Multiple sequence alignment - TraesCS1A01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G380400 chr1A 100.000 2610 0 0 1 2610 551664107 551661498 0.000000e+00 4820.0
1 TraesCS1A01G380400 chr3B 98.605 1936 16 2 686 2610 558382282 558380347 0.000000e+00 3415.0
2 TraesCS1A01G380400 chr1B 98.593 1919 15 2 704 2610 143619871 143617953 0.000000e+00 3384.0
3 TraesCS1A01G380400 chr1B 89.286 112 11 1 349 459 640595085 640594974 3.500000e-29 139.0
4 TraesCS1A01G380400 chr1B 80.702 114 21 1 751 864 84415227 84415115 1.290000e-13 87.9
5 TraesCS1A01G380400 chr5A 95.382 1191 44 2 704 1884 113272217 113271028 0.000000e+00 1884.0
6 TraesCS1A01G380400 chr5A 98.364 856 13 1 1755 2609 113271028 113270173 0.000000e+00 1502.0
7 TraesCS1A01G380400 chr7B 90.787 1335 91 18 715 2037 123294072 123292758 0.000000e+00 1755.0
8 TraesCS1A01G380400 chr6A 85.655 718 81 10 1078 1793 607857954 607858651 0.000000e+00 736.0
9 TraesCS1A01G380400 chr6A 89.217 575 49 7 2039 2607 607868705 607869272 0.000000e+00 706.0
10 TraesCS1A01G380400 chr6A 89.397 481 41 7 2040 2517 76277583 76277110 4.810000e-167 597.0
11 TraesCS1A01G380400 chr6A 79.875 800 92 41 1273 2037 578199606 578200371 2.980000e-144 521.0
12 TraesCS1A01G380400 chr6A 91.597 238 19 1 1305 1542 582476847 582476611 6.960000e-86 327.0
13 TraesCS1A01G380400 chr4A 89.242 567 54 5 978 1539 374656589 374657153 0.000000e+00 702.0
14 TraesCS1A01G380400 chr4A 89.397 481 42 6 2040 2517 420006086 420005612 4.810000e-167 597.0
15 TraesCS1A01G380400 chr4A 88.773 481 45 6 2040 2517 405014057 405013583 4.840000e-162 580.0
16 TraesCS1A01G380400 chr4A 88.150 481 48 6 2040 2517 289724070 289723596 4.880000e-157 564.0
17 TraesCS1A01G380400 chr7D 89.605 481 41 5 2040 2517 366758125 366758599 1.030000e-168 603.0
18 TraesCS1A01G380400 chr7D 92.642 299 19 3 1727 2025 366756952 366757247 6.680000e-116 427.0
19 TraesCS1A01G380400 chr7D 97.436 39 1 0 341 379 545650065 545650027 1.680000e-07 67.6
20 TraesCS1A01G380400 chrUn 80.050 797 96 37 1273 2037 74620589 74621354 1.380000e-147 532.0
21 TraesCS1A01G380400 chrUn 79.875 800 92 41 1273 2037 74640645 74641410 2.980000e-144 521.0
22 TraesCS1A01G380400 chrUn 79.875 800 92 41 1273 2037 373630419 373631184 2.980000e-144 521.0
23 TraesCS1A01G380400 chrUn 79.750 800 93 41 1273 2037 333947668 333948433 1.380000e-142 516.0
24 TraesCS1A01G380400 chrUn 92.096 291 18 4 1727 2014 94075748 94076036 3.130000e-109 405.0
25 TraesCS1A01G380400 chr7A 89.474 342 33 3 978 1318 299435838 299436177 1.860000e-116 429.0
26 TraesCS1A01G380400 chr7A 91.915 235 18 1 1305 1539 722269126 722269359 6.960000e-86 327.0
27 TraesCS1A01G380400 chr7A 82.456 114 17 3 348 459 675414584 675414696 2.140000e-16 97.1
28 TraesCS1A01G380400 chr7A 79.775 89 17 1 142 229 634324806 634324718 2.170000e-06 63.9
29 TraesCS1A01G380400 chr3A 90.336 238 22 1 1305 1542 174384649 174384413 7.010000e-81 311.0
30 TraesCS1A01G380400 chr1D 92.571 175 10 2 1 175 460170144 460169973 5.580000e-62 248.0
31 TraesCS1A01G380400 chr6B 82.383 193 25 9 678 866 247039231 247039044 2.690000e-35 159.0
32 TraesCS1A01G380400 chr2B 82.209 163 23 2 502 660 795034215 795034375 4.530000e-28 135.0
33 TraesCS1A01G380400 chr3D 83.784 111 17 1 349 459 578404269 578404160 1.280000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G380400 chr1A 551661498 551664107 2609 True 4820 4820 100.0000 1 2610 1 chr1A.!!$R1 2609
1 TraesCS1A01G380400 chr3B 558380347 558382282 1935 True 3415 3415 98.6050 686 2610 1 chr3B.!!$R1 1924
2 TraesCS1A01G380400 chr1B 143617953 143619871 1918 True 3384 3384 98.5930 704 2610 1 chr1B.!!$R2 1906
3 TraesCS1A01G380400 chr5A 113270173 113272217 2044 True 1693 1884 96.8730 704 2609 2 chr5A.!!$R1 1905
4 TraesCS1A01G380400 chr7B 123292758 123294072 1314 True 1755 1755 90.7870 715 2037 1 chr7B.!!$R1 1322
5 TraesCS1A01G380400 chr6A 607857954 607858651 697 False 736 736 85.6550 1078 1793 1 chr6A.!!$F2 715
6 TraesCS1A01G380400 chr6A 607868705 607869272 567 False 706 706 89.2170 2039 2607 1 chr6A.!!$F3 568
7 TraesCS1A01G380400 chr6A 578199606 578200371 765 False 521 521 79.8750 1273 2037 1 chr6A.!!$F1 764
8 TraesCS1A01G380400 chr4A 374656589 374657153 564 False 702 702 89.2420 978 1539 1 chr4A.!!$F1 561
9 TraesCS1A01G380400 chr7D 366756952 366758599 1647 False 515 603 91.1235 1727 2517 2 chr7D.!!$F1 790
10 TraesCS1A01G380400 chrUn 74620589 74621354 765 False 532 532 80.0500 1273 2037 1 chrUn.!!$F1 764
11 TraesCS1A01G380400 chrUn 74640645 74641410 765 False 521 521 79.8750 1273 2037 1 chrUn.!!$F2 764
12 TraesCS1A01G380400 chrUn 373630419 373631184 765 False 521 521 79.8750 1273 2037 1 chrUn.!!$F5 764
13 TraesCS1A01G380400 chrUn 333947668 333948433 765 False 516 516 79.7500 1273 2037 1 chrUn.!!$F4 764

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.034767 ATGGACACAGCAGGACATGG 60.035 55.0 0.0 0.0 0.0 3.66 F
170 171 0.035820 GGACATGGGGACGTAGCAAA 60.036 55.0 0.0 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1071 1.562672 ATGCCTTGTTAGTCCCGCCT 61.563 55.000 0.00 0.00 0.00 5.52 R
2421 3476 7.703621 CCTTGTCAAATACTGAATTAATGCAGG 59.296 37.037 24.53 8.91 35.22 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.706301 CTCGTCTGCATGTTGAGCG 59.294 57.895 0.00 1.16 33.85 5.03
19 20 2.097160 CGTCTGCATGTTGAGCGC 59.903 61.111 0.00 0.00 33.85 5.92
20 21 2.482374 GTCTGCATGTTGAGCGCC 59.518 61.111 2.29 0.00 33.85 6.53
21 22 3.120385 TCTGCATGTTGAGCGCCG 61.120 61.111 2.29 0.00 33.85 6.46
22 23 3.425713 CTGCATGTTGAGCGCCGT 61.426 61.111 2.29 0.00 33.85 5.68
23 24 3.656243 CTGCATGTTGAGCGCCGTG 62.656 63.158 2.29 0.77 33.85 4.94
24 25 4.465512 GCATGTTGAGCGCCGTGG 62.466 66.667 2.29 0.00 0.00 4.94
25 26 4.465512 CATGTTGAGCGCCGTGGC 62.466 66.667 2.29 0.00 37.85 5.01
47 48 3.706373 CCACTGGCCTAGCGTGGT 61.706 66.667 19.41 0.87 42.45 4.16
48 49 2.434884 CACTGGCCTAGCGTGGTG 60.435 66.667 3.32 0.00 0.00 4.17
49 50 3.706373 ACTGGCCTAGCGTGGTGG 61.706 66.667 3.32 0.00 0.00 4.61
50 51 4.473520 CTGGCCTAGCGTGGTGGG 62.474 72.222 3.32 0.00 0.00 4.61
52 53 3.078836 GGCCTAGCGTGGTGGGTA 61.079 66.667 0.00 0.00 0.00 3.69
53 54 2.662070 GGCCTAGCGTGGTGGGTAA 61.662 63.158 0.00 0.00 0.00 2.85
54 55 1.297364 GCCTAGCGTGGTGGGTAAA 59.703 57.895 3.38 0.00 0.00 2.01
55 56 0.321830 GCCTAGCGTGGTGGGTAAAA 60.322 55.000 3.38 0.00 0.00 1.52
56 57 1.883209 GCCTAGCGTGGTGGGTAAAAA 60.883 52.381 3.38 0.00 0.00 1.94
74 75 4.649267 AAAAAGGAGGAGAGAGGGAAAG 57.351 45.455 0.00 0.00 0.00 2.62
75 76 3.569135 AAAGGAGGAGAGAGGGAAAGA 57.431 47.619 0.00 0.00 0.00 2.52
76 77 2.846665 AGGAGGAGAGAGGGAAAGAG 57.153 55.000 0.00 0.00 0.00 2.85
77 78 2.293246 AGGAGGAGAGAGGGAAAGAGA 58.707 52.381 0.00 0.00 0.00 3.10
78 79 2.244769 AGGAGGAGAGAGGGAAAGAGAG 59.755 54.545 0.00 0.00 0.00 3.20
79 80 2.031870 GAGGAGAGAGGGAAAGAGAGC 58.968 57.143 0.00 0.00 0.00 4.09
80 81 0.744281 GGAGAGAGGGAAAGAGAGCG 59.256 60.000 0.00 0.00 0.00 5.03
81 82 0.744281 GAGAGAGGGAAAGAGAGCGG 59.256 60.000 0.00 0.00 0.00 5.52
82 83 0.040499 AGAGAGGGAAAGAGAGCGGT 59.960 55.000 0.00 0.00 0.00 5.68
83 84 0.174617 GAGAGGGAAAGAGAGCGGTG 59.825 60.000 0.00 0.00 0.00 4.94
84 85 0.543174 AGAGGGAAAGAGAGCGGTGT 60.543 55.000 0.00 0.00 0.00 4.16
85 86 0.390472 GAGGGAAAGAGAGCGGTGTG 60.390 60.000 0.00 0.00 0.00 3.82
86 87 1.376037 GGGAAAGAGAGCGGTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
87 88 1.371558 GGAAAGAGAGCGGTGTGGT 59.628 57.895 0.00 0.00 0.00 4.16
88 89 0.951040 GGAAAGAGAGCGGTGTGGTG 60.951 60.000 0.00 0.00 0.00 4.17
89 90 0.951040 GAAAGAGAGCGGTGTGGTGG 60.951 60.000 0.00 0.00 0.00 4.61
90 91 2.397413 AAAGAGAGCGGTGTGGTGGG 62.397 60.000 0.00 0.00 0.00 4.61
91 92 3.626924 GAGAGCGGTGTGGTGGGT 61.627 66.667 0.00 0.00 0.00 4.51
92 93 3.883744 GAGAGCGGTGTGGTGGGTG 62.884 68.421 0.00 0.00 0.00 4.61
96 97 4.947147 CGGTGTGGTGGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
97 98 4.596585 GGTGTGGTGGGTGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
98 99 3.816090 GTGTGGTGGGTGGTGGGT 61.816 66.667 0.00 0.00 0.00 4.51
99 100 3.494254 TGTGGTGGGTGGTGGGTC 61.494 66.667 0.00 0.00 0.00 4.46
100 101 4.280019 GTGGTGGGTGGTGGGTCC 62.280 72.222 0.00 0.00 0.00 4.46
101 102 4.845307 TGGTGGGTGGTGGGTCCA 62.845 66.667 0.00 0.00 45.01 4.02
109 110 3.028916 TGGTGGGTCCATTTGTTCG 57.971 52.632 0.00 0.00 41.93 3.95
110 111 0.538516 TGGTGGGTCCATTTGTTCGG 60.539 55.000 0.00 0.00 41.93 4.30
111 112 0.250989 GGTGGGTCCATTTGTTCGGA 60.251 55.000 0.00 0.00 35.97 4.55
112 113 1.615919 GGTGGGTCCATTTGTTCGGAT 60.616 52.381 0.00 0.00 32.83 4.18
113 114 1.472480 GTGGGTCCATTTGTTCGGATG 59.528 52.381 0.00 0.00 32.83 3.51
114 115 1.352687 TGGGTCCATTTGTTCGGATGA 59.647 47.619 0.00 0.00 32.83 2.92
115 116 2.224892 TGGGTCCATTTGTTCGGATGAA 60.225 45.455 0.00 0.00 32.83 2.57
116 117 2.823154 GGGTCCATTTGTTCGGATGAAA 59.177 45.455 0.00 0.00 35.46 2.69
117 118 3.119495 GGGTCCATTTGTTCGGATGAAAG 60.119 47.826 0.00 0.00 35.46 2.62
118 119 3.756434 GGTCCATTTGTTCGGATGAAAGA 59.244 43.478 0.00 0.00 35.46 2.52
119 120 4.379499 GGTCCATTTGTTCGGATGAAAGAC 60.379 45.833 0.00 0.00 35.46 3.01
120 121 3.435327 TCCATTTGTTCGGATGAAAGACG 59.565 43.478 0.00 0.00 35.46 4.18
121 122 3.426159 CCATTTGTTCGGATGAAAGACGG 60.426 47.826 0.00 0.00 35.46 4.79
122 123 2.823924 TTGTTCGGATGAAAGACGGA 57.176 45.000 0.00 0.00 35.46 4.69
123 124 3.328382 TTGTTCGGATGAAAGACGGAT 57.672 42.857 0.00 0.00 35.46 4.18
124 125 2.888594 TGTTCGGATGAAAGACGGATC 58.111 47.619 0.00 0.00 35.46 3.36
125 126 2.232696 TGTTCGGATGAAAGACGGATCA 59.767 45.455 0.00 0.00 35.46 2.92
126 127 3.118775 TGTTCGGATGAAAGACGGATCAT 60.119 43.478 0.00 0.00 38.93 2.45
133 134 3.461061 TGAAAGACGGATCATCATCTGC 58.539 45.455 0.00 0.00 38.84 4.26
134 135 3.118665 TGAAAGACGGATCATCATCTGCA 60.119 43.478 0.00 0.00 38.84 4.41
135 136 3.766068 AAGACGGATCATCATCTGCAT 57.234 42.857 0.00 0.00 38.84 3.96
136 137 3.041508 AGACGGATCATCATCTGCATG 57.958 47.619 0.00 0.00 38.84 4.06
137 138 1.463831 GACGGATCATCATCTGCATGC 59.536 52.381 11.82 11.82 38.84 4.06
138 139 1.202722 ACGGATCATCATCTGCATGCA 60.203 47.619 21.29 21.29 38.84 3.96
139 140 1.877443 CGGATCATCATCTGCATGCAA 59.123 47.619 22.88 13.05 0.00 4.08
140 141 2.488153 CGGATCATCATCTGCATGCAAT 59.512 45.455 22.88 14.74 0.00 3.56
142 143 3.367395 GGATCATCATCTGCATGCAATGG 60.367 47.826 27.51 18.67 46.86 3.16
143 144 2.938838 TCATCATCTGCATGCAATGGA 58.061 42.857 27.51 22.01 46.86 3.41
144 145 2.621526 TCATCATCTGCATGCAATGGAC 59.378 45.455 27.51 1.29 46.86 4.02
145 146 2.131776 TCATCTGCATGCAATGGACA 57.868 45.000 27.51 15.30 46.86 4.02
146 147 1.746787 TCATCTGCATGCAATGGACAC 59.253 47.619 27.51 0.06 46.86 3.67
147 148 1.474879 CATCTGCATGCAATGGACACA 59.525 47.619 22.88 0.00 46.86 3.72
148 149 1.170442 TCTGCATGCAATGGACACAG 58.830 50.000 22.88 6.65 46.86 3.66
149 150 0.457853 CTGCATGCAATGGACACAGC 60.458 55.000 22.88 0.00 46.86 4.40
150 151 1.179814 TGCATGCAATGGACACAGCA 61.180 50.000 20.30 3.49 46.86 4.41
151 152 0.457853 GCATGCAATGGACACAGCAG 60.458 55.000 14.21 0.00 46.86 4.24
152 153 0.172578 CATGCAATGGACACAGCAGG 59.827 55.000 0.00 3.19 41.79 4.85
153 154 0.038599 ATGCAATGGACACAGCAGGA 59.961 50.000 0.00 0.00 40.71 3.86
154 155 0.890542 TGCAATGGACACAGCAGGAC 60.891 55.000 0.00 0.00 32.48 3.85
155 156 0.890542 GCAATGGACACAGCAGGACA 60.891 55.000 0.00 0.00 0.00 4.02
156 157 1.830279 CAATGGACACAGCAGGACAT 58.170 50.000 0.00 0.00 0.00 3.06
157 158 1.471287 CAATGGACACAGCAGGACATG 59.529 52.381 0.00 0.00 0.00 3.21
158 159 0.034767 ATGGACACAGCAGGACATGG 60.035 55.000 0.00 0.00 0.00 3.66
159 160 1.377725 GGACACAGCAGGACATGGG 60.378 63.158 0.00 0.00 0.00 4.00
160 161 1.377725 GACACAGCAGGACATGGGG 60.378 63.158 0.00 0.00 0.00 4.96
161 162 1.841302 GACACAGCAGGACATGGGGA 61.841 60.000 0.00 0.00 0.00 4.81
162 163 1.377725 CACAGCAGGACATGGGGAC 60.378 63.158 0.00 0.00 0.00 4.46
163 164 2.124983 CAGCAGGACATGGGGACG 60.125 66.667 0.00 0.00 0.00 4.79
164 165 2.607750 AGCAGGACATGGGGACGT 60.608 61.111 0.00 0.00 0.00 4.34
165 166 1.305802 AGCAGGACATGGGGACGTA 60.306 57.895 0.00 0.00 0.00 3.57
166 167 1.144057 GCAGGACATGGGGACGTAG 59.856 63.158 0.00 0.00 0.00 3.51
167 168 1.144057 CAGGACATGGGGACGTAGC 59.856 63.158 0.00 0.00 0.00 3.58
168 169 1.305802 AGGACATGGGGACGTAGCA 60.306 57.895 0.00 0.00 0.00 3.49
169 170 0.907704 AGGACATGGGGACGTAGCAA 60.908 55.000 0.00 0.00 0.00 3.91
170 171 0.035820 GGACATGGGGACGTAGCAAA 60.036 55.000 0.00 0.00 0.00 3.68
171 172 1.084289 GACATGGGGACGTAGCAAAC 58.916 55.000 0.00 0.00 0.00 2.93
179 180 3.941035 CGTAGCAAACGTCCGGTT 58.059 55.556 0.00 0.00 46.72 4.44
186 187 2.396700 AAACGTCCGGTTTGTGTCC 58.603 52.632 0.00 0.00 46.81 4.02
187 188 0.392729 AAACGTCCGGTTTGTGTCCA 60.393 50.000 0.00 0.00 46.81 4.02
188 189 1.091197 AACGTCCGGTTTGTGTCCAC 61.091 55.000 0.00 0.00 34.41 4.02
189 190 1.227438 CGTCCGGTTTGTGTCCACT 60.227 57.895 0.00 0.00 0.00 4.00
190 191 0.812412 CGTCCGGTTTGTGTCCACTT 60.812 55.000 0.00 0.00 0.00 3.16
191 192 1.385528 GTCCGGTTTGTGTCCACTTT 58.614 50.000 0.00 0.00 0.00 2.66
192 193 1.064952 GTCCGGTTTGTGTCCACTTTG 59.935 52.381 0.00 0.00 0.00 2.77
193 194 0.383949 CCGGTTTGTGTCCACTTTGG 59.616 55.000 0.00 0.00 39.43 3.28
194 195 1.384525 CGGTTTGTGTCCACTTTGGA 58.615 50.000 0.00 0.00 45.98 3.53
204 205 2.593026 TCCACTTTGGACCCAAATCAC 58.407 47.619 13.94 0.00 42.67 3.06
205 206 1.269448 CCACTTTGGACCCAAATCACG 59.731 52.381 13.94 5.94 43.78 4.35
206 207 2.226330 CACTTTGGACCCAAATCACGA 58.774 47.619 13.94 0.00 43.78 4.35
207 208 2.031157 CACTTTGGACCCAAATCACGAC 60.031 50.000 13.94 0.00 43.78 4.34
208 209 1.539827 CTTTGGACCCAAATCACGACC 59.460 52.381 13.94 0.00 43.78 4.79
209 210 0.474614 TTGGACCCAAATCACGACCA 59.525 50.000 0.00 0.00 32.44 4.02
210 211 0.474614 TGGACCCAAATCACGACCAA 59.525 50.000 0.00 0.00 0.00 3.67
211 212 1.133761 TGGACCCAAATCACGACCAAA 60.134 47.619 0.00 0.00 0.00 3.28
212 213 2.167662 GGACCCAAATCACGACCAAAT 58.832 47.619 0.00 0.00 0.00 2.32
213 214 2.560981 GGACCCAAATCACGACCAAATT 59.439 45.455 0.00 0.00 0.00 1.82
214 215 3.006430 GGACCCAAATCACGACCAAATTT 59.994 43.478 0.00 0.00 0.00 1.82
215 216 3.987220 GACCCAAATCACGACCAAATTTG 59.013 43.478 11.40 11.40 39.16 2.32
216 217 3.639094 ACCCAAATCACGACCAAATTTGA 59.361 39.130 19.86 0.00 40.97 2.69
217 218 4.283212 ACCCAAATCACGACCAAATTTGAT 59.717 37.500 19.86 1.03 40.97 2.57
218 219 4.864247 CCCAAATCACGACCAAATTTGATC 59.136 41.667 19.86 11.35 40.97 2.92
219 220 4.558470 CCAAATCACGACCAAATTTGATCG 59.442 41.667 29.15 29.15 40.97 3.69
220 221 5.389778 CAAATCACGACCAAATTTGATCGA 58.610 37.500 35.54 18.59 40.97 3.59
221 222 4.864916 ATCACGACCAAATTTGATCGAG 57.135 40.909 35.54 28.68 37.97 4.04
222 223 3.920446 TCACGACCAAATTTGATCGAGA 58.080 40.909 35.54 30.26 37.97 4.04
223 224 3.926527 TCACGACCAAATTTGATCGAGAG 59.073 43.478 35.54 24.44 37.97 3.20
236 237 1.195115 TCGAGAGATGGGGTCAAAGG 58.805 55.000 0.00 0.00 33.31 3.11
237 238 0.179000 CGAGAGATGGGGTCAAAGGG 59.821 60.000 0.00 0.00 0.00 3.95
238 239 1.584724 GAGAGATGGGGTCAAAGGGA 58.415 55.000 0.00 0.00 0.00 4.20
239 240 1.210722 GAGAGATGGGGTCAAAGGGAC 59.789 57.143 0.00 0.00 46.20 4.46
240 241 1.203492 AGAGATGGGGTCAAAGGGACT 60.203 52.381 0.00 0.00 46.16 3.85
241 242 2.045885 AGAGATGGGGTCAAAGGGACTA 59.954 50.000 0.00 0.00 46.16 2.59
242 243 2.844348 GAGATGGGGTCAAAGGGACTAA 59.156 50.000 0.00 0.00 46.16 2.24
243 244 3.265489 AGATGGGGTCAAAGGGACTAAA 58.735 45.455 0.00 0.00 46.16 1.85
244 245 3.660669 AGATGGGGTCAAAGGGACTAAAA 59.339 43.478 0.00 0.00 46.16 1.52
245 246 3.975479 TGGGGTCAAAGGGACTAAAAA 57.025 42.857 0.00 0.00 46.16 1.94
261 262 1.969713 AAAAATGGGATGGGGCATGT 58.030 45.000 0.00 0.00 0.00 3.21
262 263 1.205966 AAAATGGGATGGGGCATGTG 58.794 50.000 0.00 0.00 0.00 3.21
263 264 0.043032 AAATGGGATGGGGCATGTGT 59.957 50.000 0.00 0.00 0.00 3.72
264 265 0.043032 AATGGGATGGGGCATGTGTT 59.957 50.000 0.00 0.00 0.00 3.32
265 266 0.043032 ATGGGATGGGGCATGTGTTT 59.957 50.000 0.00 0.00 0.00 2.83
266 267 0.903924 TGGGATGGGGCATGTGTTTG 60.904 55.000 0.00 0.00 0.00 2.93
267 268 1.616091 GGGATGGGGCATGTGTTTGG 61.616 60.000 0.00 0.00 0.00 3.28
268 269 1.616091 GGATGGGGCATGTGTTTGGG 61.616 60.000 0.00 0.00 0.00 4.12
269 270 0.904394 GATGGGGCATGTGTTTGGGT 60.904 55.000 0.00 0.00 0.00 4.51
270 271 0.904394 ATGGGGCATGTGTTTGGGTC 60.904 55.000 0.00 0.00 0.00 4.46
271 272 1.532794 GGGGCATGTGTTTGGGTCA 60.533 57.895 0.00 0.00 0.00 4.02
272 273 1.665442 GGGCATGTGTTTGGGTCAC 59.335 57.895 0.00 0.00 36.48 3.67
280 281 4.383850 TGTGTTTGGGTCACATTTTCTG 57.616 40.909 0.00 0.00 40.26 3.02
281 282 3.766591 TGTGTTTGGGTCACATTTTCTGT 59.233 39.130 0.00 0.00 40.26 3.41
282 283 4.142271 TGTGTTTGGGTCACATTTTCTGTC 60.142 41.667 0.00 0.00 40.26 3.51
283 284 4.097892 GTGTTTGGGTCACATTTTCTGTCT 59.902 41.667 0.00 0.00 35.29 3.41
284 285 5.298276 GTGTTTGGGTCACATTTTCTGTCTA 59.702 40.000 0.00 0.00 35.29 2.59
285 286 6.016276 GTGTTTGGGTCACATTTTCTGTCTAT 60.016 38.462 0.00 0.00 35.29 1.98
286 287 6.549364 TGTTTGGGTCACATTTTCTGTCTATT 59.451 34.615 0.00 0.00 35.29 1.73
287 288 7.069331 TGTTTGGGTCACATTTTCTGTCTATTT 59.931 33.333 0.00 0.00 35.29 1.40
288 289 6.573664 TGGGTCACATTTTCTGTCTATTTG 57.426 37.500 0.00 0.00 35.29 2.32
289 290 5.048083 TGGGTCACATTTTCTGTCTATTTGC 60.048 40.000 0.00 0.00 35.29 3.68
290 291 5.183904 GGGTCACATTTTCTGTCTATTTGCT 59.816 40.000 0.00 0.00 35.29 3.91
291 292 6.294731 GGGTCACATTTTCTGTCTATTTGCTT 60.295 38.462 0.00 0.00 35.29 3.91
292 293 6.803807 GGTCACATTTTCTGTCTATTTGCTTC 59.196 38.462 0.00 0.00 35.29 3.86
293 294 7.362662 GTCACATTTTCTGTCTATTTGCTTCA 58.637 34.615 0.00 0.00 35.29 3.02
294 295 7.862372 GTCACATTTTCTGTCTATTTGCTTCAA 59.138 33.333 0.00 0.00 35.29 2.69
295 296 8.412456 TCACATTTTCTGTCTATTTGCTTCAAA 58.588 29.630 0.00 0.00 35.29 2.69
296 297 8.697067 CACATTTTCTGTCTATTTGCTTCAAAG 58.303 33.333 0.00 0.00 34.63 2.77
297 298 8.416329 ACATTTTCTGTCTATTTGCTTCAAAGT 58.584 29.630 0.00 0.00 32.74 2.66
298 299 8.697067 CATTTTCTGTCTATTTGCTTCAAAGTG 58.303 33.333 0.00 0.00 36.76 3.16
299 300 6.942532 TTCTGTCTATTTGCTTCAAAGTGT 57.057 33.333 0.00 0.00 36.76 3.55
300 301 6.304356 TCTGTCTATTTGCTTCAAAGTGTG 57.696 37.500 0.00 0.00 36.76 3.82
301 302 5.239306 TCTGTCTATTTGCTTCAAAGTGTGG 59.761 40.000 0.00 0.00 36.76 4.17
302 303 5.129634 TGTCTATTTGCTTCAAAGTGTGGA 58.870 37.500 0.00 0.00 36.76 4.02
303 304 5.008613 TGTCTATTTGCTTCAAAGTGTGGAC 59.991 40.000 0.00 1.09 36.76 4.02
304 305 5.008613 GTCTATTTGCTTCAAAGTGTGGACA 59.991 40.000 0.00 0.00 36.76 4.02
305 306 3.502191 TTTGCTTCAAAGTGTGGACAC 57.498 42.857 1.42 1.42 46.77 3.67
320 321 5.046910 GTGGACACACACAGATAAAATGG 57.953 43.478 0.00 0.00 46.90 3.16
321 322 4.078537 TGGACACACACAGATAAAATGGG 58.921 43.478 0.00 0.00 0.00 4.00
322 323 4.202514 TGGACACACACAGATAAAATGGGA 60.203 41.667 0.00 0.00 0.00 4.37
323 324 4.949856 GGACACACACAGATAAAATGGGAT 59.050 41.667 0.00 0.00 0.00 3.85
324 325 5.066505 GGACACACACAGATAAAATGGGATC 59.933 44.000 0.00 0.00 0.00 3.36
325 326 5.819991 ACACACACAGATAAAATGGGATCT 58.180 37.500 0.00 0.00 32.48 2.75
326 327 6.957631 ACACACACAGATAAAATGGGATCTA 58.042 36.000 0.00 0.00 31.09 1.98
327 328 7.050377 ACACACACAGATAAAATGGGATCTAG 58.950 38.462 0.00 0.00 31.09 2.43
328 329 6.017605 CACACACAGATAAAATGGGATCTAGC 60.018 42.308 0.00 0.00 31.09 3.42
329 330 6.057533 CACACAGATAAAATGGGATCTAGCA 58.942 40.000 0.00 0.00 31.09 3.49
330 331 6.713903 CACACAGATAAAATGGGATCTAGCAT 59.286 38.462 0.00 0.00 31.09 3.79
331 332 7.230108 CACACAGATAAAATGGGATCTAGCATT 59.770 37.037 0.00 0.00 31.09 3.56
332 333 7.230108 ACACAGATAAAATGGGATCTAGCATTG 59.770 37.037 0.00 0.00 31.09 2.82
333 334 6.718454 ACAGATAAAATGGGATCTAGCATTGG 59.282 38.462 0.00 0.00 31.09 3.16
334 335 6.944290 CAGATAAAATGGGATCTAGCATTGGA 59.056 38.462 0.00 0.00 31.09 3.53
335 336 7.120873 CAGATAAAATGGGATCTAGCATTGGAG 59.879 40.741 0.00 0.00 31.09 3.86
336 337 4.803329 AAATGGGATCTAGCATTGGAGT 57.197 40.909 0.00 0.00 0.00 3.85
337 338 4.803329 AATGGGATCTAGCATTGGAGTT 57.197 40.909 0.00 0.00 0.00 3.01
338 339 3.565764 TGGGATCTAGCATTGGAGTTG 57.434 47.619 0.00 0.00 0.00 3.16
339 340 2.173356 TGGGATCTAGCATTGGAGTTGG 59.827 50.000 0.00 0.00 0.00 3.77
340 341 2.225467 GGATCTAGCATTGGAGTTGGC 58.775 52.381 0.00 0.00 0.00 4.52
341 342 2.225467 GATCTAGCATTGGAGTTGGCC 58.775 52.381 0.00 0.00 0.00 5.36
342 343 1.289160 TCTAGCATTGGAGTTGGCCT 58.711 50.000 3.32 0.00 0.00 5.19
343 344 1.065199 TCTAGCATTGGAGTTGGCCTG 60.065 52.381 3.32 0.00 0.00 4.85
344 345 0.991146 TAGCATTGGAGTTGGCCTGA 59.009 50.000 3.32 0.00 0.00 3.86
345 346 0.323178 AGCATTGGAGTTGGCCTGAG 60.323 55.000 3.32 0.00 0.00 3.35
346 347 1.941999 GCATTGGAGTTGGCCTGAGC 61.942 60.000 3.32 0.00 38.76 4.26
356 357 3.070576 GCCTGAGCCGGCCAAATT 61.071 61.111 26.15 2.91 44.41 1.82
357 358 3.068729 GCCTGAGCCGGCCAAATTC 62.069 63.158 26.15 14.83 44.41 2.17
358 359 1.678635 CCTGAGCCGGCCAAATTCA 60.679 57.895 26.15 19.03 0.00 2.57
359 360 1.508088 CTGAGCCGGCCAAATTCAC 59.492 57.895 26.15 5.22 0.00 3.18
360 361 0.962356 CTGAGCCGGCCAAATTCACT 60.962 55.000 26.15 0.00 0.00 3.41
361 362 1.243342 TGAGCCGGCCAAATTCACTG 61.243 55.000 26.15 0.00 0.00 3.66
362 363 1.228552 AGCCGGCCAAATTCACTGT 60.229 52.632 26.15 0.00 0.00 3.55
363 364 0.827507 AGCCGGCCAAATTCACTGTT 60.828 50.000 26.15 0.00 0.00 3.16
364 365 0.388520 GCCGGCCAAATTCACTGTTC 60.389 55.000 18.11 0.00 0.00 3.18
365 366 1.247567 CCGGCCAAATTCACTGTTCT 58.752 50.000 2.24 0.00 0.00 3.01
366 367 1.068333 CCGGCCAAATTCACTGTTCTG 60.068 52.381 2.24 0.00 0.00 3.02
367 368 1.879380 CGGCCAAATTCACTGTTCTGA 59.121 47.619 2.24 0.00 0.00 3.27
368 369 2.350772 CGGCCAAATTCACTGTTCTGAC 60.351 50.000 2.24 0.00 0.00 3.51
369 370 2.029918 GGCCAAATTCACTGTTCTGACC 60.030 50.000 0.00 0.00 0.00 4.02
370 371 2.029918 GCCAAATTCACTGTTCTGACCC 60.030 50.000 0.00 0.00 0.00 4.46
371 372 3.490348 CCAAATTCACTGTTCTGACCCT 58.510 45.455 0.00 0.00 0.00 4.34
372 373 3.891366 CCAAATTCACTGTTCTGACCCTT 59.109 43.478 0.00 0.00 0.00 3.95
373 374 5.070001 CCAAATTCACTGTTCTGACCCTTA 58.930 41.667 0.00 0.00 0.00 2.69
374 375 5.711976 CCAAATTCACTGTTCTGACCCTTAT 59.288 40.000 0.00 0.00 0.00 1.73
375 376 6.349611 CCAAATTCACTGTTCTGACCCTTATG 60.350 42.308 0.00 0.00 0.00 1.90
376 377 3.334583 TCACTGTTCTGACCCTTATGC 57.665 47.619 0.00 0.00 0.00 3.14
377 378 2.002586 CACTGTTCTGACCCTTATGCG 58.997 52.381 0.00 0.00 0.00 4.73
378 379 1.899814 ACTGTTCTGACCCTTATGCGA 59.100 47.619 0.00 0.00 0.00 5.10
379 380 2.301870 ACTGTTCTGACCCTTATGCGAA 59.698 45.455 0.00 0.00 0.00 4.70
380 381 3.244422 ACTGTTCTGACCCTTATGCGAAA 60.244 43.478 0.00 0.00 0.00 3.46
381 382 3.334691 TGTTCTGACCCTTATGCGAAAG 58.665 45.455 0.00 0.00 0.00 2.62
382 383 3.244422 TGTTCTGACCCTTATGCGAAAGT 60.244 43.478 0.00 0.00 0.00 2.66
383 384 3.695830 TCTGACCCTTATGCGAAAGTT 57.304 42.857 0.00 0.00 0.00 2.66
384 385 4.015872 TCTGACCCTTATGCGAAAGTTT 57.984 40.909 0.00 0.00 0.00 2.66
385 386 5.155278 TCTGACCCTTATGCGAAAGTTTA 57.845 39.130 0.00 0.00 0.00 2.01
386 387 4.933400 TCTGACCCTTATGCGAAAGTTTAC 59.067 41.667 0.00 0.00 0.00 2.01
387 388 4.004982 TGACCCTTATGCGAAAGTTTACC 58.995 43.478 0.00 0.00 0.00 2.85
388 389 4.004982 GACCCTTATGCGAAAGTTTACCA 58.995 43.478 0.00 0.00 0.00 3.25
389 390 3.754850 ACCCTTATGCGAAAGTTTACCAC 59.245 43.478 0.00 0.00 0.00 4.16
390 391 3.181514 CCCTTATGCGAAAGTTTACCACG 60.182 47.826 0.00 0.00 0.00 4.94
391 392 3.680937 CCTTATGCGAAAGTTTACCACGA 59.319 43.478 0.00 0.00 0.00 4.35
392 393 4.331717 CCTTATGCGAAAGTTTACCACGAT 59.668 41.667 0.00 0.00 0.00 3.73
393 394 5.163794 CCTTATGCGAAAGTTTACCACGATT 60.164 40.000 0.00 0.00 0.00 3.34
394 395 4.759516 ATGCGAAAGTTTACCACGATTT 57.240 36.364 0.00 0.00 0.00 2.17
395 396 3.879427 TGCGAAAGTTTACCACGATTTG 58.121 40.909 0.00 0.00 0.00 2.32
396 397 3.560481 TGCGAAAGTTTACCACGATTTGA 59.440 39.130 0.00 0.00 0.00 2.69
397 398 3.904234 GCGAAAGTTTACCACGATTTGAC 59.096 43.478 0.00 0.00 0.00 3.18
398 399 4.460505 CGAAAGTTTACCACGATTTGACC 58.539 43.478 0.00 0.00 0.00 4.02
399 400 4.024725 CGAAAGTTTACCACGATTTGACCA 60.025 41.667 0.00 0.00 0.00 4.02
400 401 5.334569 CGAAAGTTTACCACGATTTGACCAT 60.335 40.000 0.00 0.00 0.00 3.55
401 402 6.128499 CGAAAGTTTACCACGATTTGACCATA 60.128 38.462 0.00 0.00 0.00 2.74
402 403 7.413657 CGAAAGTTTACCACGATTTGACCATAT 60.414 37.037 0.00 0.00 0.00 1.78
403 404 7.696992 AAGTTTACCACGATTTGACCATATT 57.303 32.000 0.00 0.00 0.00 1.28
404 405 7.316544 AGTTTACCACGATTTGACCATATTC 57.683 36.000 0.00 0.00 0.00 1.75
405 406 5.977171 TTACCACGATTTGACCATATTCG 57.023 39.130 0.00 0.00 0.00 3.34
406 407 3.869065 ACCACGATTTGACCATATTCGT 58.131 40.909 0.00 0.00 0.00 3.85
407 408 5.013568 ACCACGATTTGACCATATTCGTA 57.986 39.130 0.00 0.00 0.00 3.43
408 409 5.421277 ACCACGATTTGACCATATTCGTAA 58.579 37.500 0.00 0.00 0.00 3.18
409 410 5.875910 ACCACGATTTGACCATATTCGTAAA 59.124 36.000 0.00 0.00 0.00 2.01
410 411 6.372103 ACCACGATTTGACCATATTCGTAAAA 59.628 34.615 0.00 0.00 0.00 1.52
411 412 7.094720 ACCACGATTTGACCATATTCGTAAAAA 60.095 33.333 0.00 0.00 0.00 1.94
434 435 9.671279 AAAAAGTTTGAATCTGACCATTTTTCT 57.329 25.926 0.00 0.00 0.00 2.52
436 437 9.750125 AAAGTTTGAATCTGACCATTTTTCTAC 57.250 29.630 0.00 0.00 0.00 2.59
437 438 7.886338 AGTTTGAATCTGACCATTTTTCTACC 58.114 34.615 0.00 0.00 0.00 3.18
438 439 7.505585 AGTTTGAATCTGACCATTTTTCTACCA 59.494 33.333 0.00 0.00 0.00 3.25
439 440 8.306761 GTTTGAATCTGACCATTTTTCTACCAT 58.693 33.333 0.00 0.00 0.00 3.55
440 441 7.630242 TGAATCTGACCATTTTTCTACCATC 57.370 36.000 0.00 0.00 0.00 3.51
441 442 7.174413 TGAATCTGACCATTTTTCTACCATCA 58.826 34.615 0.00 0.00 0.00 3.07
442 443 7.835682 TGAATCTGACCATTTTTCTACCATCAT 59.164 33.333 0.00 0.00 0.00 2.45
443 444 9.342308 GAATCTGACCATTTTTCTACCATCATA 57.658 33.333 0.00 0.00 0.00 2.15
444 445 8.915057 ATCTGACCATTTTTCTACCATCATAG 57.085 34.615 0.00 0.00 0.00 2.23
445 446 8.089625 TCTGACCATTTTTCTACCATCATAGA 57.910 34.615 0.00 0.00 0.00 1.98
446 447 8.717717 TCTGACCATTTTTCTACCATCATAGAT 58.282 33.333 0.00 0.00 31.25 1.98
447 448 8.681486 TGACCATTTTTCTACCATCATAGATG 57.319 34.615 0.07 0.07 31.25 2.90
448 449 8.274322 TGACCATTTTTCTACCATCATAGATGT 58.726 33.333 6.29 0.00 31.25 3.06
449 450 9.125026 GACCATTTTTCTACCATCATAGATGTT 57.875 33.333 6.29 0.00 31.25 2.71
450 451 8.906867 ACCATTTTTCTACCATCATAGATGTTG 58.093 33.333 6.29 0.00 31.25 3.33
452 453 6.942532 TTTTCTACCATCATAGATGTTGGC 57.057 37.500 16.30 0.00 46.63 4.52
453 454 5.628797 TTCTACCATCATAGATGTTGGCA 57.371 39.130 16.30 6.08 46.63 4.92
454 455 5.219343 TCTACCATCATAGATGTTGGCAG 57.781 43.478 16.30 13.78 46.63 4.85
455 456 3.939740 ACCATCATAGATGTTGGCAGT 57.060 42.857 16.30 0.00 46.63 4.40
456 457 5.838521 TCTACCATCATAGATGTTGGCAGTA 59.161 40.000 16.30 4.66 46.63 2.74
457 458 4.965814 ACCATCATAGATGTTGGCAGTAG 58.034 43.478 16.30 0.00 46.63 2.57
458 459 4.202398 ACCATCATAGATGTTGGCAGTAGG 60.202 45.833 16.30 0.00 46.63 3.18
459 460 3.475566 TCATAGATGTTGGCAGTAGGC 57.524 47.619 0.00 0.00 43.74 3.93
460 461 3.041211 TCATAGATGTTGGCAGTAGGCT 58.959 45.455 0.00 0.00 44.01 4.58
461 462 3.455910 TCATAGATGTTGGCAGTAGGCTT 59.544 43.478 0.00 0.00 44.01 4.35
462 463 2.887151 AGATGTTGGCAGTAGGCTTT 57.113 45.000 0.00 0.00 44.01 3.51
463 464 3.160679 AGATGTTGGCAGTAGGCTTTT 57.839 42.857 0.00 0.00 44.01 2.27
464 465 2.821969 AGATGTTGGCAGTAGGCTTTTG 59.178 45.455 0.00 0.00 44.01 2.44
465 466 1.327303 TGTTGGCAGTAGGCTTTTGG 58.673 50.000 0.00 0.00 44.01 3.28
466 467 1.328279 GTTGGCAGTAGGCTTTTGGT 58.672 50.000 0.00 0.00 44.01 3.67
467 468 1.269723 GTTGGCAGTAGGCTTTTGGTC 59.730 52.381 0.00 0.00 44.01 4.02
468 469 0.476338 TGGCAGTAGGCTTTTGGTCA 59.524 50.000 0.00 0.00 44.01 4.02
469 470 1.133637 TGGCAGTAGGCTTTTGGTCAA 60.134 47.619 0.00 0.00 44.01 3.18
470 471 1.269723 GGCAGTAGGCTTTTGGTCAAC 59.730 52.381 0.00 0.00 44.01 3.18
471 472 1.953686 GCAGTAGGCTTTTGGTCAACA 59.046 47.619 0.00 0.00 40.25 3.33
472 473 2.558359 GCAGTAGGCTTTTGGTCAACAT 59.442 45.455 0.00 0.00 40.25 2.71
473 474 3.756434 GCAGTAGGCTTTTGGTCAACATA 59.244 43.478 0.00 0.00 40.25 2.29
474 475 4.217550 GCAGTAGGCTTTTGGTCAACATAA 59.782 41.667 0.00 0.00 40.25 1.90
475 476 5.105756 GCAGTAGGCTTTTGGTCAACATAAT 60.106 40.000 0.00 0.00 40.25 1.28
476 477 6.324819 CAGTAGGCTTTTGGTCAACATAATG 58.675 40.000 0.00 0.00 0.00 1.90
477 478 6.150976 CAGTAGGCTTTTGGTCAACATAATGA 59.849 38.462 0.00 0.00 0.00 2.57
489 490 6.718522 TCAACATAATGACATGGCAATGAT 57.281 33.333 18.23 5.32 37.24 2.45
490 491 7.114866 TCAACATAATGACATGGCAATGATT 57.885 32.000 18.23 5.36 37.24 2.57
491 492 6.981559 TCAACATAATGACATGGCAATGATTG 59.018 34.615 18.23 16.50 37.24 2.67
492 493 5.849510 ACATAATGACATGGCAATGATTGG 58.150 37.500 18.23 3.11 37.24 3.16
500 501 2.758497 GCAATGATTGGCAAGTGGC 58.242 52.632 5.96 0.00 43.74 5.01
501 502 1.079875 GCAATGATTGGCAAGTGGCG 61.080 55.000 5.96 0.00 46.16 5.69
502 503 0.527113 CAATGATTGGCAAGTGGCGA 59.473 50.000 5.96 0.00 46.16 5.54
503 504 0.527565 AATGATTGGCAAGTGGCGAC 59.472 50.000 5.96 0.00 46.16 5.19
504 505 1.315257 ATGATTGGCAAGTGGCGACC 61.315 55.000 5.96 0.00 46.16 4.79
505 506 1.675641 GATTGGCAAGTGGCGACCT 60.676 57.895 5.96 0.00 46.16 3.85
506 507 0.392461 GATTGGCAAGTGGCGACCTA 60.392 55.000 5.96 0.00 46.16 3.08
507 508 0.392998 ATTGGCAAGTGGCGACCTAG 60.393 55.000 5.96 0.00 46.16 3.02
508 509 2.125106 GGCAAGTGGCGACCTAGG 60.125 66.667 7.41 7.41 46.16 3.02
509 510 2.820037 GCAAGTGGCGACCTAGGC 60.820 66.667 9.30 0.36 37.19 3.93
515 516 3.459063 GGCGACCTAGGCCGAAGT 61.459 66.667 22.74 0.00 41.39 3.01
516 517 2.123428 GGCGACCTAGGCCGAAGTA 61.123 63.158 22.74 0.00 41.39 2.24
517 518 1.669999 GGCGACCTAGGCCGAAGTAA 61.670 60.000 22.74 0.00 41.39 2.24
518 519 0.174162 GCGACCTAGGCCGAAGTAAA 59.826 55.000 22.74 0.00 0.00 2.01
519 520 1.202498 GCGACCTAGGCCGAAGTAAAT 60.202 52.381 22.74 0.00 0.00 1.40
520 521 2.470821 CGACCTAGGCCGAAGTAAATG 58.529 52.381 12.78 0.00 0.00 2.32
521 522 2.210961 GACCTAGGCCGAAGTAAATGC 58.789 52.381 9.30 0.00 0.00 3.56
522 523 1.838077 ACCTAGGCCGAAGTAAATGCT 59.162 47.619 9.30 0.00 0.00 3.79
523 524 3.036091 ACCTAGGCCGAAGTAAATGCTA 58.964 45.455 9.30 0.00 0.00 3.49
524 525 3.646637 ACCTAGGCCGAAGTAAATGCTAT 59.353 43.478 9.30 0.00 0.00 2.97
525 526 4.836736 ACCTAGGCCGAAGTAAATGCTATA 59.163 41.667 9.30 0.00 0.00 1.31
526 527 5.306160 ACCTAGGCCGAAGTAAATGCTATAA 59.694 40.000 9.30 0.00 0.00 0.98
527 528 6.183361 ACCTAGGCCGAAGTAAATGCTATAAA 60.183 38.462 9.30 0.00 0.00 1.40
528 529 6.879458 CCTAGGCCGAAGTAAATGCTATAAAT 59.121 38.462 0.00 0.00 0.00 1.40
529 530 8.038944 CCTAGGCCGAAGTAAATGCTATAAATA 58.961 37.037 0.00 0.00 0.00 1.40
530 531 9.431887 CTAGGCCGAAGTAAATGCTATAAATAA 57.568 33.333 0.00 0.00 0.00 1.40
531 532 8.863872 AGGCCGAAGTAAATGCTATAAATAAT 57.136 30.769 0.00 0.00 0.00 1.28
532 533 8.730680 AGGCCGAAGTAAATGCTATAAATAATG 58.269 33.333 0.00 0.00 0.00 1.90
533 534 8.512138 GGCCGAAGTAAATGCTATAAATAATGT 58.488 33.333 0.00 0.00 0.00 2.71
534 535 9.329913 GCCGAAGTAAATGCTATAAATAATGTG 57.670 33.333 0.00 0.00 0.00 3.21
535 536 9.825972 CCGAAGTAAATGCTATAAATAATGTGG 57.174 33.333 0.00 0.00 0.00 4.17
540 541 9.490663 GTAAATGCTATAAATAATGTGGATCGC 57.509 33.333 0.00 0.00 0.00 4.58
541 542 6.683974 ATGCTATAAATAATGTGGATCGCC 57.316 37.500 0.00 0.00 0.00 5.54
542 543 4.941263 TGCTATAAATAATGTGGATCGCCC 59.059 41.667 0.00 0.00 0.00 6.13
543 544 4.941263 GCTATAAATAATGTGGATCGCCCA 59.059 41.667 0.00 0.00 44.25 5.36
551 552 3.918134 TGGATCGCCCAGTAGTACT 57.082 52.632 0.00 0.00 40.82 2.73
553 554 3.301794 TGGATCGCCCAGTAGTACTAA 57.698 47.619 3.61 0.00 40.82 2.24
554 555 3.634504 TGGATCGCCCAGTAGTACTAAA 58.365 45.455 3.61 0.00 40.82 1.85
555 556 3.382546 TGGATCGCCCAGTAGTACTAAAC 59.617 47.826 3.61 0.00 40.82 2.01
556 557 3.635836 GGATCGCCCAGTAGTACTAAACT 59.364 47.826 3.61 0.00 37.25 2.66
557 558 4.499357 GGATCGCCCAGTAGTACTAAACTG 60.499 50.000 15.99 15.99 42.25 3.16
558 559 2.165030 TCGCCCAGTAGTACTAAACTGC 59.835 50.000 17.11 11.33 41.45 4.40
567 568 3.522553 AGTACTAAACTGCTTCGATGGC 58.477 45.455 0.00 2.34 36.93 4.40
568 569 2.770164 ACTAAACTGCTTCGATGGCT 57.230 45.000 11.24 0.00 0.00 4.75
569 570 2.350522 ACTAAACTGCTTCGATGGCTG 58.649 47.619 13.32 13.32 35.32 4.85
570 571 1.667724 CTAAACTGCTTCGATGGCTGG 59.332 52.381 17.15 10.62 33.87 4.85
571 572 1.589716 AAACTGCTTCGATGGCTGGC 61.590 55.000 17.15 0.00 33.87 4.85
572 573 2.124819 CTGCTTCGATGGCTGGCT 60.125 61.111 11.24 0.00 0.00 4.75
573 574 2.437180 TGCTTCGATGGCTGGCTG 60.437 61.111 11.24 0.00 0.00 4.85
574 575 3.207669 GCTTCGATGGCTGGCTGG 61.208 66.667 2.00 0.00 0.00 4.85
575 576 2.270205 CTTCGATGGCTGGCTGGT 59.730 61.111 2.00 0.00 0.00 4.00
576 577 1.377725 CTTCGATGGCTGGCTGGTT 60.378 57.895 2.00 0.00 0.00 3.67
577 578 0.107703 CTTCGATGGCTGGCTGGTTA 60.108 55.000 2.00 0.00 0.00 2.85
578 579 0.107703 TTCGATGGCTGGCTGGTTAG 60.108 55.000 2.00 0.00 0.00 2.34
579 580 1.524621 CGATGGCTGGCTGGTTAGG 60.525 63.158 2.00 0.00 0.00 2.69
580 581 1.152881 GATGGCTGGCTGGTTAGGG 60.153 63.158 2.00 0.00 0.00 3.53
581 582 3.364907 ATGGCTGGCTGGTTAGGGC 62.365 63.158 2.00 0.00 0.00 5.19
583 584 4.410400 GCTGGCTGGTTAGGGCGT 62.410 66.667 0.00 0.00 0.00 5.68
584 585 2.436646 CTGGCTGGTTAGGGCGTG 60.437 66.667 0.00 0.00 0.00 5.34
585 586 4.715523 TGGCTGGTTAGGGCGTGC 62.716 66.667 0.00 0.00 0.00 5.34
586 587 4.410400 GGCTGGTTAGGGCGTGCT 62.410 66.667 0.00 0.00 0.00 4.40
587 588 2.820037 GCTGGTTAGGGCGTGCTC 60.820 66.667 0.00 0.00 0.00 4.26
588 589 2.509336 CTGGTTAGGGCGTGCTCG 60.509 66.667 3.31 3.31 40.37 5.03
589 590 3.296709 CTGGTTAGGGCGTGCTCGT 62.297 63.158 10.18 0.00 39.49 4.18
590 591 2.047560 GGTTAGGGCGTGCTCGTT 60.048 61.111 10.18 0.00 39.49 3.85
591 592 1.216178 GGTTAGGGCGTGCTCGTTA 59.784 57.895 10.18 0.00 39.49 3.18
592 593 0.804933 GGTTAGGGCGTGCTCGTTAG 60.805 60.000 10.18 0.00 39.49 2.34
602 603 3.180984 GCTCGTTAGCGACCATAGG 57.819 57.895 0.00 0.00 42.81 2.57
603 604 0.384669 GCTCGTTAGCGACCATAGGT 59.615 55.000 0.00 0.00 42.81 3.08
620 621 8.066612 ACCATAGGTCTTTGGTTTGATATTTG 57.933 34.615 7.19 0.00 41.15 2.32
621 622 6.980397 CCATAGGTCTTTGGTTTGATATTTGC 59.020 38.462 0.20 0.00 0.00 3.68
622 623 5.405935 AGGTCTTTGGTTTGATATTTGCC 57.594 39.130 0.00 0.00 0.00 4.52
623 624 4.837860 AGGTCTTTGGTTTGATATTTGCCA 59.162 37.500 0.00 0.00 0.00 4.92
624 625 5.306678 AGGTCTTTGGTTTGATATTTGCCAA 59.693 36.000 0.00 0.00 37.42 4.52
625 626 5.639082 GGTCTTTGGTTTGATATTTGCCAAG 59.361 40.000 0.00 0.00 39.89 3.61
626 627 5.639082 GTCTTTGGTTTGATATTTGCCAAGG 59.361 40.000 0.00 0.00 39.89 3.61
627 628 5.541868 TCTTTGGTTTGATATTTGCCAAGGA 59.458 36.000 0.00 0.00 41.07 3.36
628 629 4.799564 TGGTTTGATATTTGCCAAGGAC 57.200 40.909 0.00 0.00 0.00 3.85
629 630 4.155709 TGGTTTGATATTTGCCAAGGACA 58.844 39.130 0.00 0.00 0.00 4.02
630 631 4.590647 TGGTTTGATATTTGCCAAGGACAA 59.409 37.500 0.00 0.00 0.00 3.18
631 632 5.070981 TGGTTTGATATTTGCCAAGGACAAA 59.929 36.000 9.84 9.84 40.98 2.83
632 633 6.172630 GGTTTGATATTTGCCAAGGACAAAT 58.827 36.000 18.51 18.51 46.56 2.32
674 675 7.487822 TTTGCCCAATCTCTCTCTATATAGG 57.512 40.000 9.89 1.42 0.00 2.57
675 676 6.408770 TGCCCAATCTCTCTCTATATAGGA 57.591 41.667 9.89 5.52 0.00 2.94
676 677 6.430864 TGCCCAATCTCTCTCTATATAGGAG 58.569 44.000 16.34 16.34 0.00 3.69
677 678 6.011185 TGCCCAATCTCTCTCTATATAGGAGT 60.011 42.308 19.40 4.81 33.06 3.85
678 679 7.184753 TGCCCAATCTCTCTCTATATAGGAGTA 59.815 40.741 19.40 13.30 33.06 2.59
679 680 8.224720 GCCCAATCTCTCTCTATATAGGAGTAT 58.775 40.741 19.40 14.34 33.06 2.12
725 727 0.537143 AACCACGCATTGCTTCTGGA 60.537 50.000 18.54 0.00 0.00 3.86
786 789 1.522668 TGAGAATTCAACCCGCACTG 58.477 50.000 8.44 0.00 0.00 3.66
861 864 4.023291 TGCATTTTAGAGGATTCAACCCC 58.977 43.478 0.00 0.00 0.00 4.95
908 913 1.002430 TGAGCAGGGTCAACTCATCAC 59.998 52.381 0.00 0.00 35.58 3.06
1004 1019 1.608717 GGTCTGCGGAGAGTGATGGT 61.609 60.000 6.98 0.00 0.00 3.55
1908 2093 5.699915 CCTGAGCTATACATTTGATGGAGTG 59.300 44.000 0.00 0.00 33.60 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.706301 CGCTCAACATGCAGACGAG 59.294 57.895 0.00 0.00 0.00 4.18
1 2 2.382746 GCGCTCAACATGCAGACGA 61.383 57.895 0.00 0.00 0.00 4.20
2 3 2.097160 GCGCTCAACATGCAGACG 59.903 61.111 0.00 0.00 0.00 4.18
3 4 2.482374 GGCGCTCAACATGCAGAC 59.518 61.111 7.64 0.00 0.00 3.51
4 5 3.120385 CGGCGCTCAACATGCAGA 61.120 61.111 7.64 0.00 0.00 4.26
5 6 3.425713 ACGGCGCTCAACATGCAG 61.426 61.111 6.90 0.00 0.00 4.41
6 7 3.725459 CACGGCGCTCAACATGCA 61.725 61.111 6.90 0.00 0.00 3.96
7 8 4.465512 CCACGGCGCTCAACATGC 62.466 66.667 6.90 0.00 0.00 4.06
8 9 4.465512 GCCACGGCGCTCAACATG 62.466 66.667 6.90 0.00 0.00 3.21
31 32 2.434884 CACCACGCTAGGCCAGTG 60.435 66.667 5.01 9.89 40.83 3.66
32 33 3.706373 CCACCACGCTAGGCCAGT 61.706 66.667 5.01 0.00 0.00 4.00
33 34 4.473520 CCCACCACGCTAGGCCAG 62.474 72.222 5.01 0.97 0.00 4.85
34 35 3.908904 TACCCACCACGCTAGGCCA 62.909 63.158 5.01 0.00 0.00 5.36
35 36 2.187896 TTTACCCACCACGCTAGGCC 62.188 60.000 0.00 0.00 0.00 5.19
36 37 0.321830 TTTTACCCACCACGCTAGGC 60.322 55.000 0.00 0.00 0.00 3.93
37 38 2.188062 TTTTTACCCACCACGCTAGG 57.812 50.000 0.00 0.00 0.00 3.02
53 54 4.243643 TCTTTCCCTCTCTCCTCCTTTTT 58.756 43.478 0.00 0.00 0.00 1.94
54 55 3.843619 CTCTTTCCCTCTCTCCTCCTTTT 59.156 47.826 0.00 0.00 0.00 2.27
55 56 3.078305 TCTCTTTCCCTCTCTCCTCCTTT 59.922 47.826 0.00 0.00 0.00 3.11
56 57 2.657459 TCTCTTTCCCTCTCTCCTCCTT 59.343 50.000 0.00 0.00 0.00 3.36
57 58 2.244769 CTCTCTTTCCCTCTCTCCTCCT 59.755 54.545 0.00 0.00 0.00 3.69
58 59 2.666317 CTCTCTTTCCCTCTCTCCTCC 58.334 57.143 0.00 0.00 0.00 4.30
59 60 2.031870 GCTCTCTTTCCCTCTCTCCTC 58.968 57.143 0.00 0.00 0.00 3.71
60 61 1.684869 CGCTCTCTTTCCCTCTCTCCT 60.685 57.143 0.00 0.00 0.00 3.69
61 62 0.744281 CGCTCTCTTTCCCTCTCTCC 59.256 60.000 0.00 0.00 0.00 3.71
62 63 0.744281 CCGCTCTCTTTCCCTCTCTC 59.256 60.000 0.00 0.00 0.00 3.20
63 64 0.040499 ACCGCTCTCTTTCCCTCTCT 59.960 55.000 0.00 0.00 0.00 3.10
64 65 0.174617 CACCGCTCTCTTTCCCTCTC 59.825 60.000 0.00 0.00 0.00 3.20
65 66 0.543174 ACACCGCTCTCTTTCCCTCT 60.543 55.000 0.00 0.00 0.00 3.69
66 67 0.390472 CACACCGCTCTCTTTCCCTC 60.390 60.000 0.00 0.00 0.00 4.30
67 68 1.674057 CACACCGCTCTCTTTCCCT 59.326 57.895 0.00 0.00 0.00 4.20
68 69 1.376037 CCACACCGCTCTCTTTCCC 60.376 63.158 0.00 0.00 0.00 3.97
69 70 0.951040 CACCACACCGCTCTCTTTCC 60.951 60.000 0.00 0.00 0.00 3.13
70 71 0.951040 CCACCACACCGCTCTCTTTC 60.951 60.000 0.00 0.00 0.00 2.62
71 72 1.071471 CCACCACACCGCTCTCTTT 59.929 57.895 0.00 0.00 0.00 2.52
72 73 2.743718 CCACCACACCGCTCTCTT 59.256 61.111 0.00 0.00 0.00 2.85
73 74 3.314331 CCCACCACACCGCTCTCT 61.314 66.667 0.00 0.00 0.00 3.10
74 75 3.626924 ACCCACCACACCGCTCTC 61.627 66.667 0.00 0.00 0.00 3.20
75 76 3.941188 CACCCACCACACCGCTCT 61.941 66.667 0.00 0.00 0.00 4.09
79 80 4.947147 CCACCACCCACCACACCG 62.947 72.222 0.00 0.00 0.00 4.94
80 81 4.596585 CCCACCACCCACCACACC 62.597 72.222 0.00 0.00 0.00 4.16
81 82 3.785122 GACCCACCACCCACCACAC 62.785 68.421 0.00 0.00 0.00 3.82
82 83 3.494254 GACCCACCACCCACCACA 61.494 66.667 0.00 0.00 0.00 4.17
83 84 4.280019 GGACCCACCACCCACCAC 62.280 72.222 0.00 0.00 38.79 4.16
84 85 4.845307 TGGACCCACCACCCACCA 62.845 66.667 0.00 0.00 44.64 4.17
92 93 0.250989 TCCGAACAAATGGACCCACC 60.251 55.000 0.00 0.00 39.54 4.61
93 94 1.472480 CATCCGAACAAATGGACCCAC 59.528 52.381 0.00 0.00 37.02 4.61
94 95 1.352687 TCATCCGAACAAATGGACCCA 59.647 47.619 0.00 0.00 37.02 4.51
95 96 2.122783 TCATCCGAACAAATGGACCC 57.877 50.000 0.00 0.00 37.02 4.46
96 97 3.756434 TCTTTCATCCGAACAAATGGACC 59.244 43.478 0.00 0.00 37.02 4.46
97 98 4.669197 CGTCTTTCATCCGAACAAATGGAC 60.669 45.833 0.00 0.00 37.02 4.02
98 99 3.435327 CGTCTTTCATCCGAACAAATGGA 59.565 43.478 0.00 0.00 38.95 3.41
99 100 3.426159 CCGTCTTTCATCCGAACAAATGG 60.426 47.826 0.00 0.00 0.00 3.16
100 101 3.435327 TCCGTCTTTCATCCGAACAAATG 59.565 43.478 0.00 0.00 0.00 2.32
101 102 3.670625 TCCGTCTTTCATCCGAACAAAT 58.329 40.909 0.00 0.00 0.00 2.32
102 103 3.114668 TCCGTCTTTCATCCGAACAAA 57.885 42.857 0.00 0.00 0.00 2.83
103 104 2.823924 TCCGTCTTTCATCCGAACAA 57.176 45.000 0.00 0.00 0.00 2.83
104 105 2.232696 TGATCCGTCTTTCATCCGAACA 59.767 45.455 0.00 0.00 0.00 3.18
105 106 2.888594 TGATCCGTCTTTCATCCGAAC 58.111 47.619 0.00 0.00 0.00 3.95
106 107 3.132111 TGATGATCCGTCTTTCATCCGAA 59.868 43.478 9.67 0.00 44.93 4.30
107 108 2.693074 TGATGATCCGTCTTTCATCCGA 59.307 45.455 9.67 0.00 44.93 4.55
108 109 3.097877 TGATGATCCGTCTTTCATCCG 57.902 47.619 9.67 0.00 44.93 4.18
109 110 4.689812 CAGATGATGATCCGTCTTTCATCC 59.310 45.833 9.67 0.00 44.93 3.51
110 111 4.152045 GCAGATGATGATCCGTCTTTCATC 59.848 45.833 6.07 6.07 45.47 2.92
111 112 4.063689 GCAGATGATGATCCGTCTTTCAT 58.936 43.478 0.00 0.00 35.33 2.57
112 113 3.118665 TGCAGATGATGATCCGTCTTTCA 60.119 43.478 0.00 0.00 30.45 2.69
113 114 3.461061 TGCAGATGATGATCCGTCTTTC 58.539 45.455 0.00 0.00 30.45 2.62
114 115 3.548745 TGCAGATGATGATCCGTCTTT 57.451 42.857 0.00 0.00 30.45 2.52
115 116 3.400255 CATGCAGATGATGATCCGTCTT 58.600 45.455 0.00 0.00 30.45 3.01
116 117 2.870835 GCATGCAGATGATGATCCGTCT 60.871 50.000 14.21 0.00 32.94 4.18
117 118 1.463831 GCATGCAGATGATGATCCGTC 59.536 52.381 14.21 0.00 0.00 4.79
118 119 1.202722 TGCATGCAGATGATGATCCGT 60.203 47.619 18.46 0.00 0.00 4.69
119 120 1.519408 TGCATGCAGATGATGATCCG 58.481 50.000 18.46 0.00 0.00 4.18
120 121 3.367395 CCATTGCATGCAGATGATGATCC 60.367 47.826 28.93 0.00 0.00 3.36
121 122 3.506067 TCCATTGCATGCAGATGATGATC 59.494 43.478 28.93 0.00 0.00 2.92
122 123 3.255888 GTCCATTGCATGCAGATGATGAT 59.744 43.478 28.93 15.63 0.00 2.45
123 124 2.621526 GTCCATTGCATGCAGATGATGA 59.378 45.455 28.93 20.71 0.00 2.92
124 125 2.360801 TGTCCATTGCATGCAGATGATG 59.639 45.455 28.93 24.54 0.00 3.07
125 126 2.361119 GTGTCCATTGCATGCAGATGAT 59.639 45.455 28.93 17.11 0.00 2.45
126 127 1.746787 GTGTCCATTGCATGCAGATGA 59.253 47.619 28.93 20.82 0.00 2.92
127 128 1.474879 TGTGTCCATTGCATGCAGATG 59.525 47.619 21.50 23.25 0.00 2.90
128 129 1.749063 CTGTGTCCATTGCATGCAGAT 59.251 47.619 21.50 14.15 0.00 2.90
129 130 1.170442 CTGTGTCCATTGCATGCAGA 58.830 50.000 21.50 12.33 0.00 4.26
130 131 0.457853 GCTGTGTCCATTGCATGCAG 60.458 55.000 21.50 10.33 0.00 4.41
131 132 1.179814 TGCTGTGTCCATTGCATGCA 61.180 50.000 18.46 18.46 0.00 3.96
132 133 0.457853 CTGCTGTGTCCATTGCATGC 60.458 55.000 11.82 11.82 34.79 4.06
133 134 0.172578 CCTGCTGTGTCCATTGCATG 59.827 55.000 0.00 0.00 34.79 4.06
134 135 0.038599 TCCTGCTGTGTCCATTGCAT 59.961 50.000 0.00 0.00 34.79 3.96
135 136 0.890542 GTCCTGCTGTGTCCATTGCA 60.891 55.000 0.00 0.00 0.00 4.08
136 137 0.890542 TGTCCTGCTGTGTCCATTGC 60.891 55.000 0.00 0.00 0.00 3.56
137 138 1.471287 CATGTCCTGCTGTGTCCATTG 59.529 52.381 0.00 0.00 0.00 2.82
138 139 1.615116 CCATGTCCTGCTGTGTCCATT 60.615 52.381 0.00 0.00 0.00 3.16
139 140 0.034767 CCATGTCCTGCTGTGTCCAT 60.035 55.000 0.00 0.00 0.00 3.41
140 141 1.376086 CCATGTCCTGCTGTGTCCA 59.624 57.895 0.00 0.00 0.00 4.02
141 142 1.377725 CCCATGTCCTGCTGTGTCC 60.378 63.158 0.00 0.00 0.00 4.02
142 143 1.377725 CCCCATGTCCTGCTGTGTC 60.378 63.158 0.00 0.00 0.00 3.67
143 144 1.847506 TCCCCATGTCCTGCTGTGT 60.848 57.895 0.00 0.00 0.00 3.72
144 145 1.377725 GTCCCCATGTCCTGCTGTG 60.378 63.158 0.00 0.00 0.00 3.66
145 146 2.959484 CGTCCCCATGTCCTGCTGT 61.959 63.158 0.00 0.00 0.00 4.40
146 147 1.613317 TACGTCCCCATGTCCTGCTG 61.613 60.000 0.00 0.00 0.00 4.41
147 148 1.305802 TACGTCCCCATGTCCTGCT 60.306 57.895 0.00 0.00 0.00 4.24
148 149 1.144057 CTACGTCCCCATGTCCTGC 59.856 63.158 0.00 0.00 0.00 4.85
149 150 1.144057 GCTACGTCCCCATGTCCTG 59.856 63.158 0.00 0.00 0.00 3.86
150 151 0.907704 TTGCTACGTCCCCATGTCCT 60.908 55.000 0.00 0.00 0.00 3.85
151 152 0.035820 TTTGCTACGTCCCCATGTCC 60.036 55.000 0.00 0.00 0.00 4.02
152 153 1.084289 GTTTGCTACGTCCCCATGTC 58.916 55.000 0.00 0.00 0.00 3.06
153 154 0.672401 CGTTTGCTACGTCCCCATGT 60.672 55.000 0.00 0.00 45.14 3.21
154 155 2.086510 CGTTTGCTACGTCCCCATG 58.913 57.895 0.00 0.00 45.14 3.66
155 156 4.609995 CGTTTGCTACGTCCCCAT 57.390 55.556 0.00 0.00 45.14 4.00
168 169 0.392729 TGGACACAAACCGGACGTTT 60.393 50.000 9.46 0.00 45.83 3.60
169 170 1.091197 GTGGACACAAACCGGACGTT 61.091 55.000 9.46 0.00 35.70 3.99
170 171 1.522130 GTGGACACAAACCGGACGT 60.522 57.895 9.46 0.00 0.00 4.34
171 172 0.812412 AAGTGGACACAAACCGGACG 60.812 55.000 9.46 0.00 0.00 4.79
172 173 1.064952 CAAAGTGGACACAAACCGGAC 59.935 52.381 9.46 0.00 0.00 4.79
173 174 1.384525 CAAAGTGGACACAAACCGGA 58.615 50.000 9.46 0.00 0.00 5.14
174 175 0.383949 CCAAAGTGGACACAAACCGG 59.616 55.000 0.00 0.00 40.96 5.28
175 176 1.384525 TCCAAAGTGGACACAAACCG 58.615 50.000 5.14 0.00 42.67 4.44
190 191 0.474614 TGGTCGTGATTTGGGTCCAA 59.525 50.000 0.00 0.00 0.00 3.53
191 192 0.474614 TTGGTCGTGATTTGGGTCCA 59.525 50.000 0.00 0.00 0.00 4.02
192 193 1.611519 TTTGGTCGTGATTTGGGTCC 58.388 50.000 0.00 0.00 0.00 4.46
193 194 3.934457 AATTTGGTCGTGATTTGGGTC 57.066 42.857 0.00 0.00 0.00 4.46
194 195 3.639094 TCAAATTTGGTCGTGATTTGGGT 59.361 39.130 17.90 0.00 39.82 4.51
195 196 4.250116 TCAAATTTGGTCGTGATTTGGG 57.750 40.909 17.90 0.00 39.82 4.12
205 206 4.274459 CCCATCTCTCGATCAAATTTGGTC 59.726 45.833 19.62 19.62 34.98 4.02
206 207 4.202441 CCCATCTCTCGATCAAATTTGGT 58.798 43.478 17.90 11.39 0.00 3.67
207 208 3.567164 CCCCATCTCTCGATCAAATTTGG 59.433 47.826 17.90 2.61 0.00 3.28
208 209 4.202441 ACCCCATCTCTCGATCAAATTTG 58.798 43.478 12.15 12.15 0.00 2.32
209 210 4.080356 TGACCCCATCTCTCGATCAAATTT 60.080 41.667 0.00 0.00 0.00 1.82
210 211 3.455910 TGACCCCATCTCTCGATCAAATT 59.544 43.478 0.00 0.00 0.00 1.82
211 212 3.041211 TGACCCCATCTCTCGATCAAAT 58.959 45.455 0.00 0.00 0.00 2.32
212 213 2.466846 TGACCCCATCTCTCGATCAAA 58.533 47.619 0.00 0.00 0.00 2.69
213 214 2.159179 TGACCCCATCTCTCGATCAA 57.841 50.000 0.00 0.00 0.00 2.57
214 215 2.159179 TTGACCCCATCTCTCGATCA 57.841 50.000 0.00 0.00 0.00 2.92
215 216 2.224161 CCTTTGACCCCATCTCTCGATC 60.224 54.545 0.00 0.00 0.00 3.69
216 217 1.765314 CCTTTGACCCCATCTCTCGAT 59.235 52.381 0.00 0.00 0.00 3.59
217 218 1.195115 CCTTTGACCCCATCTCTCGA 58.805 55.000 0.00 0.00 0.00 4.04
218 219 0.179000 CCCTTTGACCCCATCTCTCG 59.821 60.000 0.00 0.00 0.00 4.04
219 220 1.210722 GTCCCTTTGACCCCATCTCTC 59.789 57.143 0.00 0.00 38.09 3.20
220 221 1.203492 AGTCCCTTTGACCCCATCTCT 60.203 52.381 0.00 0.00 45.68 3.10
221 222 1.290134 AGTCCCTTTGACCCCATCTC 58.710 55.000 0.00 0.00 45.68 2.75
222 223 2.661176 TAGTCCCTTTGACCCCATCT 57.339 50.000 0.00 0.00 45.68 2.90
223 224 3.732048 TTTAGTCCCTTTGACCCCATC 57.268 47.619 0.00 0.00 45.68 3.51
224 225 4.479156 TTTTTAGTCCCTTTGACCCCAT 57.521 40.909 0.00 0.00 45.68 4.00
225 226 3.975479 TTTTTAGTCCCTTTGACCCCA 57.025 42.857 0.00 0.00 45.68 4.96
242 243 1.560611 CACATGCCCCATCCCATTTTT 59.439 47.619 0.00 0.00 0.00 1.94
243 244 1.205966 CACATGCCCCATCCCATTTT 58.794 50.000 0.00 0.00 0.00 1.82
244 245 0.043032 ACACATGCCCCATCCCATTT 59.957 50.000 0.00 0.00 0.00 2.32
245 246 0.043032 AACACATGCCCCATCCCATT 59.957 50.000 0.00 0.00 0.00 3.16
246 247 0.043032 AAACACATGCCCCATCCCAT 59.957 50.000 0.00 0.00 0.00 4.00
247 248 0.903924 CAAACACATGCCCCATCCCA 60.904 55.000 0.00 0.00 0.00 4.37
248 249 1.616091 CCAAACACATGCCCCATCCC 61.616 60.000 0.00 0.00 0.00 3.85
249 250 1.616091 CCCAAACACATGCCCCATCC 61.616 60.000 0.00 0.00 0.00 3.51
250 251 0.904394 ACCCAAACACATGCCCCATC 60.904 55.000 0.00 0.00 0.00 3.51
251 252 0.904394 GACCCAAACACATGCCCCAT 60.904 55.000 0.00 0.00 0.00 4.00
252 253 1.532794 GACCCAAACACATGCCCCA 60.533 57.895 0.00 0.00 0.00 4.96
253 254 1.532794 TGACCCAAACACATGCCCC 60.533 57.895 0.00 0.00 0.00 5.80
254 255 1.112315 TGTGACCCAAACACATGCCC 61.112 55.000 0.00 0.00 42.20 5.36
255 256 2.424474 TGTGACCCAAACACATGCC 58.576 52.632 0.00 0.00 42.20 4.40
260 261 4.097892 AGACAGAAAATGTGACCCAAACAC 59.902 41.667 0.00 0.00 44.17 3.32
261 262 4.277476 AGACAGAAAATGTGACCCAAACA 58.723 39.130 0.00 0.00 44.17 2.83
262 263 4.918810 AGACAGAAAATGTGACCCAAAC 57.081 40.909 0.00 0.00 44.17 2.93
263 264 7.432869 CAAATAGACAGAAAATGTGACCCAAA 58.567 34.615 0.00 0.00 44.17 3.28
264 265 6.516527 GCAAATAGACAGAAAATGTGACCCAA 60.517 38.462 0.00 0.00 44.17 4.12
265 266 5.048083 GCAAATAGACAGAAAATGTGACCCA 60.048 40.000 0.00 0.00 44.17 4.51
266 267 5.183904 AGCAAATAGACAGAAAATGTGACCC 59.816 40.000 0.00 0.00 44.17 4.46
267 268 6.259550 AGCAAATAGACAGAAAATGTGACC 57.740 37.500 0.00 0.00 44.17 4.02
268 269 7.362662 TGAAGCAAATAGACAGAAAATGTGAC 58.637 34.615 0.00 0.00 44.17 3.67
269 270 7.509141 TGAAGCAAATAGACAGAAAATGTGA 57.491 32.000 0.00 0.00 44.17 3.58
270 271 8.578308 TTTGAAGCAAATAGACAGAAAATGTG 57.422 30.769 0.00 0.00 44.17 3.21
271 272 8.416329 ACTTTGAAGCAAATAGACAGAAAATGT 58.584 29.630 0.00 0.00 37.51 2.71
272 273 8.697067 CACTTTGAAGCAAATAGACAGAAAATG 58.303 33.333 0.00 0.00 32.70 2.32
273 274 8.416329 ACACTTTGAAGCAAATAGACAGAAAAT 58.584 29.630 0.00 0.00 32.70 1.82
274 275 7.701924 CACACTTTGAAGCAAATAGACAGAAAA 59.298 33.333 0.00 0.00 32.70 2.29
275 276 7.195646 CACACTTTGAAGCAAATAGACAGAAA 58.804 34.615 0.00 0.00 32.70 2.52
276 277 6.238731 CCACACTTTGAAGCAAATAGACAGAA 60.239 38.462 0.00 0.00 32.70 3.02
277 278 5.239306 CCACACTTTGAAGCAAATAGACAGA 59.761 40.000 0.00 0.00 32.70 3.41
278 279 5.239306 TCCACACTTTGAAGCAAATAGACAG 59.761 40.000 0.00 0.00 32.70 3.51
279 280 5.008613 GTCCACACTTTGAAGCAAATAGACA 59.991 40.000 0.00 0.00 32.70 3.41
280 281 5.008613 TGTCCACACTTTGAAGCAAATAGAC 59.991 40.000 0.00 0.00 32.70 2.59
281 282 5.008613 GTGTCCACACTTTGAAGCAAATAGA 59.991 40.000 2.41 0.00 43.25 1.98
282 283 5.215160 GTGTCCACACTTTGAAGCAAATAG 58.785 41.667 2.41 0.00 43.25 1.73
283 284 4.642437 TGTGTCCACACTTTGAAGCAAATA 59.358 37.500 11.07 0.00 46.55 1.40
284 285 3.446873 TGTGTCCACACTTTGAAGCAAAT 59.553 39.130 11.07 0.00 46.55 2.32
285 286 2.822561 TGTGTCCACACTTTGAAGCAAA 59.177 40.909 11.07 0.00 46.55 3.68
286 287 2.441410 TGTGTCCACACTTTGAAGCAA 58.559 42.857 11.07 0.00 46.55 3.91
287 288 2.121291 TGTGTCCACACTTTGAAGCA 57.879 45.000 11.07 0.00 46.55 3.91
298 299 4.082787 CCCATTTTATCTGTGTGTGTCCAC 60.083 45.833 0.00 0.00 42.19 4.02
299 300 4.078537 CCCATTTTATCTGTGTGTGTCCA 58.921 43.478 0.00 0.00 0.00 4.02
300 301 4.331968 TCCCATTTTATCTGTGTGTGTCC 58.668 43.478 0.00 0.00 0.00 4.02
301 302 5.882557 AGATCCCATTTTATCTGTGTGTGTC 59.117 40.000 0.00 0.00 31.25 3.67
302 303 5.819991 AGATCCCATTTTATCTGTGTGTGT 58.180 37.500 0.00 0.00 31.25 3.72
303 304 6.017605 GCTAGATCCCATTTTATCTGTGTGTG 60.018 42.308 0.00 0.00 34.36 3.82
304 305 6.058183 GCTAGATCCCATTTTATCTGTGTGT 58.942 40.000 0.00 0.00 34.36 3.72
305 306 6.057533 TGCTAGATCCCATTTTATCTGTGTG 58.942 40.000 0.00 0.00 34.36 3.82
306 307 6.252599 TGCTAGATCCCATTTTATCTGTGT 57.747 37.500 0.00 0.00 34.36 3.72
307 308 7.309012 CCAATGCTAGATCCCATTTTATCTGTG 60.309 40.741 0.00 0.00 34.36 3.66
308 309 6.718454 CCAATGCTAGATCCCATTTTATCTGT 59.282 38.462 0.00 0.00 34.36 3.41
309 310 6.944290 TCCAATGCTAGATCCCATTTTATCTG 59.056 38.462 0.00 0.00 34.36 2.90
310 311 7.095183 TCCAATGCTAGATCCCATTTTATCT 57.905 36.000 0.00 0.00 36.45 1.98
311 312 6.944862 ACTCCAATGCTAGATCCCATTTTATC 59.055 38.462 0.00 0.00 29.71 1.75
312 313 6.856757 ACTCCAATGCTAGATCCCATTTTAT 58.143 36.000 0.00 0.00 29.71 1.40
313 314 6.266131 ACTCCAATGCTAGATCCCATTTTA 57.734 37.500 0.00 0.00 29.71 1.52
314 315 5.134725 ACTCCAATGCTAGATCCCATTTT 57.865 39.130 0.00 0.00 29.71 1.82
315 316 4.803329 ACTCCAATGCTAGATCCCATTT 57.197 40.909 0.00 0.00 29.71 2.32
316 317 4.467769 CAACTCCAATGCTAGATCCCATT 58.532 43.478 0.00 0.00 32.20 3.16
317 318 3.181436 CCAACTCCAATGCTAGATCCCAT 60.181 47.826 0.00 0.00 0.00 4.00
318 319 2.173356 CCAACTCCAATGCTAGATCCCA 59.827 50.000 0.00 0.00 0.00 4.37
319 320 2.856222 CCAACTCCAATGCTAGATCCC 58.144 52.381 0.00 0.00 0.00 3.85
320 321 2.225467 GCCAACTCCAATGCTAGATCC 58.775 52.381 0.00 0.00 0.00 3.36
321 322 2.158696 AGGCCAACTCCAATGCTAGATC 60.159 50.000 5.01 0.00 0.00 2.75
322 323 1.849039 AGGCCAACTCCAATGCTAGAT 59.151 47.619 5.01 0.00 0.00 1.98
323 324 1.065199 CAGGCCAACTCCAATGCTAGA 60.065 52.381 5.01 0.00 0.00 2.43
324 325 1.065199 TCAGGCCAACTCCAATGCTAG 60.065 52.381 5.01 0.00 0.00 3.42
325 326 0.991146 TCAGGCCAACTCCAATGCTA 59.009 50.000 5.01 0.00 0.00 3.49
326 327 0.323178 CTCAGGCCAACTCCAATGCT 60.323 55.000 5.01 0.00 0.00 3.79
327 328 1.941999 GCTCAGGCCAACTCCAATGC 61.942 60.000 5.01 0.00 0.00 3.56
328 329 2.187073 GCTCAGGCCAACTCCAATG 58.813 57.895 5.01 0.00 0.00 2.82
329 330 4.751431 GCTCAGGCCAACTCCAAT 57.249 55.556 5.01 0.00 0.00 3.16
340 341 1.678635 TGAATTTGGCCGGCTCAGG 60.679 57.895 28.56 0.00 0.00 3.86
341 342 0.962356 AGTGAATTTGGCCGGCTCAG 60.962 55.000 28.56 0.00 0.00 3.35
342 343 1.074775 AGTGAATTTGGCCGGCTCA 59.925 52.632 28.56 19.10 0.00 4.26
343 344 1.244019 ACAGTGAATTTGGCCGGCTC 61.244 55.000 28.56 16.37 0.00 4.70
344 345 0.827507 AACAGTGAATTTGGCCGGCT 60.828 50.000 28.56 5.35 0.00 5.52
345 346 0.388520 GAACAGTGAATTTGGCCGGC 60.389 55.000 21.18 21.18 0.00 6.13
346 347 1.068333 CAGAACAGTGAATTTGGCCGG 60.068 52.381 0.00 0.00 0.00 6.13
347 348 1.879380 TCAGAACAGTGAATTTGGCCG 59.121 47.619 0.00 0.00 0.00 6.13
348 349 2.029918 GGTCAGAACAGTGAATTTGGCC 60.030 50.000 0.00 0.00 0.00 5.36
349 350 2.029918 GGGTCAGAACAGTGAATTTGGC 60.030 50.000 0.00 0.00 0.00 4.52
350 351 3.490348 AGGGTCAGAACAGTGAATTTGG 58.510 45.455 0.00 0.00 0.00 3.28
351 352 6.615088 CATAAGGGTCAGAACAGTGAATTTG 58.385 40.000 0.00 0.00 0.00 2.32
352 353 5.183904 GCATAAGGGTCAGAACAGTGAATTT 59.816 40.000 0.00 0.00 0.00 1.82
353 354 4.702131 GCATAAGGGTCAGAACAGTGAATT 59.298 41.667 0.00 0.00 0.00 2.17
354 355 4.265073 GCATAAGGGTCAGAACAGTGAAT 58.735 43.478 0.00 0.00 0.00 2.57
355 356 3.674997 GCATAAGGGTCAGAACAGTGAA 58.325 45.455 0.00 0.00 0.00 3.18
356 357 2.353704 CGCATAAGGGTCAGAACAGTGA 60.354 50.000 0.00 0.00 0.00 3.41
357 358 2.002586 CGCATAAGGGTCAGAACAGTG 58.997 52.381 0.00 0.00 0.00 3.66
358 359 1.899814 TCGCATAAGGGTCAGAACAGT 59.100 47.619 0.00 0.00 0.00 3.55
359 360 2.672961 TCGCATAAGGGTCAGAACAG 57.327 50.000 0.00 0.00 0.00 3.16
360 361 3.244422 ACTTTCGCATAAGGGTCAGAACA 60.244 43.478 0.00 0.00 0.00 3.18
361 362 3.335579 ACTTTCGCATAAGGGTCAGAAC 58.664 45.455 0.54 0.00 0.00 3.01
362 363 3.695830 ACTTTCGCATAAGGGTCAGAA 57.304 42.857 0.54 0.00 0.00 3.02
363 364 3.695830 AACTTTCGCATAAGGGTCAGA 57.304 42.857 0.54 0.00 0.00 3.27
364 365 4.094442 GGTAAACTTTCGCATAAGGGTCAG 59.906 45.833 0.54 0.00 0.00 3.51
365 366 4.004982 GGTAAACTTTCGCATAAGGGTCA 58.995 43.478 0.54 0.00 0.00 4.02
366 367 4.004982 TGGTAAACTTTCGCATAAGGGTC 58.995 43.478 0.54 0.00 0.00 4.46
367 368 3.754850 GTGGTAAACTTTCGCATAAGGGT 59.245 43.478 0.54 0.00 0.00 4.34
368 369 3.181514 CGTGGTAAACTTTCGCATAAGGG 60.182 47.826 0.54 0.00 0.00 3.95
369 370 3.680937 TCGTGGTAAACTTTCGCATAAGG 59.319 43.478 0.54 0.00 0.00 2.69
370 371 4.914312 TCGTGGTAAACTTTCGCATAAG 57.086 40.909 0.00 0.00 0.00 1.73
371 372 5.866335 AATCGTGGTAAACTTTCGCATAA 57.134 34.783 0.00 0.00 0.00 1.90
372 373 5.408909 TCAAATCGTGGTAAACTTTCGCATA 59.591 36.000 0.00 0.00 0.00 3.14
373 374 4.214545 TCAAATCGTGGTAAACTTTCGCAT 59.785 37.500 0.00 0.00 0.00 4.73
374 375 3.560481 TCAAATCGTGGTAAACTTTCGCA 59.440 39.130 0.00 0.00 0.00 5.10
375 376 3.904234 GTCAAATCGTGGTAAACTTTCGC 59.096 43.478 0.00 0.00 0.00 4.70
376 377 4.024725 TGGTCAAATCGTGGTAAACTTTCG 60.025 41.667 0.00 0.00 0.00 3.46
377 378 5.427036 TGGTCAAATCGTGGTAAACTTTC 57.573 39.130 0.00 0.00 0.00 2.62
378 379 7.696992 ATATGGTCAAATCGTGGTAAACTTT 57.303 32.000 0.00 0.00 0.00 2.66
379 380 7.413657 CGAATATGGTCAAATCGTGGTAAACTT 60.414 37.037 0.00 0.00 0.00 2.66
380 381 6.036735 CGAATATGGTCAAATCGTGGTAAACT 59.963 38.462 0.00 0.00 0.00 2.66
381 382 6.183360 ACGAATATGGTCAAATCGTGGTAAAC 60.183 38.462 0.00 0.00 44.20 2.01
382 383 5.875910 ACGAATATGGTCAAATCGTGGTAAA 59.124 36.000 0.00 0.00 44.20 2.01
383 384 5.421277 ACGAATATGGTCAAATCGTGGTAA 58.579 37.500 0.00 0.00 44.20 2.85
384 385 5.013568 ACGAATATGGTCAAATCGTGGTA 57.986 39.130 0.00 0.00 44.20 3.25
385 386 3.869065 ACGAATATGGTCAAATCGTGGT 58.131 40.909 0.00 0.00 44.20 4.16
386 387 5.977171 TTACGAATATGGTCAAATCGTGG 57.023 39.130 9.14 0.00 45.30 4.94
408 409 9.671279 AGAAAAATGGTCAGATTCAAACTTTTT 57.329 25.926 0.00 0.00 0.00 1.94
410 411 9.750125 GTAGAAAAATGGTCAGATTCAAACTTT 57.250 29.630 0.00 0.00 0.00 2.66
411 412 8.360390 GGTAGAAAAATGGTCAGATTCAAACTT 58.640 33.333 0.00 0.00 0.00 2.66
412 413 7.505585 TGGTAGAAAAATGGTCAGATTCAAACT 59.494 33.333 0.00 0.00 0.00 2.66
413 414 7.657336 TGGTAGAAAAATGGTCAGATTCAAAC 58.343 34.615 0.00 0.00 0.00 2.93
414 415 7.831691 TGGTAGAAAAATGGTCAGATTCAAA 57.168 32.000 0.00 0.00 0.00 2.69
415 416 7.669304 TGATGGTAGAAAAATGGTCAGATTCAA 59.331 33.333 0.00 0.00 0.00 2.69
416 417 7.174413 TGATGGTAGAAAAATGGTCAGATTCA 58.826 34.615 0.00 0.00 0.00 2.57
417 418 7.630242 TGATGGTAGAAAAATGGTCAGATTC 57.370 36.000 0.00 0.00 0.00 2.52
418 419 9.347240 CTATGATGGTAGAAAAATGGTCAGATT 57.653 33.333 0.00 0.00 0.00 2.40
419 420 8.717717 TCTATGATGGTAGAAAAATGGTCAGAT 58.282 33.333 0.00 0.00 0.00 2.90
420 421 8.089625 TCTATGATGGTAGAAAAATGGTCAGA 57.910 34.615 0.00 0.00 0.00 3.27
421 422 8.781196 CATCTATGATGGTAGAAAAATGGTCAG 58.219 37.037 0.00 0.00 34.59 3.51
422 423 8.274322 ACATCTATGATGGTAGAAAAATGGTCA 58.726 33.333 11.55 0.00 34.59 4.02
423 424 8.682936 ACATCTATGATGGTAGAAAAATGGTC 57.317 34.615 11.55 0.00 34.59 4.02
424 425 8.906867 CAACATCTATGATGGTAGAAAAATGGT 58.093 33.333 11.55 0.00 34.59 3.55
425 426 8.355169 CCAACATCTATGATGGTAGAAAAATGG 58.645 37.037 10.29 0.00 43.40 3.16
437 438 3.750130 GCCTACTGCCAACATCTATGATG 59.250 47.826 6.06 6.06 0.00 3.07
438 439 3.649981 AGCCTACTGCCAACATCTATGAT 59.350 43.478 0.00 0.00 42.71 2.45
439 440 3.041211 AGCCTACTGCCAACATCTATGA 58.959 45.455 0.00 0.00 42.71 2.15
440 441 3.482156 AGCCTACTGCCAACATCTATG 57.518 47.619 0.00 0.00 42.71 2.23
441 442 4.510167 AAAGCCTACTGCCAACATCTAT 57.490 40.909 0.00 0.00 42.71 1.98
442 443 4.009675 CAAAAGCCTACTGCCAACATCTA 58.990 43.478 0.00 0.00 42.71 1.98
443 444 2.821969 CAAAAGCCTACTGCCAACATCT 59.178 45.455 0.00 0.00 42.71 2.90
444 445 2.094545 CCAAAAGCCTACTGCCAACATC 60.095 50.000 0.00 0.00 42.71 3.06
445 446 1.895131 CCAAAAGCCTACTGCCAACAT 59.105 47.619 0.00 0.00 42.71 2.71
446 447 1.327303 CCAAAAGCCTACTGCCAACA 58.673 50.000 0.00 0.00 42.71 3.33
447 448 1.269723 GACCAAAAGCCTACTGCCAAC 59.730 52.381 0.00 0.00 42.71 3.77
448 449 1.133637 TGACCAAAAGCCTACTGCCAA 60.134 47.619 0.00 0.00 42.71 4.52
449 450 0.476338 TGACCAAAAGCCTACTGCCA 59.524 50.000 0.00 0.00 42.71 4.92
450 451 1.269723 GTTGACCAAAAGCCTACTGCC 59.730 52.381 0.00 0.00 42.71 4.85
451 452 1.953686 TGTTGACCAAAAGCCTACTGC 59.046 47.619 0.00 0.00 41.71 4.40
452 453 5.957842 TTATGTTGACCAAAAGCCTACTG 57.042 39.130 0.00 0.00 0.00 2.74
453 454 6.151144 GTCATTATGTTGACCAAAAGCCTACT 59.849 38.462 0.00 0.00 40.11 2.57
454 455 6.072175 TGTCATTATGTTGACCAAAAGCCTAC 60.072 38.462 7.22 0.00 44.37 3.18
455 456 6.007076 TGTCATTATGTTGACCAAAAGCCTA 58.993 36.000 7.22 0.00 44.37 3.93
456 457 4.832266 TGTCATTATGTTGACCAAAAGCCT 59.168 37.500 7.22 0.00 44.37 4.58
457 458 5.132897 TGTCATTATGTTGACCAAAAGCC 57.867 39.130 7.22 0.00 44.37 4.35
458 459 5.577945 CCATGTCATTATGTTGACCAAAAGC 59.422 40.000 7.22 0.00 44.37 3.51
459 460 5.577945 GCCATGTCATTATGTTGACCAAAAG 59.422 40.000 7.22 0.00 44.37 2.27
460 461 5.011431 TGCCATGTCATTATGTTGACCAAAA 59.989 36.000 7.22 0.00 44.37 2.44
461 462 4.525874 TGCCATGTCATTATGTTGACCAAA 59.474 37.500 7.22 0.00 44.37 3.28
462 463 4.085009 TGCCATGTCATTATGTTGACCAA 58.915 39.130 7.22 0.00 44.37 3.67
463 464 3.694926 TGCCATGTCATTATGTTGACCA 58.305 40.909 7.22 0.00 44.37 4.02
464 465 4.717233 TTGCCATGTCATTATGTTGACC 57.283 40.909 7.22 0.00 44.37 4.02
465 466 5.893687 TCATTGCCATGTCATTATGTTGAC 58.106 37.500 0.00 3.57 45.05 3.18
466 467 6.718522 ATCATTGCCATGTCATTATGTTGA 57.281 33.333 0.00 0.00 0.00 3.18
467 468 6.201997 CCAATCATTGCCATGTCATTATGTTG 59.798 38.462 0.00 0.00 0.00 3.33
468 469 6.285224 CCAATCATTGCCATGTCATTATGTT 58.715 36.000 0.00 0.00 0.00 2.71
469 470 5.740803 GCCAATCATTGCCATGTCATTATGT 60.741 40.000 0.00 0.00 0.00 2.29
470 471 4.688879 GCCAATCATTGCCATGTCATTATG 59.311 41.667 0.00 0.00 0.00 1.90
471 472 4.345547 TGCCAATCATTGCCATGTCATTAT 59.654 37.500 0.00 0.00 0.00 1.28
472 473 3.705072 TGCCAATCATTGCCATGTCATTA 59.295 39.130 0.00 0.00 0.00 1.90
473 474 2.502130 TGCCAATCATTGCCATGTCATT 59.498 40.909 0.00 0.00 0.00 2.57
474 475 2.112190 TGCCAATCATTGCCATGTCAT 58.888 42.857 0.00 0.00 0.00 3.06
475 476 1.558233 TGCCAATCATTGCCATGTCA 58.442 45.000 0.00 0.00 0.00 3.58
476 477 2.093869 ACTTGCCAATCATTGCCATGTC 60.094 45.455 0.00 0.00 0.00 3.06
477 478 1.903860 ACTTGCCAATCATTGCCATGT 59.096 42.857 0.00 0.00 0.00 3.21
478 479 2.276201 CACTTGCCAATCATTGCCATG 58.724 47.619 0.00 0.00 0.00 3.66
479 480 1.208535 CCACTTGCCAATCATTGCCAT 59.791 47.619 0.00 0.00 0.00 4.40
480 481 0.609151 CCACTTGCCAATCATTGCCA 59.391 50.000 0.00 0.00 0.00 4.92
481 482 0.741927 GCCACTTGCCAATCATTGCC 60.742 55.000 0.00 0.00 0.00 4.52
482 483 1.079875 CGCCACTTGCCAATCATTGC 61.080 55.000 0.00 0.00 36.24 3.56
483 484 0.527113 TCGCCACTTGCCAATCATTG 59.473 50.000 0.00 0.00 36.24 2.82
484 485 0.527565 GTCGCCACTTGCCAATCATT 59.472 50.000 0.00 0.00 36.24 2.57
485 486 1.315257 GGTCGCCACTTGCCAATCAT 61.315 55.000 0.00 0.00 36.24 2.45
486 487 1.971167 GGTCGCCACTTGCCAATCA 60.971 57.895 0.00 0.00 36.24 2.57
487 488 0.392461 TAGGTCGCCACTTGCCAATC 60.392 55.000 0.00 0.00 36.24 2.67
488 489 0.392998 CTAGGTCGCCACTTGCCAAT 60.393 55.000 0.00 0.00 36.24 3.16
489 490 1.003839 CTAGGTCGCCACTTGCCAA 60.004 57.895 0.00 0.00 36.24 4.52
490 491 2.662596 CTAGGTCGCCACTTGCCA 59.337 61.111 0.00 0.00 36.24 4.92
491 492 2.125106 CCTAGGTCGCCACTTGCC 60.125 66.667 0.00 0.00 36.24 4.52
492 493 2.820037 GCCTAGGTCGCCACTTGC 60.820 66.667 11.31 0.00 0.00 4.01
493 494 2.125106 GGCCTAGGTCGCCACTTG 60.125 66.667 11.31 0.00 46.27 3.16
498 499 1.669999 TTACTTCGGCCTAGGTCGCC 61.670 60.000 30.89 14.54 43.58 5.54
499 500 0.174162 TTTACTTCGGCCTAGGTCGC 59.826 55.000 30.89 5.85 43.58 5.19
500 501 2.470821 CATTTACTTCGGCCTAGGTCG 58.529 52.381 29.94 29.94 45.47 4.79
501 502 2.158943 AGCATTTACTTCGGCCTAGGTC 60.159 50.000 11.31 7.06 0.00 3.85
502 503 1.838077 AGCATTTACTTCGGCCTAGGT 59.162 47.619 11.31 0.00 0.00 3.08
503 504 2.622064 AGCATTTACTTCGGCCTAGG 57.378 50.000 3.67 3.67 0.00 3.02
504 505 7.907214 ATTTATAGCATTTACTTCGGCCTAG 57.093 36.000 0.00 0.00 0.00 3.02
505 506 9.953565 ATTATTTATAGCATTTACTTCGGCCTA 57.046 29.630 0.00 0.00 0.00 3.93
506 507 8.730680 CATTATTTATAGCATTTACTTCGGCCT 58.269 33.333 0.00 0.00 0.00 5.19
507 508 8.512138 ACATTATTTATAGCATTTACTTCGGCC 58.488 33.333 0.00 0.00 0.00 6.13
508 509 9.329913 CACATTATTTATAGCATTTACTTCGGC 57.670 33.333 0.00 0.00 0.00 5.54
509 510 9.825972 CCACATTATTTATAGCATTTACTTCGG 57.174 33.333 0.00 0.00 0.00 4.30
514 515 9.490663 GCGATCCACATTATTTATAGCATTTAC 57.509 33.333 0.00 0.00 0.00 2.01
515 516 8.673711 GGCGATCCACATTATTTATAGCATTTA 58.326 33.333 0.00 0.00 0.00 1.40
516 517 7.362920 GGGCGATCCACATTATTTATAGCATTT 60.363 37.037 0.00 0.00 35.00 2.32
517 518 6.095440 GGGCGATCCACATTATTTATAGCATT 59.905 38.462 0.00 0.00 35.00 3.56
518 519 5.590259 GGGCGATCCACATTATTTATAGCAT 59.410 40.000 0.00 0.00 35.00 3.79
519 520 4.941263 GGGCGATCCACATTATTTATAGCA 59.059 41.667 0.00 0.00 35.00 3.49
520 521 4.941263 TGGGCGATCCACATTATTTATAGC 59.059 41.667 0.00 0.00 41.46 2.97
521 522 6.173339 ACTGGGCGATCCACATTATTTATAG 58.827 40.000 0.00 0.00 41.46 1.31
522 523 6.121776 ACTGGGCGATCCACATTATTTATA 57.878 37.500 0.00 0.00 41.46 0.98
523 524 4.985538 ACTGGGCGATCCACATTATTTAT 58.014 39.130 0.00 0.00 41.46 1.40
524 525 4.431416 ACTGGGCGATCCACATTATTTA 57.569 40.909 0.00 0.00 41.46 1.40
525 526 3.297134 ACTGGGCGATCCACATTATTT 57.703 42.857 0.00 0.00 41.46 1.40
526 527 3.391296 ACTACTGGGCGATCCACATTATT 59.609 43.478 0.00 0.00 41.46 1.40
527 528 2.972713 ACTACTGGGCGATCCACATTAT 59.027 45.455 0.00 0.00 41.46 1.28
528 529 2.394632 ACTACTGGGCGATCCACATTA 58.605 47.619 0.00 0.00 41.46 1.90
529 530 1.204146 ACTACTGGGCGATCCACATT 58.796 50.000 0.00 0.00 41.46 2.71
530 531 1.687123 GTACTACTGGGCGATCCACAT 59.313 52.381 0.00 0.00 41.46 3.21
531 532 1.108776 GTACTACTGGGCGATCCACA 58.891 55.000 0.00 0.00 41.46 4.17
532 533 1.400737 AGTACTACTGGGCGATCCAC 58.599 55.000 0.00 0.00 41.46 4.02
533 534 3.301794 TTAGTACTACTGGGCGATCCA 57.698 47.619 0.91 0.00 44.79 3.41
534 535 3.635836 AGTTTAGTACTACTGGGCGATCC 59.364 47.826 0.91 0.00 34.56 3.36
535 536 4.608951 CAGTTTAGTACTACTGGGCGATC 58.391 47.826 15.37 0.00 38.44 3.69
536 537 3.181478 GCAGTTTAGTACTACTGGGCGAT 60.181 47.826 21.75 0.00 41.56 4.58
537 538 2.165030 GCAGTTTAGTACTACTGGGCGA 59.835 50.000 21.75 0.00 41.56 5.54
538 539 2.165845 AGCAGTTTAGTACTACTGGGCG 59.834 50.000 21.75 3.17 41.56 6.13
539 540 3.889520 AGCAGTTTAGTACTACTGGGC 57.110 47.619 21.75 14.69 41.56 5.36
540 541 4.157289 TCGAAGCAGTTTAGTACTACTGGG 59.843 45.833 21.75 7.06 41.56 4.45
541 542 5.306532 TCGAAGCAGTTTAGTACTACTGG 57.693 43.478 21.75 9.53 41.56 4.00
542 543 5.744345 CCATCGAAGCAGTTTAGTACTACTG 59.256 44.000 17.90 17.90 43.58 2.74
543 544 5.679127 GCCATCGAAGCAGTTTAGTACTACT 60.679 44.000 0.91 0.00 34.56 2.57
544 545 4.503370 GCCATCGAAGCAGTTTAGTACTAC 59.497 45.833 0.91 0.00 34.56 2.73
545 546 4.401519 AGCCATCGAAGCAGTTTAGTACTA 59.598 41.667 12.70 0.00 34.56 1.82
546 547 3.195825 AGCCATCGAAGCAGTTTAGTACT 59.804 43.478 12.70 0.00 37.68 2.73
547 548 3.307242 CAGCCATCGAAGCAGTTTAGTAC 59.693 47.826 12.70 0.00 0.00 2.73
548 549 3.521560 CAGCCATCGAAGCAGTTTAGTA 58.478 45.455 12.70 0.00 0.00 1.82
549 550 2.350522 CAGCCATCGAAGCAGTTTAGT 58.649 47.619 12.70 0.00 0.00 2.24
550 551 1.667724 CCAGCCATCGAAGCAGTTTAG 59.332 52.381 12.70 0.00 0.00 1.85
551 552 1.737838 CCAGCCATCGAAGCAGTTTA 58.262 50.000 12.70 0.00 0.00 2.01
552 553 1.589716 GCCAGCCATCGAAGCAGTTT 61.590 55.000 12.70 0.00 0.00 2.66
553 554 2.042831 GCCAGCCATCGAAGCAGTT 61.043 57.895 12.70 0.00 0.00 3.16
554 555 2.437359 GCCAGCCATCGAAGCAGT 60.437 61.111 12.70 0.00 0.00 4.40
555 556 2.124819 AGCCAGCCATCGAAGCAG 60.125 61.111 12.70 5.09 0.00 4.24
556 557 2.437180 CAGCCAGCCATCGAAGCA 60.437 61.111 12.70 0.00 0.00 3.91
557 558 3.207669 CCAGCCAGCCATCGAAGC 61.208 66.667 2.71 2.71 0.00 3.86
558 559 0.107703 TAACCAGCCAGCCATCGAAG 60.108 55.000 0.00 0.00 0.00 3.79
559 560 0.107703 CTAACCAGCCAGCCATCGAA 60.108 55.000 0.00 0.00 0.00 3.71
560 561 1.522092 CTAACCAGCCAGCCATCGA 59.478 57.895 0.00 0.00 0.00 3.59
561 562 1.524621 CCTAACCAGCCAGCCATCG 60.525 63.158 0.00 0.00 0.00 3.84
562 563 1.152881 CCCTAACCAGCCAGCCATC 60.153 63.158 0.00 0.00 0.00 3.51
563 564 3.010144 CCCTAACCAGCCAGCCAT 58.990 61.111 0.00 0.00 0.00 4.40
564 565 4.047125 GCCCTAACCAGCCAGCCA 62.047 66.667 0.00 0.00 0.00 4.75
566 567 4.410400 ACGCCCTAACCAGCCAGC 62.410 66.667 0.00 0.00 0.00 4.85
567 568 2.436646 CACGCCCTAACCAGCCAG 60.437 66.667 0.00 0.00 0.00 4.85
568 569 4.715523 GCACGCCCTAACCAGCCA 62.716 66.667 0.00 0.00 0.00 4.75
569 570 4.410400 AGCACGCCCTAACCAGCC 62.410 66.667 0.00 0.00 0.00 4.85
570 571 2.820037 GAGCACGCCCTAACCAGC 60.820 66.667 0.00 0.00 0.00 4.85
571 572 2.509336 CGAGCACGCCCTAACCAG 60.509 66.667 0.00 0.00 0.00 4.00
572 573 1.534336 TAACGAGCACGCCCTAACCA 61.534 55.000 2.62 0.00 43.96 3.67
573 574 0.804933 CTAACGAGCACGCCCTAACC 60.805 60.000 2.62 0.00 43.96 2.85
574 575 2.662150 CTAACGAGCACGCCCTAAC 58.338 57.895 2.62 0.00 43.96 2.34
596 597 6.980397 GCAAATATCAAACCAAAGACCTATGG 59.020 38.462 0.00 0.00 42.60 2.74
597 598 6.980397 GGCAAATATCAAACCAAAGACCTATG 59.020 38.462 0.00 0.00 0.00 2.23
598 599 6.667414 TGGCAAATATCAAACCAAAGACCTAT 59.333 34.615 0.00 0.00 0.00 2.57
599 600 6.013379 TGGCAAATATCAAACCAAAGACCTA 58.987 36.000 0.00 0.00 0.00 3.08
600 601 4.837860 TGGCAAATATCAAACCAAAGACCT 59.162 37.500 0.00 0.00 0.00 3.85
601 602 5.146010 TGGCAAATATCAAACCAAAGACC 57.854 39.130 0.00 0.00 0.00 3.85
602 603 5.639082 CCTTGGCAAATATCAAACCAAAGAC 59.361 40.000 0.00 0.00 39.76 3.01
603 604 5.541868 TCCTTGGCAAATATCAAACCAAAGA 59.458 36.000 0.00 0.00 39.76 2.52
604 605 5.639082 GTCCTTGGCAAATATCAAACCAAAG 59.361 40.000 0.00 0.00 39.76 2.77
605 606 5.070981 TGTCCTTGGCAAATATCAAACCAAA 59.929 36.000 0.00 0.00 39.76 3.28
606 607 4.590647 TGTCCTTGGCAAATATCAAACCAA 59.409 37.500 0.00 0.00 38.04 3.67
607 608 4.155709 TGTCCTTGGCAAATATCAAACCA 58.844 39.130 0.00 0.00 0.00 3.67
608 609 4.799564 TGTCCTTGGCAAATATCAAACC 57.200 40.909 0.00 0.00 0.00 3.27
648 649 8.378565 CCTATATAGAGAGAGATTGGGCAAAAA 58.621 37.037 11.53 0.00 0.00 1.94
649 650 7.734865 TCCTATATAGAGAGAGATTGGGCAAAA 59.265 37.037 11.53 0.00 0.00 2.44
650 651 7.248976 TCCTATATAGAGAGAGATTGGGCAAA 58.751 38.462 11.53 0.00 0.00 3.68
651 652 6.805150 TCCTATATAGAGAGAGATTGGGCAA 58.195 40.000 11.53 0.00 0.00 4.52
652 653 6.011185 ACTCCTATATAGAGAGAGATTGGGCA 60.011 42.308 23.89 0.00 35.27 5.36
653 654 6.431722 ACTCCTATATAGAGAGAGATTGGGC 58.568 44.000 23.89 0.00 35.27 5.36
737 739 4.356436 AGGGGCTTTTCTGCATAAATTCT 58.644 39.130 0.00 0.00 34.04 2.40
786 789 5.617973 GCTCAGTTTAGCCACTTAAAAGAGC 60.618 44.000 13.51 13.51 41.00 4.09
1056 1071 1.562672 ATGCCTTGTTAGTCCCGCCT 61.563 55.000 0.00 0.00 0.00 5.52
2421 3476 7.703621 CCTTGTCAAATACTGAATTAATGCAGG 59.296 37.037 24.53 8.91 35.22 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.