAATGAAATGCGATTGTGGGT 59.356 37.500 0.00 0.00 0.00 4.51
1796 1910 5.185668 TCATAATGAAATGCGATTGTGGG 57.814 39.130 0.00 0.00 0.00 4.61
1797 1911 5.118050 GCATCATAATGAAATGCGATTGTGG 59.882 40.000 0.00 0.00 36.75 4.17
1798 1912 5.688176 TGCATCATAATGAAATGCGATTGTG 59.312 36.000 5.37 0.00 46.86 3.33
1799 1913 5.834169 TGCATCATAATGAAATGCGATTGT 58.166 33.333 5.37 0.00 46.86 2.71
1800 1914 6.757026 TTGCATCATAATGAAATGCGATTG 57.243 33.333 0.00 0.00 46.86 2.67
1801 1915 7.346208 CATTGCATCATAATGAAATGCGATT 57.654 32.000 0.00 0.00 46.85 3.34
1802 1916 6.944557 CATTGCATCATAATGAAATGCGAT 57.055 33.333 0.00 7.73 46.85 4.58
1827 1941 5.730269 CGAAATAATGCAATCAAATGGCAC 58.270 37.500 0.00 0.00 40.83 5.01
1828 1942 4.270566 GCGAAATAATGCAATCAAATGGCA 59.729 37.500 0.00 0.00 42.43 4.92
1829 1943 4.508861 AGCGAAATAATGCAATCAAATGGC 59.491 37.500 0.00 0.00 0.00 4.40
1830 1944 5.521010 ACAGCGAAATAATGCAATCAAATGG 59.479 36.000 0.00 0.00 0.00 3.16
1831 1945 6.253942 TCACAGCGAAATAATGCAATCAAATG 59.746 34.615 0.00 0.00 0.00 2.32
1832 1946 6.331845 TCACAGCGAAATAATGCAATCAAAT 58.668 32.000 0.00 0.00 0.00 2.32
1833 1947 5.707931 TCACAGCGAAATAATGCAATCAAA 58.292 33.333 0.00 0.00 0.00 2.69
1834 1948 5.307926 TCACAGCGAAATAATGCAATCAA 57.692 34.783 0.00 0.00 0.00 2.57
1835 1949 4.961435 TCACAGCGAAATAATGCAATCA 57.039 36.364 0.00 0.00 0.00 2.57
1836 1950 4.913924 GGATCACAGCGAAATAATGCAATC 59.086 41.667 0.00 0.00 0.00 2.67
1837 1951 4.581824 AGGATCACAGCGAAATAATGCAAT 59.418 37.500 0.00 0.00 0.00 3.56
1838 1952 3.947196 AGGATCACAGCGAAATAATGCAA 59.053 39.130 0.00 0.00 0.00 4.08
1839 1953 3.544684 AGGATCACAGCGAAATAATGCA 58.455 40.909 0.00 0.00 0.00 3.96
1840 1954 4.752101 ACTAGGATCACAGCGAAATAATGC 59.248 41.667 0.00 0.00 0.00 3.56
1841 1955 7.359598 GCTTACTAGGATCACAGCGAAATAATG 60.360 40.741 0.00 0.00 0.00 1.90
1842 1956 6.647067 GCTTACTAGGATCACAGCGAAATAAT 59.353 38.462 0.00 0.00 0.00 1.28
1843 1957 5.983720 GCTTACTAGGATCACAGCGAAATAA 59.016 40.000 0.00 0.00 0.00 1.40
1844 1958 5.068591 TGCTTACTAGGATCACAGCGAAATA 59.931 40.000 0.00 0.00 0.00 1.40
1845 1959 4.141937 TGCTTACTAGGATCACAGCGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
1846 1960 3.194755 TGCTTACTAGGATCACAGCGAAA 59.805 43.478 0.00 0.00 0.00 3.46
1847 1961 2.758423 TGCTTACTAGGATCACAGCGAA 59.242 45.455 0.00 0.00 0.00 4.70
1848 1962 2.375146 TGCTTACTAGGATCACAGCGA 58.625 47.619 0.00 0.00 0.00 4.93
1849 1963 2.871182 TGCTTACTAGGATCACAGCG 57.129 50.000 0.00 0.00 0.00 5.18
1850 1964 4.272018 CACATTGCTTACTAGGATCACAGC 59.728 45.833 0.00 0.00 0.00 4.40
1851 1965 5.292834 CACACATTGCTTACTAGGATCACAG 59.707 44.000 0.00 0.00 0.00 3.66
1852 1966 5.046663 TCACACATTGCTTACTAGGATCACA 60.047 40.000 0.00 0.00 0.00 3.58
1853 1967 5.292101 GTCACACATTGCTTACTAGGATCAC 59.708 44.000 0.00 0.00 0.00 3.06
1854 1968 5.046663 TGTCACACATTGCTTACTAGGATCA 60.047 40.000 0.00 0.00 0.00 2.92
1855 1969 5.419542 TGTCACACATTGCTTACTAGGATC 58.580 41.667 0.00 0.00 0.00 3.36
1856 1970 5.420725 TGTCACACATTGCTTACTAGGAT 57.579 39.130 0.00 0.00 0.00 3.24
1857 1971 4.882842 TGTCACACATTGCTTACTAGGA 57.117 40.909 0.00 0.00 0.00 2.94
1869 1983 5.543714 ACAATGCAATCAAATGTCACACAT 58.456 33.333 0.00 0.00 41.31 3.21
1870 1984 4.946445 ACAATGCAATCAAATGTCACACA 58.054 34.783 0.00 0.00 0.00 3.72
1871 1985 5.910637 AACAATGCAATCAAATGTCACAC 57.089 34.783 0.00 0.00 0.00 3.82
1885 1999 1.199789 GGATCACAGCGAAACAATGCA 59.800 47.619 0.00 0.00 0.00 3.96
1886 2000 1.470098 AGGATCACAGCGAAACAATGC 59.530 47.619 0.00 0.00 0.00 3.56
1895 2009 3.753294 AGGGTTATTAGGATCACAGCG 57.247 47.619 0.00 0.00 0.00 5.18
1908 2022 4.013728 TGCGATTAAACAGCAAGGGTTAT 58.986 39.130 0.00 0.00 38.01 1.89
1927 2041 0.592637 TCCAGAAATGTGCAGTTGCG 59.407 50.000 0.00 0.00 45.83 4.85
1992 2108 7.770433 AGCAGAAAGTAGACATTTGCATATACA 59.230 33.333 0.00 0.00 32.79 2.29
1996 2112 5.939883 ACAGCAGAAAGTAGACATTTGCATA 59.060 36.000 0.00 0.00 32.79 3.14
2025 2144 4.454504 AGCGGCCTTTATTTTATCCATACG 59.545 41.667 0.00 0.00 0.00 3.06
2026 2145 5.705905 AGAGCGGCCTTTATTTTATCCATAC 59.294 40.000 0.00 0.00 0.00 2.39
2027 2146 5.876357 AGAGCGGCCTTTATTTTATCCATA 58.124 37.500 0.00 0.00 0.00 2.74
2028 2147 4.729868 AGAGCGGCCTTTATTTTATCCAT 58.270 39.130 0.00 0.00 0.00 3.41
2029 2148 4.164843 AGAGCGGCCTTTATTTTATCCA 57.835 40.909 0.00 0.00 0.00 3.41
2030 2149 4.454847 GGTAGAGCGGCCTTTATTTTATCC 59.545 45.833 0.00 0.00 0.00 2.59
2031 2150 5.306394 AGGTAGAGCGGCCTTTATTTTATC 58.694 41.667 0.00 0.00 0.00 1.75
2032 2151 5.306114 AGGTAGAGCGGCCTTTATTTTAT 57.694 39.130 0.00 0.00 0.00 1.40
2033 2152 4.765813 AGGTAGAGCGGCCTTTATTTTA 57.234 40.909 0.00 0.00 0.00 1.52
2034 2153 3.646736 AGGTAGAGCGGCCTTTATTTT 57.353 42.857 0.00 0.00 0.00 1.82
2035 2154 3.054655 TCAAGGTAGAGCGGCCTTTATTT 60.055 43.478 0.00 0.00 42.68 1.40
2036 2155 2.504175 TCAAGGTAGAGCGGCCTTTATT 59.496 45.455 0.00 0.00 42.68 1.40
2037 2156 2.116238 TCAAGGTAGAGCGGCCTTTAT 58.884 47.619 0.00 0.00 42.68 1.40
2038 2157 1.563924 TCAAGGTAGAGCGGCCTTTA 58.436 50.000 0.00 0.00 42.68 1.85
2039 2158 0.690762 TTCAAGGTAGAGCGGCCTTT 59.309 50.000 0.00 0.00 42.68 3.11
2040 2159 0.912486 ATTCAAGGTAGAGCGGCCTT 59.088 50.000 0.00 0.00 45.17 4.35
2041 2160 0.179000 CATTCAAGGTAGAGCGGCCT 59.821 55.000 0.00 0.00 36.51 5.19
2042 2161 0.815615 CCATTCAAGGTAGAGCGGCC 60.816 60.000 0.00 0.00 0.00 6.13
2043 2162 0.178068 TCCATTCAAGGTAGAGCGGC 59.822 55.000 0.00 0.00 0.00 6.53
2044 2163 2.093447 AGTTCCATTCAAGGTAGAGCGG 60.093 50.000 0.00 0.00 0.00 5.52
2045 2164 2.932614 CAGTTCCATTCAAGGTAGAGCG 59.067 50.000 0.00 0.00 0.00 5.03
2051 2170 4.664688 AGGATTCAGTTCCATTCAAGGT 57.335 40.909 0.00 0.00 38.32 3.50
2061 2180 3.632145 ACCAACACACAAGGATTCAGTTC 59.368 43.478 0.00 0.00 0.00 3.01
2102 2221 4.319694 GCAGCATTTGTGATATATGTGCGA 60.320 41.667 0.00 0.00 36.32 5.10
2104 2223 3.910170 CGCAGCATTTGTGATATATGTGC 59.090 43.478 0.00 0.00 39.74 4.57
2106 2225 5.277974 GGAACGCAGCATTTGTGATATATGT 60.278 40.000 0.00 0.00 39.74 2.29
2107 2226 5.149273 GGAACGCAGCATTTGTGATATATG 58.851 41.667 0.00 0.00 39.74 1.78
2108 2227 4.821260 TGGAACGCAGCATTTGTGATATAT 59.179 37.500 0.00 0.00 39.74 0.86
2109 2228 4.035091 GTGGAACGCAGCATTTGTGATATA 59.965 41.667 0.00 0.00 39.74 0.86
2110 2229 3.016031 TGGAACGCAGCATTTGTGATAT 58.984 40.909 0.00 0.00 39.74 1.63
2111 2230 2.161410 GTGGAACGCAGCATTTGTGATA 59.839 45.455 0.00 0.00 39.74 2.15
2115 2234 1.890876 TAGTGGAACGCAGCATTTGT 58.109 45.000 0.00 0.00 45.86 2.83
2123 2242 4.746535 TTCTATGGAATAGTGGAACGCA 57.253 40.909 0.00 0.00 46.98 5.24
2125 2244 6.480320 CCTTCTTTCTATGGAATAGTGGAACG 59.520 42.308 0.00 0.00 46.98 3.95
2145 2264 7.944729 ACATAATGCACAATTACTTCCTTCT 57.055 32.000 0.00 0.00 33.53 2.85
2146 2265 9.669353 CATACATAATGCACAATTACTTCCTTC 57.331 33.333 0.00 0.00 33.53 3.46
2164 2283 9.748708 GGAGCAGAATTAAATTTGCATACATAA 57.251 29.630 8.58 0.00 38.97 1.90
2173 2292 9.894783 CAGATATGAGGAGCAGAATTAAATTTG 57.105 33.333 0.00 0.00 0.00 2.32
2189 2308 1.880271 CAGTGCCTGCAGATATGAGG 58.120 55.000 17.39 0.00 0.00 3.86
2204 2323 6.484308 TCATATGGTTCATACATTCAGCAGTG 59.516 38.462 2.13 0.00 0.00 3.66
2230 2349 0.108520 GCAGCAATCAACCATGGTGG 60.109 55.000 20.60 17.03 43.40 4.61
2231 2350 0.457166 CGCAGCAATCAACCATGGTG 60.457 55.000 20.60 12.88 45.35 4.17
2258 2377 0.478072 AATTGGCACTGACAGTCCCA 59.522 50.000 14.59 14.59 33.33 4.37
2272 2391 5.395682 TGAGCCTGAAAAGATTCAATTGG 57.604 39.130 5.42 0.00 44.64 3.16
2281 2400 3.214328 GTGACCTTTGAGCCTGAAAAGA 58.786 45.455 0.00 0.00 35.79 2.52
2294 2413 3.760684 GAGAATCCAGCATTGTGACCTTT 59.239 43.478 0.00 0.00 0.00 3.11
2300 2419 5.675575 GCAACTAAGAGAATCCAGCATTGTG 60.676 44.000 0.00 0.00 33.66 3.33
2301 2420 4.397417 GCAACTAAGAGAATCCAGCATTGT 59.603 41.667 0.00 0.00 33.66 2.71
2302 2421 4.201990 GGCAACTAAGAGAATCCAGCATTG 60.202 45.833 0.00 0.00 33.66 2.82
2333 2455 9.487790 GGGACAGAAAATTCATCAACAAAATAA 57.512 29.630 0.00 0.00 0.00 1.40
2386 2508 9.195411 GCACATGTTTCTTATCTGATTTTTCAA 57.805 29.630 0.00 0.00 0.00 2.69
2388 2510 8.857216 CAGCACATGTTTCTTATCTGATTTTTC 58.143 33.333 0.00 0.00 0.00 2.29
2411 2533 3.308438 AGAAACCAAATGCATGTCAGC 57.692 42.857 0.00 0.00 0.00 4.26
2416 2538 6.925165 ACTTCTAACAAGAAACCAAATGCATG 59.075 34.615 0.00 0.00 0.00 4.06
2422 2544 9.280174 CCATAGTACTTCTAACAAGAAACCAAA 57.720 33.333 0.00 0.00 31.94 3.28
2423 2545 8.434392 ACCATAGTACTTCTAACAAGAAACCAA 58.566 33.333 0.00 0.00 31.94 3.67
2424 2546 7.876068 CACCATAGTACTTCTAACAAGAAACCA 59.124 37.037 0.00 0.00 31.94 3.67
2425 2547 7.148457 GCACCATAGTACTTCTAACAAGAAACC 60.148 40.741 0.00 0.00 31.94 3.27
2426 2548 7.386848 TGCACCATAGTACTTCTAACAAGAAAC 59.613 37.037 0.00 0.00 31.94 2.78
2427 2549 7.386848 GTGCACCATAGTACTTCTAACAAGAAA 59.613 37.037 5.22 0.00 31.94 2.52
2428 2550 6.872020 GTGCACCATAGTACTTCTAACAAGAA 59.128 38.462 5.22 0.00 31.94 2.52
2429 2551 6.210784 AGTGCACCATAGTACTTCTAACAAGA 59.789 38.462 14.63 0.00 29.80 3.02
2430 2552 6.311445 CAGTGCACCATAGTACTTCTAACAAG 59.689 42.308 14.63 0.00 31.85 3.16
2431 2553 6.163476 CAGTGCACCATAGTACTTCTAACAA 58.837 40.000 14.63 0.00 31.85 2.83
2432 2554 5.720202 CAGTGCACCATAGTACTTCTAACA 58.280 41.667 14.63 0.00 31.85 2.41
2433 2555 4.567159 GCAGTGCACCATAGTACTTCTAAC 59.433 45.833 14.63 0.00 31.85 2.34
2434 2556 4.382685 GGCAGTGCACCATAGTACTTCTAA 60.383 45.833 18.61 0.00 31.85 2.10
2435 2557 3.132289 GGCAGTGCACCATAGTACTTCTA 59.868 47.826 18.61 0.00 31.85 2.10
2436 2558 2.093447 GGCAGTGCACCATAGTACTTCT 60.093 50.000 18.61 0.00 31.85 2.85
2437 2559 2.280628 GGCAGTGCACCATAGTACTTC 58.719 52.381 18.61 0.00 31.85 3.01
2438 2560 1.065418 GGGCAGTGCACCATAGTACTT 60.065 52.381 18.61 0.00 31.85 2.24
2439 2561 0.541863 GGGCAGTGCACCATAGTACT 59.458 55.000 18.61 0.00 34.66 2.73
2440 2562 0.541863 AGGGCAGTGCACCATAGTAC 59.458 55.000 15.35 0.00 28.43 2.73
2441 2563 1.209504 GAAGGGCAGTGCACCATAGTA 59.790 52.381 15.35 0.00 28.43 1.82
2442 2564 0.035056 GAAGGGCAGTGCACCATAGT 60.035 55.000 15.35 0.00 28.43 2.12
2443 2565 0.749454 GGAAGGGCAGTGCACCATAG 60.749 60.000 15.35 2.32 28.43 2.23
2444 2566 1.207488 AGGAAGGGCAGTGCACCATA 61.207 55.000 15.35 0.00 28.43 2.74
2445 2567 2.036256 GGAAGGGCAGTGCACCAT 59.964 61.111 15.35 6.92 28.43 3.55
2446 2568 2.766925 AAGGAAGGGCAGTGCACCA 61.767 57.895 15.35 0.00 28.43 4.17
2447 2569 2.116125 AAGGAAGGGCAGTGCACC 59.884 61.111 15.35 14.02 28.43 5.01
2448 2570 2.270986 CCAAGGAAGGGCAGTGCAC 61.271 63.158 18.61 14.75 0.00 4.57
2449 2571 2.115910 CCAAGGAAGGGCAGTGCA 59.884 61.111 18.61 0.00 0.00 4.57
2456 2578 0.622665 ATCACAGAGCCAAGGAAGGG 59.377 55.000 0.00 0.00 0.00 3.95
2457 2579 1.558756 AGATCACAGAGCCAAGGAAGG 59.441 52.381 0.00 0.00 0.00 3.46
2458 2580 2.630158 CAGATCACAGAGCCAAGGAAG 58.370 52.381 0.00 0.00 0.00 3.46
2459 2581 1.339438 GCAGATCACAGAGCCAAGGAA 60.339 52.381 0.00 0.00 0.00 3.36
2460 2582 0.251354 GCAGATCACAGAGCCAAGGA 59.749 55.000 0.00 0.00 0.00 3.36
2461 2583 0.252479 AGCAGATCACAGAGCCAAGG 59.748 55.000 0.00 0.00 0.00 3.61
2462 2584 1.738350 CAAGCAGATCACAGAGCCAAG 59.262 52.381 0.00 0.00 0.00 3.61
2463 2585 1.072806 ACAAGCAGATCACAGAGCCAA 59.927 47.619 0.00 0.00 0.00 4.52
2464 2586 0.689055 ACAAGCAGATCACAGAGCCA 59.311 50.000 0.00 0.00 0.00 4.75
2465 2587 1.085091 CACAAGCAGATCACAGAGCC 58.915 55.000 0.00 0.00 0.00 4.70
2466 2588 1.805869 ACACAAGCAGATCACAGAGC 58.194 50.000 0.00 0.00 0.00 4.09
2467 2589 3.059120 CACAACACAAGCAGATCACAGAG 60.059 47.826 0.00 0.00 0.00 3.35
2468 2590 2.874086 CACAACACAAGCAGATCACAGA 59.126 45.455 0.00 0.00 0.00 3.41
2469 2591 2.031420 CCACAACACAAGCAGATCACAG 60.031 50.000 0.00 0.00 0.00 3.66
2470 2592 1.948834 CCACAACACAAGCAGATCACA 59.051 47.619 0.00 0.00 0.00 3.58
2471 2593 1.335324 GCCACAACACAAGCAGATCAC 60.335 52.381 0.00 0.00 0.00 3.06
2472 2594 0.953727 GCCACAACACAAGCAGATCA 59.046 50.000 0.00 0.00 0.00 2.92
2473 2595 0.953727 TGCCACAACACAAGCAGATC 59.046 50.000 0.00 0.00 0.00 2.75
2474 2596 1.401761 TTGCCACAACACAAGCAGAT 58.598 45.000 0.00 0.00 36.44 2.90
2475 2597 1.180907 TTTGCCACAACACAAGCAGA 58.819 45.000 0.00 0.00 36.44 4.26
2476 2598 1.928503 CTTTTGCCACAACACAAGCAG 59.071 47.619 0.00 0.00 36.44 4.24
2477 2599 1.547820 TCTTTTGCCACAACACAAGCA 59.452 42.857 0.00 0.00 29.36 3.91
2478 2600 2.292103 TCTTTTGCCACAACACAAGC 57.708 45.000 0.00 0.00 29.36 4.01
2479 2601 4.431809 TGAATCTTTTGCCACAACACAAG 58.568 39.130 0.00 0.00 0.00 3.16
2480 2602 4.462508 TGAATCTTTTGCCACAACACAA 57.537 36.364 0.00 0.00 0.00 3.33
2481 2603 4.462508 TTGAATCTTTTGCCACAACACA 57.537 36.364 0.00 0.00 0.00 3.72
2482 2604 5.989551 AATTGAATCTTTTGCCACAACAC 57.010 34.783 0.00 0.00 0.00 3.32
2483 2605 6.183360 CCAAAATTGAATCTTTTGCCACAACA 60.183 34.615 3.13 0.00 40.57 3.33
2484 2606 6.183360 ACCAAAATTGAATCTTTTGCCACAAC 60.183 34.615 3.13 0.00 40.57 3.32
2485 2607 5.884792 ACCAAAATTGAATCTTTTGCCACAA 59.115 32.000 3.13 0.00 40.57 3.33
2486 2608 5.296283 CACCAAAATTGAATCTTTTGCCACA 59.704 36.000 3.13 0.00 40.57 4.17
2487 2609 5.296531 ACACCAAAATTGAATCTTTTGCCAC 59.703 36.000 3.13 0.00 40.57 5.01
2488 2610 5.435291 ACACCAAAATTGAATCTTTTGCCA 58.565 33.333 3.13 0.00 40.57 4.92
2489 2611 7.489574 TTACACCAAAATTGAATCTTTTGCC 57.510 32.000 3.13 0.00 40.57 4.52
2490 2612 8.558700 ACATTACACCAAAATTGAATCTTTTGC 58.441 29.630 3.13 0.00 40.57 3.68
2491 2613 9.866936 CACATTACACCAAAATTGAATCTTTTG 57.133 29.630 0.00 1.99 41.23 2.44
2492 2614 9.054922 CCACATTACACCAAAATTGAATCTTTT 57.945 29.630 0.00 0.00 0.00 2.27
2493 2615 8.210265 ACCACATTACACCAAAATTGAATCTTT 58.790 29.630 0.00 0.00 0.00 2.52
2494 2616 7.656948 CACCACATTACACCAAAATTGAATCTT 59.343 33.333 0.00 0.00 0.00 2.40
2495 2617 7.153985 CACCACATTACACCAAAATTGAATCT 58.846 34.615 0.00 0.00 0.00 2.40
2496 2618 6.368516 CCACCACATTACACCAAAATTGAATC 59.631 38.462 0.00 0.00 0.00 2.52
2497 2619 6.229733 CCACCACATTACACCAAAATTGAAT 58.770 36.000 0.00 0.00 0.00 2.57
2498 2620 5.605534 CCACCACATTACACCAAAATTGAA 58.394 37.500 0.00 0.00 0.00 2.69
2499 2621 4.502259 GCCACCACATTACACCAAAATTGA 60.502 41.667 0.00 0.00 0.00 2.57
2500 2622 3.745458 GCCACCACATTACACCAAAATTG 59.255 43.478 0.00 0.00 0.00 2.32
2501 2623 3.244387 GGCCACCACATTACACCAAAATT 60.244 43.478 0.00 0.00 0.00 1.82
2502 2624 2.301583 GGCCACCACATTACACCAAAAT 59.698 45.455 0.00 0.00 0.00 1.82
2503 2625 1.689273 GGCCACCACATTACACCAAAA 59.311 47.619 0.00 0.00 0.00 2.44
2504 2626 1.333177 GGCCACCACATTACACCAAA 58.667 50.000 0.00 0.00 0.00 3.28
2505 2627 0.186143 TGGCCACCACATTACACCAA 59.814 50.000 0.00 0.00 0.00 3.67
2506 2628 0.251121 CTGGCCACCACATTACACCA 60.251 55.000 0.00 0.00 0.00 4.17
2507 2629 0.251165 ACTGGCCACCACATTACACC 60.251 55.000 0.00 0.00 0.00 4.16
2508 2630 1.616159 AACTGGCCACCACATTACAC 58.384 50.000 0.00 0.00 0.00 2.90
2509 2631 3.150767 GTTAACTGGCCACCACATTACA 58.849 45.455 0.00 0.00 0.00 2.41
2510 2632 2.490509 GGTTAACTGGCCACCACATTAC 59.509 50.000 0.00 0.00 0.00 1.89
2511 2633 2.108425 TGGTTAACTGGCCACCACATTA 59.892 45.455 0.00 0.00 35.57 1.90
2512 2634 1.133325 TGGTTAACTGGCCACCACATT 60.133 47.619 0.00 0.00 35.57 2.71
2513 2635 0.480690 TGGTTAACTGGCCACCACAT 59.519 50.000 0.00 0.00 35.57 3.21
2514 2636 0.259065 TTGGTTAACTGGCCACCACA 59.741 50.000 11.42 1.64 40.41 4.17
2515 2637 0.671796 GTTGGTTAACTGGCCACCAC 59.328 55.000 11.42 4.29 40.41 4.16
2516 2638 0.553819 AGTTGGTTAACTGGCCACCA 59.446 50.000 0.00 4.15 45.17 4.17
2517 2639 2.156917 GTAGTTGGTTAACTGGCCACC 58.843 52.381 0.00 0.61 46.28 4.61
2518 2640 2.812011 CTGTAGTTGGTTAACTGGCCAC 59.188 50.000 0.00 0.00 46.28 5.01
2519 2641 2.706723 TCTGTAGTTGGTTAACTGGCCA 59.293 45.455 4.71 4.71 46.28 5.36
2520 2642 3.412237 TCTGTAGTTGGTTAACTGGCC 57.588 47.619 5.42 0.00 46.28 5.36
2521 2643 5.240844 ACAAATCTGTAGTTGGTTAACTGGC 59.759 40.000 5.42 0.00 46.28 4.85
2522 2644 6.877611 ACAAATCTGTAGTTGGTTAACTGG 57.122 37.500 5.42 0.00 46.28 4.00
2523 2645 8.280497 GTGTACAAATCTGTAGTTGGTTAACTG 58.720 37.037 5.42 0.00 46.28 3.16
2525 2647 8.280497 CAGTGTACAAATCTGTAGTTGGTTAAC 58.720 37.037 0.00 0.00 38.73 2.01
2526 2648 7.442969 CCAGTGTACAAATCTGTAGTTGGTTAA 59.557 37.037 0.00 0.00 38.73 2.01
2527 2649 6.932400 CCAGTGTACAAATCTGTAGTTGGTTA 59.068 38.462 0.00 0.00 38.73 2.85
2528 2650 5.763204 CCAGTGTACAAATCTGTAGTTGGTT 59.237 40.000 0.00 0.00 38.73 3.67
2529 2651 5.071250 TCCAGTGTACAAATCTGTAGTTGGT 59.929 40.000 0.00 0.00 38.73 3.67
2530 2652 5.547465 TCCAGTGTACAAATCTGTAGTTGG 58.453 41.667 0.00 0.00 38.73 3.77
2531 2653 7.672983 AATCCAGTGTACAAATCTGTAGTTG 57.327 36.000 0.00 0.00 38.73 3.16
2532 2654 9.959721 AATAATCCAGTGTACAAATCTGTAGTT 57.040 29.630 0.00 0.00 38.73 2.24
2536 2658 8.840321 GCATAATAATCCAGTGTACAAATCTGT 58.160 33.333 0.00 0.00 39.75 3.41
2537 2659 8.839343 TGCATAATAATCCAGTGTACAAATCTG 58.161 33.333 0.00 0.53 0.00 2.90
2538 2660 8.978874 TGCATAATAATCCAGTGTACAAATCT 57.021 30.769 0.00 0.00 0.00 2.40
2539 2661 8.840321 ACTGCATAATAATCCAGTGTACAAATC 58.160 33.333 0.00 0.00 37.18 2.17
2540 2662 8.752005 ACTGCATAATAATCCAGTGTACAAAT 57.248 30.769 0.00 0.00 37.18 2.32
2541 2663 8.574251 AACTGCATAATAATCCAGTGTACAAA 57.426 30.769 0.00 0.00 38.45 2.83
2542 2664 9.845740 ATAACTGCATAATAATCCAGTGTACAA 57.154 29.630 0.00 0.00 38.45 2.41
2556 2678 9.801873 GTTGACCATGTTTTATAACTGCATAAT 57.198 29.630 0.00 0.00 35.24 1.28
2557 2679 8.247562 GGTTGACCATGTTTTATAACTGCATAA 58.752 33.333 0.00 0.00 34.03 1.90
2558 2680 7.394641 TGGTTGACCATGTTTTATAACTGCATA 59.605 33.333 0.00 0.00 42.01 3.14
2559 2681 6.210385 TGGTTGACCATGTTTTATAACTGCAT 59.790 34.615 0.00 0.00 42.01 3.96
2560 2682 5.536538 TGGTTGACCATGTTTTATAACTGCA 59.463 36.000 0.00 0.00 42.01 4.41
2561 2683 6.019779 TGGTTGACCATGTTTTATAACTGC 57.980 37.500 0.00 0.00 42.01 4.40
2562 2684 8.924691 CAATTGGTTGACCATGTTTTATAACTG 58.075 33.333 3.28 0.00 46.97 3.16
2563 2685 8.646900 ACAATTGGTTGACCATGTTTTATAACT 58.353 29.630 10.83 0.00 46.97 2.24
2564 2686 8.825667 ACAATTGGTTGACCATGTTTTATAAC 57.174 30.769 10.83 0.00 46.97 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.