Multiple sequence alignment - TraesCS1A01G379800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G379800 chr1A 100.000 4194 0 0 870 5063 551601664 551605857 0.000000e+00 7745.0
1 TraesCS1A01G379800 chr1A 94.086 930 38 11 907 1833 379646397 379647312 0.000000e+00 1397.0
2 TraesCS1A01G379800 chr1A 100.000 524 0 0 1 524 551600795 551601318 0.000000e+00 968.0
3 TraesCS1A01G379800 chr1A 86.719 128 17 0 4588 4715 551630767 551630894 5.280000e-30 143.0
4 TraesCS1A01G379800 chr1D 94.052 2707 116 21 1906 4588 459887954 459890639 0.000000e+00 4065.0
5 TraesCS1A01G379800 chr1D 90.694 1268 86 15 891 2140 262327715 262326462 0.000000e+00 1659.0
6 TraesCS1A01G379800 chr1D 96.476 908 27 1 2772 3679 262326452 262325550 0.000000e+00 1495.0
7 TraesCS1A01G379800 chr1D 89.286 980 72 16 955 1913 459886769 459887736 0.000000e+00 1197.0
8 TraesCS1A01G379800 chr1D 88.535 785 66 14 3794 4563 262325554 262324779 0.000000e+00 929.0
9 TraesCS1A01G379800 chr1D 91.616 489 20 4 4588 5056 459890686 459891173 0.000000e+00 656.0
10 TraesCS1A01G379800 chr1D 80.529 719 62 29 3769 4480 460144520 460145167 9.860000e-132 481.0
11 TraesCS1A01G379800 chr1D 90.994 322 28 1 52 373 105944545 105944865 2.800000e-117 433.0
12 TraesCS1A01G379800 chr1D 87.273 330 28 8 47 376 105336039 105336354 1.040000e-96 364.0
13 TraesCS1A01G379800 chr1D 92.683 123 5 3 376 497 459886373 459886492 1.870000e-39 174.0
14 TraesCS1A01G379800 chr1B 95.982 2041 63 5 1906 3938 631999359 632001388 0.000000e+00 3297.0
15 TraesCS1A01G379800 chr1B 87.384 967 81 20 943 1883 631998196 631999147 0.000000e+00 1072.0
16 TraesCS1A01G379800 chr1B 86.018 894 73 17 2811 3661 632021331 632022215 0.000000e+00 911.0
17 TraesCS1A01G379800 chr1B 88.012 659 50 12 3937 4589 632001492 632002127 0.000000e+00 752.0
18 TraesCS1A01G379800 chr1B 89.222 501 24 10 4588 5063 632002175 632002670 2.610000e-167 599.0
19 TraesCS1A01G379800 chr1B 86.350 337 23 11 4008 4339 632011514 632011832 3.750000e-91 346.0
20 TraesCS1A01G379800 chr1B 86.290 124 12 3 376 497 631997784 631997904 4.110000e-26 130.0
21 TraesCS1A01G379800 chr1B 86.066 122 10 4 376 497 631975230 631975344 1.910000e-24 124.0
22 TraesCS1A01G379800 chr1B 78.788 198 16 12 3778 3975 632011334 632011505 5.360000e-20 110.0
23 TraesCS1A01G379800 chr2D 90.134 1267 96 17 891 2140 581824917 581826171 0.000000e+00 1620.0
24 TraesCS1A01G379800 chr2D 96.378 911 33 0 2769 3679 581826178 581827088 0.000000e+00 1500.0
25 TraesCS1A01G379800 chr2D 89.130 782 62 12 3794 4560 581827084 581827857 0.000000e+00 952.0
26 TraesCS1A01G379800 chr2D 80.998 421 37 27 1224 1631 374343083 374342693 1.380000e-75 294.0
27 TraesCS1A01G379800 chr2D 98.214 56 1 0 1107 1162 374343170 374343115 1.160000e-16 99.0
28 TraesCS1A01G379800 chr5B 98.133 375 7 0 1 375 661871261 661870887 0.000000e+00 654.0
29 TraesCS1A01G379800 chr5B 91.617 167 9 4 1221 1387 4574508 4574669 5.100000e-55 226.0
30 TraesCS1A01G379800 chr5B 89.062 64 4 2 941 1002 593360979 593361041 5.440000e-10 76.8
31 TraesCS1A01G379800 chr3A 79.524 420 42 28 1224 1631 734197332 734196945 5.030000e-65 259.0
32 TraesCS1A01G379800 chr4A 91.463 164 9 4 1224 1387 22639062 22639220 2.370000e-53 220.0
33 TraesCS1A01G379800 chr5D 76.562 256 44 15 3601 3849 259634120 259634366 5.320000e-25 126.0
34 TraesCS1A01G379800 chr3D 76.172 256 45 15 3601 3849 133676204 133676450 2.480000e-23 121.0
35 TraesCS1A01G379800 chr3D 78.804 184 34 5 3601 3781 119268041 119267860 8.900000e-23 119.0
36 TraesCS1A01G379800 chr7D 78.378 185 37 3 3601 3783 55627850 55627667 3.200000e-22 117.0
37 TraesCS1A01G379800 chr6D 96.429 56 2 0 1107 1162 234472639 234472694 5.400000e-15 93.5
38 TraesCS1A01G379800 chr6B 98.039 51 1 0 952 1002 87005676 87005726 6.980000e-14 89.8
39 TraesCS1A01G379800 chr5A 97.959 49 1 0 954 1002 609688604 609688652 9.030000e-13 86.1
40 TraesCS1A01G379800 chr4B 97.959 49 1 0 954 1002 564753044 564752996 9.030000e-13 86.1
41 TraesCS1A01G379800 chrUn 94.737 38 1 1 345 381 375225 375262 1.970000e-04 58.4
42 TraesCS1A01G379800 chrUn 94.737 38 1 1 345 381 447473 447510 1.970000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G379800 chr1A 551600795 551605857 5062 False 4356.500000 7745 100.000000 1 5063 2 chr1A.!!$F3 5062
1 TraesCS1A01G379800 chr1A 379646397 379647312 915 False 1397.000000 1397 94.086000 907 1833 1 chr1A.!!$F1 926
2 TraesCS1A01G379800 chr1D 459886373 459891173 4800 False 1523.000000 4065 91.909250 376 5056 4 chr1D.!!$F4 4680
3 TraesCS1A01G379800 chr1D 262324779 262327715 2936 True 1361.000000 1659 91.901667 891 4563 3 chr1D.!!$R1 3672
4 TraesCS1A01G379800 chr1D 460144520 460145167 647 False 481.000000 481 80.529000 3769 4480 1 chr1D.!!$F3 711
5 TraesCS1A01G379800 chr1B 631997784 632002670 4886 False 1170.000000 3297 89.378000 376 5063 5 chr1B.!!$F3 4687
6 TraesCS1A01G379800 chr1B 632021331 632022215 884 False 911.000000 911 86.018000 2811 3661 1 chr1B.!!$F2 850
7 TraesCS1A01G379800 chr2D 581824917 581827857 2940 False 1357.333333 1620 91.880667 891 4560 3 chr2D.!!$F1 3669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 327 0.041663 GATCTCGAGGAGAGCGAACG 60.042 60.0 13.56 0.0 46.44 3.95 F
335 336 0.105039 GAGAGCGAACGGGGATGATT 59.895 55.0 0.00 0.0 0.00 2.57 F
336 337 0.105039 AGAGCGAACGGGGATGATTC 59.895 55.0 0.00 0.0 0.00 2.52 F
337 338 0.105039 GAGCGAACGGGGATGATTCT 59.895 55.0 0.00 0.0 0.00 2.40 F
338 339 0.179073 AGCGAACGGGGATGATTCTG 60.179 55.0 0.00 0.0 0.00 3.02 F
341 342 0.179084 GAACGGGGATGATTCTGCGA 60.179 55.0 0.00 0.0 0.00 5.10 F
342 343 0.179073 AACGGGGATGATTCTGCGAG 60.179 55.0 0.00 0.0 0.00 5.03 F
903 922 0.246910 GTCCAGTTCCGTCTTCCTCC 59.753 60.0 0.00 0.0 0.00 4.30 F
2561 2865 0.535102 CTGGTGGAGGCGTCAAGTTT 60.535 55.0 8.91 0.0 0.00 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1464 1502 2.968206 CTGGCCTCTTTTGCTGCC 59.032 61.111 3.32 0.00 44.27 4.85 R
1932 2229 4.877823 CCAAGACAACAGCAGCAATAGATA 59.122 41.667 0.00 0.00 0.00 1.98 R
2147 2446 5.647225 AGTGTAAAAGTAAAACCACGACCAA 59.353 36.000 0.00 0.00 0.00 3.67 R
2223 2522 6.528072 GCTATCCAAACTATGCAGAACAAAAC 59.472 38.462 0.00 0.00 0.00 2.43 R
2281 2585 8.755018 GCCAAATTCTAAATGGATTGTTTATCG 58.245 33.333 0.00 0.00 36.27 2.92 R
2432 2736 1.479323 GCAACCAGATCACTACGGGTA 59.521 52.381 0.00 0.00 35.03 3.69 R
2459 2763 6.128172 CCGGTATTGATTGAATTCTATCAGGC 60.128 42.308 24.80 19.38 38.80 4.85 R
2627 2937 1.064463 GGACTTGGCCAGATCATTCCA 60.064 52.381 17.48 0.00 0.00 3.53 R
4354 4829 0.185901 TGCCACTCAAAGAAAGGCCT 59.814 50.000 0.00 0.00 44.60 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.822026 AGAAGGAGAACTGAACGTATTGG 58.178 43.478 0.00 0.00 0.00 3.16
23 24 2.973945 AGGAGAACTGAACGTATTGGC 58.026 47.619 0.00 0.00 0.00 4.52
24 25 2.007608 GGAGAACTGAACGTATTGGCC 58.992 52.381 0.00 0.00 0.00 5.36
25 26 2.007608 GAGAACTGAACGTATTGGCCC 58.992 52.381 0.00 0.00 0.00 5.80
26 27 1.092348 GAACTGAACGTATTGGCCCC 58.908 55.000 0.00 0.00 0.00 5.80
27 28 0.696501 AACTGAACGTATTGGCCCCT 59.303 50.000 0.00 0.00 0.00 4.79
28 29 0.252197 ACTGAACGTATTGGCCCCTC 59.748 55.000 0.00 0.00 0.00 4.30
29 30 0.251916 CTGAACGTATTGGCCCCTCA 59.748 55.000 0.00 0.00 0.00 3.86
30 31 0.693622 TGAACGTATTGGCCCCTCAA 59.306 50.000 0.00 0.00 0.00 3.02
31 32 1.283613 TGAACGTATTGGCCCCTCAAT 59.716 47.619 0.00 0.00 40.15 2.57
32 33 2.291282 TGAACGTATTGGCCCCTCAATT 60.291 45.455 0.00 0.00 38.24 2.32
33 34 2.525105 ACGTATTGGCCCCTCAATTT 57.475 45.000 0.00 0.00 38.24 1.82
34 35 2.815158 ACGTATTGGCCCCTCAATTTT 58.185 42.857 0.00 0.00 38.24 1.82
35 36 3.970842 ACGTATTGGCCCCTCAATTTTA 58.029 40.909 0.00 0.00 38.24 1.52
36 37 4.542697 ACGTATTGGCCCCTCAATTTTAT 58.457 39.130 0.00 0.00 38.24 1.40
37 38 4.959839 ACGTATTGGCCCCTCAATTTTATT 59.040 37.500 0.00 0.00 38.24 1.40
38 39 5.423931 ACGTATTGGCCCCTCAATTTTATTT 59.576 36.000 0.00 0.00 38.24 1.40
39 40 6.070481 ACGTATTGGCCCCTCAATTTTATTTT 60.070 34.615 0.00 0.00 38.24 1.82
40 41 7.124448 ACGTATTGGCCCCTCAATTTTATTTTA 59.876 33.333 0.00 0.00 38.24 1.52
41 42 8.147704 CGTATTGGCCCCTCAATTTTATTTTAT 58.852 33.333 0.00 0.00 38.24 1.40
42 43 9.845740 GTATTGGCCCCTCAATTTTATTTTATT 57.154 29.630 0.00 0.00 38.24 1.40
44 45 9.766754 ATTGGCCCCTCAATTTTATTTTATTTT 57.233 25.926 0.00 0.00 34.01 1.82
45 46 8.572855 TGGCCCCTCAATTTTATTTTATTTTG 57.427 30.769 0.00 0.00 0.00 2.44
46 47 8.386264 TGGCCCCTCAATTTTATTTTATTTTGA 58.614 29.630 0.00 0.00 0.00 2.69
47 48 8.673711 GGCCCCTCAATTTTATTTTATTTTGAC 58.326 33.333 0.00 0.00 0.00 3.18
48 49 9.225436 GCCCCTCAATTTTATTTTATTTTGACA 57.775 29.630 0.00 0.00 0.00 3.58
57 58 7.913674 TTATTTTATTTTGACATGTTGGCCC 57.086 32.000 0.00 0.00 0.00 5.80
58 59 3.971245 TTATTTTGACATGTTGGCCCC 57.029 42.857 0.00 0.00 0.00 5.80
59 60 2.028561 ATTTTGACATGTTGGCCCCT 57.971 45.000 0.00 0.00 0.00 4.79
60 61 1.337118 TTTTGACATGTTGGCCCCTC 58.663 50.000 0.00 0.00 0.00 4.30
61 62 0.187117 TTTGACATGTTGGCCCCTCA 59.813 50.000 0.00 0.00 0.00 3.86
62 63 0.187117 TTGACATGTTGGCCCCTCAA 59.813 50.000 0.00 0.00 0.00 3.02
63 64 0.409092 TGACATGTTGGCCCCTCAAT 59.591 50.000 0.00 0.00 0.00 2.57
64 65 1.203162 TGACATGTTGGCCCCTCAATT 60.203 47.619 0.00 0.00 0.00 2.32
65 66 1.478105 GACATGTTGGCCCCTCAATTC 59.522 52.381 0.00 0.00 0.00 2.17
66 67 1.203162 ACATGTTGGCCCCTCAATTCA 60.203 47.619 0.00 0.00 0.00 2.57
67 68 2.112998 CATGTTGGCCCCTCAATTCAT 58.887 47.619 0.00 0.00 0.00 2.57
68 69 1.559368 TGTTGGCCCCTCAATTCATG 58.441 50.000 0.00 0.00 0.00 3.07
69 70 1.203162 TGTTGGCCCCTCAATTCATGT 60.203 47.619 0.00 0.00 0.00 3.21
70 71 2.042297 TGTTGGCCCCTCAATTCATGTA 59.958 45.455 0.00 0.00 0.00 2.29
71 72 3.299503 GTTGGCCCCTCAATTCATGTAT 58.700 45.455 0.00 0.00 0.00 2.29
72 73 3.686227 TGGCCCCTCAATTCATGTATT 57.314 42.857 0.00 0.00 0.00 1.89
73 74 3.565307 TGGCCCCTCAATTCATGTATTC 58.435 45.455 0.00 0.00 0.00 1.75
74 75 3.053019 TGGCCCCTCAATTCATGTATTCA 60.053 43.478 0.00 0.00 0.00 2.57
75 76 3.960102 GGCCCCTCAATTCATGTATTCAA 59.040 43.478 0.00 0.00 0.00 2.69
76 77 4.202151 GGCCCCTCAATTCATGTATTCAAC 60.202 45.833 0.00 0.00 0.00 3.18
77 78 4.402155 GCCCCTCAATTCATGTATTCAACA 59.598 41.667 0.00 0.00 43.86 3.33
78 79 5.450965 GCCCCTCAATTCATGTATTCAACAG 60.451 44.000 0.00 0.00 42.70 3.16
79 80 5.653769 CCCCTCAATTCATGTATTCAACAGT 59.346 40.000 0.00 0.00 42.70 3.55
80 81 6.183360 CCCCTCAATTCATGTATTCAACAGTC 60.183 42.308 0.00 0.00 42.70 3.51
81 82 6.600822 CCCTCAATTCATGTATTCAACAGTCT 59.399 38.462 0.00 0.00 42.70 3.24
82 83 7.770433 CCCTCAATTCATGTATTCAACAGTCTA 59.230 37.037 0.00 0.00 42.70 2.59
83 84 9.334947 CCTCAATTCATGTATTCAACAGTCTAT 57.665 33.333 0.00 0.00 42.70 1.98
108 109 9.635520 ATTTATTCTTTTGAGACAATTCAGCAG 57.364 29.630 0.00 0.00 0.00 4.24
109 110 6.645790 ATTCTTTTGAGACAATTCAGCAGT 57.354 33.333 0.00 0.00 0.00 4.40
110 111 6.455360 TTCTTTTGAGACAATTCAGCAGTT 57.545 33.333 0.00 0.00 0.00 3.16
111 112 6.455360 TCTTTTGAGACAATTCAGCAGTTT 57.545 33.333 0.00 0.00 0.00 2.66
112 113 7.566760 TCTTTTGAGACAATTCAGCAGTTTA 57.433 32.000 0.00 0.00 0.00 2.01
113 114 7.642669 TCTTTTGAGACAATTCAGCAGTTTAG 58.357 34.615 0.00 0.00 0.00 1.85
114 115 7.498900 TCTTTTGAGACAATTCAGCAGTTTAGA 59.501 33.333 0.00 0.00 0.00 2.10
115 116 7.750229 TTTGAGACAATTCAGCAGTTTAGAT 57.250 32.000 0.00 0.00 0.00 1.98
116 117 6.974932 TGAGACAATTCAGCAGTTTAGATC 57.025 37.500 0.00 0.00 0.00 2.75
117 118 5.877012 TGAGACAATTCAGCAGTTTAGATCC 59.123 40.000 0.00 0.00 0.00 3.36
118 119 4.872691 AGACAATTCAGCAGTTTAGATCCG 59.127 41.667 0.00 0.00 0.00 4.18
119 120 3.941483 ACAATTCAGCAGTTTAGATCCGG 59.059 43.478 0.00 0.00 0.00 5.14
120 121 3.914426 ATTCAGCAGTTTAGATCCGGT 57.086 42.857 0.00 0.00 0.00 5.28
121 122 2.961526 TCAGCAGTTTAGATCCGGTC 57.038 50.000 0.00 0.00 0.00 4.79
122 123 2.176045 TCAGCAGTTTAGATCCGGTCA 58.824 47.619 0.00 0.00 0.00 4.02
123 124 2.166459 TCAGCAGTTTAGATCCGGTCAG 59.834 50.000 0.00 0.00 0.00 3.51
124 125 2.093973 CAGCAGTTTAGATCCGGTCAGT 60.094 50.000 0.00 0.00 0.00 3.41
125 126 2.093973 AGCAGTTTAGATCCGGTCAGTG 60.094 50.000 0.00 0.00 0.00 3.66
126 127 2.271800 CAGTTTAGATCCGGTCAGTGC 58.728 52.381 0.00 0.00 0.00 4.40
127 128 1.899814 AGTTTAGATCCGGTCAGTGCA 59.100 47.619 0.00 0.00 0.00 4.57
128 129 2.301870 AGTTTAGATCCGGTCAGTGCAA 59.698 45.455 0.00 0.00 0.00 4.08
129 130 2.380084 TTAGATCCGGTCAGTGCAAC 57.620 50.000 0.00 0.00 0.00 4.17
130 131 0.172578 TAGATCCGGTCAGTGCAACG 59.827 55.000 0.00 0.00 45.86 4.10
131 132 2.047274 ATCCGGTCAGTGCAACGG 60.047 61.111 11.45 11.45 45.86 4.44
132 133 2.781595 GATCCGGTCAGTGCAACGGT 62.782 60.000 15.59 6.46 45.86 4.83
133 134 2.391724 ATCCGGTCAGTGCAACGGTT 62.392 55.000 15.59 7.56 45.86 4.44
134 135 2.631428 CGGTCAGTGCAACGGTTG 59.369 61.111 16.35 16.35 45.86 3.77
135 136 2.892334 CGGTCAGTGCAACGGTTGG 61.892 63.158 21.37 5.83 45.86 3.77
136 137 2.551912 GGTCAGTGCAACGGTTGGG 61.552 63.158 21.37 0.00 45.86 4.12
137 138 1.525077 GTCAGTGCAACGGTTGGGA 60.525 57.895 21.37 2.09 45.86 4.37
138 139 1.098712 GTCAGTGCAACGGTTGGGAA 61.099 55.000 21.37 0.00 45.86 3.97
139 140 1.098712 TCAGTGCAACGGTTGGGAAC 61.099 55.000 21.37 6.18 45.86 3.62
140 141 1.077357 AGTGCAACGGTTGGGAACA 60.077 52.632 21.37 8.66 45.86 3.18
141 142 0.681564 AGTGCAACGGTTGGGAACAA 60.682 50.000 21.37 0.00 46.98 2.83
153 154 2.745968 TGGGAACAATAAATGGGCTCC 58.254 47.619 0.00 0.00 37.44 4.70
154 155 2.043664 TGGGAACAATAAATGGGCTCCA 59.956 45.455 0.00 0.00 37.44 3.86
155 156 3.103742 GGGAACAATAAATGGGCTCCAA 58.896 45.455 0.00 0.00 36.95 3.53
156 157 3.118775 GGGAACAATAAATGGGCTCCAAC 60.119 47.826 0.00 0.00 36.95 3.77
157 158 3.428862 GGAACAATAAATGGGCTCCAACG 60.429 47.826 0.00 0.00 36.95 4.10
158 159 2.802719 ACAATAAATGGGCTCCAACGT 58.197 42.857 0.00 0.00 36.95 3.99
159 160 2.752903 ACAATAAATGGGCTCCAACGTC 59.247 45.455 0.00 0.00 36.95 4.34
160 161 1.663695 ATAAATGGGCTCCAACGTCG 58.336 50.000 0.00 0.00 36.95 5.12
161 162 1.022451 TAAATGGGCTCCAACGTCGC 61.022 55.000 0.00 0.00 36.95 5.19
162 163 4.778143 ATGGGCTCCAACGTCGCC 62.778 66.667 8.97 8.97 43.03 5.54
175 176 4.063967 TCGCCGTTCGTCCAGCAT 62.064 61.111 0.00 0.00 39.67 3.79
176 177 3.554692 CGCCGTTCGTCCAGCATC 61.555 66.667 0.00 0.00 0.00 3.91
177 178 2.125512 GCCGTTCGTCCAGCATCT 60.126 61.111 0.00 0.00 0.00 2.90
178 179 2.167861 GCCGTTCGTCCAGCATCTC 61.168 63.158 0.00 0.00 0.00 2.75
179 180 1.874019 CCGTTCGTCCAGCATCTCG 60.874 63.158 0.00 0.00 0.00 4.04
180 181 1.874019 CGTTCGTCCAGCATCTCGG 60.874 63.158 0.00 0.00 0.00 4.63
181 182 1.511305 GTTCGTCCAGCATCTCGGA 59.489 57.895 0.00 0.00 0.00 4.55
182 183 0.103208 GTTCGTCCAGCATCTCGGAT 59.897 55.000 0.00 0.00 32.83 4.18
183 184 0.824109 TTCGTCCAGCATCTCGGATT 59.176 50.000 0.00 0.00 32.83 3.01
184 185 0.824109 TCGTCCAGCATCTCGGATTT 59.176 50.000 0.00 0.00 32.83 2.17
185 186 0.933097 CGTCCAGCATCTCGGATTTG 59.067 55.000 0.00 0.00 32.83 2.32
186 187 1.303309 GTCCAGCATCTCGGATTTGG 58.697 55.000 0.00 7.38 32.83 3.28
187 188 0.464373 TCCAGCATCTCGGATTTGGC 60.464 55.000 0.00 0.00 0.00 4.52
188 189 1.645455 CAGCATCTCGGATTTGGCG 59.355 57.895 0.00 0.00 0.00 5.69
189 190 1.524621 AGCATCTCGGATTTGGCGG 60.525 57.895 0.00 0.00 0.00 6.13
190 191 3.025619 CATCTCGGATTTGGCGGC 58.974 61.111 0.00 0.00 0.00 6.53
191 192 2.203209 ATCTCGGATTTGGCGGCC 60.203 61.111 13.32 13.32 0.00 6.13
192 193 3.774599 ATCTCGGATTTGGCGGCCC 62.775 63.158 17.97 0.00 0.00 5.80
193 194 4.794648 CTCGGATTTGGCGGCCCA 62.795 66.667 17.97 1.48 40.06 5.36
194 195 4.122149 TCGGATTTGGCGGCCCAT 62.122 61.111 17.97 8.65 41.78 4.00
195 196 2.203280 CGGATTTGGCGGCCCATA 60.203 61.111 17.97 1.52 41.78 2.74
196 197 1.826054 CGGATTTGGCGGCCCATAA 60.826 57.895 17.97 8.63 41.78 1.90
197 198 1.178534 CGGATTTGGCGGCCCATAAT 61.179 55.000 17.97 13.16 41.78 1.28
198 199 1.047801 GGATTTGGCGGCCCATAATT 58.952 50.000 17.97 0.44 41.78 1.40
199 200 1.416030 GGATTTGGCGGCCCATAATTT 59.584 47.619 17.97 0.00 41.78 1.82
200 201 2.482864 GATTTGGCGGCCCATAATTTG 58.517 47.619 17.97 0.00 41.78 2.32
201 202 1.270907 TTTGGCGGCCCATAATTTGT 58.729 45.000 17.97 0.00 41.78 2.83
202 203 0.534412 TTGGCGGCCCATAATTTGTG 59.466 50.000 17.97 0.00 41.78 3.33
203 204 1.227234 GGCGGCCCATAATTTGTGC 60.227 57.895 8.12 0.00 0.00 4.57
204 205 1.675720 GGCGGCCCATAATTTGTGCT 61.676 55.000 8.12 0.00 0.00 4.40
205 206 0.175531 GCGGCCCATAATTTGTGCTT 59.824 50.000 0.00 0.00 0.00 3.91
206 207 1.802508 GCGGCCCATAATTTGTGCTTC 60.803 52.381 0.00 0.00 0.00 3.86
207 208 1.202405 CGGCCCATAATTTGTGCTTCC 60.202 52.381 0.00 0.00 0.00 3.46
208 209 1.202405 GGCCCATAATTTGTGCTTCCG 60.202 52.381 0.00 0.00 0.00 4.30
209 210 1.476488 GCCCATAATTTGTGCTTCCGT 59.524 47.619 0.00 0.00 0.00 4.69
210 211 2.479560 GCCCATAATTTGTGCTTCCGTC 60.480 50.000 0.00 0.00 0.00 4.79
211 212 2.752354 CCCATAATTTGTGCTTCCGTCA 59.248 45.455 0.00 0.00 0.00 4.35
212 213 3.181497 CCCATAATTTGTGCTTCCGTCAG 60.181 47.826 0.00 0.00 0.00 3.51
213 214 3.689161 CCATAATTTGTGCTTCCGTCAGA 59.311 43.478 0.00 0.00 0.00 3.27
214 215 4.201851 CCATAATTTGTGCTTCCGTCAGAG 60.202 45.833 0.00 0.00 0.00 3.35
215 216 1.160137 ATTTGTGCTTCCGTCAGAGC 58.840 50.000 0.00 0.00 0.00 4.09
216 217 1.221466 TTTGTGCTTCCGTCAGAGCG 61.221 55.000 0.00 0.00 0.00 5.03
223 224 4.979204 CCGTCAGAGCGGTAACAA 57.021 55.556 0.00 0.00 46.11 2.83
224 225 2.442084 CCGTCAGAGCGGTAACAAC 58.558 57.895 0.00 0.00 46.11 3.32
225 226 1.342082 CCGTCAGAGCGGTAACAACG 61.342 60.000 0.00 0.00 46.11 4.10
226 227 0.662374 CGTCAGAGCGGTAACAACGT 60.662 55.000 0.00 0.00 0.00 3.99
227 228 0.782384 GTCAGAGCGGTAACAACGTG 59.218 55.000 0.00 0.00 0.00 4.49
228 229 0.669619 TCAGAGCGGTAACAACGTGA 59.330 50.000 0.00 0.00 0.00 4.35
229 230 0.782384 CAGAGCGGTAACAACGTGAC 59.218 55.000 0.00 0.00 0.00 3.67
230 231 0.672342 AGAGCGGTAACAACGTGACT 59.328 50.000 0.00 0.00 0.00 3.41
231 232 0.782384 GAGCGGTAACAACGTGACTG 59.218 55.000 0.00 0.00 0.00 3.51
232 233 0.386476 AGCGGTAACAACGTGACTGA 59.614 50.000 0.00 0.00 0.00 3.41
233 234 0.505655 GCGGTAACAACGTGACTGAC 59.494 55.000 0.00 0.00 0.00 3.51
272 273 3.713826 GGTCATCAACCCTGGTAAAGA 57.286 47.619 0.00 0.00 42.85 2.52
273 274 4.028993 GGTCATCAACCCTGGTAAAGAA 57.971 45.455 0.00 0.00 42.85 2.52
274 275 4.403734 GGTCATCAACCCTGGTAAAGAAA 58.596 43.478 0.00 0.00 42.85 2.52
275 276 4.830600 GGTCATCAACCCTGGTAAAGAAAA 59.169 41.667 0.00 0.00 42.85 2.29
276 277 5.048013 GGTCATCAACCCTGGTAAAGAAAAG 60.048 44.000 0.00 0.00 42.85 2.27
277 278 5.768164 GTCATCAACCCTGGTAAAGAAAAGA 59.232 40.000 0.00 0.00 0.00 2.52
278 279 6.264518 GTCATCAACCCTGGTAAAGAAAAGAA 59.735 38.462 0.00 0.00 0.00 2.52
279 280 7.010160 TCATCAACCCTGGTAAAGAAAAGAAT 58.990 34.615 0.00 0.00 0.00 2.40
280 281 8.167392 TCATCAACCCTGGTAAAGAAAAGAATA 58.833 33.333 0.00 0.00 0.00 1.75
281 282 7.754851 TCAACCCTGGTAAAGAAAAGAATAC 57.245 36.000 0.00 0.00 0.00 1.89
282 283 7.523415 TCAACCCTGGTAAAGAAAAGAATACT 58.477 34.615 0.00 0.00 0.00 2.12
283 284 8.002459 TCAACCCTGGTAAAGAAAAGAATACTT 58.998 33.333 0.00 0.00 38.05 2.24
284 285 7.761038 ACCCTGGTAAAGAAAAGAATACTTG 57.239 36.000 0.00 0.00 36.39 3.16
285 286 6.719829 ACCCTGGTAAAGAAAAGAATACTTGG 59.280 38.462 0.00 0.00 36.39 3.61
286 287 6.152831 CCCTGGTAAAGAAAAGAATACTTGGG 59.847 42.308 0.00 0.00 36.39 4.12
287 288 6.350194 CCTGGTAAAGAAAAGAATACTTGGGC 60.350 42.308 0.00 0.00 36.39 5.36
288 289 5.479027 TGGTAAAGAAAAGAATACTTGGGCC 59.521 40.000 0.00 0.00 36.39 5.80
289 290 5.715279 GGTAAAGAAAAGAATACTTGGGCCT 59.285 40.000 4.53 0.00 36.39 5.19
290 291 6.210784 GGTAAAGAAAAGAATACTTGGGCCTT 59.789 38.462 4.53 0.00 36.39 4.35
291 292 5.984695 AAGAAAAGAATACTTGGGCCTTC 57.015 39.130 4.53 0.00 36.39 3.46
292 293 4.998051 AGAAAAGAATACTTGGGCCTTCA 58.002 39.130 4.53 0.00 36.39 3.02
293 294 4.767409 AGAAAAGAATACTTGGGCCTTCAC 59.233 41.667 4.53 0.00 36.39 3.18
294 295 2.403252 AGAATACTTGGGCCTTCACG 57.597 50.000 4.53 0.00 0.00 4.35
295 296 1.628846 AGAATACTTGGGCCTTCACGT 59.371 47.619 4.53 0.00 0.00 4.49
296 297 1.737793 GAATACTTGGGCCTTCACGTG 59.262 52.381 9.94 9.94 0.00 4.49
297 298 0.981183 ATACTTGGGCCTTCACGTGA 59.019 50.000 15.76 15.76 0.00 4.35
298 299 0.981183 TACTTGGGCCTTCACGTGAT 59.019 50.000 20.80 3.20 0.00 3.06
299 300 0.606401 ACTTGGGCCTTCACGTGATG 60.606 55.000 20.80 21.05 0.00 3.07
300 301 1.303236 TTGGGCCTTCACGTGATGG 60.303 57.895 34.70 34.70 41.00 3.51
301 302 2.438434 GGGCCTTCACGTGATGGG 60.438 66.667 37.25 31.05 39.14 4.00
302 303 2.351276 GGCCTTCACGTGATGGGT 59.649 61.111 37.25 0.00 39.14 4.51
303 304 1.745489 GGCCTTCACGTGATGGGTC 60.745 63.158 37.25 29.52 39.14 4.46
304 305 1.745489 GCCTTCACGTGATGGGTCC 60.745 63.158 37.25 24.05 39.14 4.46
305 306 1.676968 CCTTCACGTGATGGGTCCA 59.323 57.895 32.62 12.26 36.16 4.02
306 307 0.253044 CCTTCACGTGATGGGTCCAT 59.747 55.000 32.62 1.54 39.69 3.41
307 308 1.372582 CTTCACGTGATGGGTCCATG 58.627 55.000 20.80 0.00 36.70 3.66
308 309 0.980423 TTCACGTGATGGGTCCATGA 59.020 50.000 20.80 0.00 36.70 3.07
309 310 1.203237 TCACGTGATGGGTCCATGAT 58.797 50.000 15.76 0.00 36.70 2.45
310 311 1.138859 TCACGTGATGGGTCCATGATC 59.861 52.381 15.76 0.00 36.70 2.92
311 312 1.139654 CACGTGATGGGTCCATGATCT 59.860 52.381 10.90 0.00 36.70 2.75
312 313 1.414181 ACGTGATGGGTCCATGATCTC 59.586 52.381 7.29 0.00 36.70 2.75
313 314 1.603931 CGTGATGGGTCCATGATCTCG 60.604 57.143 7.29 3.57 36.70 4.04
314 315 1.688735 GTGATGGGTCCATGATCTCGA 59.311 52.381 7.29 0.00 36.70 4.04
315 316 1.966354 TGATGGGTCCATGATCTCGAG 59.034 52.381 5.93 5.93 36.70 4.04
316 317 1.274728 GATGGGTCCATGATCTCGAGG 59.725 57.143 13.56 0.00 36.70 4.63
317 318 0.261696 TGGGTCCATGATCTCGAGGA 59.738 55.000 13.56 0.00 0.00 3.71
318 319 0.965439 GGGTCCATGATCTCGAGGAG 59.035 60.000 13.56 0.00 0.00 3.69
319 320 1.479573 GGGTCCATGATCTCGAGGAGA 60.480 57.143 13.56 0.00 43.20 3.71
321 322 1.269448 GTCCATGATCTCGAGGAGAGC 59.731 57.143 13.56 4.05 46.44 4.09
322 323 0.240678 CCATGATCTCGAGGAGAGCG 59.759 60.000 13.56 0.00 46.57 5.03
323 324 1.233919 CATGATCTCGAGGAGAGCGA 58.766 55.000 13.56 0.00 46.57 4.93
324 325 1.606189 CATGATCTCGAGGAGAGCGAA 59.394 52.381 13.56 0.00 46.57 4.70
325 326 1.018148 TGATCTCGAGGAGAGCGAAC 58.982 55.000 13.56 0.00 46.57 3.95
326 327 0.041663 GATCTCGAGGAGAGCGAACG 60.042 60.000 13.56 0.00 46.44 3.95
327 328 1.440938 ATCTCGAGGAGAGCGAACGG 61.441 60.000 13.56 0.00 46.44 4.44
328 329 3.114647 CTCGAGGAGAGCGAACGGG 62.115 68.421 3.91 0.00 40.54 5.28
329 330 4.194720 CGAGGAGAGCGAACGGGG 62.195 72.222 0.00 0.00 0.00 5.73
330 331 2.754658 GAGGAGAGCGAACGGGGA 60.755 66.667 0.00 0.00 0.00 4.81
331 332 2.042843 AGGAGAGCGAACGGGGAT 60.043 61.111 0.00 0.00 0.00 3.85
332 333 2.107141 GGAGAGCGAACGGGGATG 59.893 66.667 0.00 0.00 0.00 3.51
333 334 2.423898 GGAGAGCGAACGGGGATGA 61.424 63.158 0.00 0.00 0.00 2.92
334 335 1.742768 GAGAGCGAACGGGGATGAT 59.257 57.895 0.00 0.00 0.00 2.45
335 336 0.105039 GAGAGCGAACGGGGATGATT 59.895 55.000 0.00 0.00 0.00 2.57
336 337 0.105039 AGAGCGAACGGGGATGATTC 59.895 55.000 0.00 0.00 0.00 2.52
337 338 0.105039 GAGCGAACGGGGATGATTCT 59.895 55.000 0.00 0.00 0.00 2.40
338 339 0.179073 AGCGAACGGGGATGATTCTG 60.179 55.000 0.00 0.00 0.00 3.02
339 340 1.776034 GCGAACGGGGATGATTCTGC 61.776 60.000 0.00 0.00 0.00 4.26
340 341 1.490693 CGAACGGGGATGATTCTGCG 61.491 60.000 0.00 0.00 0.00 5.18
341 342 0.179084 GAACGGGGATGATTCTGCGA 60.179 55.000 0.00 0.00 0.00 5.10
342 343 0.179073 AACGGGGATGATTCTGCGAG 60.179 55.000 0.00 0.00 0.00 5.03
343 344 1.958205 CGGGGATGATTCTGCGAGC 60.958 63.158 0.00 0.00 0.00 5.03
344 345 1.146930 GGGGATGATTCTGCGAGCA 59.853 57.895 0.00 0.00 0.00 4.26
345 346 0.250640 GGGGATGATTCTGCGAGCAT 60.251 55.000 0.00 0.00 0.00 3.79
346 347 1.002430 GGGGATGATTCTGCGAGCATA 59.998 52.381 0.00 0.00 0.00 3.14
347 348 2.355513 GGGGATGATTCTGCGAGCATAT 60.356 50.000 0.00 0.00 0.00 1.78
348 349 2.676839 GGGATGATTCTGCGAGCATATG 59.323 50.000 0.00 0.00 0.00 1.78
349 350 3.332919 GGATGATTCTGCGAGCATATGT 58.667 45.455 4.29 0.00 0.00 2.29
350 351 3.124806 GGATGATTCTGCGAGCATATGTG 59.875 47.826 4.29 0.00 0.00 3.21
367 368 3.867771 GCTCGAGCACAGAACAGG 58.132 61.111 31.91 0.00 41.59 4.00
368 369 1.290324 GCTCGAGCACAGAACAGGA 59.710 57.895 31.91 0.00 41.59 3.86
369 370 1.011451 GCTCGAGCACAGAACAGGAC 61.011 60.000 31.91 0.00 41.59 3.85
370 371 0.600557 CTCGAGCACAGAACAGGACT 59.399 55.000 0.00 0.00 0.00 3.85
371 372 1.000283 CTCGAGCACAGAACAGGACTT 60.000 52.381 0.00 0.00 0.00 3.01
372 373 1.412710 TCGAGCACAGAACAGGACTTT 59.587 47.619 0.00 0.00 0.00 2.66
373 374 1.795286 CGAGCACAGAACAGGACTTTC 59.205 52.381 0.00 0.00 0.00 2.62
374 375 1.795286 GAGCACAGAACAGGACTTTCG 59.205 52.381 0.00 0.00 0.00 3.46
378 379 2.544267 CACAGAACAGGACTTTCGGAAC 59.456 50.000 0.00 0.00 0.00 3.62
385 386 1.344763 AGGACTTTCGGAACACTCTGG 59.655 52.381 0.00 0.00 0.00 3.86
391 392 1.048601 TCGGAACACTCTGGCTTTCT 58.951 50.000 0.00 0.00 0.00 2.52
439 440 9.768662 ACTTAGAAGGACACGAAGTAAATAAAA 57.231 29.630 0.00 0.00 41.61 1.52
441 442 9.985730 TTAGAAGGACACGAAGTAAATAAAAGA 57.014 29.630 0.00 0.00 41.61 2.52
442 443 8.897872 AGAAGGACACGAAGTAAATAAAAGAA 57.102 30.769 0.00 0.00 41.61 2.52
496 498 3.866356 GGCTAACCCGTTCGTCAC 58.134 61.111 0.00 0.00 0.00 3.67
497 499 1.739196 GGCTAACCCGTTCGTCACC 60.739 63.158 0.00 0.00 0.00 4.02
498 500 2.090524 GCTAACCCGTTCGTCACCG 61.091 63.158 0.00 0.00 0.00 4.94
499 501 1.580942 CTAACCCGTTCGTCACCGA 59.419 57.895 0.00 0.00 42.41 4.69
500 502 0.730494 CTAACCCGTTCGTCACCGAC 60.730 60.000 0.00 0.00 44.13 4.79
505 507 1.728426 CGTTCGTCACCGACTCACC 60.728 63.158 0.00 0.00 44.13 4.02
516 518 0.575390 CGACTCACCGTGACAAACAC 59.425 55.000 0.00 0.00 45.11 3.32
893 895 1.002502 CCTTTCCCCGTCCAGTTCC 60.003 63.158 0.00 0.00 0.00 3.62
903 922 0.246910 GTCCAGTTCCGTCTTCCTCC 59.753 60.000 0.00 0.00 0.00 4.30
937 959 3.618855 TAGGCGGTTGCTCTCCCCT 62.619 63.158 0.00 0.00 42.25 4.79
938 960 4.475135 GGCGGTTGCTCTCCCCTC 62.475 72.222 0.00 0.00 42.25 4.30
939 961 3.394836 GCGGTTGCTCTCCCCTCT 61.395 66.667 0.00 0.00 38.39 3.69
940 962 2.896443 CGGTTGCTCTCCCCTCTC 59.104 66.667 0.00 0.00 0.00 3.20
941 963 2.726351 CGGTTGCTCTCCCCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
942 964 2.371259 GGTTGCTCTCCCCTCTCCC 61.371 68.421 0.00 0.00 0.00 4.30
943 965 1.306568 GTTGCTCTCCCCTCTCCCT 60.307 63.158 0.00 0.00 0.00 4.20
1464 1502 4.870426 ACTCGCTATCCATGTTGTTTACTG 59.130 41.667 0.00 0.00 0.00 2.74
1614 1666 2.872858 GTTTAGAATCGATGGGACTGGC 59.127 50.000 0.00 0.00 0.00 4.85
1845 1906 8.768397 ACCAGTATAAACAATATGGAGTCTCAA 58.232 33.333 1.47 0.00 0.00 3.02
1932 2229 9.793252 GTGCTATTGTTGATATCAAACAATTCT 57.207 29.630 29.88 19.67 37.96 2.40
1967 2264 4.304110 TGTTGTCTTGGAGCTTAAGTACG 58.696 43.478 4.02 0.00 0.00 3.67
2147 2446 4.392940 AGTTGAGCACTGAGCAAACTATT 58.607 39.130 13.53 0.00 45.16 1.73
2223 2522 5.336213 GCACCTGCCTCCATATTATTCAATG 60.336 44.000 0.00 0.00 34.31 2.82
2276 2580 9.868277 TGTACTTTGCCCATTTGATTTAATTAG 57.132 29.630 0.00 0.00 0.00 1.73
2432 2736 2.856222 CTCACAAAGGAGGAACTTGCT 58.144 47.619 0.00 0.00 41.55 3.91
2459 2763 1.675310 TGATCTGGTTGCCGCCTTG 60.675 57.895 0.00 0.00 0.00 3.61
2561 2865 0.535102 CTGGTGGAGGCGTCAAGTTT 60.535 55.000 8.91 0.00 0.00 2.66
2613 2917 3.728076 TGGTATCACCTAAGTCATCGC 57.272 47.619 0.00 0.00 39.58 4.58
2627 2937 2.033801 GTCATCGCTATGCATTGGCTTT 59.966 45.455 3.54 0.00 41.91 3.51
2646 2956 2.425143 TGGAATGATCTGGCCAAGTC 57.575 50.000 7.01 8.59 0.00 3.01
2650 2960 1.649271 ATGATCTGGCCAAGTCCCCC 61.649 60.000 7.01 0.00 0.00 5.40
2658 2968 2.355115 CAAGTCCCCCTTTCCCCG 59.645 66.667 0.00 0.00 0.00 5.73
2770 3080 5.320277 AGTTCTCCTTTTTGAGGGATTCTG 58.680 41.667 0.00 0.00 46.31 3.02
2956 3266 5.329035 AGATGGACAAAATATGTTGGCAC 57.671 39.130 13.65 3.71 44.12 5.01
2958 3268 4.517952 TGGACAAAATATGTTGGCACTG 57.482 40.909 13.65 0.00 44.12 3.66
3084 3397 9.562408 CCCTTCTTAAATTTACTCTTATCCTCC 57.438 37.037 0.00 0.00 0.00 4.30
3120 3433 7.032377 AGCTGAACCTTTTAGTTTTCTCTTG 57.968 36.000 0.00 0.00 0.00 3.02
3226 3543 3.521560 TGCGTAGAATGAAGCAGGTAAG 58.478 45.455 0.00 0.00 34.39 2.34
3411 3741 0.110644 GCGTCCTGTGCTTCTTTTCG 60.111 55.000 0.00 0.00 0.00 3.46
3413 3743 2.069273 CGTCCTGTGCTTCTTTTCGAT 58.931 47.619 0.00 0.00 0.00 3.59
3434 3764 9.465985 TTCGATTTATACGCTGATTATGTGTAA 57.534 29.630 0.00 0.00 34.66 2.41
3506 3853 4.018490 TGGATGAAATGGATGACAAGGTG 58.982 43.478 0.00 0.00 0.00 4.00
3573 3925 2.016318 TCGGCAATGCTTAATGTCTGG 58.984 47.619 4.82 0.00 0.00 3.86
3668 4022 6.072452 CCATTCTTCAGGTAAAAGTTCACTCC 60.072 42.308 0.00 0.00 0.00 3.85
3701 4055 2.205022 TCCTTGACTGATGCTTTGGG 57.795 50.000 0.00 0.00 0.00 4.12
4006 4470 0.258774 ACACTGCCCTGTTTGACCTT 59.741 50.000 0.00 0.00 0.00 3.50
4095 4559 2.125912 GTGCTCATGTCGCGGTCT 60.126 61.111 6.13 0.00 0.00 3.85
4192 4656 4.224433 TCGTTTCGTCTCATCTGTGTAAC 58.776 43.478 0.00 0.00 37.35 2.50
4287 4761 9.701098 TGATTGTATGTATATTCGGGAGTAAAC 57.299 33.333 0.00 0.00 0.00 2.01
4296 4770 3.587797 TCGGGAGTAAACTGCTTAGTG 57.412 47.619 1.54 0.00 34.50 2.74
4308 4782 4.547532 ACTGCTTAGTGAGAGTACAAACG 58.452 43.478 0.00 0.00 0.00 3.60
4309 4783 3.314553 TGCTTAGTGAGAGTACAAACGC 58.685 45.455 0.00 0.00 0.00 4.84
4327 4801 6.983890 ACAAACGCCATTCTTTTGTTCTAAAT 59.016 30.769 0.00 0.00 42.29 1.40
4331 4805 6.016276 ACGCCATTCTTTTGTTCTAAATCTGT 60.016 34.615 0.00 0.00 0.00 3.41
4346 4821 8.409358 TCTAAATCTGTCTATGTATAGCTGCA 57.591 34.615 1.02 0.00 0.00 4.41
4349 4824 8.915057 AAATCTGTCTATGTATAGCTGCATTT 57.085 30.769 1.02 0.00 0.00 2.32
4353 4828 6.459066 TGTCTATGTATAGCTGCATTTCCTC 58.541 40.000 1.02 0.00 0.00 3.71
4354 4829 6.041979 TGTCTATGTATAGCTGCATTTCCTCA 59.958 38.462 1.02 0.00 0.00 3.86
4378 4853 4.081476 GGCCTTTCTTTGAGTGGCATAAAT 60.081 41.667 0.00 0.00 44.85 1.40
4386 4861 5.794687 TTGAGTGGCATAAATAACTCACG 57.205 39.130 3.95 0.00 46.42 4.35
4399 4874 0.317479 ACTCACGGGTCACAGTTAGC 59.683 55.000 0.00 0.00 0.00 3.09
4406 4881 1.377333 GTCACAGTTAGCCCCCTGC 60.377 63.158 0.00 0.00 41.71 4.85
4421 4899 2.512745 TGCGTGTCGTGTTGGCTT 60.513 55.556 0.00 0.00 0.00 4.35
4425 4903 1.151777 CGTGTCGTGTTGGCTTGACT 61.152 55.000 0.00 0.00 32.64 3.41
4433 4911 1.607178 TTGGCTTGACTGGCATGGG 60.607 57.895 0.00 0.00 42.07 4.00
4503 4982 6.694447 AGTGTTACCTACATACGTGTGATTT 58.306 36.000 19.87 0.00 39.39 2.17
4528 5010 9.800433 TTTTGCATTATACTATGACAACAATGG 57.200 29.630 0.00 0.00 0.00 3.16
4531 5013 6.207417 GCATTATACTATGACAACAATGGCCT 59.793 38.462 3.32 0.00 31.48 5.19
4541 5023 1.165270 ACAATGGCCTTGCGTTCTAC 58.835 50.000 3.32 0.00 38.50 2.59
4543 5025 0.036765 AATGGCCTTGCGTTCTACGA 60.037 50.000 3.32 0.00 46.05 3.43
4590 5121 3.660501 TGTTACACGAGTGCTGAAGAT 57.339 42.857 2.76 0.00 0.00 2.40
4667 5199 3.924114 TCCTTGAAAGTGGAGTTGTCA 57.076 42.857 0.00 0.00 0.00 3.58
4734 5269 7.454694 ACAGAAAGGGTTTTAGGATTTTATGCT 59.545 33.333 0.00 0.00 34.41 3.79
4800 5339 4.040829 CCTCCTTGATGTAGGCATGATGTA 59.959 45.833 0.00 0.00 35.07 2.29
4857 5416 4.405358 GGCCAATGTGGAAAATATTCTCCA 59.595 41.667 6.40 6.40 40.96 3.86
4896 5457 6.894735 TTTTAGGGTGAGTAACATATGGGA 57.105 37.500 7.80 0.00 0.00 4.37
4916 5477 0.957395 CAGCTTCTTGTGCGACCCAT 60.957 55.000 0.00 0.00 35.28 4.00
5008 5570 0.250513 GGGCAACGAGACAGGAGATT 59.749 55.000 0.00 0.00 37.60 2.40
5011 5573 3.321111 GGGCAACGAGACAGGAGATTATA 59.679 47.826 0.00 0.00 37.60 0.98
5049 5611 8.767478 ATTTCTACAAGATTGAGCCAAATTTG 57.233 30.769 11.40 11.40 31.67 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.822026 CCAATACGTTCAGTTCTCCTTCT 58.178 43.478 0.00 0.00 0.00 2.85
1 2 3.371285 GCCAATACGTTCAGTTCTCCTTC 59.629 47.826 0.00 0.00 0.00 3.46
2 3 3.335579 GCCAATACGTTCAGTTCTCCTT 58.664 45.455 0.00 0.00 0.00 3.36
3 4 2.354805 GGCCAATACGTTCAGTTCTCCT 60.355 50.000 0.00 0.00 0.00 3.69
4 5 2.007608 GGCCAATACGTTCAGTTCTCC 58.992 52.381 0.00 0.00 0.00 3.71
5 6 2.007608 GGGCCAATACGTTCAGTTCTC 58.992 52.381 4.39 0.00 0.00 2.87
6 7 1.339727 GGGGCCAATACGTTCAGTTCT 60.340 52.381 4.39 0.00 0.00 3.01
7 8 1.092348 GGGGCCAATACGTTCAGTTC 58.908 55.000 4.39 0.00 0.00 3.01
8 9 0.696501 AGGGGCCAATACGTTCAGTT 59.303 50.000 4.39 0.00 0.00 3.16
9 10 0.252197 GAGGGGCCAATACGTTCAGT 59.748 55.000 4.39 0.00 0.00 3.41
10 11 0.251916 TGAGGGGCCAATACGTTCAG 59.748 55.000 4.39 0.00 0.00 3.02
11 12 0.693622 TTGAGGGGCCAATACGTTCA 59.306 50.000 4.39 0.00 0.00 3.18
12 13 2.052782 ATTGAGGGGCCAATACGTTC 57.947 50.000 4.39 0.00 35.20 3.95
13 14 2.525105 AATTGAGGGGCCAATACGTT 57.475 45.000 4.39 0.00 35.86 3.99
14 15 2.525105 AAATTGAGGGGCCAATACGT 57.475 45.000 4.39 0.00 35.86 3.57
15 16 5.529581 AATAAAATTGAGGGGCCAATACG 57.470 39.130 4.39 0.00 35.86 3.06
16 17 9.845740 AATAAAATAAAATTGAGGGGCCAATAC 57.154 29.630 4.39 0.00 35.86 1.89
18 19 9.766754 AAAATAAAATAAAATTGAGGGGCCAAT 57.233 25.926 4.39 0.00 38.30 3.16
19 20 9.018582 CAAAATAAAATAAAATTGAGGGGCCAA 57.981 29.630 4.39 0.00 0.00 4.52
20 21 8.386264 TCAAAATAAAATAAAATTGAGGGGCCA 58.614 29.630 4.39 0.00 0.00 5.36
21 22 8.673711 GTCAAAATAAAATAAAATTGAGGGGCC 58.326 33.333 0.00 0.00 0.00 5.80
22 23 9.225436 TGTCAAAATAAAATAAAATTGAGGGGC 57.775 29.630 0.00 0.00 0.00 5.80
31 32 8.787852 GGGCCAACATGTCAAAATAAAATAAAA 58.212 29.630 4.39 0.00 0.00 1.52
32 33 7.391833 GGGGCCAACATGTCAAAATAAAATAAA 59.608 33.333 4.39 0.00 0.00 1.40
33 34 6.881602 GGGGCCAACATGTCAAAATAAAATAA 59.118 34.615 4.39 0.00 0.00 1.40
34 35 6.214412 AGGGGCCAACATGTCAAAATAAAATA 59.786 34.615 4.39 0.00 0.00 1.40
35 36 5.014018 AGGGGCCAACATGTCAAAATAAAAT 59.986 36.000 4.39 0.00 0.00 1.82
36 37 4.349342 AGGGGCCAACATGTCAAAATAAAA 59.651 37.500 4.39 0.00 0.00 1.52
37 38 3.906846 AGGGGCCAACATGTCAAAATAAA 59.093 39.130 4.39 0.00 0.00 1.40
38 39 3.513515 GAGGGGCCAACATGTCAAAATAA 59.486 43.478 4.39 0.00 0.00 1.40
39 40 3.096092 GAGGGGCCAACATGTCAAAATA 58.904 45.455 4.39 0.00 0.00 1.40
40 41 1.901833 GAGGGGCCAACATGTCAAAAT 59.098 47.619 4.39 0.00 0.00 1.82
41 42 1.337118 GAGGGGCCAACATGTCAAAA 58.663 50.000 4.39 0.00 0.00 2.44
42 43 0.187117 TGAGGGGCCAACATGTCAAA 59.813 50.000 4.39 0.00 0.00 2.69
43 44 0.187117 TTGAGGGGCCAACATGTCAA 59.813 50.000 4.39 0.65 0.00 3.18
44 45 0.409092 ATTGAGGGGCCAACATGTCA 59.591 50.000 4.39 0.00 0.00 3.58
45 46 1.478105 GAATTGAGGGGCCAACATGTC 59.522 52.381 4.39 1.79 0.00 3.06
46 47 1.203162 TGAATTGAGGGGCCAACATGT 60.203 47.619 4.39 0.00 0.00 3.21
47 48 1.559368 TGAATTGAGGGGCCAACATG 58.441 50.000 4.39 0.00 0.00 3.21
48 49 2.112998 CATGAATTGAGGGGCCAACAT 58.887 47.619 4.39 0.00 0.00 2.71
49 50 1.203162 ACATGAATTGAGGGGCCAACA 60.203 47.619 4.39 1.06 0.00 3.33
50 51 1.560505 ACATGAATTGAGGGGCCAAC 58.439 50.000 4.39 0.00 0.00 3.77
51 52 3.686227 ATACATGAATTGAGGGGCCAA 57.314 42.857 4.39 0.00 0.00 4.52
52 53 3.053019 TGAATACATGAATTGAGGGGCCA 60.053 43.478 4.39 0.00 0.00 5.36
53 54 3.565307 TGAATACATGAATTGAGGGGCC 58.435 45.455 0.00 0.00 0.00 5.80
54 55 4.402155 TGTTGAATACATGAATTGAGGGGC 59.598 41.667 0.00 0.00 0.00 5.80
55 56 5.653769 ACTGTTGAATACATGAATTGAGGGG 59.346 40.000 0.00 0.00 35.85 4.79
56 57 6.600822 AGACTGTTGAATACATGAATTGAGGG 59.399 38.462 0.00 0.00 35.85 4.30
57 58 7.621428 AGACTGTTGAATACATGAATTGAGG 57.379 36.000 0.00 0.00 35.85 3.86
82 83 9.635520 CTGCTGAATTGTCTCAAAAGAATAAAT 57.364 29.630 0.00 0.00 31.93 1.40
83 84 8.632679 ACTGCTGAATTGTCTCAAAAGAATAAA 58.367 29.630 0.00 0.00 31.93 1.40
84 85 8.169977 ACTGCTGAATTGTCTCAAAAGAATAA 57.830 30.769 0.00 0.00 31.93 1.40
85 86 7.750229 ACTGCTGAATTGTCTCAAAAGAATA 57.250 32.000 0.00 0.00 31.93 1.75
86 87 6.645790 ACTGCTGAATTGTCTCAAAAGAAT 57.354 33.333 0.00 0.00 31.93 2.40
87 88 6.455360 AACTGCTGAATTGTCTCAAAAGAA 57.545 33.333 0.00 0.00 31.93 2.52
88 89 6.455360 AAACTGCTGAATTGTCTCAAAAGA 57.545 33.333 0.00 0.00 0.00 2.52
89 90 7.642669 TCTAAACTGCTGAATTGTCTCAAAAG 58.357 34.615 0.00 0.00 0.00 2.27
90 91 7.566760 TCTAAACTGCTGAATTGTCTCAAAA 57.433 32.000 0.00 0.00 0.00 2.44
91 92 7.094634 GGATCTAAACTGCTGAATTGTCTCAAA 60.095 37.037 0.00 0.00 0.00 2.69
92 93 6.372659 GGATCTAAACTGCTGAATTGTCTCAA 59.627 38.462 0.00 0.00 0.00 3.02
93 94 5.877012 GGATCTAAACTGCTGAATTGTCTCA 59.123 40.000 0.00 0.00 0.00 3.27
94 95 5.006165 CGGATCTAAACTGCTGAATTGTCTC 59.994 44.000 0.00 0.00 0.00 3.36
95 96 4.872691 CGGATCTAAACTGCTGAATTGTCT 59.127 41.667 0.00 0.00 0.00 3.41
96 97 4.034510 CCGGATCTAAACTGCTGAATTGTC 59.965 45.833 0.00 0.00 0.00 3.18
97 98 3.941483 CCGGATCTAAACTGCTGAATTGT 59.059 43.478 0.00 0.00 0.00 2.71
98 99 3.941483 ACCGGATCTAAACTGCTGAATTG 59.059 43.478 9.46 0.00 0.00 2.32
99 100 4.192317 GACCGGATCTAAACTGCTGAATT 58.808 43.478 9.46 0.00 0.00 2.17
100 101 3.197766 TGACCGGATCTAAACTGCTGAAT 59.802 43.478 9.46 0.00 0.00 2.57
101 102 2.565391 TGACCGGATCTAAACTGCTGAA 59.435 45.455 9.46 0.00 0.00 3.02
102 103 2.166459 CTGACCGGATCTAAACTGCTGA 59.834 50.000 9.46 0.00 0.00 4.26
103 104 2.093973 ACTGACCGGATCTAAACTGCTG 60.094 50.000 9.46 0.00 0.00 4.41
104 105 2.093973 CACTGACCGGATCTAAACTGCT 60.094 50.000 9.46 0.00 0.00 4.24
105 106 2.271800 CACTGACCGGATCTAAACTGC 58.728 52.381 9.46 0.00 0.00 4.40
106 107 2.271800 GCACTGACCGGATCTAAACTG 58.728 52.381 9.46 0.00 0.00 3.16
107 108 1.899814 TGCACTGACCGGATCTAAACT 59.100 47.619 9.46 0.00 0.00 2.66
108 109 2.380084 TGCACTGACCGGATCTAAAC 57.620 50.000 9.46 0.00 0.00 2.01
109 110 2.695359 GTTGCACTGACCGGATCTAAA 58.305 47.619 9.46 0.00 0.00 1.85
110 111 1.403647 CGTTGCACTGACCGGATCTAA 60.404 52.381 9.46 0.00 0.00 2.10
111 112 0.172578 CGTTGCACTGACCGGATCTA 59.827 55.000 9.46 0.00 0.00 1.98
112 113 1.079819 CGTTGCACTGACCGGATCT 60.080 57.895 9.46 0.00 0.00 2.75
113 114 2.100631 CCGTTGCACTGACCGGATC 61.101 63.158 9.46 2.18 43.01 3.36
114 115 2.047274 CCGTTGCACTGACCGGAT 60.047 61.111 9.46 0.00 43.01 4.18
115 116 3.096633 AACCGTTGCACTGACCGGA 62.097 57.895 9.46 0.00 43.01 5.14
116 117 2.590575 AACCGTTGCACTGACCGG 60.591 61.111 0.00 0.00 45.72 5.28
117 118 2.631428 CAACCGTTGCACTGACCG 59.369 61.111 0.00 0.00 0.00 4.79
118 119 2.551912 CCCAACCGTTGCACTGACC 61.552 63.158 5.68 0.00 0.00 4.02
119 120 1.098712 TTCCCAACCGTTGCACTGAC 61.099 55.000 5.68 0.00 0.00 3.51
120 121 1.098712 GTTCCCAACCGTTGCACTGA 61.099 55.000 5.68 0.00 0.00 3.41
121 122 1.358759 GTTCCCAACCGTTGCACTG 59.641 57.895 5.68 0.00 0.00 3.66
122 123 0.681564 TTGTTCCCAACCGTTGCACT 60.682 50.000 5.68 0.00 0.00 4.40
123 124 0.387565 ATTGTTCCCAACCGTTGCAC 59.612 50.000 5.68 3.14 32.26 4.57
124 125 1.982660 TATTGTTCCCAACCGTTGCA 58.017 45.000 5.68 0.00 32.26 4.08
125 126 3.372660 TTTATTGTTCCCAACCGTTGC 57.627 42.857 5.68 0.00 32.26 4.17
126 127 4.241681 CCATTTATTGTTCCCAACCGTTG 58.758 43.478 4.12 4.12 32.26 4.10
127 128 3.259625 CCCATTTATTGTTCCCAACCGTT 59.740 43.478 0.00 0.00 32.26 4.44
128 129 2.829120 CCCATTTATTGTTCCCAACCGT 59.171 45.455 0.00 0.00 32.26 4.83
129 130 2.418060 GCCCATTTATTGTTCCCAACCG 60.418 50.000 0.00 0.00 32.26 4.44
130 131 2.837591 AGCCCATTTATTGTTCCCAACC 59.162 45.455 0.00 0.00 32.26 3.77
131 132 3.118775 GGAGCCCATTTATTGTTCCCAAC 60.119 47.826 0.00 0.00 32.26 3.77
132 133 3.103742 GGAGCCCATTTATTGTTCCCAA 58.896 45.455 0.00 0.00 34.45 4.12
133 134 2.043664 TGGAGCCCATTTATTGTTCCCA 59.956 45.455 0.00 0.00 0.00 4.37
134 135 2.745968 TGGAGCCCATTTATTGTTCCC 58.254 47.619 0.00 0.00 0.00 3.97
135 136 3.428862 CGTTGGAGCCCATTTATTGTTCC 60.429 47.826 0.00 0.00 31.53 3.62
136 137 3.192633 ACGTTGGAGCCCATTTATTGTTC 59.807 43.478 0.00 0.00 31.53 3.18
137 138 3.161866 ACGTTGGAGCCCATTTATTGTT 58.838 40.909 0.00 0.00 31.53 2.83
138 139 2.752903 GACGTTGGAGCCCATTTATTGT 59.247 45.455 0.00 0.00 31.53 2.71
139 140 2.223249 CGACGTTGGAGCCCATTTATTG 60.223 50.000 0.00 0.00 31.53 1.90
140 141 2.014128 CGACGTTGGAGCCCATTTATT 58.986 47.619 0.00 0.00 31.53 1.40
141 142 1.663695 CGACGTTGGAGCCCATTTAT 58.336 50.000 0.00 0.00 31.53 1.40
142 143 1.022451 GCGACGTTGGAGCCCATTTA 61.022 55.000 4.64 0.00 31.53 1.40
143 144 2.332654 GCGACGTTGGAGCCCATTT 61.333 57.895 4.64 0.00 31.53 2.32
144 145 2.746277 GCGACGTTGGAGCCCATT 60.746 61.111 4.64 0.00 31.53 3.16
145 146 4.778143 GGCGACGTTGGAGCCCAT 62.778 66.667 4.64 0.00 44.80 4.00
158 159 3.982372 GATGCTGGACGAACGGCGA 62.982 63.158 16.62 0.00 45.70 5.54
159 160 3.554692 GATGCTGGACGAACGGCG 61.555 66.667 4.80 4.80 45.70 6.46
160 161 2.125512 AGATGCTGGACGAACGGC 60.126 61.111 7.76 7.76 43.06 5.68
161 162 1.874019 CGAGATGCTGGACGAACGG 60.874 63.158 0.00 0.00 0.00 4.44
162 163 1.874019 CCGAGATGCTGGACGAACG 60.874 63.158 0.00 0.00 0.00 3.95
163 164 0.103208 ATCCGAGATGCTGGACGAAC 59.897 55.000 0.00 0.00 37.02 3.95
164 165 0.824109 AATCCGAGATGCTGGACGAA 59.176 50.000 0.00 0.00 37.02 3.85
165 166 0.824109 AAATCCGAGATGCTGGACGA 59.176 50.000 0.00 0.00 37.02 4.20
166 167 0.933097 CAAATCCGAGATGCTGGACG 59.067 55.000 0.00 0.00 37.02 4.79
167 168 1.303309 CCAAATCCGAGATGCTGGAC 58.697 55.000 8.44 0.00 37.02 4.02
168 169 0.464373 GCCAAATCCGAGATGCTGGA 60.464 55.000 14.35 0.00 38.95 3.86
169 170 1.779025 CGCCAAATCCGAGATGCTGG 61.779 60.000 9.25 9.25 0.00 4.85
170 171 1.645455 CGCCAAATCCGAGATGCTG 59.355 57.895 0.00 0.00 0.00 4.41
171 172 1.524621 CCGCCAAATCCGAGATGCT 60.525 57.895 0.00 0.00 0.00 3.79
172 173 3.025619 CCGCCAAATCCGAGATGC 58.974 61.111 0.00 0.00 0.00 3.91
173 174 2.546494 GGCCGCCAAATCCGAGATG 61.546 63.158 3.91 0.00 0.00 2.90
174 175 2.203209 GGCCGCCAAATCCGAGAT 60.203 61.111 3.91 0.00 0.00 2.75
175 176 4.483243 GGGCCGCCAAATCCGAGA 62.483 66.667 12.58 0.00 0.00 4.04
176 177 2.674563 TATGGGCCGCCAAATCCGAG 62.675 60.000 12.58 0.00 0.00 4.63
177 178 2.272230 TTATGGGCCGCCAAATCCGA 62.272 55.000 12.58 0.00 0.00 4.55
178 179 1.178534 ATTATGGGCCGCCAAATCCG 61.179 55.000 12.58 0.00 0.00 4.18
179 180 1.047801 AATTATGGGCCGCCAAATCC 58.952 50.000 12.58 0.00 0.00 3.01
180 181 2.158971 ACAAATTATGGGCCGCCAAATC 60.159 45.455 12.58 0.00 0.00 2.17
181 182 1.836802 ACAAATTATGGGCCGCCAAAT 59.163 42.857 12.58 6.90 0.00 2.32
182 183 1.066573 CACAAATTATGGGCCGCCAAA 60.067 47.619 12.58 2.52 0.00 3.28
183 184 0.534412 CACAAATTATGGGCCGCCAA 59.466 50.000 12.58 0.00 0.00 4.52
184 185 2.197250 CACAAATTATGGGCCGCCA 58.803 52.632 12.58 0.00 0.00 5.69
190 191 2.752354 TGACGGAAGCACAAATTATGGG 59.248 45.455 0.00 0.00 34.65 4.00
191 192 3.689161 TCTGACGGAAGCACAAATTATGG 59.311 43.478 0.00 0.00 0.00 2.74
192 193 4.728882 GCTCTGACGGAAGCACAAATTATG 60.729 45.833 0.00 0.00 0.00 1.90
193 194 3.375299 GCTCTGACGGAAGCACAAATTAT 59.625 43.478 0.00 0.00 0.00 1.28
194 195 2.742053 GCTCTGACGGAAGCACAAATTA 59.258 45.455 0.00 0.00 0.00 1.40
195 196 1.537202 GCTCTGACGGAAGCACAAATT 59.463 47.619 0.00 0.00 0.00 1.82
196 197 1.160137 GCTCTGACGGAAGCACAAAT 58.840 50.000 0.00 0.00 0.00 2.32
197 198 1.221466 CGCTCTGACGGAAGCACAAA 61.221 55.000 6.55 0.00 0.00 2.83
198 199 1.664649 CGCTCTGACGGAAGCACAA 60.665 57.895 6.55 0.00 0.00 3.33
199 200 2.049156 CGCTCTGACGGAAGCACA 60.049 61.111 6.55 0.00 0.00 4.57
207 208 0.662374 ACGTTGTTACCGCTCTGACG 60.662 55.000 0.00 0.00 35.39 4.35
208 209 0.782384 CACGTTGTTACCGCTCTGAC 59.218 55.000 0.00 0.00 0.00 3.51
209 210 0.669619 TCACGTTGTTACCGCTCTGA 59.330 50.000 0.00 0.00 0.00 3.27
210 211 0.782384 GTCACGTTGTTACCGCTCTG 59.218 55.000 0.00 0.00 0.00 3.35
211 212 0.672342 AGTCACGTTGTTACCGCTCT 59.328 50.000 0.00 0.00 0.00 4.09
212 213 0.782384 CAGTCACGTTGTTACCGCTC 59.218 55.000 0.00 0.00 0.00 5.03
213 214 0.386476 TCAGTCACGTTGTTACCGCT 59.614 50.000 0.00 0.00 0.00 5.52
214 215 0.505655 GTCAGTCACGTTGTTACCGC 59.494 55.000 0.00 0.00 0.00 5.68
215 216 0.774098 CGTCAGTCACGTTGTTACCG 59.226 55.000 0.00 0.00 44.07 4.02
253 254 5.768164 TCTTTTCTTTACCAGGGTTGATGAC 59.232 40.000 0.00 0.00 0.00 3.06
254 255 5.947663 TCTTTTCTTTACCAGGGTTGATGA 58.052 37.500 0.00 0.00 0.00 2.92
255 256 6.648879 TTCTTTTCTTTACCAGGGTTGATG 57.351 37.500 0.00 0.00 0.00 3.07
256 257 8.170730 AGTATTCTTTTCTTTACCAGGGTTGAT 58.829 33.333 0.00 0.00 0.00 2.57
257 258 7.523415 AGTATTCTTTTCTTTACCAGGGTTGA 58.477 34.615 0.00 0.00 0.00 3.18
258 259 7.761038 AGTATTCTTTTCTTTACCAGGGTTG 57.239 36.000 0.00 0.00 0.00 3.77
259 260 7.232737 CCAAGTATTCTTTTCTTTACCAGGGTT 59.767 37.037 0.00 0.00 0.00 4.11
260 261 6.719829 CCAAGTATTCTTTTCTTTACCAGGGT 59.280 38.462 0.00 0.00 0.00 4.34
261 262 6.152831 CCCAAGTATTCTTTTCTTTACCAGGG 59.847 42.308 0.00 0.00 0.00 4.45
262 263 6.350194 GCCCAAGTATTCTTTTCTTTACCAGG 60.350 42.308 0.00 0.00 0.00 4.45
263 264 6.350194 GGCCCAAGTATTCTTTTCTTTACCAG 60.350 42.308 0.00 0.00 0.00 4.00
264 265 5.479027 GGCCCAAGTATTCTTTTCTTTACCA 59.521 40.000 0.00 0.00 0.00 3.25
265 266 5.715279 AGGCCCAAGTATTCTTTTCTTTACC 59.285 40.000 0.00 0.00 0.00 2.85
266 267 6.835819 AGGCCCAAGTATTCTTTTCTTTAC 57.164 37.500 0.00 0.00 0.00 2.01
267 268 7.007723 TGAAGGCCCAAGTATTCTTTTCTTTA 58.992 34.615 0.00 0.00 0.00 1.85
268 269 5.838521 TGAAGGCCCAAGTATTCTTTTCTTT 59.161 36.000 0.00 0.00 0.00 2.52
269 270 5.243954 GTGAAGGCCCAAGTATTCTTTTCTT 59.756 40.000 0.00 0.00 0.00 2.52
270 271 4.767409 GTGAAGGCCCAAGTATTCTTTTCT 59.233 41.667 0.00 0.00 0.00 2.52
271 272 4.379499 CGTGAAGGCCCAAGTATTCTTTTC 60.379 45.833 0.00 0.00 0.00 2.29
272 273 3.506067 CGTGAAGGCCCAAGTATTCTTTT 59.494 43.478 0.00 0.00 0.00 2.27
273 274 3.081804 CGTGAAGGCCCAAGTATTCTTT 58.918 45.455 0.00 0.00 0.00 2.52
274 275 2.039879 ACGTGAAGGCCCAAGTATTCTT 59.960 45.455 0.00 0.00 0.00 2.52
275 276 1.628846 ACGTGAAGGCCCAAGTATTCT 59.371 47.619 0.00 0.00 0.00 2.40
276 277 1.737793 CACGTGAAGGCCCAAGTATTC 59.262 52.381 10.90 0.00 0.00 1.75
277 278 1.349688 TCACGTGAAGGCCCAAGTATT 59.650 47.619 17.62 0.00 0.00 1.89
278 279 0.981183 TCACGTGAAGGCCCAAGTAT 59.019 50.000 17.62 0.00 0.00 2.12
279 280 0.981183 ATCACGTGAAGGCCCAAGTA 59.019 50.000 24.13 0.00 0.00 2.24
280 281 0.606401 CATCACGTGAAGGCCCAAGT 60.606 55.000 24.13 0.00 0.00 3.16
281 282 1.308069 CCATCACGTGAAGGCCCAAG 61.308 60.000 25.31 2.67 0.00 3.61
282 283 1.303236 CCATCACGTGAAGGCCCAA 60.303 57.895 25.31 0.00 0.00 4.12
283 284 2.350895 CCATCACGTGAAGGCCCA 59.649 61.111 25.31 0.00 0.00 5.36
284 285 2.438434 CCCATCACGTGAAGGCCC 60.438 66.667 29.85 0.00 31.90 5.80
285 286 1.745489 GACCCATCACGTGAAGGCC 60.745 63.158 29.85 20.46 31.90 5.19
286 287 1.745489 GGACCCATCACGTGAAGGC 60.745 63.158 29.85 19.99 31.90 4.35
287 288 0.253044 ATGGACCCATCACGTGAAGG 59.747 55.000 28.65 28.65 32.98 3.46
288 289 1.066215 TCATGGACCCATCACGTGAAG 60.066 52.381 24.13 18.59 33.90 3.02
289 290 0.980423 TCATGGACCCATCACGTGAA 59.020 50.000 24.13 4.03 33.90 3.18
290 291 1.138859 GATCATGGACCCATCACGTGA 59.861 52.381 22.48 22.48 33.90 4.35
291 292 1.139654 AGATCATGGACCCATCACGTG 59.860 52.381 9.94 9.94 33.90 4.49
292 293 1.414181 GAGATCATGGACCCATCACGT 59.586 52.381 0.00 0.00 33.90 4.49
293 294 1.603931 CGAGATCATGGACCCATCACG 60.604 57.143 0.00 0.00 33.90 4.35
294 295 1.688735 TCGAGATCATGGACCCATCAC 59.311 52.381 0.00 0.00 33.90 3.06
295 296 1.966354 CTCGAGATCATGGACCCATCA 59.034 52.381 6.58 0.00 33.90 3.07
296 297 1.274728 CCTCGAGATCATGGACCCATC 59.725 57.143 15.71 0.00 33.90 3.51
297 298 1.133041 TCCTCGAGATCATGGACCCAT 60.133 52.381 15.71 0.00 37.08 4.00
298 299 0.261696 TCCTCGAGATCATGGACCCA 59.738 55.000 15.71 0.00 0.00 4.51
299 300 0.965439 CTCCTCGAGATCATGGACCC 59.035 60.000 15.71 0.00 0.00 4.46
300 301 1.885887 CTCTCCTCGAGATCATGGACC 59.114 57.143 15.71 0.00 42.62 4.46
301 302 1.269448 GCTCTCCTCGAGATCATGGAC 59.731 57.143 15.71 0.00 42.62 4.02
302 303 1.614996 GCTCTCCTCGAGATCATGGA 58.385 55.000 15.71 0.62 42.62 3.41
303 304 0.240678 CGCTCTCCTCGAGATCATGG 59.759 60.000 15.71 0.00 42.62 3.66
304 305 1.233919 TCGCTCTCCTCGAGATCATG 58.766 55.000 15.71 0.00 42.62 3.07
305 306 1.606668 GTTCGCTCTCCTCGAGATCAT 59.393 52.381 15.71 0.00 42.62 2.45
306 307 1.018148 GTTCGCTCTCCTCGAGATCA 58.982 55.000 15.71 0.00 42.62 2.92
307 308 0.041663 CGTTCGCTCTCCTCGAGATC 60.042 60.000 15.71 0.00 42.62 2.75
308 309 1.440938 CCGTTCGCTCTCCTCGAGAT 61.441 60.000 15.71 0.00 42.62 2.75
309 310 2.107292 CCGTTCGCTCTCCTCGAGA 61.107 63.158 15.71 0.00 42.62 4.04
310 311 2.405594 CCGTTCGCTCTCCTCGAG 59.594 66.667 5.13 5.13 42.88 4.04
311 312 3.132139 CCCGTTCGCTCTCCTCGA 61.132 66.667 0.00 0.00 0.00 4.04
312 313 4.194720 CCCCGTTCGCTCTCCTCG 62.195 72.222 0.00 0.00 0.00 4.63
313 314 2.128507 ATCCCCGTTCGCTCTCCTC 61.129 63.158 0.00 0.00 0.00 3.71
314 315 2.042843 ATCCCCGTTCGCTCTCCT 60.043 61.111 0.00 0.00 0.00 3.69
315 316 1.749334 ATCATCCCCGTTCGCTCTCC 61.749 60.000 0.00 0.00 0.00 3.71
316 317 0.105039 AATCATCCCCGTTCGCTCTC 59.895 55.000 0.00 0.00 0.00 3.20
317 318 0.105039 GAATCATCCCCGTTCGCTCT 59.895 55.000 0.00 0.00 0.00 4.09
318 319 0.105039 AGAATCATCCCCGTTCGCTC 59.895 55.000 0.00 0.00 0.00 5.03
319 320 0.179073 CAGAATCATCCCCGTTCGCT 60.179 55.000 0.00 0.00 0.00 4.93
320 321 1.776034 GCAGAATCATCCCCGTTCGC 61.776 60.000 0.00 0.00 0.00 4.70
321 322 1.490693 CGCAGAATCATCCCCGTTCG 61.491 60.000 0.00 0.00 0.00 3.95
322 323 0.179084 TCGCAGAATCATCCCCGTTC 60.179 55.000 0.00 0.00 0.00 3.95
323 324 0.179073 CTCGCAGAATCATCCCCGTT 60.179 55.000 0.00 0.00 34.09 4.44
324 325 1.443407 CTCGCAGAATCATCCCCGT 59.557 57.895 0.00 0.00 34.09 5.28
325 326 1.958205 GCTCGCAGAATCATCCCCG 60.958 63.158 0.00 0.00 34.09 5.73
326 327 0.250640 ATGCTCGCAGAATCATCCCC 60.251 55.000 0.00 0.00 34.09 4.81
327 328 2.462456 TATGCTCGCAGAATCATCCC 57.538 50.000 0.00 0.00 34.09 3.85
328 329 3.124806 CACATATGCTCGCAGAATCATCC 59.875 47.826 1.58 0.00 34.09 3.51
329 330 4.323537 CACATATGCTCGCAGAATCATC 57.676 45.455 1.58 0.00 34.09 2.92
350 351 1.011451 GTCCTGTTCTGTGCTCGAGC 61.011 60.000 30.42 30.42 42.50 5.03
351 352 0.600557 AGTCCTGTTCTGTGCTCGAG 59.399 55.000 8.45 8.45 0.00 4.04
352 353 1.040646 AAGTCCTGTTCTGTGCTCGA 58.959 50.000 0.00 0.00 0.00 4.04
353 354 1.795286 GAAAGTCCTGTTCTGTGCTCG 59.205 52.381 0.00 0.00 0.00 5.03
354 355 1.795286 CGAAAGTCCTGTTCTGTGCTC 59.205 52.381 0.00 0.00 0.00 4.26
355 356 1.541233 CCGAAAGTCCTGTTCTGTGCT 60.541 52.381 0.00 0.00 0.00 4.40
356 357 0.868406 CCGAAAGTCCTGTTCTGTGC 59.132 55.000 0.00 0.00 0.00 4.57
357 358 2.526304 TCCGAAAGTCCTGTTCTGTG 57.474 50.000 0.00 0.00 0.00 3.66
358 359 2.169769 TGTTCCGAAAGTCCTGTTCTGT 59.830 45.455 0.00 0.00 0.00 3.41
359 360 2.544267 GTGTTCCGAAAGTCCTGTTCTG 59.456 50.000 0.00 0.00 0.00 3.02
360 361 2.434702 AGTGTTCCGAAAGTCCTGTTCT 59.565 45.455 0.00 0.00 0.00 3.01
361 362 2.801111 GAGTGTTCCGAAAGTCCTGTTC 59.199 50.000 0.00 0.00 0.00 3.18
362 363 2.434702 AGAGTGTTCCGAAAGTCCTGTT 59.565 45.455 0.00 0.00 0.00 3.16
363 364 2.040178 AGAGTGTTCCGAAAGTCCTGT 58.960 47.619 0.00 0.00 0.00 4.00
364 365 2.408050 CAGAGTGTTCCGAAAGTCCTG 58.592 52.381 0.00 0.00 0.00 3.86
365 366 1.344763 CCAGAGTGTTCCGAAAGTCCT 59.655 52.381 0.00 0.00 0.00 3.85
366 367 1.797025 CCAGAGTGTTCCGAAAGTCC 58.203 55.000 0.00 0.00 0.00 3.85
367 368 1.149148 GCCAGAGTGTTCCGAAAGTC 58.851 55.000 0.00 0.00 0.00 3.01
368 369 0.759346 AGCCAGAGTGTTCCGAAAGT 59.241 50.000 0.00 0.00 0.00 2.66
369 370 1.884235 AAGCCAGAGTGTTCCGAAAG 58.116 50.000 0.00 0.00 0.00 2.62
370 371 2.158813 AGAAAGCCAGAGTGTTCCGAAA 60.159 45.455 0.00 0.00 0.00 3.46
371 372 1.416401 AGAAAGCCAGAGTGTTCCGAA 59.584 47.619 0.00 0.00 0.00 4.30
372 373 1.048601 AGAAAGCCAGAGTGTTCCGA 58.951 50.000 0.00 0.00 0.00 4.55
373 374 1.884235 AAGAAAGCCAGAGTGTTCCG 58.116 50.000 0.00 0.00 0.00 4.30
374 375 3.632145 TCAAAAGAAAGCCAGAGTGTTCC 59.368 43.478 0.00 0.00 0.00 3.62
378 379 3.629398 ACTGTCAAAAGAAAGCCAGAGTG 59.371 43.478 0.00 0.00 0.00 3.51
385 386 5.030936 GTGTTCTCACTGTCAAAAGAAAGC 58.969 41.667 0.00 0.00 40.98 3.51
439 440 6.889722 TCATGTCTTTCCCCGATTTAAATTCT 59.110 34.615 1.43 0.00 0.00 2.40
440 441 7.095695 TCATGTCTTTCCCCGATTTAAATTC 57.904 36.000 1.43 0.00 0.00 2.17
441 442 7.178451 ACTTCATGTCTTTCCCCGATTTAAATT 59.822 33.333 1.43 0.00 0.00 1.82
442 443 6.663523 ACTTCATGTCTTTCCCCGATTTAAAT 59.336 34.615 0.00 0.00 0.00 1.40
445 446 5.174037 ACTTCATGTCTTTCCCCGATTTA 57.826 39.130 0.00 0.00 0.00 1.40
492 494 3.036577 TCACGGTGAGTCGGTGAC 58.963 61.111 6.76 0.00 46.37 3.67
494 496 0.528901 TTTGTCACGGTGAGTCGGTG 60.529 55.000 11.83 3.19 44.96 4.94
495 497 0.529119 GTTTGTCACGGTGAGTCGGT 60.529 55.000 11.83 0.00 0.00 4.69
496 498 0.528901 TGTTTGTCACGGTGAGTCGG 60.529 55.000 11.83 0.00 0.00 4.79
497 499 0.575390 GTGTTTGTCACGGTGAGTCG 59.425 55.000 11.83 0.00 37.31 4.18
893 895 4.148825 CCGCTGGGGAGGAAGACG 62.149 72.222 4.46 0.00 38.47 4.18
937 959 1.338136 GGATTGCGGAGGAAGGGAGA 61.338 60.000 0.00 0.00 44.16 3.71
938 960 1.147153 GGATTGCGGAGGAAGGGAG 59.853 63.158 0.00 0.00 44.16 4.30
939 961 1.306997 AGGATTGCGGAGGAAGGGA 60.307 57.895 0.00 0.00 44.16 4.20
940 962 1.147153 GAGGATTGCGGAGGAAGGG 59.853 63.158 0.00 0.00 44.16 3.95
941 963 1.147153 GGAGGATTGCGGAGGAAGG 59.853 63.158 0.00 0.00 44.16 3.46
942 964 1.147153 GGGAGGATTGCGGAGGAAG 59.853 63.158 0.00 0.00 44.16 3.46
943 965 2.375345 GGGGAGGATTGCGGAGGAA 61.375 63.158 0.00 0.00 45.69 3.36
1464 1502 2.968206 CTGGCCTCTTTTGCTGCC 59.032 61.111 3.32 0.00 44.27 4.85
1932 2229 4.877823 CCAAGACAACAGCAGCAATAGATA 59.122 41.667 0.00 0.00 0.00 1.98
2014 2313 8.687292 ATGCATATCAAGTCAATACTCAATGT 57.313 30.769 0.00 0.00 33.75 2.71
2147 2446 5.647225 AGTGTAAAAGTAAAACCACGACCAA 59.353 36.000 0.00 0.00 0.00 3.67
2223 2522 6.528072 GCTATCCAAACTATGCAGAACAAAAC 59.472 38.462 0.00 0.00 0.00 2.43
2281 2585 8.755018 GCCAAATTCTAAATGGATTGTTTATCG 58.245 33.333 0.00 0.00 36.27 2.92
2432 2736 1.479323 GCAACCAGATCACTACGGGTA 59.521 52.381 0.00 0.00 35.03 3.69
2459 2763 6.128172 CCGGTATTGATTGAATTCTATCAGGC 60.128 42.308 24.80 19.38 38.80 4.85
2561 2865 6.246163 TGATCACTAACCAGAAGTAGAGTCA 58.754 40.000 0.00 0.00 0.00 3.41
2613 2917 4.659111 TCATTCCAAAGCCAATGCATAG 57.341 40.909 0.00 0.00 41.13 2.23
2627 2937 1.064463 GGACTTGGCCAGATCATTCCA 60.064 52.381 17.48 0.00 0.00 3.53
2650 2960 1.080569 GCAATGCACACGGGGAAAG 60.081 57.895 0.00 0.00 0.00 2.62
2956 3266 9.749490 GAATGCATGTTCAATTCAAATTTACAG 57.251 29.630 0.00 0.00 0.00 2.74
2958 3268 8.719648 TGGAATGCATGTTCAATTCAAATTTAC 58.280 29.630 0.00 0.00 0.00 2.01
3084 3397 0.389166 GTTCAGCTCGTGACCCTCAG 60.389 60.000 0.00 0.00 33.71 3.35
3120 3433 1.568612 CCATCTGTGTGTGTCGTGGC 61.569 60.000 0.00 0.00 0.00 5.01
3226 3543 8.831715 AAACATTAGATTGGTGAATCAAAACC 57.168 30.769 0.00 0.00 40.59 3.27
3296 3626 6.759356 TCCTGCAGAATATCATTGCAAAAATG 59.241 34.615 17.39 0.00 46.08 2.32
3297 3627 6.880484 TCCTGCAGAATATCATTGCAAAAAT 58.120 32.000 17.39 2.45 46.08 1.82
3434 3764 8.267183 TCCTGATGATCACAACAATTAGTATGT 58.733 33.333 0.00 0.00 0.00 2.29
3506 3853 1.079750 GACGGTGGCCAGAGAACTC 60.080 63.158 5.11 0.00 0.00 3.01
3573 3925 5.554822 TCCACCTGCATTTATCGTTTTAC 57.445 39.130 0.00 0.00 0.00 2.01
3668 4022 3.835395 AGTCAAGGAAAGTACAGGGAGAG 59.165 47.826 0.00 0.00 0.00 3.20
3701 4055 2.034104 TGCATGAGCTCACCAATCTC 57.966 50.000 20.97 3.82 42.74 2.75
4006 4470 4.454728 GCATGGAGCAAAACCATTAGAA 57.545 40.909 0.00 0.00 44.51 2.10
4095 4559 3.719268 ATCCAATGCAAGACCACTACA 57.281 42.857 0.00 0.00 0.00 2.74
4287 4761 3.365220 GCGTTTGTACTCTCACTAAGCAG 59.635 47.826 0.00 0.00 0.00 4.24
4296 4770 5.147162 CAAAAGAATGGCGTTTGTACTCTC 58.853 41.667 0.00 0.00 39.92 3.20
4308 4782 7.597386 AGACAGATTTAGAACAAAAGAATGGC 58.403 34.615 0.00 0.00 0.00 4.40
4327 4801 6.268617 AGGAAATGCAGCTATACATAGACAGA 59.731 38.462 0.00 0.00 32.05 3.41
4331 4805 6.295518 CCTGAGGAAATGCAGCTATACATAGA 60.296 42.308 0.00 0.00 32.05 1.98
4341 4815 0.969409 AAGGCCTGAGGAAATGCAGC 60.969 55.000 5.69 0.00 0.00 5.25
4342 4816 1.475682 GAAAGGCCTGAGGAAATGCAG 59.524 52.381 5.69 0.00 0.00 4.41
4346 4821 4.085009 CTCAAAGAAAGGCCTGAGGAAAT 58.915 43.478 5.69 0.00 33.20 2.17
4349 4824 2.057922 ACTCAAAGAAAGGCCTGAGGA 58.942 47.619 18.60 6.13 39.71 3.71
4353 4828 0.600057 GCCACTCAAAGAAAGGCCTG 59.400 55.000 5.69 0.00 39.42 4.85
4354 4829 0.185901 TGCCACTCAAAGAAAGGCCT 59.814 50.000 0.00 0.00 44.60 5.19
4378 4853 2.029649 GCTAACTGTGACCCGTGAGTTA 60.030 50.000 0.00 0.00 31.25 2.24
4386 4861 1.923909 AGGGGGCTAACTGTGACCC 60.924 63.158 0.28 0.28 42.01 4.46
4399 4874 4.619227 AACACGACACGCAGGGGG 62.619 66.667 0.00 0.00 0.00 5.40
4406 4881 1.151777 AGTCAAGCCAACACGACACG 61.152 55.000 0.00 0.00 0.00 4.49
4421 4899 2.620367 GGATTTGTACCCATGCCAGTCA 60.620 50.000 0.00 0.00 0.00 3.41
4425 4903 2.612285 TTGGATTTGTACCCATGCCA 57.388 45.000 0.00 0.00 31.66 4.92
4433 4911 5.576774 GCATGTTTAGCCTTTGGATTTGTAC 59.423 40.000 0.00 0.00 0.00 2.90
4503 4982 7.920151 GCCATTGTTGTCATAGTATAATGCAAA 59.080 33.333 0.00 0.00 30.34 3.68
4528 5010 1.687494 CTGCTCGTAGAACGCAAGGC 61.687 60.000 0.00 0.00 42.21 4.35
4531 5013 1.668919 CCTTCTGCTCGTAGAACGCAA 60.669 52.381 0.00 0.00 42.21 4.85
4541 5023 0.385751 TATTCCTCGCCTTCTGCTCG 59.614 55.000 0.00 0.00 38.05 5.03
4543 5025 0.466124 GGTATTCCTCGCCTTCTGCT 59.534 55.000 0.00 0.00 38.05 4.24
4560 5042 4.183865 CACTCGTGTAACATGATCATGGT 58.816 43.478 33.31 30.96 42.91 3.55
4734 5269 0.680921 GCAATGGCAGCTCCCACTAA 60.681 55.000 0.00 0.00 37.79 2.24
4800 5339 1.536922 CCGAGCATCTACATTGACGCT 60.537 52.381 0.00 0.00 38.25 5.07
4857 5416 8.653191 TCACCCTAAAATCATATACCATACGTT 58.347 33.333 0.00 0.00 0.00 3.99
4896 5457 1.598130 GGGTCGCACAAGAAGCTGT 60.598 57.895 0.00 0.00 0.00 4.40
4903 5464 1.665679 GTGACATATGGGTCGCACAAG 59.334 52.381 7.80 0.00 45.32 3.16
4916 5477 5.596361 ACCTGAATTTGTGGTTTGTGACATA 59.404 36.000 0.00 0.00 0.00 2.29
5011 5573 9.853177 AATCTTGTAGAAATAGGGAATCGAAAT 57.147 29.630 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.