Multiple sequence alignment - TraesCS1A01G379600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G379600 chr1A 100.000 5164 0 0 1 5164 551538888 551544051 0.000000e+00 9537.0
1 TraesCS1A01G379600 chr1A 88.235 340 32 6 4629 4964 352857438 352857103 2.900000e-107 399.0
2 TraesCS1A01G379600 chr1A 88.462 104 10 1 2382 2483 577481204 577481101 1.950000e-24 124.0
3 TraesCS1A01G379600 chr1B 92.823 1672 66 21 2472 4096 631832000 631833664 0.000000e+00 2374.0
4 TraesCS1A01G379600 chr1B 90.094 1272 68 26 1109 2351 631829214 631830456 0.000000e+00 1598.0
5 TraesCS1A01G379600 chr1B 91.882 1047 55 10 2472 3507 631819926 631818899 0.000000e+00 1435.0
6 TraesCS1A01G379600 chr1B 88.835 1039 57 23 1209 2221 631821722 631820717 0.000000e+00 1221.0
7 TraesCS1A01G379600 chr1B 95.469 618 21 5 3484 4099 631818866 631818254 0.000000e+00 979.0
8 TraesCS1A01G379600 chr1B 94.434 539 25 1 4102 4635 631834091 631834629 0.000000e+00 824.0
9 TraesCS1A01G379600 chr1B 93.285 417 24 2 4218 4634 631817420 631817008 3.420000e-171 612.0
10 TraesCS1A01G379600 chr1B 91.092 348 25 6 4628 4974 631816978 631816636 2.820000e-127 466.0
11 TraesCS1A01G379600 chr1B 87.059 340 36 6 4629 4964 381387213 381386878 1.360000e-100 377.0
12 TraesCS1A01G379600 chr1B 90.119 253 21 2 4725 4974 631848703 631848954 4.990000e-85 326.0
13 TraesCS1A01G379600 chr1B 90.789 76 3 1 4102 4177 631817837 631817766 1.180000e-16 99.0
14 TraesCS1A01G379600 chr1B 100.000 37 0 0 2344 2380 631820654 631820618 9.280000e-08 69.4
15 TraesCS1A01G379600 chr1D 92.096 1164 55 15 1109 2245 459830970 459832123 0.000000e+00 1605.0
16 TraesCS1A01G379600 chr1D 94.372 995 35 6 2472 3446 459836435 459837428 0.000000e+00 1507.0
17 TraesCS1A01G379600 chr1D 95.570 745 30 2 4 748 228196037 228195296 0.000000e+00 1190.0
18 TraesCS1A01G379600 chr1D 96.260 615 16 5 3484 4096 459837510 459838119 0.000000e+00 1002.0
19 TraesCS1A01G379600 chr1D 93.284 268 14 2 4218 4485 459838958 459839221 4.850000e-105 392.0
20 TraesCS1A01G379600 chr1D 87.059 340 36 6 4629 4964 280686991 280686656 1.360000e-100 377.0
21 TraesCS1A01G379600 chr1D 91.204 216 13 4 4629 4840 459839730 459839943 6.540000e-74 289.0
22 TraesCS1A01G379600 chr1D 86.957 184 11 6 2191 2374 459835154 459835324 1.470000e-45 195.0
23 TraesCS1A01G379600 chr1D 92.537 134 8 1 4841 4974 459840005 459840136 1.900000e-44 191.0
24 TraesCS1A01G379600 chr1D 84.375 160 11 6 4995 5142 459840244 459840401 1.500000e-30 145.0
25 TraesCS1A01G379600 chr1D 98.485 66 1 0 4570 4635 459839636 459839701 3.270000e-22 117.0
26 TraesCS1A01G379600 chr1D 90.667 75 3 1 4103 4177 459838544 459838614 4.260000e-16 97.1
27 TraesCS1A01G379600 chr1D 100.000 46 0 0 4533 4578 459839410 459839455 9.210000e-13 86.1
28 TraesCS1A01G379600 chr7A 96.366 743 24 2 3 745 606250185 606250924 0.000000e+00 1219.0
29 TraesCS1A01G379600 chr7A 76.083 1200 226 35 2541 3693 25752555 25751370 2.090000e-158 569.0
30 TraesCS1A01G379600 chr7A 86.311 431 59 0 1586 2016 26030126 26030556 2.180000e-128 470.0
31 TraesCS1A01G379600 chr7A 85.845 438 62 0 1579 2016 25754831 25754394 2.820000e-127 466.0
32 TraesCS1A01G379600 chr7A 85.906 298 41 1 3798 4094 25751297 25751000 3.000000e-82 316.0
33 TraesCS1A01G379600 chr7A 85.714 301 39 2 3792 4091 37721645 37721942 1.080000e-81 315.0
34 TraesCS1A01G379600 chr7A 82.759 203 28 5 3499 3698 37721385 37721583 1.910000e-39 174.0
35 TraesCS1A01G379600 chr7A 82.199 191 27 5 3505 3693 26032504 26032689 1.920000e-34 158.0
36 TraesCS1A01G379600 chr7A 93.269 104 5 2 2094 2196 26040008 26040110 8.960000e-33 152.0
37 TraesCS1A01G379600 chr7A 94.505 91 2 2 2379 2466 471816095 471816185 2.510000e-28 137.0
38 TraesCS1A01G379600 chr7A 89.899 99 8 1 2370 2466 720922850 720922948 5.430000e-25 126.0
39 TraesCS1A01G379600 chr7A 85.714 56 4 4 2445 2498 736513194 736513247 7.220000e-04 56.5
40 TraesCS1A01G379600 chr2D 95.822 742 28 2 4 745 116284030 116283292 0.000000e+00 1195.0
41 TraesCS1A01G379600 chr2D 89.855 69 6 1 907 975 131475107 131475174 2.560000e-13 87.9
42 TraesCS1A01G379600 chr6A 95.430 744 30 3 3 745 545092660 545093400 0.000000e+00 1182.0
43 TraesCS1A01G379600 chr6A 95.541 740 30 2 6 745 128180476 128179740 0.000000e+00 1181.0
44 TraesCS1A01G379600 chr6A 95.424 743 31 2 3 745 486384369 486385108 0.000000e+00 1181.0
45 TraesCS1A01G379600 chr6A 85.255 373 31 11 4629 4980 581735657 581735288 3.800000e-96 363.0
46 TraesCS1A01G379600 chr5A 95.424 743 31 2 3 745 573547267 573546528 0.000000e+00 1181.0
47 TraesCS1A01G379600 chr5A 87.647 340 33 6 4629 4964 145747772 145748106 2.260000e-103 387.0
48 TraesCS1A01G379600 chr4A 95.174 746 33 2 3 748 325273257 325272515 0.000000e+00 1175.0
49 TraesCS1A01G379600 chr4A 86.711 301 39 1 3792 4091 708613693 708613993 2.980000e-87 333.0
50 TraesCS1A01G379600 chr4A 93.269 104 5 2 2094 2196 709199747 709199849 8.960000e-33 152.0
51 TraesCS1A01G379600 chr5D 94.018 769 38 7 4 770 307348722 307347960 0.000000e+00 1158.0
52 TraesCS1A01G379600 chr5D 88.824 340 34 4 4629 4964 129874495 129874834 1.030000e-111 414.0
53 TraesCS1A01G379600 chr5D 90.909 99 5 3 2383 2479 361646218 361646122 4.200000e-26 130.0
54 TraesCS1A01G379600 chr7D 75.520 1201 231 38 2541 3693 24947594 24946409 9.850000e-147 531.0
55 TraesCS1A01G379600 chr7D 87.104 442 55 2 1576 2016 25270328 25270768 2.780000e-137 499.0
56 TraesCS1A01G379600 chr7D 73.571 1207 243 45 2541 3697 25190693 25191873 4.850000e-105 392.0
57 TraesCS1A01G379600 chr7D 85.570 298 42 1 3798 4094 24946336 24946039 1.400000e-80 311.0
58 TraesCS1A01G379600 chr7D 80.128 156 28 2 906 1059 6589330 6589176 4.230000e-21 113.0
59 TraesCS1A01G379600 chr7D 94.444 54 2 1 929 981 215055041 215054988 1.190000e-11 82.4
60 TraesCS1A01G379600 chrUn 87.215 438 56 0 1579 2016 332753528 332753091 2.780000e-137 499.0
61 TraesCS1A01G379600 chrUn 75.269 465 83 21 3256 3693 468581920 468582379 5.280000e-45 193.0
62 TraesCS1A01G379600 chrUn 92.308 104 6 2 2094 2196 332753094 332752992 4.170000e-31 147.0
63 TraesCS1A01G379600 chrUn 85.526 76 9 2 907 981 303981525 303981451 1.540000e-10 78.7
64 TraesCS1A01G379600 chrUn 85.526 76 9 2 907 981 356554206 356554280 1.540000e-10 78.7
65 TraesCS1A01G379600 chr6D 86.067 445 61 1 1573 2016 55882268 55882712 1.300000e-130 477.0
66 TraesCS1A01G379600 chr6D 74.920 941 196 20 2538 3445 55893833 55894766 1.350000e-105 394.0
67 TraesCS1A01G379600 chr6D 84.896 192 23 4 3499 3688 55894853 55895040 6.830000e-44 189.0
68 TraesCS1A01G379600 chr6B 86.067 445 61 1 1573 2016 125725313 125725757 1.300000e-130 477.0
69 TraesCS1A01G379600 chr6B 87.324 284 36 0 3808 4091 125728992 125729275 4.990000e-85 326.0
70 TraesCS1A01G379600 chr6B 85.621 306 31 9 4670 4974 657091711 657091418 5.020000e-80 309.0
71 TraesCS1A01G379600 chr6B 77.348 543 90 23 3174 3688 125728311 125728848 1.820000e-74 291.0
72 TraesCS1A01G379600 chr6B 92.632 95 5 1 2381 2473 531739565 531739471 9.020000e-28 135.0
73 TraesCS1A01G379600 chr6B 89.189 74 6 2 903 975 222427342 222427414 1.980000e-14 91.6
74 TraesCS1A01G379600 chr5B 88.529 340 35 4 4629 4964 141952305 141952644 4.810000e-110 409.0
75 TraesCS1A01G379600 chr3D 91.837 98 4 3 2370 2465 129677994 129678089 3.240000e-27 134.0
76 TraesCS1A01G379600 chr3A 91.089 101 5 3 2368 2465 477416664 477416565 3.240000e-27 134.0
77 TraesCS1A01G379600 chr2A 91.000 100 4 3 2380 2474 509051730 509051631 4.200000e-26 130.0
78 TraesCS1A01G379600 chr4B 90.000 100 7 2 2368 2465 659154409 659154311 5.430000e-25 126.0
79 TraesCS1A01G379600 chr2B 88.000 75 8 1 907 981 784769786 784769713 2.560000e-13 87.9
80 TraesCS1A01G379600 chr2B 90.323 62 3 2 922 981 80554455 80554515 1.540000e-10 78.7
81 TraesCS1A01G379600 chr7B 90.164 61 5 1 922 981 185013616 185013556 1.540000e-10 78.7
82 TraesCS1A01G379600 chr3B 89.362 47 5 0 1013 1059 20564498 20564452 5.580000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G379600 chr1A 551538888 551544051 5163 False 9537.000000 9537 100.000000 1 5164 1 chr1A.!!$F1 5163
1 TraesCS1A01G379600 chr1B 631829214 631834629 5415 False 1598.666667 2374 92.450333 1109 4635 3 chr1B.!!$F2 3526
2 TraesCS1A01G379600 chr1B 631816636 631821722 5086 True 697.342857 1435 93.050286 1209 4974 7 chr1B.!!$R2 3765
3 TraesCS1A01G379600 chr1D 228195296 228196037 741 True 1190.000000 1190 95.570000 4 748 1 chr1D.!!$R1 744
4 TraesCS1A01G379600 chr1D 459830970 459840401 9431 False 511.472727 1605 92.748818 1109 5142 11 chr1D.!!$F1 4033
5 TraesCS1A01G379600 chr7A 606250185 606250924 739 False 1219.000000 1219 96.366000 3 745 1 chr7A.!!$F3 742
6 TraesCS1A01G379600 chr7A 25751000 25754831 3831 True 450.333333 569 82.611333 1579 4094 3 chr7A.!!$R1 2515
7 TraesCS1A01G379600 chr7A 26030126 26032689 2563 False 314.000000 470 84.255000 1586 3693 2 chr7A.!!$F6 2107
8 TraesCS1A01G379600 chr7A 37721385 37721942 557 False 244.500000 315 84.236500 3499 4091 2 chr7A.!!$F7 592
9 TraesCS1A01G379600 chr2D 116283292 116284030 738 True 1195.000000 1195 95.822000 4 745 1 chr2D.!!$R1 741
10 TraesCS1A01G379600 chr6A 545092660 545093400 740 False 1182.000000 1182 95.430000 3 745 1 chr6A.!!$F2 742
11 TraesCS1A01G379600 chr6A 128179740 128180476 736 True 1181.000000 1181 95.541000 6 745 1 chr6A.!!$R1 739
12 TraesCS1A01G379600 chr6A 486384369 486385108 739 False 1181.000000 1181 95.424000 3 745 1 chr6A.!!$F1 742
13 TraesCS1A01G379600 chr5A 573546528 573547267 739 True 1181.000000 1181 95.424000 3 745 1 chr5A.!!$R1 742
14 TraesCS1A01G379600 chr4A 325272515 325273257 742 True 1175.000000 1175 95.174000 3 748 1 chr4A.!!$R1 745
15 TraesCS1A01G379600 chr5D 307347960 307348722 762 True 1158.000000 1158 94.018000 4 770 1 chr5D.!!$R1 766
16 TraesCS1A01G379600 chr7D 24946039 24947594 1555 True 421.000000 531 80.545000 2541 4094 2 chr7D.!!$R3 1553
17 TraesCS1A01G379600 chr7D 25190693 25191873 1180 False 392.000000 392 73.571000 2541 3697 1 chr7D.!!$F1 1156
18 TraesCS1A01G379600 chrUn 332752992 332753528 536 True 323.000000 499 89.761500 1579 2196 2 chrUn.!!$R2 617
19 TraesCS1A01G379600 chr6D 55893833 55895040 1207 False 291.500000 394 79.908000 2538 3688 2 chr6D.!!$F2 1150
20 TraesCS1A01G379600 chr6B 125725313 125729275 3962 False 364.666667 477 83.579667 1573 4091 3 chr6B.!!$F2 2518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
827 829 0.179001 AGCCCGCAAAACTAAGTGGT 60.179 50.0 0.00 0.0 33.59 4.16 F
877 879 0.247736 CTCGAGACCTTTGACCCTGG 59.752 60.0 6.58 0.0 0.00 4.45 F
2025 2070 0.391263 CCAGCCAGGTTCGTACTTCC 60.391 60.0 0.00 0.0 0.00 3.46 F
2876 9233 0.250684 ATGTTGTCACGCCCATCACA 60.251 50.0 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2380 6503 1.201424 ATTGGAACGGAGGGAGTACC 58.799 55.000 0.0 0.0 40.67 3.34 R
2861 9218 0.901827 AGTATGTGATGGGCGTGACA 59.098 50.000 0.0 0.0 0.00 3.58 R
3040 9413 0.752054 TCAGGCAAGCAAAACCAAGG 59.248 50.000 0.0 0.0 0.00 3.61 R
4835 12475 1.888512 TGACCGTGGGAACTACAGTAC 59.111 52.381 0.0 0.0 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 7.578852 TCAATGATGCTCGCATAAAAGATAAG 58.421 34.615 4.10 0.00 36.70 1.73
192 193 4.270808 GGATTTTGTGAGCAAACAACTTGG 59.729 41.667 3.91 0.00 43.47 3.61
233 234 4.458989 TGCATAGGAAGGTAAAACAAGCAG 59.541 41.667 0.00 0.00 0.00 4.24
391 392 8.442632 TTCTTTTCATGATCTACAAGCATAGG 57.557 34.615 0.00 0.00 30.50 2.57
454 455 5.700402 ATAGTAGTGGGAGCAAACTCAAT 57.300 39.130 0.00 0.00 45.42 2.57
511 512 7.888021 ACCAAGATGACAAGTTTCATGGTTATA 59.112 33.333 7.67 0.00 34.19 0.98
603 604 0.604578 TTGCTCATCAAAGCTTGGGC 59.395 50.000 0.00 0.00 42.94 5.36
745 747 7.975058 TCATTCAAATATGTAGTGCCAAACATG 59.025 33.333 4.61 0.00 36.96 3.21
748 750 5.505173 AATATGTAGTGCCAAACATGCTC 57.495 39.130 4.61 0.00 36.96 4.26
749 751 2.268762 TGTAGTGCCAAACATGCTCA 57.731 45.000 0.00 0.00 0.00 4.26
750 752 1.879380 TGTAGTGCCAAACATGCTCAC 59.121 47.619 0.00 0.00 0.00 3.51
752 754 0.956633 AGTGCCAAACATGCTCACTG 59.043 50.000 0.00 0.00 36.72 3.66
753 755 0.670162 GTGCCAAACATGCTCACTGT 59.330 50.000 0.00 0.00 0.00 3.55
754 756 0.953727 TGCCAAACATGCTCACTGTC 59.046 50.000 0.00 0.00 0.00 3.51
756 758 1.610522 GCCAAACATGCTCACTGTCTT 59.389 47.619 0.00 0.00 0.00 3.01
757 759 2.606308 GCCAAACATGCTCACTGTCTTG 60.606 50.000 0.00 0.00 0.00 3.02
758 760 2.880268 CCAAACATGCTCACTGTCTTGA 59.120 45.455 0.00 0.00 0.00 3.02
759 761 3.504906 CCAAACATGCTCACTGTCTTGAT 59.495 43.478 0.00 0.00 0.00 2.57
760 762 4.379186 CCAAACATGCTCACTGTCTTGATC 60.379 45.833 0.00 0.00 0.00 2.92
761 763 3.977134 ACATGCTCACTGTCTTGATCT 57.023 42.857 0.00 0.00 0.00 2.75
762 764 4.283363 ACATGCTCACTGTCTTGATCTT 57.717 40.909 0.00 0.00 0.00 2.40
763 765 4.252073 ACATGCTCACTGTCTTGATCTTC 58.748 43.478 0.00 0.00 0.00 2.87
764 766 4.251268 CATGCTCACTGTCTTGATCTTCA 58.749 43.478 0.00 0.00 0.00 3.02
765 767 3.922910 TGCTCACTGTCTTGATCTTCAG 58.077 45.455 0.00 0.36 0.00 3.02
766 768 3.323115 TGCTCACTGTCTTGATCTTCAGT 59.677 43.478 0.00 0.97 41.02 3.41
767 769 4.524328 TGCTCACTGTCTTGATCTTCAGTA 59.476 41.667 10.45 0.00 38.79 2.74
768 770 5.011023 TGCTCACTGTCTTGATCTTCAGTAA 59.989 40.000 10.45 0.20 38.79 2.24
769 771 6.105333 GCTCACTGTCTTGATCTTCAGTAAT 58.895 40.000 10.45 0.00 38.79 1.89
770 772 6.035866 GCTCACTGTCTTGATCTTCAGTAATG 59.964 42.308 10.45 0.00 38.79 1.90
771 773 6.997655 TCACTGTCTTGATCTTCAGTAATGT 58.002 36.000 10.45 0.00 38.79 2.71
772 774 7.093354 TCACTGTCTTGATCTTCAGTAATGTC 58.907 38.462 10.45 0.00 38.79 3.06
773 775 6.870439 CACTGTCTTGATCTTCAGTAATGTCA 59.130 38.462 10.45 0.00 38.79 3.58
774 776 7.063191 CACTGTCTTGATCTTCAGTAATGTCAG 59.937 40.741 10.45 0.00 38.79 3.51
775 777 6.997655 TGTCTTGATCTTCAGTAATGTCAGT 58.002 36.000 0.00 0.00 0.00 3.41
776 778 7.445121 TGTCTTGATCTTCAGTAATGTCAGTT 58.555 34.615 0.00 0.00 0.00 3.16
777 779 7.386025 TGTCTTGATCTTCAGTAATGTCAGTTG 59.614 37.037 0.00 0.00 0.00 3.16
778 780 7.600375 GTCTTGATCTTCAGTAATGTCAGTTGA 59.400 37.037 0.00 0.00 0.00 3.18
779 781 7.816513 TCTTGATCTTCAGTAATGTCAGTTGAG 59.183 37.037 0.00 0.00 0.00 3.02
780 782 7.232118 TGATCTTCAGTAATGTCAGTTGAGA 57.768 36.000 0.00 0.00 0.00 3.27
781 783 7.093354 TGATCTTCAGTAATGTCAGTTGAGAC 58.907 38.462 0.00 0.00 38.99 3.36
788 790 2.602257 TGTCAGTTGAGACAGGTGTG 57.398 50.000 0.00 0.00 43.18 3.82
789 791 1.221414 GTCAGTTGAGACAGGTGTGC 58.779 55.000 0.00 0.00 38.40 4.57
790 792 1.123077 TCAGTTGAGACAGGTGTGCT 58.877 50.000 0.00 0.00 0.00 4.40
791 793 2.035961 GTCAGTTGAGACAGGTGTGCTA 59.964 50.000 0.00 0.00 38.40 3.49
792 794 2.698274 TCAGTTGAGACAGGTGTGCTAA 59.302 45.455 0.00 0.00 0.00 3.09
793 795 3.133901 TCAGTTGAGACAGGTGTGCTAAA 59.866 43.478 0.00 0.00 0.00 1.85
794 796 3.876914 CAGTTGAGACAGGTGTGCTAAAA 59.123 43.478 0.00 0.00 0.00 1.52
795 797 4.335315 CAGTTGAGACAGGTGTGCTAAAAA 59.665 41.667 0.00 0.00 0.00 1.94
813 815 1.746470 AAAAATCGTTAGGGAGCCCG 58.254 50.000 0.00 0.00 41.95 6.13
814 816 0.746923 AAAATCGTTAGGGAGCCCGC 60.747 55.000 0.00 0.00 41.95 6.13
815 817 1.906105 AAATCGTTAGGGAGCCCGCA 61.906 55.000 0.00 0.00 41.95 5.69
816 818 1.906105 AATCGTTAGGGAGCCCGCAA 61.906 55.000 0.00 0.00 41.95 4.85
817 819 1.906105 ATCGTTAGGGAGCCCGCAAA 61.906 55.000 0.00 0.00 41.95 3.68
818 820 1.673009 CGTTAGGGAGCCCGCAAAA 60.673 57.895 0.00 0.00 41.95 2.44
819 821 1.880894 GTTAGGGAGCCCGCAAAAC 59.119 57.895 0.00 0.81 41.95 2.43
820 822 0.608308 GTTAGGGAGCCCGCAAAACT 60.608 55.000 0.00 0.00 41.95 2.66
821 823 0.985760 TTAGGGAGCCCGCAAAACTA 59.014 50.000 0.00 0.00 41.95 2.24
822 824 0.985760 TAGGGAGCCCGCAAAACTAA 59.014 50.000 0.00 0.00 41.95 2.24
823 825 0.322546 AGGGAGCCCGCAAAACTAAG 60.323 55.000 0.00 0.00 41.95 2.18
824 826 0.608308 GGGAGCCCGCAAAACTAAGT 60.608 55.000 0.00 0.00 0.00 2.24
825 827 0.521735 GGAGCCCGCAAAACTAAGTG 59.478 55.000 0.00 0.00 0.00 3.16
826 828 0.521735 GAGCCCGCAAAACTAAGTGG 59.478 55.000 0.00 0.00 35.20 4.00
827 829 0.179001 AGCCCGCAAAACTAAGTGGT 60.179 50.000 0.00 0.00 33.59 4.16
828 830 0.671796 GCCCGCAAAACTAAGTGGTT 59.328 50.000 0.00 0.00 33.59 3.67
829 831 1.601914 GCCCGCAAAACTAAGTGGTTG 60.602 52.381 0.00 0.00 33.59 3.77
830 832 1.601914 CCCGCAAAACTAAGTGGTTGC 60.602 52.381 7.04 7.04 42.29 4.17
831 833 1.066303 CCGCAAAACTAAGTGGTTGCA 59.934 47.619 14.62 0.00 45.23 4.08
832 834 2.116366 CGCAAAACTAAGTGGTTGCAC 58.884 47.619 14.62 0.00 45.23 4.57
833 835 2.478709 CGCAAAACTAAGTGGTTGCACA 60.479 45.455 14.62 0.00 45.23 4.57
834 836 2.857748 GCAAAACTAAGTGGTTGCACAC 59.142 45.455 10.95 0.00 44.53 3.82
835 837 3.674682 GCAAAACTAAGTGGTTGCACACA 60.675 43.478 9.82 0.00 44.53 3.72
836 838 3.775661 AAACTAAGTGGTTGCACACAC 57.224 42.857 11.07 11.07 43.72 3.82
837 839 1.295792 ACTAAGTGGTTGCACACACG 58.704 50.000 9.82 2.04 43.72 4.49
838 840 1.295792 CTAAGTGGTTGCACACACGT 58.704 50.000 9.82 10.92 43.72 4.49
839 841 1.003972 CTAAGTGGTTGCACACACGTG 60.004 52.381 15.48 15.48 46.56 4.49
840 842 1.653094 AAGTGGTTGCACACACGTGG 61.653 55.000 21.57 11.39 43.81 4.94
841 843 2.826287 TGGTTGCACACACGTGGG 60.826 61.111 18.21 18.21 43.81 4.61
842 844 2.826738 GGTTGCACACACGTGGGT 60.827 61.111 19.98 19.98 43.81 4.51
858 860 3.042560 GTGGCCACCTTTCACTGC 58.957 61.111 26.31 0.00 0.00 4.40
859 861 1.529244 GTGGCCACCTTTCACTGCT 60.529 57.895 26.31 0.00 0.00 4.24
860 862 1.228245 TGGCCACCTTTCACTGCTC 60.228 57.895 0.00 0.00 0.00 4.26
861 863 2.328099 GGCCACCTTTCACTGCTCG 61.328 63.158 0.00 0.00 0.00 5.03
862 864 1.301716 GCCACCTTTCACTGCTCGA 60.302 57.895 0.00 0.00 0.00 4.04
863 865 1.294659 GCCACCTTTCACTGCTCGAG 61.295 60.000 8.45 8.45 0.00 4.04
864 866 0.318441 CCACCTTTCACTGCTCGAGA 59.682 55.000 18.75 0.02 0.00 4.04
865 867 1.423395 CACCTTTCACTGCTCGAGAC 58.577 55.000 18.75 8.32 0.00 3.36
866 868 0.318762 ACCTTTCACTGCTCGAGACC 59.681 55.000 18.75 0.00 0.00 3.85
867 869 0.605589 CCTTTCACTGCTCGAGACCT 59.394 55.000 18.75 0.00 0.00 3.85
868 870 1.001406 CCTTTCACTGCTCGAGACCTT 59.999 52.381 18.75 0.00 0.00 3.50
869 871 2.548920 CCTTTCACTGCTCGAGACCTTT 60.549 50.000 18.75 0.00 0.00 3.11
870 872 2.154854 TTCACTGCTCGAGACCTTTG 57.845 50.000 18.75 5.15 0.00 2.77
871 873 1.328279 TCACTGCTCGAGACCTTTGA 58.672 50.000 18.75 7.54 0.00 2.69
872 874 1.000163 TCACTGCTCGAGACCTTTGAC 60.000 52.381 18.75 0.00 0.00 3.18
873 875 0.318762 ACTGCTCGAGACCTTTGACC 59.681 55.000 18.75 0.00 0.00 4.02
874 876 0.390472 CTGCTCGAGACCTTTGACCC 60.390 60.000 18.75 0.00 0.00 4.46
875 877 0.832135 TGCTCGAGACCTTTGACCCT 60.832 55.000 18.75 0.00 0.00 4.34
876 878 0.390472 GCTCGAGACCTTTGACCCTG 60.390 60.000 18.75 0.00 0.00 4.45
877 879 0.247736 CTCGAGACCTTTGACCCTGG 59.752 60.000 6.58 0.00 0.00 4.45
878 880 0.471211 TCGAGACCTTTGACCCTGGT 60.471 55.000 0.00 0.00 36.70 4.00
879 881 0.396811 CGAGACCTTTGACCCTGGTT 59.603 55.000 0.00 0.00 33.74 3.67
880 882 1.202770 CGAGACCTTTGACCCTGGTTT 60.203 52.381 0.00 0.00 33.74 3.27
881 883 2.748465 CGAGACCTTTGACCCTGGTTTT 60.748 50.000 0.00 0.00 33.74 2.43
882 884 2.623416 GAGACCTTTGACCCTGGTTTTG 59.377 50.000 0.00 0.00 33.74 2.44
883 885 2.024369 AGACCTTTGACCCTGGTTTTGT 60.024 45.455 0.00 0.00 33.74 2.83
884 886 2.100749 GACCTTTGACCCTGGTTTTGTG 59.899 50.000 0.00 0.00 33.74 3.33
885 887 1.412343 CCTTTGACCCTGGTTTTGTGG 59.588 52.381 0.00 0.00 0.00 4.17
886 888 1.412343 CTTTGACCCTGGTTTTGTGGG 59.588 52.381 0.00 0.00 46.07 4.61
887 889 1.045911 TTGACCCTGGTTTTGTGGGC 61.046 55.000 0.00 0.00 44.56 5.36
888 890 2.123033 ACCCTGGTTTTGTGGGCC 60.123 61.111 0.00 0.00 44.56 5.80
889 891 2.201210 CCCTGGTTTTGTGGGCCT 59.799 61.111 4.53 0.00 33.88 5.19
890 892 1.459348 CCCTGGTTTTGTGGGCCTT 60.459 57.895 4.53 0.00 33.88 4.35
891 893 1.471829 CCCTGGTTTTGTGGGCCTTC 61.472 60.000 4.53 0.00 33.88 3.46
892 894 0.758685 CCTGGTTTTGTGGGCCTTCA 60.759 55.000 4.53 0.87 0.00 3.02
893 895 1.118838 CTGGTTTTGTGGGCCTTCAA 58.881 50.000 4.53 7.87 0.00 2.69
894 896 1.484240 CTGGTTTTGTGGGCCTTCAAA 59.516 47.619 18.25 18.25 32.75 2.69
895 897 1.208293 TGGTTTTGTGGGCCTTCAAAC 59.792 47.619 20.61 17.04 34.05 2.93
896 898 1.208293 GGTTTTGTGGGCCTTCAAACA 59.792 47.619 20.61 8.03 34.05 2.83
897 899 2.158827 GGTTTTGTGGGCCTTCAAACAT 60.159 45.455 20.61 0.00 34.05 2.71
898 900 3.070302 GGTTTTGTGGGCCTTCAAACATA 59.930 43.478 20.61 9.15 34.05 2.29
899 901 4.443598 GGTTTTGTGGGCCTTCAAACATAA 60.444 41.667 20.61 9.08 34.05 1.90
900 902 5.304778 GTTTTGTGGGCCTTCAAACATAAT 58.695 37.500 20.61 0.00 34.05 1.28
901 903 4.533919 TTGTGGGCCTTCAAACATAATG 57.466 40.909 4.53 0.00 0.00 1.90
902 904 3.505386 TGTGGGCCTTCAAACATAATGT 58.495 40.909 4.53 0.00 0.00 2.71
903 905 3.509575 TGTGGGCCTTCAAACATAATGTC 59.490 43.478 4.53 0.00 0.00 3.06
904 906 3.096092 TGGGCCTTCAAACATAATGTCC 58.904 45.455 4.53 0.00 0.00 4.02
905 907 2.099098 GGGCCTTCAAACATAATGTCCG 59.901 50.000 0.84 0.00 0.00 4.79
906 908 2.479560 GGCCTTCAAACATAATGTCCGC 60.480 50.000 0.00 0.00 0.00 5.54
907 909 2.423538 GCCTTCAAACATAATGTCCGCT 59.576 45.455 0.00 0.00 0.00 5.52
908 910 3.119495 GCCTTCAAACATAATGTCCGCTT 60.119 43.478 0.00 0.00 0.00 4.68
909 911 4.095782 GCCTTCAAACATAATGTCCGCTTA 59.904 41.667 0.00 0.00 0.00 3.09
910 912 5.730568 GCCTTCAAACATAATGTCCGCTTAG 60.731 44.000 0.00 0.00 0.00 2.18
911 913 5.584649 CCTTCAAACATAATGTCCGCTTAGA 59.415 40.000 0.00 0.00 0.00 2.10
912 914 6.238211 CCTTCAAACATAATGTCCGCTTAGAG 60.238 42.308 0.00 0.00 0.00 2.43
913 915 4.570772 TCAAACATAATGTCCGCTTAGAGC 59.429 41.667 0.00 0.00 38.02 4.09
914 916 3.819564 ACATAATGTCCGCTTAGAGCA 57.180 42.857 0.50 0.00 42.58 4.26
915 917 4.342862 ACATAATGTCCGCTTAGAGCAT 57.657 40.909 0.50 0.00 42.58 3.79
916 918 4.310769 ACATAATGTCCGCTTAGAGCATC 58.689 43.478 0.50 0.00 42.58 3.91
955 957 9.995003 ATGCAAATTTAAAGATGTAAAACAGGA 57.005 25.926 0.00 0.00 0.00 3.86
956 958 9.474920 TGCAAATTTAAAGATGTAAAACAGGAG 57.525 29.630 0.00 0.00 0.00 3.69
957 959 8.925700 GCAAATTTAAAGATGTAAAACAGGAGG 58.074 33.333 0.00 0.00 0.00 4.30
958 960 9.981114 CAAATTTAAAGATGTAAAACAGGAGGT 57.019 29.630 0.00 0.00 0.00 3.85
959 961 9.981114 AAATTTAAAGATGTAAAACAGGAGGTG 57.019 29.630 0.00 0.00 0.00 4.00
960 962 8.706322 ATTTAAAGATGTAAAACAGGAGGTGT 57.294 30.769 0.00 0.00 43.24 4.16
961 963 9.802039 ATTTAAAGATGTAAAACAGGAGGTGTA 57.198 29.630 0.00 0.00 39.03 2.90
962 964 9.629878 TTTAAAGATGTAAAACAGGAGGTGTAA 57.370 29.630 0.00 0.00 39.03 2.41
963 965 9.629878 TTAAAGATGTAAAACAGGAGGTGTAAA 57.370 29.630 0.00 0.00 39.03 2.01
964 966 8.528044 AAAGATGTAAAACAGGAGGTGTAAAA 57.472 30.769 0.00 0.00 39.03 1.52
965 967 8.528044 AAGATGTAAAACAGGAGGTGTAAAAA 57.472 30.769 0.00 0.00 39.03 1.94
966 968 8.706322 AGATGTAAAACAGGAGGTGTAAAAAT 57.294 30.769 0.00 0.00 39.03 1.82
967 969 9.143155 AGATGTAAAACAGGAGGTGTAAAAATT 57.857 29.630 0.00 0.00 39.03 1.82
968 970 9.758651 GATGTAAAACAGGAGGTGTAAAAATTT 57.241 29.630 0.00 0.00 39.03 1.82
1031 1033 7.523293 TTGAAGATGTAAAAGAGCAAATCCA 57.477 32.000 0.00 0.00 0.00 3.41
1032 1034 7.523293 TGAAGATGTAAAAGAGCAAATCCAA 57.477 32.000 0.00 0.00 0.00 3.53
1033 1035 8.125978 TGAAGATGTAAAAGAGCAAATCCAAT 57.874 30.769 0.00 0.00 0.00 3.16
1034 1036 9.241919 TGAAGATGTAAAAGAGCAAATCCAATA 57.758 29.630 0.00 0.00 0.00 1.90
1067 1069 9.450807 GTATATTTGTGATGTAAATGGAGTTGC 57.549 33.333 0.00 0.00 0.00 4.17
1068 1070 6.594788 ATTTGTGATGTAAATGGAGTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
1069 1071 5.627499 TTGTGATGTAAATGGAGTTGCTC 57.373 39.130 0.00 0.00 0.00 4.26
1070 1072 4.910195 TGTGATGTAAATGGAGTTGCTCT 58.090 39.130 0.00 0.00 0.00 4.09
1071 1073 5.316167 TGTGATGTAAATGGAGTTGCTCTT 58.684 37.500 0.00 0.00 0.00 2.85
1072 1074 6.472016 TGTGATGTAAATGGAGTTGCTCTTA 58.528 36.000 0.00 0.00 0.00 2.10
1073 1075 6.595326 TGTGATGTAAATGGAGTTGCTCTTAG 59.405 38.462 0.00 0.00 0.00 2.18
1074 1076 6.818644 GTGATGTAAATGGAGTTGCTCTTAGA 59.181 38.462 0.00 0.00 0.00 2.10
1075 1077 6.818644 TGATGTAAATGGAGTTGCTCTTAGAC 59.181 38.462 0.00 0.00 0.00 2.59
1076 1078 6.109156 TGTAAATGGAGTTGCTCTTAGACA 57.891 37.500 0.00 0.00 0.00 3.41
1077 1079 6.530120 TGTAAATGGAGTTGCTCTTAGACAA 58.470 36.000 0.00 0.00 0.00 3.18
1078 1080 7.168219 TGTAAATGGAGTTGCTCTTAGACAAT 58.832 34.615 1.88 0.00 0.00 2.71
1079 1081 7.665559 TGTAAATGGAGTTGCTCTTAGACAATT 59.334 33.333 1.88 0.00 0.00 2.32
1080 1082 9.162764 GTAAATGGAGTTGCTCTTAGACAATTA 57.837 33.333 1.88 0.00 0.00 1.40
1081 1083 8.635765 AAATGGAGTTGCTCTTAGACAATTAA 57.364 30.769 1.88 0.00 0.00 1.40
1082 1084 7.617041 ATGGAGTTGCTCTTAGACAATTAAC 57.383 36.000 1.88 0.00 0.00 2.01
1083 1085 6.530120 TGGAGTTGCTCTTAGACAATTAACA 58.470 36.000 0.00 0.00 0.00 2.41
1084 1086 7.168219 TGGAGTTGCTCTTAGACAATTAACAT 58.832 34.615 0.00 0.00 0.00 2.71
1085 1087 7.334421 TGGAGTTGCTCTTAGACAATTAACATC 59.666 37.037 0.00 0.00 0.00 3.06
1086 1088 7.334421 GGAGTTGCTCTTAGACAATTAACATCA 59.666 37.037 0.00 0.00 0.00 3.07
1087 1089 8.034058 AGTTGCTCTTAGACAATTAACATCAC 57.966 34.615 0.00 0.00 0.00 3.06
1088 1090 6.985188 TGCTCTTAGACAATTAACATCACC 57.015 37.500 0.00 0.00 0.00 4.02
1089 1091 6.711277 TGCTCTTAGACAATTAACATCACCT 58.289 36.000 0.00 0.00 0.00 4.00
1090 1092 7.168219 TGCTCTTAGACAATTAACATCACCTT 58.832 34.615 0.00 0.00 0.00 3.50
1091 1093 7.665559 TGCTCTTAGACAATTAACATCACCTTT 59.334 33.333 0.00 0.00 0.00 3.11
1092 1094 7.965107 GCTCTTAGACAATTAACATCACCTTTG 59.035 37.037 0.00 0.00 0.00 2.77
1093 1095 8.918202 TCTTAGACAATTAACATCACCTTTGT 57.082 30.769 0.00 0.00 0.00 2.83
1094 1096 9.349713 TCTTAGACAATTAACATCACCTTTGTT 57.650 29.630 0.00 0.00 40.30 2.83
1095 1097 9.398170 CTTAGACAATTAACATCACCTTTGTTG 57.602 33.333 0.00 0.00 37.81 3.33
1096 1098 6.215845 AGACAATTAACATCACCTTTGTTGC 58.784 36.000 0.00 0.00 37.81 4.17
1097 1099 6.040842 AGACAATTAACATCACCTTTGTTGCT 59.959 34.615 0.00 0.00 37.81 3.91
1098 1100 6.215845 ACAATTAACATCACCTTTGTTGCTC 58.784 36.000 0.00 0.00 37.81 4.26
1099 1101 6.040842 ACAATTAACATCACCTTTGTTGCTCT 59.959 34.615 0.00 0.00 37.81 4.09
1100 1102 6.655078 ATTAACATCACCTTTGTTGCTCTT 57.345 33.333 0.00 0.00 37.81 2.85
1101 1103 7.759489 ATTAACATCACCTTTGTTGCTCTTA 57.241 32.000 0.00 0.00 37.81 2.10
1102 1104 7.575414 TTAACATCACCTTTGTTGCTCTTAA 57.425 32.000 0.00 0.00 37.81 1.85
1103 1105 6.463995 AACATCACCTTTGTTGCTCTTAAA 57.536 33.333 0.00 0.00 36.02 1.52
1104 1106 5.831997 ACATCACCTTTGTTGCTCTTAAAC 58.168 37.500 0.00 0.00 0.00 2.01
1105 1107 5.594317 ACATCACCTTTGTTGCTCTTAAACT 59.406 36.000 0.00 0.00 0.00 2.66
1106 1108 6.096846 ACATCACCTTTGTTGCTCTTAAACTT 59.903 34.615 0.00 0.00 0.00 2.66
1107 1109 6.524101 TCACCTTTGTTGCTCTTAAACTTT 57.476 33.333 0.00 0.00 0.00 2.66
1108 1110 6.930731 TCACCTTTGTTGCTCTTAAACTTTT 58.069 32.000 0.00 0.00 0.00 2.27
1109 1111 7.382898 TCACCTTTGTTGCTCTTAAACTTTTT 58.617 30.769 0.00 0.00 0.00 1.94
1110 1112 8.524487 TCACCTTTGTTGCTCTTAAACTTTTTA 58.476 29.630 0.00 0.00 0.00 1.52
1111 1113 8.592155 CACCTTTGTTGCTCTTAAACTTTTTAC 58.408 33.333 0.00 0.00 0.00 2.01
1112 1114 7.762615 ACCTTTGTTGCTCTTAAACTTTTTACC 59.237 33.333 0.00 0.00 0.00 2.85
1113 1115 7.979537 CCTTTGTTGCTCTTAAACTTTTTACCT 59.020 33.333 0.00 0.00 0.00 3.08
1114 1116 8.920509 TTTGTTGCTCTTAAACTTTTTACCTC 57.079 30.769 0.00 0.00 0.00 3.85
1165 1167 1.599542 GATCCTTGATAAGCGTGCCAC 59.400 52.381 0.00 0.00 0.00 5.01
1295 1312 3.103742 TCCCAGCCAAAAGAACAAAAGT 58.896 40.909 0.00 0.00 0.00 2.66
1314 1331 2.028567 AGTGACAAGCTTACAGAGAGCC 60.029 50.000 0.00 0.00 41.03 4.70
1318 1335 4.177783 GACAAGCTTACAGAGAGCCTAAC 58.822 47.826 0.00 0.00 41.03 2.34
1324 1341 5.480772 AGCTTACAGAGAGCCTAACTACAAA 59.519 40.000 0.00 0.00 41.03 2.83
1332 1349 4.536489 AGAGCCTAACTACAAATCCCAACT 59.464 41.667 0.00 0.00 0.00 3.16
1448 1471 1.112113 ATCACCGCTCCACTTCGTAT 58.888 50.000 0.00 0.00 0.00 3.06
1455 1478 3.261951 CCACTTCGTATGCCGGCG 61.262 66.667 23.90 7.44 37.11 6.46
1538 1568 1.234615 TGCTTAACTTCCCGTGCAGC 61.235 55.000 0.00 0.00 33.89 5.25
1539 1569 0.955919 GCTTAACTTCCCGTGCAGCT 60.956 55.000 0.00 0.00 31.71 4.24
1577 1622 1.309102 AGGAAGGGGAGGAATGGGG 60.309 63.158 0.00 0.00 0.00 4.96
1827 1872 4.796231 GAGCGCGCCTTCTTCCGA 62.796 66.667 30.33 0.00 0.00 4.55
2025 2070 0.391263 CCAGCCAGGTTCGTACTTCC 60.391 60.000 0.00 0.00 0.00 3.46
2027 2072 1.822990 CAGCCAGGTTCGTACTTCCTA 59.177 52.381 0.00 0.00 0.00 2.94
2028 2073 2.100989 AGCCAGGTTCGTACTTCCTAG 58.899 52.381 0.00 0.00 0.00 3.02
2029 2074 1.136500 GCCAGGTTCGTACTTCCTAGG 59.864 57.143 0.82 0.82 0.00 3.02
2030 2075 1.136500 CCAGGTTCGTACTTCCTAGGC 59.864 57.143 2.96 0.00 0.00 3.93
2031 2076 2.100989 CAGGTTCGTACTTCCTAGGCT 58.899 52.381 2.96 0.00 0.00 4.58
2033 2078 2.097825 GGTTCGTACTTCCTAGGCTCA 58.902 52.381 2.96 0.00 0.00 4.26
2067 2123 2.421424 GTGGAGTGGAGCATGAATGAAC 59.579 50.000 0.00 0.00 0.00 3.18
2081 2142 3.055819 TGAATGAACTGGTACTCTGCTCC 60.056 47.826 0.00 0.00 0.00 4.70
2147 2208 1.905512 GGTATCTTGTGGAGCCGGT 59.094 57.895 1.90 0.00 0.00 5.28
2222 3258 7.938563 ATCTCTGAATCTGCGATAAGTTAAC 57.061 36.000 0.00 0.00 0.00 2.01
2223 3259 6.863275 TCTCTGAATCTGCGATAAGTTAACA 58.137 36.000 8.61 0.00 0.00 2.41
2224 3260 6.975197 TCTCTGAATCTGCGATAAGTTAACAG 59.025 38.462 8.61 0.00 0.00 3.16
2246 6368 6.106673 CAGTACCCAGTAACAAATACTCCTG 58.893 44.000 0.00 0.00 43.12 3.86
2274 6397 5.545658 TCAAACAGAGTGTCACAGTTTTC 57.454 39.130 14.62 1.00 30.68 2.29
2284 6407 7.498900 AGAGTGTCACAGTTTTCAATGTTATCA 59.501 33.333 5.62 0.00 0.00 2.15
2285 6408 7.417612 AGTGTCACAGTTTTCAATGTTATCAC 58.582 34.615 5.62 0.00 0.00 3.06
2286 6409 7.283127 AGTGTCACAGTTTTCAATGTTATCACT 59.717 33.333 5.62 0.00 32.39 3.41
2287 6410 7.915397 GTGTCACAGTTTTCAATGTTATCACTT 59.085 33.333 0.00 0.00 0.00 3.16
2288 6411 9.114952 TGTCACAGTTTTCAATGTTATCACTTA 57.885 29.630 0.00 0.00 0.00 2.24
2333 6456 8.121305 TGTTGCATCCTTATTCAATAAAGTGT 57.879 30.769 0.00 0.00 0.00 3.55
2334 6457 8.243426 TGTTGCATCCTTATTCAATAAAGTGTC 58.757 33.333 0.00 0.00 0.00 3.67
2335 6458 7.015226 TGCATCCTTATTCAATAAAGTGTCG 57.985 36.000 0.00 0.00 0.00 4.35
2336 6459 6.821160 TGCATCCTTATTCAATAAAGTGTCGA 59.179 34.615 0.00 0.00 0.00 4.20
2337 6460 7.335673 TGCATCCTTATTCAATAAAGTGTCGAA 59.664 33.333 0.00 0.00 0.00 3.71
2391 8173 5.234466 TCTTATACGTAGGTACTCCCTCC 57.766 47.826 0.08 0.00 44.81 4.30
2394 8176 3.181526 CGTAGGTACTCCCTCCGTT 57.818 57.895 0.00 0.00 44.81 4.44
2395 8177 1.020437 CGTAGGTACTCCCTCCGTTC 58.980 60.000 0.00 0.00 44.81 3.95
2396 8178 1.397672 GTAGGTACTCCCTCCGTTCC 58.602 60.000 0.00 0.00 44.81 3.62
2416 8200 9.326413 CCGTTCCAATATAAGAGTGTTTAGATT 57.674 33.333 0.00 0.00 0.00 2.40
2469 8253 4.886496 AGTTTACAGAGGGAGTACCAAC 57.114 45.455 0.00 0.00 43.89 3.77
2470 8254 4.490706 AGTTTACAGAGGGAGTACCAACT 58.509 43.478 0.00 0.00 43.89 3.16
2861 9218 6.260936 CGGGCTTCTTCATCTACATTTATGTT 59.739 38.462 0.02 0.00 41.97 2.71
2874 9231 2.481289 TTATGTTGTCACGCCCATCA 57.519 45.000 0.00 0.00 0.00 3.07
2876 9233 0.250684 ATGTTGTCACGCCCATCACA 60.251 50.000 0.00 0.00 0.00 3.58
2888 9245 3.692101 CGCCCATCACATACTGGTTTAAA 59.308 43.478 0.00 0.00 0.00 1.52
2896 9269 5.010282 CACATACTGGTTTAAAGCTTCCCT 58.990 41.667 17.61 0.00 0.00 4.20
3040 9413 1.742761 TCTTTGCTGTCAGCTATGGC 58.257 50.000 24.76 0.00 42.97 4.40
3090 9463 4.453480 TTGTCCATGTTCTCCTTTTCCT 57.547 40.909 0.00 0.00 0.00 3.36
3100 9473 5.074515 TGTTCTCCTTTTCCTTGGAAGGTAT 59.925 40.000 5.33 0.00 46.54 2.73
3304 9703 0.523968 CATTTGCATCCTTGTCGCCG 60.524 55.000 0.00 0.00 0.00 6.46
3390 9790 0.677731 TACTGCTTGCATGTGCCCTC 60.678 55.000 2.07 0.00 41.18 4.30
3464 9865 8.156820 CCAGGTATATATGAACTCCAAACATGA 58.843 37.037 0.00 0.00 0.00 3.07
3474 9875 5.046910 ACTCCAAACATGAATTAACGCAG 57.953 39.130 0.00 0.00 0.00 5.18
3492 9893 5.354767 ACGCAGATGGATACTATATGCATG 58.645 41.667 10.16 0.00 33.88 4.06
3496 9897 7.046652 GCAGATGGATACTATATGCATGTCTT 58.953 38.462 10.16 0.00 34.24 3.01
3498 9899 9.526713 CAGATGGATACTATATGCATGTCTTAC 57.473 37.037 10.16 0.00 30.12 2.34
3499 9900 9.259832 AGATGGATACTATATGCATGTCTTACA 57.740 33.333 10.16 0.00 30.12 2.41
3500 9901 9.526713 GATGGATACTATATGCATGTCTTACAG 57.473 37.037 10.16 0.00 30.12 2.74
3502 9903 7.179160 TGGATACTATATGCATGTCTTACAGCT 59.821 37.037 10.16 0.00 37.61 4.24
3543 9996 3.261981 GGAGTACGACATCATGGGTTT 57.738 47.619 0.00 0.00 0.00 3.27
3698 10155 0.382515 GGCTCAGGTCAGCTACTACG 59.617 60.000 0.00 0.00 39.58 3.51
3715 10172 5.073311 ACTACGCTAGTCACATGAACAAT 57.927 39.130 0.00 0.00 32.47 2.71
3718 10175 4.507710 ACGCTAGTCACATGAACAATGAT 58.492 39.130 0.00 0.00 38.72 2.45
3720 10177 4.567959 CGCTAGTCACATGAACAATGATCA 59.432 41.667 0.00 0.00 38.72 2.92
3737 10195 9.334947 ACAATGATCATTACTTGTCCAAGATAG 57.665 33.333 20.32 5.34 40.79 2.08
3781 10240 6.283544 TGTATCAATTGTACGTGTCCCTAA 57.716 37.500 5.13 0.00 0.00 2.69
3855 10379 2.719531 TGTGTACCTTGGAACAGCAA 57.280 45.000 0.00 0.00 42.39 3.91
4096 10620 2.495155 GCATTCCCAGGCCAAAAATT 57.505 45.000 5.01 0.00 0.00 1.82
4099 10623 3.602483 CATTCCCAGGCCAAAAATTGAG 58.398 45.455 5.01 0.00 0.00 3.02
4100 10624 2.692709 TCCCAGGCCAAAAATTGAGA 57.307 45.000 5.01 0.00 0.00 3.27
4192 11137 4.946160 AGAAATCCCCCATGACAGTTTA 57.054 40.909 0.00 0.00 0.00 2.01
4220 11471 3.946606 GGTACCTGGCTTTTAGCAAGTA 58.053 45.455 4.06 0.00 40.73 2.24
4232 11483 7.090808 GCTTTTAGCAAGTAAGGCTTTAATGT 58.909 34.615 4.45 0.00 41.89 2.71
4255 11506 5.526846 GTCAAATCTTGTTTGGATGGCAAAA 59.473 36.000 0.00 0.00 0.00 2.44
4259 11510 5.549742 TCTTGTTTGGATGGCAAAATCTT 57.450 34.783 0.00 0.00 0.00 2.40
4323 11574 1.247567 TCACTTGCTAAAAGCCAGGC 58.752 50.000 1.84 1.84 41.51 4.85
4373 11624 6.880942 AAACATTGCCTTGCACAATTATTT 57.119 29.167 0.00 1.50 38.71 1.40
4381 11632 8.388484 TGCCTTGCACAATTATTTAAACAAAT 57.612 26.923 0.00 0.00 31.71 2.32
4513 11927 5.104941 TGAGGTACTATGTAGCAGTGCATTT 60.105 40.000 19.20 0.00 41.55 2.32
4581 12184 5.465051 CACTGATGATAGGAGGTAACGATG 58.535 45.833 0.00 0.00 46.39 3.84
4695 12333 3.071167 ACTGGGTAAACTGGAGAGTTCAC 59.929 47.826 0.00 0.00 41.87 3.18
4751 12391 4.338118 TGACTGCCAAAAGAAAGTGTAAGG 59.662 41.667 0.00 0.00 0.00 2.69
4765 12405 5.818678 AGTGTAAGGTATGAGTGACCAAA 57.181 39.130 0.00 0.00 39.65 3.28
4835 12475 4.038402 AGGGTGCAGAACTTCAGAAAATTG 59.962 41.667 0.00 0.00 0.00 2.32
4852 12553 3.604875 ATTGTACTGTAGTTCCCACGG 57.395 47.619 0.00 0.00 0.00 4.94
4863 12564 2.171027 AGTTCCCACGGTCACAAGTAAA 59.829 45.455 0.00 0.00 0.00 2.01
4888 12589 2.823924 TAACTGAAGCAACGGCACTA 57.176 45.000 0.00 0.00 44.61 2.74
4986 12733 3.877450 GCAGATGGGGATCCGGCA 61.877 66.667 5.45 0.00 35.24 5.69
4988 12735 2.040464 AGATGGGGATCCGGCAGT 60.040 61.111 5.45 0.00 35.24 4.40
4990 12737 0.178891 AGATGGGGATCCGGCAGTAT 60.179 55.000 5.45 0.00 35.24 2.12
5068 12856 1.531840 GCGGCCAGAGGAGGAGATA 60.532 63.158 2.24 0.00 0.00 1.98
5070 12858 1.638529 CGGCCAGAGGAGGAGATATT 58.361 55.000 2.24 0.00 0.00 1.28
5112 12912 3.393941 GAGGAGATGGGAGTCAATTCCAT 59.606 47.826 0.00 0.00 43.29 3.41
5120 12920 4.199310 GGGAGTCAATTCCATCGAAATCA 58.801 43.478 0.00 0.00 39.09 2.57
5128 12928 1.160329 CCATCGAAATCAGACCGGGC 61.160 60.000 6.32 0.52 0.00 6.13
5132 12932 0.447801 CGAAATCAGACCGGGCAAAG 59.552 55.000 11.69 0.00 0.00 2.77
5133 12933 0.171231 GAAATCAGACCGGGCAAAGC 59.829 55.000 11.69 0.00 0.00 3.51
5134 12934 0.251341 AAATCAGACCGGGCAAAGCT 60.251 50.000 11.69 0.00 0.00 3.74
5136 12936 2.543067 ATCAGACCGGGCAAAGCTCC 62.543 60.000 11.69 0.00 0.00 4.70
5137 12937 4.394712 AGACCGGGCAAAGCTCCG 62.395 66.667 11.69 4.64 40.29 4.63
5138 12938 4.699522 GACCGGGCAAAGCTCCGT 62.700 66.667 0.00 1.09 39.47 4.69
5140 12940 2.046700 CCGGGCAAAGCTCCGTAA 60.047 61.111 10.34 0.00 39.47 3.18
5141 12941 2.396157 CCGGGCAAAGCTCCGTAAC 61.396 63.158 10.34 0.00 39.47 2.50
5142 12942 2.736682 CGGGCAAAGCTCCGTAACG 61.737 63.158 3.49 0.00 37.51 3.18
5152 12952 4.609995 CCGTAACGGCACAATCCT 57.390 55.556 0.00 0.00 41.17 3.24
5153 12953 3.744941 CCGTAACGGCACAATCCTA 57.255 52.632 0.00 0.00 41.17 2.94
5154 12954 2.012937 CCGTAACGGCACAATCCTAA 57.987 50.000 0.00 0.00 41.17 2.69
5155 12955 2.557317 CCGTAACGGCACAATCCTAAT 58.443 47.619 0.00 0.00 41.17 1.73
5156 12956 2.940410 CCGTAACGGCACAATCCTAATT 59.060 45.455 0.00 0.00 41.17 1.40
5157 12957 3.375922 CCGTAACGGCACAATCCTAATTT 59.624 43.478 0.00 0.00 41.17 1.82
5158 12958 4.142556 CCGTAACGGCACAATCCTAATTTT 60.143 41.667 0.00 0.00 41.17 1.82
5159 12959 4.791163 CGTAACGGCACAATCCTAATTTTG 59.209 41.667 0.00 0.00 0.00 2.44
5160 12960 5.391097 CGTAACGGCACAATCCTAATTTTGA 60.391 40.000 0.00 0.00 0.00 2.69
5161 12961 5.659440 AACGGCACAATCCTAATTTTGAT 57.341 34.783 0.00 0.00 0.00 2.57
5162 12962 5.248870 ACGGCACAATCCTAATTTTGATC 57.751 39.130 0.00 0.00 0.00 2.92
5163 12963 4.704540 ACGGCACAATCCTAATTTTGATCA 59.295 37.500 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 9.798994 ATGATGCTCTCTTTATGTTTCAATTTC 57.201 29.630 0.00 0.00 0.00 2.17
192 193 2.627699 TGCAAGTTGATTCTTGTTCCCC 59.372 45.455 7.16 0.00 44.41 4.81
363 364 7.926674 TGCTTGTAGATCATGAAAAGAATGA 57.073 32.000 0.00 0.00 38.37 2.57
745 747 3.924144 ACTGAAGATCAAGACAGTGAGC 58.076 45.455 0.00 0.00 41.16 4.26
748 750 6.870439 TGACATTACTGAAGATCAAGACAGTG 59.130 38.462 17.69 0.00 42.37 3.66
749 751 6.997655 TGACATTACTGAAGATCAAGACAGT 58.002 36.000 14.71 14.71 44.17 3.55
750 752 7.095910 ACTGACATTACTGAAGATCAAGACAG 58.904 38.462 0.00 1.45 36.58 3.51
752 754 7.600375 TCAACTGACATTACTGAAGATCAAGAC 59.400 37.037 0.00 0.00 0.00 3.01
753 755 7.670364 TCAACTGACATTACTGAAGATCAAGA 58.330 34.615 0.00 0.00 0.00 3.02
754 756 7.816513 TCTCAACTGACATTACTGAAGATCAAG 59.183 37.037 0.00 0.00 0.00 3.02
756 758 7.093354 GTCTCAACTGACATTACTGAAGATCA 58.907 38.462 0.00 0.00 36.97 2.92
757 759 7.093354 TGTCTCAACTGACATTACTGAAGATC 58.907 38.462 0.00 0.00 41.43 2.75
758 760 6.997655 TGTCTCAACTGACATTACTGAAGAT 58.002 36.000 0.00 0.00 41.43 2.40
759 761 6.405278 TGTCTCAACTGACATTACTGAAGA 57.595 37.500 0.00 0.00 41.43 2.87
760 762 5.636965 CCTGTCTCAACTGACATTACTGAAG 59.363 44.000 0.00 0.00 44.66 3.02
761 763 5.070446 ACCTGTCTCAACTGACATTACTGAA 59.930 40.000 0.00 0.00 44.66 3.02
762 764 4.588951 ACCTGTCTCAACTGACATTACTGA 59.411 41.667 0.00 0.00 44.66 3.41
763 765 4.687948 CACCTGTCTCAACTGACATTACTG 59.312 45.833 0.00 0.00 44.66 2.74
764 766 4.345257 ACACCTGTCTCAACTGACATTACT 59.655 41.667 0.00 0.00 44.66 2.24
765 767 4.449068 CACACCTGTCTCAACTGACATTAC 59.551 45.833 0.00 0.00 44.66 1.89
766 768 4.631131 CACACCTGTCTCAACTGACATTA 58.369 43.478 0.00 0.00 44.66 1.90
767 769 3.470709 CACACCTGTCTCAACTGACATT 58.529 45.455 0.00 0.00 44.66 2.71
768 770 2.808202 GCACACCTGTCTCAACTGACAT 60.808 50.000 0.00 0.00 44.66 3.06
769 771 1.473257 GCACACCTGTCTCAACTGACA 60.473 52.381 0.00 0.00 43.72 3.58
770 772 1.202580 AGCACACCTGTCTCAACTGAC 60.203 52.381 0.00 0.00 37.47 3.51
771 773 1.123077 AGCACACCTGTCTCAACTGA 58.877 50.000 0.00 0.00 0.00 3.41
772 774 2.820059 TAGCACACCTGTCTCAACTG 57.180 50.000 0.00 0.00 0.00 3.16
773 775 3.838244 TTTAGCACACCTGTCTCAACT 57.162 42.857 0.00 0.00 0.00 3.16
774 776 4.893424 TTTTTAGCACACCTGTCTCAAC 57.107 40.909 0.00 0.00 0.00 3.18
794 796 1.746470 CGGGCTCCCTAACGATTTTT 58.254 50.000 3.11 0.00 0.00 1.94
795 797 0.746923 GCGGGCTCCCTAACGATTTT 60.747 55.000 3.11 0.00 0.00 1.82
796 798 1.153229 GCGGGCTCCCTAACGATTT 60.153 57.895 3.11 0.00 0.00 2.17
797 799 1.906105 TTGCGGGCTCCCTAACGATT 61.906 55.000 3.11 0.00 0.00 3.34
798 800 1.906105 TTTGCGGGCTCCCTAACGAT 61.906 55.000 3.11 0.00 0.00 3.73
799 801 2.114488 TTTTGCGGGCTCCCTAACGA 62.114 55.000 3.11 0.00 0.00 3.85
800 802 1.673009 TTTTGCGGGCTCCCTAACG 60.673 57.895 3.11 0.00 0.00 3.18
801 803 0.608308 AGTTTTGCGGGCTCCCTAAC 60.608 55.000 3.11 2.92 0.00 2.34
802 804 0.985760 TAGTTTTGCGGGCTCCCTAA 59.014 50.000 3.11 0.00 0.00 2.69
803 805 0.985760 TTAGTTTTGCGGGCTCCCTA 59.014 50.000 3.11 0.00 0.00 3.53
804 806 0.322546 CTTAGTTTTGCGGGCTCCCT 60.323 55.000 3.11 0.00 0.00 4.20
805 807 0.608308 ACTTAGTTTTGCGGGCTCCC 60.608 55.000 0.00 0.00 0.00 4.30
806 808 0.521735 CACTTAGTTTTGCGGGCTCC 59.478 55.000 0.00 0.00 0.00 4.70
807 809 0.521735 CCACTTAGTTTTGCGGGCTC 59.478 55.000 0.00 0.00 0.00 4.70
808 810 0.179001 ACCACTTAGTTTTGCGGGCT 60.179 50.000 0.00 0.00 0.00 5.19
809 811 0.671796 AACCACTTAGTTTTGCGGGC 59.328 50.000 0.00 0.00 0.00 6.13
810 812 1.601914 GCAACCACTTAGTTTTGCGGG 60.602 52.381 11.29 0.00 35.41 6.13
811 813 1.066303 TGCAACCACTTAGTTTTGCGG 59.934 47.619 18.13 4.51 45.98 5.69
812 814 2.116366 GTGCAACCACTTAGTTTTGCG 58.884 47.619 18.13 0.00 45.98 4.85
813 815 2.857748 GTGTGCAACCACTTAGTTTTGC 59.142 45.455 17.11 17.11 43.80 3.68
814 816 3.857093 GTGTGTGCAACCACTTAGTTTTG 59.143 43.478 8.70 0.40 42.54 2.44
815 817 3.426963 CGTGTGTGCAACCACTTAGTTTT 60.427 43.478 13.35 0.00 42.54 2.43
816 818 2.096819 CGTGTGTGCAACCACTTAGTTT 59.903 45.455 13.35 0.00 42.54 2.66
817 819 1.668751 CGTGTGTGCAACCACTTAGTT 59.331 47.619 13.35 0.00 42.54 2.24
818 820 1.295792 CGTGTGTGCAACCACTTAGT 58.704 50.000 13.35 0.00 42.54 2.24
819 821 1.003972 CACGTGTGTGCAACCACTTAG 60.004 52.381 7.58 5.90 42.54 2.18
820 822 1.010580 CACGTGTGTGCAACCACTTA 58.989 50.000 7.58 0.00 42.54 2.24
821 823 1.653094 CCACGTGTGTGCAACCACTT 61.653 55.000 15.65 3.43 45.04 3.16
822 824 2.112198 CCACGTGTGTGCAACCACT 61.112 57.895 15.65 1.04 45.04 4.00
823 825 2.407210 CCACGTGTGTGCAACCAC 59.593 61.111 15.65 6.88 45.04 4.16
824 826 2.826287 CCCACGTGTGTGCAACCA 60.826 61.111 15.65 0.00 45.04 3.67
825 827 2.826738 ACCCACGTGTGTGCAACC 60.827 61.111 15.65 0.00 45.04 3.77
826 828 2.407210 CACCCACGTGTGTGCAAC 59.593 61.111 18.08 0.00 45.04 4.17
827 829 2.826287 CCACCCACGTGTGTGCAA 60.826 61.111 23.61 0.00 45.04 4.08
830 832 4.866224 TGGCCACCCACGTGTGTG 62.866 66.667 22.32 22.32 46.00 3.82
841 843 1.518903 GAGCAGTGAAAGGTGGCCAC 61.519 60.000 28.57 28.57 0.00 5.01
842 844 1.228245 GAGCAGTGAAAGGTGGCCA 60.228 57.895 0.00 0.00 0.00 5.36
843 845 2.328099 CGAGCAGTGAAAGGTGGCC 61.328 63.158 0.00 0.00 0.00 5.36
844 846 1.294659 CTCGAGCAGTGAAAGGTGGC 61.295 60.000 0.00 0.00 0.00 5.01
845 847 0.318441 TCTCGAGCAGTGAAAGGTGG 59.682 55.000 7.81 0.00 0.00 4.61
846 848 1.423395 GTCTCGAGCAGTGAAAGGTG 58.577 55.000 7.81 0.00 0.00 4.00
847 849 0.318762 GGTCTCGAGCAGTGAAAGGT 59.681 55.000 7.81 0.00 0.00 3.50
848 850 0.605589 AGGTCTCGAGCAGTGAAAGG 59.394 55.000 7.81 0.00 0.00 3.11
849 851 2.447244 AAGGTCTCGAGCAGTGAAAG 57.553 50.000 7.81 0.00 0.00 2.62
850 852 2.102420 TCAAAGGTCTCGAGCAGTGAAA 59.898 45.455 7.81 0.00 0.00 2.69
851 853 1.686587 TCAAAGGTCTCGAGCAGTGAA 59.313 47.619 7.81 0.00 0.00 3.18
852 854 1.000163 GTCAAAGGTCTCGAGCAGTGA 60.000 52.381 7.81 3.92 0.00 3.41
853 855 1.423395 GTCAAAGGTCTCGAGCAGTG 58.577 55.000 7.81 1.46 0.00 3.66
854 856 0.318762 GGTCAAAGGTCTCGAGCAGT 59.681 55.000 7.81 0.00 0.00 4.40
855 857 0.390472 GGGTCAAAGGTCTCGAGCAG 60.390 60.000 7.81 0.00 0.00 4.24
856 858 0.832135 AGGGTCAAAGGTCTCGAGCA 60.832 55.000 7.81 0.00 0.00 4.26
857 859 0.390472 CAGGGTCAAAGGTCTCGAGC 60.390 60.000 7.81 2.69 0.00 5.03
858 860 0.247736 CCAGGGTCAAAGGTCTCGAG 59.752 60.000 5.93 5.93 0.00 4.04
859 861 0.471211 ACCAGGGTCAAAGGTCTCGA 60.471 55.000 0.00 0.00 0.00 4.04
860 862 0.396811 AACCAGGGTCAAAGGTCTCG 59.603 55.000 0.00 0.00 33.74 4.04
861 863 2.623416 CAAAACCAGGGTCAAAGGTCTC 59.377 50.000 0.00 0.00 33.74 3.36
862 864 2.024369 ACAAAACCAGGGTCAAAGGTCT 60.024 45.455 0.00 0.00 33.74 3.85
863 865 2.100749 CACAAAACCAGGGTCAAAGGTC 59.899 50.000 0.00 0.00 33.74 3.85
864 866 2.107366 CACAAAACCAGGGTCAAAGGT 58.893 47.619 0.00 0.00 37.20 3.50
865 867 1.412343 CCACAAAACCAGGGTCAAAGG 59.588 52.381 0.00 0.00 0.00 3.11
866 868 1.412343 CCCACAAAACCAGGGTCAAAG 59.588 52.381 0.00 0.00 37.81 2.77
867 869 1.490574 CCCACAAAACCAGGGTCAAA 58.509 50.000 0.00 0.00 37.81 2.69
868 870 1.045911 GCCCACAAAACCAGGGTCAA 61.046 55.000 0.00 0.00 44.69 3.18
869 871 1.456705 GCCCACAAAACCAGGGTCA 60.457 57.895 0.00 0.00 44.69 4.02
870 872 2.207229 GGCCCACAAAACCAGGGTC 61.207 63.158 0.00 0.00 44.69 4.46
871 873 2.123033 GGCCCACAAAACCAGGGT 60.123 61.111 0.00 0.00 44.69 4.34
872 874 1.459348 AAGGCCCACAAAACCAGGG 60.459 57.895 0.00 0.00 45.68 4.45
873 875 0.758685 TGAAGGCCCACAAAACCAGG 60.759 55.000 0.00 0.00 0.00 4.45
874 876 1.118838 TTGAAGGCCCACAAAACCAG 58.881 50.000 0.00 0.00 0.00 4.00
875 877 1.208293 GTTTGAAGGCCCACAAAACCA 59.792 47.619 21.16 2.91 37.66 3.67
876 878 1.208293 TGTTTGAAGGCCCACAAAACC 59.792 47.619 21.16 13.23 37.66 3.27
877 879 2.682155 TGTTTGAAGGCCCACAAAAC 57.318 45.000 21.16 16.48 37.66 2.43
878 880 5.163258 ACATTATGTTTGAAGGCCCACAAAA 60.163 36.000 21.16 14.07 37.66 2.44
879 881 4.346418 ACATTATGTTTGAAGGCCCACAAA 59.654 37.500 17.31 17.31 34.33 2.83
880 882 3.900601 ACATTATGTTTGAAGGCCCACAA 59.099 39.130 0.00 3.17 0.00 3.33
881 883 3.505386 ACATTATGTTTGAAGGCCCACA 58.495 40.909 0.00 0.00 0.00 4.17
882 884 3.119137 GGACATTATGTTTGAAGGCCCAC 60.119 47.826 0.00 0.00 0.00 4.61
883 885 3.096092 GGACATTATGTTTGAAGGCCCA 58.904 45.455 0.00 0.00 0.00 5.36
884 886 2.099098 CGGACATTATGTTTGAAGGCCC 59.901 50.000 0.00 0.00 0.00 5.80
885 887 2.479560 GCGGACATTATGTTTGAAGGCC 60.480 50.000 0.00 0.00 0.00 5.19
886 888 2.423538 AGCGGACATTATGTTTGAAGGC 59.576 45.455 0.00 0.00 0.00 4.35
887 889 4.701956 AAGCGGACATTATGTTTGAAGG 57.298 40.909 0.00 0.00 0.00 3.46
888 890 6.662414 TCTAAGCGGACATTATGTTTGAAG 57.338 37.500 0.00 0.00 0.00 3.02
889 891 5.064707 GCTCTAAGCGGACATTATGTTTGAA 59.935 40.000 0.00 0.00 0.00 2.69
890 892 4.570772 GCTCTAAGCGGACATTATGTTTGA 59.429 41.667 0.00 0.00 0.00 2.69
891 893 4.332543 TGCTCTAAGCGGACATTATGTTTG 59.667 41.667 0.00 0.00 46.26 2.93
892 894 4.513442 TGCTCTAAGCGGACATTATGTTT 58.487 39.130 0.00 0.00 46.26 2.83
893 895 4.137116 TGCTCTAAGCGGACATTATGTT 57.863 40.909 0.00 0.00 46.26 2.71
894 896 3.819564 TGCTCTAAGCGGACATTATGT 57.180 42.857 0.00 0.00 46.26 2.29
895 897 4.564041 AGATGCTCTAAGCGGACATTATG 58.436 43.478 0.00 0.00 46.26 1.90
896 898 4.881019 AGATGCTCTAAGCGGACATTAT 57.119 40.909 0.00 0.00 46.26 1.28
897 899 5.784578 TTAGATGCTCTAAGCGGACATTA 57.215 39.130 2.63 0.00 46.26 1.90
898 900 4.672587 TTAGATGCTCTAAGCGGACATT 57.327 40.909 2.63 0.00 46.26 2.71
899 901 4.881019 ATTAGATGCTCTAAGCGGACAT 57.119 40.909 10.17 0.00 46.26 3.06
900 902 5.784578 TTATTAGATGCTCTAAGCGGACA 57.215 39.130 10.17 0.00 46.26 4.02
901 903 8.758633 TTTATTATTAGATGCTCTAAGCGGAC 57.241 34.615 10.17 0.00 46.26 4.79
902 904 9.424319 CTTTTATTATTAGATGCTCTAAGCGGA 57.576 33.333 10.17 0.52 46.26 5.54
903 905 9.424319 TCTTTTATTATTAGATGCTCTAAGCGG 57.576 33.333 10.17 0.00 46.26 5.52
929 931 9.995003 TCCTGTTTTACATCTTTAAATTTGCAT 57.005 25.926 0.00 0.00 0.00 3.96
930 932 9.474920 CTCCTGTTTTACATCTTTAAATTTGCA 57.525 29.630 0.00 0.00 0.00 4.08
931 933 8.925700 CCTCCTGTTTTACATCTTTAAATTTGC 58.074 33.333 0.00 0.00 0.00 3.68
932 934 9.981114 ACCTCCTGTTTTACATCTTTAAATTTG 57.019 29.630 0.00 0.00 0.00 2.32
933 935 9.981114 CACCTCCTGTTTTACATCTTTAAATTT 57.019 29.630 0.00 0.00 0.00 1.82
934 936 9.143155 ACACCTCCTGTTTTACATCTTTAAATT 57.857 29.630 0.00 0.00 0.00 1.82
935 937 8.706322 ACACCTCCTGTTTTACATCTTTAAAT 57.294 30.769 0.00 0.00 0.00 1.40
936 938 9.629878 TTACACCTCCTGTTTTACATCTTTAAA 57.370 29.630 0.00 0.00 33.91 1.52
937 939 9.629878 TTTACACCTCCTGTTTTACATCTTTAA 57.370 29.630 0.00 0.00 33.91 1.52
938 940 9.629878 TTTTACACCTCCTGTTTTACATCTTTA 57.370 29.630 0.00 0.00 33.91 1.85
939 941 8.528044 TTTTACACCTCCTGTTTTACATCTTT 57.472 30.769 0.00 0.00 33.91 2.52
940 942 8.528044 TTTTTACACCTCCTGTTTTACATCTT 57.472 30.769 0.00 0.00 33.91 2.40
941 943 8.706322 ATTTTTACACCTCCTGTTTTACATCT 57.294 30.769 0.00 0.00 33.91 2.90
942 944 9.758651 AAATTTTTACACCTCCTGTTTTACATC 57.241 29.630 0.00 0.00 33.91 3.06
964 966 9.914131 GAGTTGCCTTCTTTTTAGATGTAAATT 57.086 29.630 0.00 0.00 0.00 1.82
965 967 8.523658 GGAGTTGCCTTCTTTTTAGATGTAAAT 58.476 33.333 0.00 0.00 0.00 1.40
966 968 7.504238 TGGAGTTGCCTTCTTTTTAGATGTAAA 59.496 33.333 0.00 0.00 37.63 2.01
967 969 7.001674 TGGAGTTGCCTTCTTTTTAGATGTAA 58.998 34.615 0.00 0.00 37.63 2.41
968 970 6.539173 TGGAGTTGCCTTCTTTTTAGATGTA 58.461 36.000 0.00 0.00 37.63 2.29
969 971 5.385198 TGGAGTTGCCTTCTTTTTAGATGT 58.615 37.500 0.00 0.00 37.63 3.06
970 972 5.964958 TGGAGTTGCCTTCTTTTTAGATG 57.035 39.130 0.00 0.00 37.63 2.90
971 973 5.833131 TGTTGGAGTTGCCTTCTTTTTAGAT 59.167 36.000 0.00 0.00 37.63 1.98
972 974 5.197451 TGTTGGAGTTGCCTTCTTTTTAGA 58.803 37.500 0.00 0.00 37.63 2.10
973 975 5.299279 TCTGTTGGAGTTGCCTTCTTTTTAG 59.701 40.000 0.00 0.00 37.63 1.85
974 976 5.197451 TCTGTTGGAGTTGCCTTCTTTTTA 58.803 37.500 0.00 0.00 37.63 1.52
975 977 4.023291 TCTGTTGGAGTTGCCTTCTTTTT 58.977 39.130 0.00 0.00 37.63 1.94
976 978 3.631250 TCTGTTGGAGTTGCCTTCTTTT 58.369 40.909 0.00 0.00 37.63 2.27
977 979 3.297134 TCTGTTGGAGTTGCCTTCTTT 57.703 42.857 0.00 0.00 37.63 2.52
978 980 3.515602 ATCTGTTGGAGTTGCCTTCTT 57.484 42.857 0.00 0.00 37.63 2.52
979 981 4.640771 TTATCTGTTGGAGTTGCCTTCT 57.359 40.909 0.00 0.00 37.63 2.85
980 982 8.854614 ATATATTATCTGTTGGAGTTGCCTTC 57.145 34.615 0.00 0.00 37.63 3.46
1005 1007 9.241919 TGGATTTGCTCTTTTACATCTTCAATA 57.758 29.630 0.00 0.00 0.00 1.90
1006 1008 8.125978 TGGATTTGCTCTTTTACATCTTCAAT 57.874 30.769 0.00 0.00 0.00 2.57
1007 1009 7.523293 TGGATTTGCTCTTTTACATCTTCAA 57.477 32.000 0.00 0.00 0.00 2.69
1008 1010 7.523293 TTGGATTTGCTCTTTTACATCTTCA 57.477 32.000 0.00 0.00 0.00 3.02
1041 1043 9.450807 GCAACTCCATTTACATCACAAATATAC 57.549 33.333 0.00 0.00 0.00 1.47
1042 1044 9.407380 AGCAACTCCATTTACATCACAAATATA 57.593 29.630 0.00 0.00 0.00 0.86
1043 1045 8.297470 AGCAACTCCATTTACATCACAAATAT 57.703 30.769 0.00 0.00 0.00 1.28
1044 1046 7.611467 AGAGCAACTCCATTTACATCACAAATA 59.389 33.333 0.00 0.00 0.00 1.40
1045 1047 6.435277 AGAGCAACTCCATTTACATCACAAAT 59.565 34.615 0.00 0.00 0.00 2.32
1046 1048 5.769662 AGAGCAACTCCATTTACATCACAAA 59.230 36.000 0.00 0.00 0.00 2.83
1047 1049 5.316167 AGAGCAACTCCATTTACATCACAA 58.684 37.500 0.00 0.00 0.00 3.33
1048 1050 4.910195 AGAGCAACTCCATTTACATCACA 58.090 39.130 0.00 0.00 0.00 3.58
1049 1051 5.886960 AAGAGCAACTCCATTTACATCAC 57.113 39.130 0.00 0.00 0.00 3.06
1050 1052 6.818644 GTCTAAGAGCAACTCCATTTACATCA 59.181 38.462 0.00 0.00 0.00 3.07
1051 1053 6.818644 TGTCTAAGAGCAACTCCATTTACATC 59.181 38.462 0.00 0.00 0.00 3.06
1052 1054 6.711277 TGTCTAAGAGCAACTCCATTTACAT 58.289 36.000 0.00 0.00 0.00 2.29
1053 1055 6.109156 TGTCTAAGAGCAACTCCATTTACA 57.891 37.500 0.00 0.00 0.00 2.41
1054 1056 7.617041 ATTGTCTAAGAGCAACTCCATTTAC 57.383 36.000 0.00 0.00 0.00 2.01
1055 1057 9.733556 TTAATTGTCTAAGAGCAACTCCATTTA 57.266 29.630 0.00 0.00 0.00 1.40
1056 1058 8.515414 GTTAATTGTCTAAGAGCAACTCCATTT 58.485 33.333 0.00 0.00 0.00 2.32
1057 1059 7.665559 TGTTAATTGTCTAAGAGCAACTCCATT 59.334 33.333 0.00 0.00 0.00 3.16
1058 1060 7.168219 TGTTAATTGTCTAAGAGCAACTCCAT 58.832 34.615 0.00 0.00 0.00 3.41
1059 1061 6.530120 TGTTAATTGTCTAAGAGCAACTCCA 58.470 36.000 0.00 0.00 0.00 3.86
1060 1062 7.334421 TGATGTTAATTGTCTAAGAGCAACTCC 59.666 37.037 0.00 0.00 0.00 3.85
1061 1063 8.171840 GTGATGTTAATTGTCTAAGAGCAACTC 58.828 37.037 0.00 0.00 0.00 3.01
1062 1064 7.119846 GGTGATGTTAATTGTCTAAGAGCAACT 59.880 37.037 0.00 0.00 28.52 3.16
1063 1065 7.119846 AGGTGATGTTAATTGTCTAAGAGCAAC 59.880 37.037 0.00 0.00 30.52 4.17
1064 1066 7.168219 AGGTGATGTTAATTGTCTAAGAGCAA 58.832 34.615 0.00 0.00 0.00 3.91
1065 1067 6.711277 AGGTGATGTTAATTGTCTAAGAGCA 58.289 36.000 0.00 0.00 0.00 4.26
1066 1068 7.617041 AAGGTGATGTTAATTGTCTAAGAGC 57.383 36.000 0.00 0.00 0.00 4.09
1067 1069 9.003658 ACAAAGGTGATGTTAATTGTCTAAGAG 57.996 33.333 0.00 0.00 0.00 2.85
1068 1070 8.918202 ACAAAGGTGATGTTAATTGTCTAAGA 57.082 30.769 0.00 0.00 0.00 2.10
1069 1071 9.398170 CAACAAAGGTGATGTTAATTGTCTAAG 57.602 33.333 0.00 0.00 38.90 2.18
1070 1072 7.865385 GCAACAAAGGTGATGTTAATTGTCTAA 59.135 33.333 0.00 0.00 38.90 2.10
1071 1073 7.230510 AGCAACAAAGGTGATGTTAATTGTCTA 59.769 33.333 0.00 0.00 38.90 2.59
1072 1074 6.040842 AGCAACAAAGGTGATGTTAATTGTCT 59.959 34.615 0.00 0.00 38.90 3.41
1073 1075 6.215845 AGCAACAAAGGTGATGTTAATTGTC 58.784 36.000 0.00 0.00 38.90 3.18
1074 1076 6.040842 AGAGCAACAAAGGTGATGTTAATTGT 59.959 34.615 0.00 0.00 38.90 2.71
1075 1077 6.449698 AGAGCAACAAAGGTGATGTTAATTG 58.550 36.000 0.00 0.00 38.90 2.32
1076 1078 6.655078 AGAGCAACAAAGGTGATGTTAATT 57.345 33.333 0.00 0.00 38.90 1.40
1077 1079 6.655078 AAGAGCAACAAAGGTGATGTTAAT 57.345 33.333 0.00 0.00 38.90 1.40
1078 1080 7.575414 TTAAGAGCAACAAAGGTGATGTTAA 57.425 32.000 0.00 0.00 38.90 2.01
1079 1081 7.284489 AGTTTAAGAGCAACAAAGGTGATGTTA 59.716 33.333 0.00 0.00 38.90 2.41
1080 1082 6.096846 AGTTTAAGAGCAACAAAGGTGATGTT 59.903 34.615 0.00 0.00 41.50 2.71
1081 1083 5.594317 AGTTTAAGAGCAACAAAGGTGATGT 59.406 36.000 0.00 0.00 30.48 3.06
1082 1084 6.076981 AGTTTAAGAGCAACAAAGGTGATG 57.923 37.500 0.00 0.00 0.00 3.07
1083 1085 6.715347 AAGTTTAAGAGCAACAAAGGTGAT 57.285 33.333 0.00 0.00 0.00 3.06
1084 1086 6.524101 AAAGTTTAAGAGCAACAAAGGTGA 57.476 33.333 0.00 0.00 0.00 4.02
1085 1087 7.595311 AAAAAGTTTAAGAGCAACAAAGGTG 57.405 32.000 0.00 0.00 0.00 4.00
1086 1088 7.762615 GGTAAAAAGTTTAAGAGCAACAAAGGT 59.237 33.333 0.00 0.00 0.00 3.50
1087 1089 7.979537 AGGTAAAAAGTTTAAGAGCAACAAAGG 59.020 33.333 0.00 0.00 0.00 3.11
1088 1090 8.926715 AGGTAAAAAGTTTAAGAGCAACAAAG 57.073 30.769 0.00 0.00 0.00 2.77
1089 1091 8.745590 AGAGGTAAAAAGTTTAAGAGCAACAAA 58.254 29.630 0.00 0.00 0.00 2.83
1090 1092 8.288689 AGAGGTAAAAAGTTTAAGAGCAACAA 57.711 30.769 0.00 0.00 0.00 2.83
1091 1093 7.012989 GGAGAGGTAAAAAGTTTAAGAGCAACA 59.987 37.037 0.00 0.00 0.00 3.33
1092 1094 7.361127 GGAGAGGTAAAAAGTTTAAGAGCAAC 58.639 38.462 0.00 0.00 0.00 4.17
1093 1095 6.489022 GGGAGAGGTAAAAAGTTTAAGAGCAA 59.511 38.462 0.00 0.00 0.00 3.91
1094 1096 6.002082 GGGAGAGGTAAAAAGTTTAAGAGCA 58.998 40.000 0.00 0.00 0.00 4.26
1095 1097 6.002082 TGGGAGAGGTAAAAAGTTTAAGAGC 58.998 40.000 0.00 0.00 0.00 4.09
1096 1098 7.501225 TGTTGGGAGAGGTAAAAAGTTTAAGAG 59.499 37.037 0.00 0.00 0.00 2.85
1097 1099 7.348033 TGTTGGGAGAGGTAAAAAGTTTAAGA 58.652 34.615 0.00 0.00 0.00 2.10
1098 1100 7.576861 TGTTGGGAGAGGTAAAAAGTTTAAG 57.423 36.000 0.00 0.00 0.00 1.85
1099 1101 7.616542 AGTTGTTGGGAGAGGTAAAAAGTTTAA 59.383 33.333 0.00 0.00 0.00 1.52
1100 1102 7.120716 AGTTGTTGGGAGAGGTAAAAAGTTTA 58.879 34.615 0.00 0.00 0.00 2.01
1101 1103 5.955959 AGTTGTTGGGAGAGGTAAAAAGTTT 59.044 36.000 0.00 0.00 0.00 2.66
1102 1104 5.516044 AGTTGTTGGGAGAGGTAAAAAGTT 58.484 37.500 0.00 0.00 0.00 2.66
1103 1105 5.125367 AGTTGTTGGGAGAGGTAAAAAGT 57.875 39.130 0.00 0.00 0.00 2.66
1104 1106 6.017357 GTGTAGTTGTTGGGAGAGGTAAAAAG 60.017 42.308 0.00 0.00 0.00 2.27
1105 1107 5.824097 GTGTAGTTGTTGGGAGAGGTAAAAA 59.176 40.000 0.00 0.00 0.00 1.94
1106 1108 5.131475 AGTGTAGTTGTTGGGAGAGGTAAAA 59.869 40.000 0.00 0.00 0.00 1.52
1107 1109 4.657039 AGTGTAGTTGTTGGGAGAGGTAAA 59.343 41.667 0.00 0.00 0.00 2.01
1108 1110 4.228824 AGTGTAGTTGTTGGGAGAGGTAA 58.771 43.478 0.00 0.00 0.00 2.85
1109 1111 3.853207 AGTGTAGTTGTTGGGAGAGGTA 58.147 45.455 0.00 0.00 0.00 3.08
1110 1112 2.690840 AGTGTAGTTGTTGGGAGAGGT 58.309 47.619 0.00 0.00 0.00 3.85
1111 1113 3.771577 AAGTGTAGTTGTTGGGAGAGG 57.228 47.619 0.00 0.00 0.00 3.69
1112 1114 5.639506 CACATAAGTGTAGTTGTTGGGAGAG 59.360 44.000 0.00 0.00 40.92 3.20
1113 1115 5.512404 CCACATAAGTGTAGTTGTTGGGAGA 60.512 44.000 0.00 0.00 44.39 3.71
1114 1116 4.695455 CCACATAAGTGTAGTTGTTGGGAG 59.305 45.833 0.00 0.00 44.39 4.30
1165 1167 7.275183 TCTCACTATTACCAACAAGGATCATG 58.725 38.462 0.00 0.00 41.22 3.07
1216 1231 8.027524 AGATATTGTTATCTGAAAGCTCCTCA 57.972 34.615 0.00 0.00 42.40 3.86
1295 1312 2.251818 AGGCTCTCTGTAAGCTTGTCA 58.748 47.619 9.86 7.57 39.75 3.58
1314 1331 6.301169 AGGAGAGTTGGGATTTGTAGTTAG 57.699 41.667 0.00 0.00 0.00 2.34
1318 1335 5.045869 TGGTTAGGAGAGTTGGGATTTGTAG 60.046 44.000 0.00 0.00 0.00 2.74
1324 1341 2.780010 CCATGGTTAGGAGAGTTGGGAT 59.220 50.000 2.57 0.00 0.00 3.85
1332 1349 0.343372 AGGAGGCCATGGTTAGGAGA 59.657 55.000 14.67 0.00 0.00 3.71
1455 1478 0.168128 CCGACGATTTTTGTGGCTCC 59.832 55.000 0.00 0.00 0.00 4.70
1538 1568 1.699656 CGGCGAACTTGATGGCTGAG 61.700 60.000 0.00 0.00 32.72 3.35
1539 1569 1.741401 CGGCGAACTTGATGGCTGA 60.741 57.895 0.00 0.00 32.72 4.26
1577 1622 2.185608 GCGAGTTCTCTGCCTCCC 59.814 66.667 0.00 0.00 0.00 4.30
1584 1629 2.282958 TCCACCGGCGAGTTCTCT 60.283 61.111 9.30 0.00 0.00 3.10
2029 2074 1.661341 CACCACTGAAGGCTATGAGC 58.339 55.000 0.00 0.00 41.46 4.26
2030 2075 1.833630 TCCACCACTGAAGGCTATGAG 59.166 52.381 0.00 0.00 0.00 2.90
2031 2076 1.833630 CTCCACCACTGAAGGCTATGA 59.166 52.381 0.00 0.00 0.00 2.15
2033 2078 1.556911 CACTCCACCACTGAAGGCTAT 59.443 52.381 0.00 0.00 0.00 2.97
2081 2142 2.717485 GCACCTACATGCATGGCG 59.283 61.111 29.41 18.91 45.39 5.69
2222 3258 6.106673 CAGGAGTATTTGTTACTGGGTACTG 58.893 44.000 0.00 0.00 41.35 2.74
2223 3259 5.338137 GCAGGAGTATTTGTTACTGGGTACT 60.338 44.000 0.00 0.00 41.35 2.73
2224 3260 4.874396 GCAGGAGTATTTGTTACTGGGTAC 59.126 45.833 0.00 0.00 41.35 3.34
2246 6368 3.065233 TGTGACACTCTGTTTGATGTTGC 59.935 43.478 7.20 0.00 0.00 4.17
2274 6397 6.259387 TGCTGCTCTGATAAGTGATAACATTG 59.741 38.462 0.00 0.00 0.00 2.82
2284 6407 7.039152 ACAGTATATGATGCTGCTCTGATAAGT 60.039 37.037 0.00 0.30 45.40 2.24
2285 6408 7.321908 ACAGTATATGATGCTGCTCTGATAAG 58.678 38.462 0.00 0.00 45.40 1.73
2286 6409 7.237209 ACAGTATATGATGCTGCTCTGATAA 57.763 36.000 0.00 0.00 45.40 1.75
2287 6410 6.847421 ACAGTATATGATGCTGCTCTGATA 57.153 37.500 0.00 0.00 45.40 2.15
2288 6411 5.741962 ACAGTATATGATGCTGCTCTGAT 57.258 39.130 0.00 0.00 45.40 2.90
2289 6412 5.295152 CAACAGTATATGATGCTGCTCTGA 58.705 41.667 0.00 0.00 45.40 3.27
2290 6413 5.593183 CAACAGTATATGATGCTGCTCTG 57.407 43.478 0.00 0.00 45.40 3.35
2333 6456 4.475028 CAAACTGCAATAACATGCTTCGA 58.525 39.130 0.00 0.00 46.54 3.71
2334 6457 3.059834 GCAAACTGCAATAACATGCTTCG 59.940 43.478 0.00 0.00 46.54 3.79
2335 6458 4.572950 GCAAACTGCAATAACATGCTTC 57.427 40.909 0.00 0.00 46.54 3.86
2380 6503 1.201424 ATTGGAACGGAGGGAGTACC 58.799 55.000 0.00 0.00 40.67 3.34
2436 8220 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
2448 8232 4.490706 AGTTGGTACTCCCTCTGTAAACT 58.509 43.478 0.00 0.00 0.00 2.66
2449 8233 4.886496 AGTTGGTACTCCCTCTGTAAAC 57.114 45.455 0.00 0.00 0.00 2.01
2466 8250 8.988064 AACACATCAGTAGTACTCATTAGTTG 57.012 34.615 0.00 0.00 37.15 3.16
2530 8775 2.216898 GAAGTGCCCTGATCAGCATAC 58.783 52.381 17.76 13.91 41.86 2.39
2861 9218 0.901827 AGTATGTGATGGGCGTGACA 59.098 50.000 0.00 0.00 0.00 3.58
2874 9231 5.256806 AGGGAAGCTTTAAACCAGTATGT 57.743 39.130 0.00 0.00 0.00 2.29
2876 9233 7.453141 AGATAGGGAAGCTTTAAACCAGTAT 57.547 36.000 0.00 0.00 0.00 2.12
2888 9245 4.476479 ACCATCTGAAAAGATAGGGAAGCT 59.524 41.667 0.00 0.00 0.00 3.74
2896 9269 7.265673 CCGTAAAGAGACCATCTGAAAAGATA 58.734 38.462 0.00 0.00 38.67 1.98
3040 9413 0.752054 TCAGGCAAGCAAAACCAAGG 59.248 50.000 0.00 0.00 0.00 3.61
3090 9463 9.173021 CACATAGTGAAATTACATACCTTCCAA 57.827 33.333 0.00 0.00 35.23 3.53
3100 9473 7.230510 ACAAAGGAAGCACATAGTGAAATTACA 59.769 33.333 0.58 0.00 35.23 2.41
3304 9703 4.465512 CACGGCGATTGCAGCACC 62.466 66.667 16.62 0.00 45.35 5.01
3390 9790 4.301072 TGGAAGGGTGTAGAAAATGGAG 57.699 45.455 0.00 0.00 0.00 3.86
3423 9823 1.686355 CCTGGTTGGTTGTTGCTGTA 58.314 50.000 0.00 0.00 0.00 2.74
3451 9851 5.240623 TCTGCGTTAATTCATGTTTGGAGTT 59.759 36.000 0.00 0.00 0.00 3.01
3464 9865 8.040727 TGCATATAGTATCCATCTGCGTTAATT 58.959 33.333 0.00 0.00 30.40 1.40
3466 9867 6.930731 TGCATATAGTATCCATCTGCGTTAA 58.069 36.000 0.00 0.00 30.40 2.01
3467 9868 6.524101 TGCATATAGTATCCATCTGCGTTA 57.476 37.500 0.00 0.00 30.40 3.18
3474 9875 9.526713 CTGTAAGACATGCATATAGTATCCATC 57.473 37.037 0.00 0.00 34.07 3.51
3492 9893 3.402628 TCAAACCTGGAGCTGTAAGAC 57.597 47.619 0.00 0.00 34.07 3.01
3496 9897 5.692115 TGATATTCAAACCTGGAGCTGTA 57.308 39.130 0.00 0.00 0.00 2.74
3498 9899 5.008415 GTGATGATATTCAAACCTGGAGCTG 59.992 44.000 0.00 0.00 0.00 4.24
3499 9900 5.128919 GTGATGATATTCAAACCTGGAGCT 58.871 41.667 0.00 0.00 0.00 4.09
3500 9901 4.024556 CGTGATGATATTCAAACCTGGAGC 60.025 45.833 0.00 0.00 0.00 4.70
3502 9903 4.163268 TCCGTGATGATATTCAAACCTGGA 59.837 41.667 0.00 0.00 0.00 3.86
3530 9983 5.297776 CAGGATACAAGAAACCCATGATGTC 59.702 44.000 0.00 0.00 41.41 3.06
3531 9984 5.195940 CAGGATACAAGAAACCCATGATGT 58.804 41.667 0.00 0.00 41.41 3.06
3532 9985 4.581824 CCAGGATACAAGAAACCCATGATG 59.418 45.833 0.00 0.00 41.41 3.07
3543 9996 2.100197 CAGGTCGTCCAGGATACAAGA 58.900 52.381 0.51 0.00 41.41 3.02
3698 10155 6.615264 ATGATCATTGTTCATGTGACTAGC 57.385 37.500 1.18 0.00 32.67 3.42
3715 10172 7.981789 GTGACTATCTTGGACAAGTAATGATCA 59.018 37.037 11.44 0.00 39.38 2.92
3718 10175 7.239763 TGTGACTATCTTGGACAAGTAATGA 57.760 36.000 11.44 0.00 39.38 2.57
3855 10379 2.092212 GGATTGTGTCCATCATCCACCT 60.092 50.000 0.00 0.00 46.96 4.00
4192 11137 4.020573 GCTAAAAGCCAGGTACCCAAATTT 60.021 41.667 8.74 6.88 34.48 1.82
4220 11471 7.442062 CCAAACAAGATTTGACATTAAAGCCTT 59.558 33.333 0.98 0.00 0.00 4.35
4232 11483 4.952071 TTGCCATCCAAACAAGATTTGA 57.048 36.364 0.98 0.00 0.00 2.69
4255 11506 8.718102 ACTGATGTTACTACGCAATTAAAGAT 57.282 30.769 0.00 0.00 0.00 2.40
4259 11510 9.589111 TTCATACTGATGTTACTACGCAATTAA 57.411 29.630 0.00 0.00 34.41 1.40
4792 12432 4.342092 CCCTTGGTGTTGAGTTCTGATTTT 59.658 41.667 0.00 0.00 0.00 1.82
4817 12457 6.729187 ACAGTACAATTTTCTGAAGTTCTGC 58.271 36.000 4.17 0.00 33.93 4.26
4818 12458 9.046296 ACTACAGTACAATTTTCTGAAGTTCTG 57.954 33.333 4.17 3.79 33.93 3.02
4835 12475 1.888512 TGACCGTGGGAACTACAGTAC 59.111 52.381 0.00 0.00 0.00 2.73
4863 12564 5.183140 AGTGCCGTTGCTTCAGTTAATATTT 59.817 36.000 0.00 0.00 38.71 1.40
4888 12589 1.846439 AGTAGCCATGCCACAGGTTAT 59.154 47.619 0.00 0.00 0.00 1.89
4902 12603 4.123506 GGATTTCTGCAGAGTAAGTAGCC 58.876 47.826 17.43 7.85 0.00 3.93
4986 12733 1.221840 CCTCCGGCTGTGCAATACT 59.778 57.895 0.00 0.00 0.00 2.12
4988 12735 0.975556 TCTCCTCCGGCTGTGCAATA 60.976 55.000 0.00 0.00 0.00 1.90
4990 12737 2.293318 ATCTCCTCCGGCTGTGCAA 61.293 57.895 0.00 0.00 0.00 4.08
5077 12877 4.465446 TCCTCCTCTGGCCCTCCG 62.465 72.222 0.00 0.00 34.14 4.63
5112 12912 0.035598 TTTGCCCGGTCTGATTTCGA 59.964 50.000 0.00 0.00 0.00 3.71
5120 12920 4.394712 CGGAGCTTTGCCCGGTCT 62.395 66.667 0.00 0.00 38.21 3.85
5136 12936 4.609691 AAATTAGGATTGTGCCGTTACG 57.390 40.909 0.00 0.00 0.00 3.18
5137 12937 5.945155 TCAAAATTAGGATTGTGCCGTTAC 58.055 37.500 0.00 0.00 31.64 2.50
5138 12938 6.375736 TGATCAAAATTAGGATTGTGCCGTTA 59.624 34.615 0.00 0.00 31.64 3.18
5140 12940 4.704540 TGATCAAAATTAGGATTGTGCCGT 59.295 37.500 0.00 0.00 31.64 5.68
5141 12941 5.247507 TGATCAAAATTAGGATTGTGCCG 57.752 39.130 0.00 0.00 31.64 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.