Multiple sequence alignment - TraesCS1A01G379300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G379300 chr1A 100.000 5334 0 0 1 5334 551488560 551483227 0.000000e+00 9851.0
1 TraesCS1A01G379300 chr1A 94.059 101 4 2 706 804 239904136 239904036 9.250000e-33 152.0
2 TraesCS1A01G379300 chr1D 95.319 2072 74 13 2665 4729 459051265 459049210 0.000000e+00 3267.0
3 TraesCS1A01G379300 chr1D 93.472 1011 30 13 792 1784 459053592 459052600 0.000000e+00 1469.0
4 TraesCS1A01G379300 chr1D 96.117 824 21 7 1850 2666 459052322 459051503 0.000000e+00 1334.0
5 TraesCS1A01G379300 chr1D 92.130 432 27 7 1 427 459054725 459054296 2.130000e-168 603.0
6 TraesCS1A01G379300 chr1D 82.975 558 36 29 4314 4854 215042877 215043392 2.930000e-122 449.0
7 TraesCS1A01G379300 chr1D 86.726 339 27 10 4301 4634 339905232 339905557 1.410000e-95 361.0
8 TraesCS1A01G379300 chr1D 93.976 166 9 1 5148 5312 459048827 459048662 3.190000e-62 250.0
9 TraesCS1A01G379300 chr1D 86.087 230 8 7 4730 4948 459049036 459048820 5.380000e-55 226.0
10 TraesCS1A01G379300 chr1D 82.824 262 17 13 457 690 459053857 459053596 5.410000e-50 209.0
11 TraesCS1A01G379300 chr1D 87.500 112 6 2 4763 4866 66760310 66760421 7.250000e-24 122.0
12 TraesCS1A01G379300 chr1D 96.364 55 2 0 1799 1853 459052405 459052351 2.050000e-14 91.6
13 TraesCS1A01G379300 chr1D 97.778 45 1 0 5153 5197 215043432 215043476 1.590000e-10 78.7
14 TraesCS1A01G379300 chr1B 94.402 1947 77 19 2607 4527 631230518 631228578 0.000000e+00 2963.0
15 TraesCS1A01G379300 chr1B 92.372 957 29 13 792 1726 631232484 631231550 0.000000e+00 1323.0
16 TraesCS1A01G379300 chr1B 91.462 773 32 19 1727 2465 631231459 631230687 0.000000e+00 1031.0
17 TraesCS1A01G379300 chr1B 81.505 319 25 16 4644 4948 631228534 631228236 1.160000e-56 231.0
18 TraesCS1A01G379300 chr1B 95.489 133 6 0 2511 2643 631230686 631230554 4.180000e-51 213.0
19 TraesCS1A01G379300 chr1B 95.789 95 4 0 704 798 354227937 354228031 2.570000e-33 154.0
20 TraesCS1A01G379300 chr1B 88.393 112 5 2 4763 4866 513973772 513973883 1.560000e-25 128.0
21 TraesCS1A01G379300 chr1B 87.500 112 6 2 4763 4866 542807859 542807970 7.250000e-24 122.0
22 TraesCS1A01G379300 chr1B 97.297 37 1 0 2607 2643 631230554 631230518 4.460000e-06 63.9
23 TraesCS1A01G379300 chr2A 89.780 1634 120 22 2414 4026 74118282 74116675 0.000000e+00 2049.0
24 TraesCS1A01G379300 chr2A 91.705 651 37 10 3588 4231 74109273 74108633 0.000000e+00 887.0
25 TraesCS1A01G379300 chr2A 83.584 865 101 20 894 1725 74120052 74119196 0.000000e+00 773.0
26 TraesCS1A01G379300 chr2A 88.174 575 53 13 2815 3378 74137558 74136988 0.000000e+00 671.0
27 TraesCS1A01G379300 chr2A 89.179 536 43 10 1007 1528 74138982 74138448 0.000000e+00 654.0
28 TraesCS1A01G379300 chr2A 86.517 445 50 4 3453 3890 74136963 74136522 1.040000e-131 481.0
29 TraesCS1A01G379300 chr2A 91.150 339 20 8 927 1259 74139876 74139542 8.150000e-123 451.0
30 TraesCS1A01G379300 chr2A 91.411 163 9 2 5150 5312 74108317 74108160 8.990000e-53 219.0
31 TraesCS1A01G379300 chr2A 90.909 121 5 3 4829 4948 74108427 74108312 1.990000e-34 158.0
32 TraesCS1A01G379300 chr2A 85.093 161 16 2 1696 1853 74119192 74119037 1.990000e-34 158.0
33 TraesCS1A01G379300 chr2A 95.745 94 3 1 697 790 712843530 712843622 3.330000e-32 150.0
34 TraesCS1A01G379300 chr2A 95.652 92 4 0 706 797 592785675 592785584 1.200000e-31 148.0
35 TraesCS1A01G379300 chr2B 88.577 1637 122 26 2414 4026 114053920 114052325 0.000000e+00 1927.0
36 TraesCS1A01G379300 chr2B 84.365 985 116 19 894 1855 114056853 114055884 0.000000e+00 931.0
37 TraesCS1A01G379300 chr2B 84.751 905 67 29 3940 4809 114049890 114049022 0.000000e+00 841.0
38 TraesCS1A01G379300 chr2B 89.465 617 46 16 927 1528 114063342 114062730 0.000000e+00 761.0
39 TraesCS1A01G379300 chr2B 89.081 577 51 10 2815 3383 114061878 114061306 0.000000e+00 706.0
40 TraesCS1A01G379300 chr2B 97.771 314 7 0 3559 3872 114050209 114049896 4.700000e-150 542.0
41 TraesCS1A01G379300 chr2B 86.199 442 52 4 3455 3890 114061281 114060843 2.250000e-128 470.0
42 TraesCS1A01G379300 chr2B 90.995 211 16 2 1885 2093 114062384 114062175 1.130000e-71 281.0
43 TraesCS1A01G379300 chr2B 89.706 136 9 2 5148 5283 114048824 114048694 9.190000e-38 169.0
44 TraesCS1A01G379300 chr2B 88.393 112 5 2 4763 4866 71030257 71030368 1.560000e-25 128.0
45 TraesCS1A01G379300 chr2B 85.593 118 7 4 4832 4948 114048925 114048817 1.210000e-21 115.0
46 TraesCS1A01G379300 chr2B 87.619 105 4 3 4763 4858 12709635 12709739 4.370000e-21 113.0
47 TraesCS1A01G379300 chr2D 89.951 1443 107 20 2601 4025 74951059 74949637 0.000000e+00 1827.0
48 TraesCS1A01G379300 chr2D 83.383 999 97 38 894 1853 74953074 74952106 0.000000e+00 861.0
49 TraesCS1A01G379300 chr2D 87.481 671 63 16 875 1528 74969089 74968423 0.000000e+00 754.0
50 TraesCS1A01G379300 chr2D 90.000 590 46 11 2815 3396 74967570 74966986 0.000000e+00 750.0
51 TraesCS1A01G379300 chr2D 86.600 597 46 17 4235 4809 74939293 74938709 3.510000e-176 628.0
52 TraesCS1A01G379300 chr2D 78.983 885 118 39 3444 4310 74966985 74966151 4.700000e-150 542.0
53 TraesCS1A01G379300 chr2D 82.548 573 36 28 4301 4854 365349540 365349013 3.790000e-121 446.0
54 TraesCS1A01G379300 chr2D 93.122 189 11 2 1907 2093 74968060 74967872 5.260000e-70 276.0
55 TraesCS1A01G379300 chr2D 89.730 185 10 3 5150 5334 74938533 74938358 1.490000e-55 228.0
56 TraesCS1A01G379300 chr2D 90.062 161 16 0 2824 2984 145674108 145673948 5.410000e-50 209.0
57 TraesCS1A01G379300 chr2D 91.200 125 5 3 4825 4948 74938647 74938528 1.190000e-36 165.0
58 TraesCS1A01G379300 chr2D 95.082 61 3 0 5153 5213 365348973 365348913 4.400000e-16 97.1
59 TraesCS1A01G379300 chr2D 95.652 46 2 0 645 690 74939431 74939386 2.060000e-09 75.0
60 TraesCS1A01G379300 chr2D 97.674 43 1 0 4896 4938 365349016 365348974 2.060000e-09 75.0
61 TraesCS1A01G379300 chr2D 93.750 48 1 2 4160 4206 74939339 74939293 2.670000e-08 71.3
62 TraesCS1A01G379300 chr5A 85.782 211 26 4 1 208 42732678 42732887 2.500000e-53 220.0
63 TraesCS1A01G379300 chr5A 96.053 76 2 1 5079 5153 707035683 707035608 7.250000e-24 122.0
64 TraesCS1A01G379300 chr6D 88.623 167 16 3 78 242 151765807 151765972 3.260000e-47 200.0
65 TraesCS1A01G379300 chr6B 86.905 168 20 2 78 243 276229488 276229655 2.540000e-43 187.0
66 TraesCS1A01G379300 chr6B 87.500 112 6 2 4763 4866 208496504 208496393 7.250000e-24 122.0
67 TraesCS1A01G379300 chr6A 95.789 95 3 1 702 795 3339455 3339361 9.250000e-33 152.0
68 TraesCS1A01G379300 chr5B 94.000 100 2 2 694 790 331307503 331307405 1.200000e-31 148.0
69 TraesCS1A01G379300 chr5B 87.500 112 6 2 4763 4866 43858231 43858120 7.250000e-24 122.0
70 TraesCS1A01G379300 chr4A 93.939 99 5 1 703 801 609073819 609073916 1.200000e-31 148.0
71 TraesCS1A01G379300 chr4A 92.308 104 5 3 696 797 107430138 107430240 1.550000e-30 145.0
72 TraesCS1A01G379300 chrUn 92.233 103 7 1 689 791 180382653 180382754 1.550000e-30 145.0
73 TraesCS1A01G379300 chrUn 87.156 109 6 2 4763 4863 93959132 93959240 3.380000e-22 117.0
74 TraesCS1A01G379300 chr7A 88.393 112 5 2 4763 4866 727859880 727859991 1.560000e-25 128.0
75 TraesCS1A01G379300 chr7D 87.500 112 6 2 4763 4866 568458972 568459083 7.250000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G379300 chr1A 551483227 551488560 5333 True 9851.000000 9851 100.000000 1 5334 1 chr1A.!!$R2 5333
1 TraesCS1A01G379300 chr1D 459048662 459054725 6063 True 931.200000 3267 92.036125 1 5312 8 chr1D.!!$R1 5311
2 TraesCS1A01G379300 chr1D 215042877 215043476 599 False 263.850000 449 90.376500 4314 5197 2 chr1D.!!$F3 883
3 TraesCS1A01G379300 chr1B 631228236 631232484 4248 True 970.816667 2963 92.087833 792 4948 6 chr1B.!!$R1 4156
4 TraesCS1A01G379300 chr2A 74116675 74120052 3377 True 993.333333 2049 86.152333 894 4026 3 chr2A.!!$R3 3132
5 TraesCS1A01G379300 chr2A 74136522 74139876 3354 True 564.250000 671 88.755000 927 3890 4 chr2A.!!$R4 2963
6 TraesCS1A01G379300 chr2A 74108160 74109273 1113 True 421.333333 887 91.341667 3588 5312 3 chr2A.!!$R2 1724
7 TraesCS1A01G379300 chr2B 114048694 114063342 14648 True 674.300000 1927 88.650300 894 5283 10 chr2B.!!$R1 4389
8 TraesCS1A01G379300 chr2D 74949637 74953074 3437 True 1344.000000 1827 86.667000 894 4025 2 chr2D.!!$R3 3131
9 TraesCS1A01G379300 chr2D 74966151 74969089 2938 True 580.500000 754 87.396500 875 4310 4 chr2D.!!$R4 3435
10 TraesCS1A01G379300 chr2D 74938358 74939431 1073 True 233.460000 628 91.386400 645 5334 5 chr2D.!!$R2 4689
11 TraesCS1A01G379300 chr2D 365348913 365349540 627 True 206.033333 446 91.768000 4301 5213 3 chr2D.!!$R5 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 249 0.258484 TATTGGATGGGTGGGCACTG 59.742 55.000 0.00 0.00 0.00 3.66 F
580 997 0.541863 AGGATTGTAGCCCCTTGTCG 59.458 55.000 0.00 0.00 0.00 4.35 F
1646 2993 1.549203 AATCACATTGTGGTCTGGCC 58.451 50.000 16.46 0.00 33.87 5.36 F
1749 3221 2.634982 TGATTTTGCATCAAGTCGGC 57.365 45.000 0.00 0.00 0.00 5.54 F
2559 12395 2.754472 TGTCCAGACATGTCACTTTCG 58.246 47.619 27.02 8.24 36.21 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 2993 0.038166 ATACACCAGCCACAACCCAG 59.962 55.000 0.0 0.00 0.0 4.45 R
2549 12385 1.414919 ACTGTAAGCCCGAAAGTGACA 59.585 47.619 0.0 0.00 37.6 3.58 R
2559 12395 2.268298 CACGTATGTCACTGTAAGCCC 58.732 52.381 0.0 0.00 37.6 5.19 R
2686 12999 3.552684 CCCACCAAAAGCATACAGTGTTG 60.553 47.826 0.0 0.95 0.0 3.33 R
4491 17414 1.003580 TGAACAGCCTCCTCAATCCAC 59.996 52.381 0.0 0.00 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.350027 GCCAAATAAAATGAATGGGTTTTGGG 60.350 38.462 11.71 0.00 41.22 4.12
31 32 2.857186 AATGAATGGGTTTTGGGTGC 57.143 45.000 0.00 0.00 0.00 5.01
42 43 1.827399 TTTGGGTGCGGAGAGAGGAC 61.827 60.000 0.00 0.00 0.00 3.85
43 44 3.827898 GGGTGCGGAGAGAGGACG 61.828 72.222 0.00 0.00 0.00 4.79
67 69 1.078891 TTGGGACCCAAGCATGCAT 59.921 52.632 22.74 4.57 38.75 3.96
85 87 2.789917 GCGGCATGCACTTCTCTG 59.210 61.111 21.36 0.00 45.45 3.35
89 91 0.671781 GGCATGCACTTCTCTGACGT 60.672 55.000 21.36 0.00 0.00 4.34
102 105 5.779529 TCTCTGACGTAAGGTAGTTGTTT 57.220 39.130 0.00 0.00 46.39 2.83
119 122 8.974408 GTAGTTGTTTTTGTGTGAGAAAAGTTT 58.026 29.630 0.00 0.00 0.00 2.66
121 124 7.708752 AGTTGTTTTTGTGTGAGAAAAGTTTGA 59.291 29.630 0.00 0.00 0.00 2.69
245 248 1.006813 TTATTGGATGGGTGGGCACT 58.993 50.000 0.00 0.00 0.00 4.40
246 249 0.258484 TATTGGATGGGTGGGCACTG 59.742 55.000 0.00 0.00 0.00 3.66
287 290 6.070824 ACTGTTTTGACCCTTTGATCAAACTT 60.071 34.615 16.91 4.12 42.87 2.66
291 294 8.817100 GTTTTGACCCTTTGATCAAACTTTAAG 58.183 33.333 16.91 6.21 42.87 1.85
302 305 9.528018 TTGATCAAACTTTAAGACAATTTGACC 57.472 29.630 5.45 3.02 40.88 4.02
303 306 8.141268 TGATCAAACTTTAAGACAATTTGACCC 58.859 33.333 9.56 6.76 40.88 4.46
311 315 4.823790 AGACAATTTGACCCGTTTGTAC 57.176 40.909 2.79 0.00 32.73 2.90
343 347 1.065551 GGCCATTTTACTGTCGCCATC 59.934 52.381 0.00 0.00 36.38 3.51
382 387 4.073293 AGACGGGCTACCATAGATTTTG 57.927 45.455 0.00 0.00 36.13 2.44
394 399 7.790782 ACCATAGATTTTGTTGGGTTATTGT 57.209 32.000 0.00 0.00 33.39 2.71
405 410 2.817258 TGGGTTATTGTTTCTTCCGCAG 59.183 45.455 0.00 0.00 0.00 5.18
406 411 2.817844 GGGTTATTGTTTCTTCCGCAGT 59.182 45.455 0.00 0.00 0.00 4.40
414 420 0.817634 TTCTTCCGCAGTGTGGTTGG 60.818 55.000 21.92 12.92 34.40 3.77
437 443 5.550403 GGGATTCCCATAAGTATAAGGGTGA 59.450 44.000 17.36 0.00 44.65 4.02
438 444 6.045106 GGGATTCCCATAAGTATAAGGGTGAA 59.955 42.308 17.36 0.00 44.65 3.18
439 445 7.168905 GGATTCCCATAAGTATAAGGGTGAAG 58.831 42.308 0.00 0.00 40.34 3.02
440 446 7.202195 GGATTCCCATAAGTATAAGGGTGAAGT 60.202 40.741 0.00 0.00 40.34 3.01
441 447 8.808240 ATTCCCATAAGTATAAGGGTGAAGTA 57.192 34.615 0.00 0.00 40.34 2.24
442 448 7.850935 TCCCATAAGTATAAGGGTGAAGTAG 57.149 40.000 0.00 0.00 40.34 2.57
444 450 6.042781 CCCATAAGTATAAGGGTGAAGTAGCA 59.957 42.308 0.00 0.00 35.66 3.49
445 451 7.155328 CCATAAGTATAAGGGTGAAGTAGCAG 58.845 42.308 0.00 0.00 0.00 4.24
446 452 4.674281 AGTATAAGGGTGAAGTAGCAGC 57.326 45.455 0.00 0.00 35.63 5.25
453 459 1.340017 GGTGAAGTAGCAGCCCATCAA 60.340 52.381 0.00 0.00 0.00 2.57
454 460 1.740025 GTGAAGTAGCAGCCCATCAAC 59.260 52.381 0.00 0.00 0.00 3.18
455 461 1.350684 TGAAGTAGCAGCCCATCAACA 59.649 47.619 0.00 0.00 0.00 3.33
463 878 3.194116 AGCAGCCCATCAACAAGTATTTG 59.806 43.478 0.00 0.00 40.24 2.32
470 885 5.392380 CCCATCAACAAGTATTTGTCTCAGC 60.392 44.000 3.87 0.00 46.54 4.26
477 892 6.951971 ACAAGTATTTGTCTCAGCTAGGAAT 58.048 36.000 0.00 0.00 44.00 3.01
482 897 5.745312 TTTGTCTCAGCTAGGAATCAAGA 57.255 39.130 0.00 0.00 0.00 3.02
495 910 7.712639 GCTAGGAATCAAGATTGTCAATACAGA 59.287 37.037 0.00 0.00 36.83 3.41
497 912 8.273780 AGGAATCAAGATTGTCAATACAGAAC 57.726 34.615 0.00 0.00 36.83 3.01
520 935 4.598062 GAGTCACCTAACAAACAAAGTGC 58.402 43.478 0.00 0.00 0.00 4.40
527 942 1.661197 CAAACAAAGTGCGCGGCAT 60.661 52.632 8.83 0.00 41.91 4.40
531 946 4.107051 AAAGTGCGCGGCATCTGC 62.107 61.111 8.83 0.00 41.91 4.26
556 971 1.720694 AAACACGCTTGTCCCCAACG 61.721 55.000 0.00 0.00 33.55 4.10
569 984 1.408127 CCCCAACGCATCAGGATTGTA 60.408 52.381 0.00 0.00 0.00 2.41
570 985 1.942657 CCCAACGCATCAGGATTGTAG 59.057 52.381 0.00 0.00 0.00 2.74
571 986 1.331756 CCAACGCATCAGGATTGTAGC 59.668 52.381 0.00 0.00 0.00 3.58
574 991 0.886490 CGCATCAGGATTGTAGCCCC 60.886 60.000 0.00 0.00 0.00 5.80
580 997 0.541863 AGGATTGTAGCCCCTTGTCG 59.458 55.000 0.00 0.00 0.00 4.35
612 1029 9.573133 GTCACAAGATTAAAACCAATTGATAGG 57.427 33.333 7.12 0.00 0.00 2.57
630 1073 6.767456 TGATAGGAAGGTAAAACGGTAACAA 58.233 36.000 0.00 0.00 0.00 2.83
684 1127 6.072728 GCAGTTTCACAGTACAAATGGTGATA 60.073 38.462 0.00 0.00 39.73 2.15
766 1209 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
767 1210 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
768 1211 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
769 1212 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
781 1224 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
782 1225 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
783 1226 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
784 1227 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
785 1228 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
786 1229 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
787 1230 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
788 1231 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
789 1232 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
790 1233 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
798 1241 3.947612 ACGGAGGGAGTAGATGTTAGA 57.052 47.619 0.00 0.00 0.00 2.10
804 1247 5.106078 GGAGGGAGTAGATGTTAGAATAGCG 60.106 48.000 0.00 0.00 0.00 4.26
830 1273 2.489722 GAGGGGAAGAGAATTGTGCAAC 59.510 50.000 0.00 0.00 37.35 4.17
848 1291 2.279451 CGGCGCTGATCCAATCGA 60.279 61.111 11.90 0.00 0.00 3.59
1538 2842 3.181518 GGTGATGGATTTTTGCATTTGCG 60.182 43.478 0.00 0.00 45.83 4.85
1540 2844 3.679025 TGATGGATTTTTGCATTTGCGTC 59.321 39.130 0.00 0.00 45.83 5.19
1567 2914 8.564574 TGTCTAGTTTCCATGTTTTACATTGTC 58.435 33.333 0.00 0.00 36.53 3.18
1574 2921 5.946972 TCCATGTTTTACATTGTCCCGTAAT 59.053 36.000 0.00 0.00 36.53 1.89
1575 2922 7.110810 TCCATGTTTTACATTGTCCCGTAATA 58.889 34.615 0.00 0.00 36.53 0.98
1576 2923 7.610692 TCCATGTTTTACATTGTCCCGTAATAA 59.389 33.333 0.00 0.00 36.53 1.40
1591 2938 6.816640 TCCCGTAATAAAGATTCAACTGTCAG 59.183 38.462 0.00 0.00 0.00 3.51
1611 2958 2.000447 GACATGGGTCGTAAAGCTGTC 59.000 52.381 0.00 0.00 33.68 3.51
1625 2972 8.566260 TCGTAAAGCTGTCTAGTAGGATAAATC 58.434 37.037 0.00 0.00 0.00 2.17
1644 2991 5.395682 AATCAAATCACATTGTGGTCTGG 57.604 39.130 16.46 3.49 33.87 3.86
1646 2993 1.549203 AATCACATTGTGGTCTGGCC 58.451 50.000 16.46 0.00 33.87 5.36
1725 3197 9.401873 GTTTAATGTTTTGGTGGTATGAACTAC 57.598 33.333 0.00 0.00 36.42 2.73
1726 3198 8.693120 TTAATGTTTTGGTGGTATGAACTACA 57.307 30.769 0.00 0.00 38.76 2.74
1749 3221 2.634982 TGATTTTGCATCAAGTCGGC 57.365 45.000 0.00 0.00 0.00 5.54
1786 3264 5.951747 ACAATTACCACCTTATGCTTGACAT 59.048 36.000 0.00 0.00 43.18 3.06
1831 3483 9.601217 GTTTACCTAGATCATACAGTGAATTGT 57.399 33.333 0.00 0.00 40.97 2.71
1835 3487 7.124901 ACCTAGATCATACAGTGAATTGTCTGT 59.875 37.037 13.99 13.99 45.21 3.41
1854 3538 7.254852 TGTCTGTAGTTTCACAAATTGGTTTC 58.745 34.615 0.00 0.00 0.00 2.78
1949 3641 4.730487 CTGGAGAAGGCCCAGTTG 57.270 61.111 0.00 0.00 44.66 3.16
2000 3692 3.189287 AGGTCAAGTTCAATGTGAATCGC 59.811 43.478 0.00 0.00 38.79 4.58
2105 10483 7.829706 AGGTTGGTTCCTCATCTTATTCTTAAC 59.170 37.037 0.00 0.00 31.32 2.01
2546 12382 6.000840 TGTTTATGTTAGTTGCATGTCCAGA 58.999 36.000 0.00 0.00 0.00 3.86
2559 12395 2.754472 TGTCCAGACATGTCACTTTCG 58.246 47.619 27.02 8.24 36.21 3.46
2702 13019 1.618343 GGGGCAACACTGTATGCTTTT 59.382 47.619 14.79 0.00 42.20 2.27
2719 13036 3.068873 GCTTTTGGTGGGTGTAATGACAA 59.931 43.478 0.00 0.00 37.31 3.18
2720 13037 4.442192 GCTTTTGGTGGGTGTAATGACAAA 60.442 41.667 0.00 0.00 37.31 2.83
2763 13082 4.378774 TGTTGGCGCTGTAACTAGTTTTA 58.621 39.130 14.49 2.44 0.00 1.52
3028 13348 3.821033 GGCATCTATGGGTAACAACCATC 59.179 47.826 0.00 0.00 45.33 3.51
3221 13550 6.604396 TGACAAAGATGAATGATATTGCACCT 59.396 34.615 0.00 0.00 0.00 4.00
3373 13702 0.106708 TTGTGACTGACTGGACTGCC 59.893 55.000 0.00 0.00 0.00 4.85
3437 13775 4.537135 TGTAGTTGCCCTTCTACTCAAG 57.463 45.455 0.00 0.00 37.83 3.02
3489 13831 7.624549 ACTTTGTCCTCTATGCTTCTGAAATA 58.375 34.615 0.00 0.00 0.00 1.40
3738 14096 3.963129 TCTGTTTGTTTTCCTCACTGGT 58.037 40.909 0.00 0.00 37.07 4.00
3914 14272 2.766828 CAGAGGAGGGTAAGGGTACTTG 59.233 54.545 0.00 0.00 37.53 3.16
3992 14358 2.969821 TTACACCTTGCCCTGAACAT 57.030 45.000 0.00 0.00 0.00 2.71
4336 17245 0.387367 CCGAGGCCGATGATTAGACG 60.387 60.000 0.00 0.00 38.22 4.18
4337 17246 0.591659 CGAGGCCGATGATTAGACGA 59.408 55.000 0.00 0.00 38.22 4.20
4338 17247 1.663445 CGAGGCCGATGATTAGACGAC 60.663 57.143 0.00 0.00 38.22 4.34
4354 17263 4.872664 AGACGACTAGAACCTCTTTGTTG 58.127 43.478 0.00 0.00 0.00 3.33
4368 17277 7.147976 ACCTCTTTGTTGTGCTTAATGAAATC 58.852 34.615 0.00 0.00 0.00 2.17
4447 17365 7.654923 TCGACTATTGAATCTTTCATCATCCTG 59.345 37.037 0.00 0.00 39.84 3.86
4491 17414 4.038042 TGAGGTCTATAATGTGGAAGAGCG 59.962 45.833 0.00 0.00 40.50 5.03
4516 17442 4.384647 GGATTGAGGAGGCTGTTCAACTAT 60.385 45.833 11.23 0.00 34.04 2.12
4517 17443 4.640771 TTGAGGAGGCTGTTCAACTATT 57.359 40.909 0.00 0.00 0.00 1.73
4527 17453 5.050837 GGCTGTTCAACTATTTTGCAGTTTG 60.051 40.000 0.00 0.00 33.99 2.93
4572 17500 8.186709 TGTTTCATATACTAGTAAGTAGGCCC 57.813 38.462 6.70 0.00 41.46 5.80
4573 17501 8.008922 TGTTTCATATACTAGTAAGTAGGCCCT 58.991 37.037 6.70 0.00 41.46 5.19
4574 17502 8.305317 GTTTCATATACTAGTAAGTAGGCCCTG 58.695 40.741 6.70 0.00 41.46 4.45
4575 17503 7.100068 TCATATACTAGTAAGTAGGCCCTGT 57.900 40.000 6.70 0.00 41.46 4.00
4579 17507 1.358152 AGTAAGTAGGCCCTGTTGCA 58.642 50.000 0.00 0.00 0.00 4.08
4618 17546 5.243507 TGGTCTTGCATTTCTTGATTAGCAA 59.756 36.000 0.00 0.00 39.38 3.91
4650 17589 5.105997 GGATGTTTTGATTCTTCAGGGTCTG 60.106 44.000 0.00 0.00 32.27 3.51
4665 17604 3.573967 AGGGTCTGTTATTGCTTGGTTTG 59.426 43.478 0.00 0.00 0.00 2.93
4682 17621 6.019779 TGGTTTGGTCAAATCTTATTTCCG 57.980 37.500 8.00 0.00 32.80 4.30
4723 17664 5.536161 ACTTGCACACATTTTGAGGTCTATT 59.464 36.000 0.00 0.00 0.00 1.73
4771 17890 1.741770 CGAGTAGCCCTGTTGCACC 60.742 63.158 0.00 0.00 0.00 5.01
4875 18072 2.274760 GCATCCTGCCTGCCTCTT 59.725 61.111 0.00 0.00 37.42 2.85
4876 18073 2.119655 GCATCCTGCCTGCCTCTTG 61.120 63.158 0.00 0.00 37.42 3.02
4877 18074 1.302285 CATCCTGCCTGCCTCTTGT 59.698 57.895 0.00 0.00 0.00 3.16
4948 18145 7.452880 TTGTCATAATATGAATGCTAAGGCC 57.547 36.000 4.30 0.00 41.69 5.19
4949 18146 6.782986 TGTCATAATATGAATGCTAAGGCCT 58.217 36.000 0.00 0.00 41.69 5.19
4950 18147 7.233632 TGTCATAATATGAATGCTAAGGCCTT 58.766 34.615 24.18 24.18 41.69 4.35
4951 18148 7.175467 TGTCATAATATGAATGCTAAGGCCTTG 59.825 37.037 28.77 18.05 41.69 3.61
4952 18149 7.175641 GTCATAATATGAATGCTAAGGCCTTGT 59.824 37.037 28.77 4.97 41.69 3.16
4953 18150 7.725397 TCATAATATGAATGCTAAGGCCTTGTT 59.275 33.333 28.77 16.30 36.11 2.83
4954 18151 6.796785 AATATGAATGCTAAGGCCTTGTTT 57.203 33.333 28.77 14.97 37.74 2.83
4955 18152 3.940209 TGAATGCTAAGGCCTTGTTTG 57.060 42.857 28.77 15.43 37.74 2.93
4956 18153 2.562298 TGAATGCTAAGGCCTTGTTTGG 59.438 45.455 28.77 12.99 37.74 3.28
4957 18154 2.603075 ATGCTAAGGCCTTGTTTGGA 57.397 45.000 28.77 15.89 37.74 3.53
4958 18155 2.603075 TGCTAAGGCCTTGTTTGGAT 57.397 45.000 28.77 0.57 37.74 3.41
4959 18156 2.888212 TGCTAAGGCCTTGTTTGGATT 58.112 42.857 28.77 0.00 37.74 3.01
4960 18157 4.040936 TGCTAAGGCCTTGTTTGGATTA 57.959 40.909 28.77 3.22 37.74 1.75
4961 18158 3.761752 TGCTAAGGCCTTGTTTGGATTAC 59.238 43.478 28.77 5.34 37.74 1.89
4962 18159 3.130516 GCTAAGGCCTTGTTTGGATTACC 59.869 47.826 28.77 0.00 0.00 2.85
4963 18160 1.834188 AGGCCTTGTTTGGATTACCG 58.166 50.000 0.00 0.00 39.42 4.02
4964 18161 1.074889 AGGCCTTGTTTGGATTACCGT 59.925 47.619 0.00 0.00 39.42 4.83
4965 18162 1.890489 GGCCTTGTTTGGATTACCGTT 59.110 47.619 0.00 0.00 39.42 4.44
4966 18163 2.352323 GGCCTTGTTTGGATTACCGTTG 60.352 50.000 0.00 0.00 39.42 4.10
4967 18164 2.295070 GCCTTGTTTGGATTACCGTTGT 59.705 45.455 0.00 0.00 39.42 3.32
4968 18165 3.502979 GCCTTGTTTGGATTACCGTTGTA 59.497 43.478 0.00 0.00 39.42 2.41
4969 18166 4.379082 GCCTTGTTTGGATTACCGTTGTAG 60.379 45.833 0.00 0.00 39.42 2.74
4970 18167 4.758165 CCTTGTTTGGATTACCGTTGTAGT 59.242 41.667 0.00 0.00 39.42 2.73
4971 18168 5.239963 CCTTGTTTGGATTACCGTTGTAGTT 59.760 40.000 0.00 0.00 39.42 2.24
4972 18169 6.238814 CCTTGTTTGGATTACCGTTGTAGTTT 60.239 38.462 0.00 0.00 39.42 2.66
4973 18170 6.303021 TGTTTGGATTACCGTTGTAGTTTC 57.697 37.500 0.00 0.00 39.42 2.78
4974 18171 5.821470 TGTTTGGATTACCGTTGTAGTTTCA 59.179 36.000 0.00 0.00 39.42 2.69
4975 18172 6.017770 TGTTTGGATTACCGTTGTAGTTTCAG 60.018 38.462 0.00 0.00 39.42 3.02
4976 18173 5.471556 TGGATTACCGTTGTAGTTTCAGA 57.528 39.130 0.00 0.00 39.42 3.27
4977 18174 6.045072 TGGATTACCGTTGTAGTTTCAGAT 57.955 37.500 0.00 0.00 39.42 2.90
4978 18175 7.172868 TGGATTACCGTTGTAGTTTCAGATA 57.827 36.000 0.00 0.00 39.42 1.98
4979 18176 7.037438 TGGATTACCGTTGTAGTTTCAGATAC 58.963 38.462 0.00 0.00 39.42 2.24
4980 18177 6.478016 GGATTACCGTTGTAGTTTCAGATACC 59.522 42.308 0.00 0.00 0.00 2.73
4981 18178 6.594788 TTACCGTTGTAGTTTCAGATACCT 57.405 37.500 0.00 0.00 0.00 3.08
4982 18179 5.069501 ACCGTTGTAGTTTCAGATACCTC 57.930 43.478 0.00 0.00 0.00 3.85
4983 18180 4.771054 ACCGTTGTAGTTTCAGATACCTCT 59.229 41.667 0.00 0.00 0.00 3.69
5019 18216 4.494350 CAGACCTCTGTCCATTGTTTTG 57.506 45.455 0.00 0.00 42.81 2.44
5020 18217 3.885297 CAGACCTCTGTCCATTGTTTTGT 59.115 43.478 0.00 0.00 42.81 2.83
5021 18218 4.339247 CAGACCTCTGTCCATTGTTTTGTT 59.661 41.667 0.00 0.00 42.81 2.83
5022 18219 4.956075 AGACCTCTGTCCATTGTTTTGTTT 59.044 37.500 0.00 0.00 42.81 2.83
5023 18220 5.067805 AGACCTCTGTCCATTGTTTTGTTTC 59.932 40.000 0.00 0.00 42.81 2.78
5024 18221 4.099419 ACCTCTGTCCATTGTTTTGTTTCC 59.901 41.667 0.00 0.00 0.00 3.13
5025 18222 4.290155 CTCTGTCCATTGTTTTGTTTCCG 58.710 43.478 0.00 0.00 0.00 4.30
5026 18223 3.948473 TCTGTCCATTGTTTTGTTTCCGA 59.052 39.130 0.00 0.00 0.00 4.55
5027 18224 4.035278 TGTCCATTGTTTTGTTTCCGAC 57.965 40.909 0.00 0.00 0.00 4.79
5028 18225 3.697045 TGTCCATTGTTTTGTTTCCGACT 59.303 39.130 0.00 0.00 0.00 4.18
5029 18226 4.041723 GTCCATTGTTTTGTTTCCGACTG 58.958 43.478 0.00 0.00 0.00 3.51
5030 18227 3.948473 TCCATTGTTTTGTTTCCGACTGA 59.052 39.130 0.00 0.00 0.00 3.41
5031 18228 4.399618 TCCATTGTTTTGTTTCCGACTGAA 59.600 37.500 0.00 0.00 0.00 3.02
5032 18229 5.105716 TCCATTGTTTTGTTTCCGACTGAAA 60.106 36.000 0.00 0.00 40.64 2.69
5033 18230 5.578727 CCATTGTTTTGTTTCCGACTGAAAA 59.421 36.000 0.00 0.00 44.30 2.29
5034 18231 6.257630 CCATTGTTTTGTTTCCGACTGAAAAT 59.742 34.615 0.00 0.00 44.30 1.82
5035 18232 6.879188 TTGTTTTGTTTCCGACTGAAAATC 57.121 33.333 0.00 0.00 44.30 2.17
5036 18233 6.202516 TGTTTTGTTTCCGACTGAAAATCT 57.797 33.333 0.00 0.00 44.30 2.40
5037 18234 6.033341 TGTTTTGTTTCCGACTGAAAATCTG 58.967 36.000 0.00 0.00 44.30 2.90
5038 18235 3.896648 TGTTTCCGACTGAAAATCTGC 57.103 42.857 0.00 0.00 44.30 4.26
5039 18236 3.476552 TGTTTCCGACTGAAAATCTGCT 58.523 40.909 0.00 0.00 44.30 4.24
5040 18237 4.637276 TGTTTCCGACTGAAAATCTGCTA 58.363 39.130 0.00 0.00 44.30 3.49
5041 18238 4.690748 TGTTTCCGACTGAAAATCTGCTAG 59.309 41.667 0.00 0.00 44.30 3.42
5042 18239 4.537135 TTCCGACTGAAAATCTGCTAGT 57.463 40.909 0.00 0.00 0.00 2.57
5043 18240 3.849911 TCCGACTGAAAATCTGCTAGTG 58.150 45.455 0.00 0.00 0.00 2.74
5044 18241 2.932614 CCGACTGAAAATCTGCTAGTGG 59.067 50.000 0.00 0.00 0.00 4.00
5045 18242 2.349886 CGACTGAAAATCTGCTAGTGGC 59.650 50.000 0.00 0.00 42.22 5.01
5046 18243 2.680339 GACTGAAAATCTGCTAGTGGCC 59.320 50.000 0.00 0.00 40.92 5.36
5047 18244 1.667724 CTGAAAATCTGCTAGTGGCCG 59.332 52.381 0.00 0.00 40.92 6.13
5048 18245 1.017387 GAAAATCTGCTAGTGGCCGG 58.983 55.000 0.00 0.00 40.92 6.13
5049 18246 0.328258 AAAATCTGCTAGTGGCCGGT 59.672 50.000 1.90 0.00 40.92 5.28
5050 18247 1.200519 AAATCTGCTAGTGGCCGGTA 58.799 50.000 1.90 0.00 40.92 4.02
5051 18248 1.200519 AATCTGCTAGTGGCCGGTAA 58.799 50.000 1.90 0.00 40.92 2.85
5052 18249 0.753262 ATCTGCTAGTGGCCGGTAAG 59.247 55.000 1.90 0.00 40.92 2.34
5053 18250 0.613853 TCTGCTAGTGGCCGGTAAGT 60.614 55.000 1.90 0.00 40.92 2.24
5054 18251 0.249398 CTGCTAGTGGCCGGTAAGTT 59.751 55.000 1.90 0.00 40.92 2.66
5055 18252 1.479323 CTGCTAGTGGCCGGTAAGTTA 59.521 52.381 1.90 0.00 40.92 2.24
5056 18253 1.205417 TGCTAGTGGCCGGTAAGTTAC 59.795 52.381 1.90 4.32 40.92 2.50
5057 18254 1.479730 GCTAGTGGCCGGTAAGTTACT 59.520 52.381 12.65 0.00 34.27 2.24
5058 18255 2.480932 GCTAGTGGCCGGTAAGTTACTC 60.481 54.545 12.65 2.75 34.27 2.59
5059 18256 0.529378 AGTGGCCGGTAAGTTACTCG 59.471 55.000 12.65 13.24 0.00 4.18
5060 18257 0.244721 GTGGCCGGTAAGTTACTCGT 59.755 55.000 12.65 0.00 0.00 4.18
5061 18258 0.244450 TGGCCGGTAAGTTACTCGTG 59.756 55.000 12.65 9.38 0.00 4.35
5062 18259 0.244721 GGCCGGTAAGTTACTCGTGT 59.755 55.000 12.65 0.00 0.00 4.49
5063 18260 1.472480 GGCCGGTAAGTTACTCGTGTA 59.528 52.381 12.65 0.00 0.00 2.90
5064 18261 2.094752 GGCCGGTAAGTTACTCGTGTAA 60.095 50.000 12.65 5.99 36.41 2.41
5065 18262 3.574614 GCCGGTAAGTTACTCGTGTAAA 58.425 45.455 11.36 0.00 39.96 2.01
5066 18263 4.176271 GCCGGTAAGTTACTCGTGTAAAT 58.824 43.478 11.36 7.99 39.96 1.40
5067 18264 5.339990 GCCGGTAAGTTACTCGTGTAAATA 58.660 41.667 11.36 6.00 39.96 1.40
5068 18265 5.804979 GCCGGTAAGTTACTCGTGTAAATAA 59.195 40.000 11.36 0.00 39.96 1.40
5069 18266 6.310224 GCCGGTAAGTTACTCGTGTAAATAAA 59.690 38.462 11.36 1.10 39.96 1.40
5070 18267 7.148656 GCCGGTAAGTTACTCGTGTAAATAAAA 60.149 37.037 11.36 0.00 39.96 1.52
5071 18268 8.872845 CCGGTAAGTTACTCGTGTAAATAAAAT 58.127 33.333 11.36 0.00 39.96 1.82
5092 18289 8.756486 AAAATAAATAATAGTGGCCGGTAAGT 57.244 30.769 1.90 0.00 0.00 2.24
5093 18290 8.756486 AAATAAATAATAGTGGCCGGTAAGTT 57.244 30.769 1.90 0.00 0.00 2.66
5094 18291 9.850198 AAATAAATAATAGTGGCCGGTAAGTTA 57.150 29.630 1.90 0.00 0.00 2.24
5095 18292 8.837788 ATAAATAATAGTGGCCGGTAAGTTAC 57.162 34.615 1.90 4.32 0.00 2.50
5096 18293 6.490241 AATAATAGTGGCCGGTAAGTTACT 57.510 37.500 12.65 0.00 0.00 2.24
5097 18294 4.397481 AATAGTGGCCGGTAAGTTACTC 57.603 45.455 12.65 2.75 0.00 2.59
5098 18295 0.529378 AGTGGCCGGTAAGTTACTCG 59.471 55.000 12.65 13.24 0.00 4.18
5099 18296 0.244721 GTGGCCGGTAAGTTACTCGT 59.755 55.000 12.65 0.00 0.00 4.18
5100 18297 0.244450 TGGCCGGTAAGTTACTCGTG 59.756 55.000 12.65 9.38 0.00 4.35
5101 18298 0.244721 GGCCGGTAAGTTACTCGTGT 59.755 55.000 12.65 0.00 0.00 4.49
5102 18299 1.472480 GGCCGGTAAGTTACTCGTGTA 59.528 52.381 12.65 0.00 0.00 2.90
5103 18300 2.094752 GGCCGGTAAGTTACTCGTGTAA 60.095 50.000 12.65 5.99 36.41 2.41
5104 18301 3.574614 GCCGGTAAGTTACTCGTGTAAA 58.425 45.455 11.36 0.00 39.96 2.01
5105 18302 3.987220 GCCGGTAAGTTACTCGTGTAAAA 59.013 43.478 11.36 0.00 39.96 1.52
5106 18303 4.627035 GCCGGTAAGTTACTCGTGTAAAAT 59.373 41.667 11.36 6.54 39.96 1.82
5107 18304 5.804979 GCCGGTAAGTTACTCGTGTAAAATA 59.195 40.000 11.36 5.69 39.96 1.40
5108 18305 6.310224 GCCGGTAAGTTACTCGTGTAAAATAA 59.690 38.462 11.36 0.00 39.96 1.40
5109 18306 7.148656 GCCGGTAAGTTACTCGTGTAAAATAAA 60.149 37.037 11.36 0.00 39.96 1.40
5110 18307 8.872845 CCGGTAAGTTACTCGTGTAAAATAAAT 58.127 33.333 11.36 0.00 39.96 1.40
5116 18313 9.846248 AGTTACTCGTGTAAAATAAATACGTCT 57.154 29.630 11.36 0.00 39.96 4.18
5117 18314 9.877096 GTTACTCGTGTAAAATAAATACGTCTG 57.123 33.333 11.36 0.00 39.96 3.51
5118 18315 9.624697 TTACTCGTGTAAAATAAATACGTCTGT 57.375 29.630 7.58 0.00 35.90 3.41
5120 18317 9.793252 ACTCGTGTAAAATAAATACGTCTGTAT 57.207 29.630 0.00 0.00 43.14 2.29
5134 18331 9.817809 AATACGTCTGTATTTGATTACACTGAT 57.182 29.630 0.00 0.00 46.61 2.90
5135 18332 9.817809 ATACGTCTGTATTTGATTACACTGATT 57.182 29.630 0.00 0.00 38.10 2.57
5136 18333 8.186178 ACGTCTGTATTTGATTACACTGATTC 57.814 34.615 0.00 0.00 0.00 2.52
5137 18334 7.277981 ACGTCTGTATTTGATTACACTGATTCC 59.722 37.037 0.00 0.00 0.00 3.01
5138 18335 7.277760 CGTCTGTATTTGATTACACTGATTCCA 59.722 37.037 0.00 0.00 0.00 3.53
5139 18336 8.946085 GTCTGTATTTGATTACACTGATTCCAA 58.054 33.333 0.00 0.00 0.00 3.53
5140 18337 9.166173 TCTGTATTTGATTACACTGATTCCAAG 57.834 33.333 0.00 0.00 0.00 3.61
5141 18338 7.761409 TGTATTTGATTACACTGATTCCAAGC 58.239 34.615 0.00 0.00 0.00 4.01
5142 18339 4.944962 TTGATTACACTGATTCCAAGCG 57.055 40.909 0.00 0.00 0.00 4.68
5143 18340 2.677836 TGATTACACTGATTCCAAGCGC 59.322 45.455 0.00 0.00 0.00 5.92
5144 18341 1.075542 TTACACTGATTCCAAGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
5145 18342 0.739462 TACACTGATTCCAAGCGCGG 60.739 55.000 8.83 0.00 0.00 6.46
5146 18343 3.127533 ACTGATTCCAAGCGCGGC 61.128 61.111 8.83 0.00 0.00 6.53
5147 18344 3.880846 CTGATTCCAAGCGCGGCC 61.881 66.667 8.83 0.00 0.00 6.13
5184 18381 6.862209 AGTTACAAAATCACTTGAGTTGCAA 58.138 32.000 0.00 0.00 32.24 4.08
5202 18399 2.673368 GCAAAGGTAATCGACTGAGTGG 59.327 50.000 0.00 0.00 0.00 4.00
5231 18429 0.105964 TGCTGTTGGTTGCCCCTTTA 60.106 50.000 0.00 0.00 0.00 1.85
5288 18486 2.035066 ACTGAAATGCTGTGTTTGCTCC 59.965 45.455 0.00 0.00 0.00 4.70
5312 18510 2.757314 CTGCCTTTTCTCCATTCCTTCC 59.243 50.000 0.00 0.00 0.00 3.46
5313 18511 2.379907 TGCCTTTTCTCCATTCCTTCCT 59.620 45.455 0.00 0.00 0.00 3.36
5314 18512 3.181418 TGCCTTTTCTCCATTCCTTCCTT 60.181 43.478 0.00 0.00 0.00 3.36
5315 18513 3.445450 GCCTTTTCTCCATTCCTTCCTTC 59.555 47.826 0.00 0.00 0.00 3.46
5329 18527 2.814280 TCCTTCTTGACACCGTCTTC 57.186 50.000 0.00 0.00 33.15 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.874345 TTTCCGTCCTCTCTCCGCAC 61.874 60.000 0.00 0.00 0.00 5.34
31 32 2.271800 CAATTTTCCGTCCTCTCTCCG 58.728 52.381 0.00 0.00 0.00 4.63
42 43 0.246360 GCTTGGGTCCCAATTTTCCG 59.754 55.000 24.03 12.00 43.07 4.30
43 44 1.347062 TGCTTGGGTCCCAATTTTCC 58.653 50.000 24.03 10.37 43.07 3.13
73 75 2.563179 ACCTTACGTCAGAGAAGTGCAT 59.437 45.455 0.00 0.00 0.00 3.96
76 78 5.154932 CAACTACCTTACGTCAGAGAAGTG 58.845 45.833 0.00 0.00 0.00 3.16
85 87 5.961263 CACACAAAAACAACTACCTTACGTC 59.039 40.000 0.00 0.00 0.00 4.34
89 91 7.925043 TTCTCACACAAAAACAACTACCTTA 57.075 32.000 0.00 0.00 0.00 2.69
102 105 6.128007 GGTCTCTCAAACTTTTCTCACACAAA 60.128 38.462 0.00 0.00 0.00 2.83
119 122 3.002583 TGCCATGCCGGTCTCTCA 61.003 61.111 1.90 0.00 36.97 3.27
121 124 2.596851 AACTGCCATGCCGGTCTCT 61.597 57.895 1.90 0.00 36.97 3.10
245 248 7.940137 TCAAAACAGTTAATTTAGCCTCTACCA 59.060 33.333 0.00 0.00 0.00 3.25
246 249 8.235226 GTCAAAACAGTTAATTTAGCCTCTACC 58.765 37.037 0.00 0.00 0.00 3.18
287 290 5.838531 ACAAACGGGTCAAATTGTCTTAA 57.161 34.783 0.00 0.00 30.58 1.85
291 294 4.823790 AGTACAAACGGGTCAAATTGTC 57.176 40.909 0.00 0.00 37.25 3.18
318 322 3.202906 GCGACAGTAAAATGGCCAGATA 58.797 45.455 13.05 0.59 0.00 1.98
379 384 5.593010 CGGAAGAAACAATAACCCAACAAA 58.407 37.500 0.00 0.00 0.00 2.83
382 387 3.004944 TGCGGAAGAAACAATAACCCAAC 59.995 43.478 0.00 0.00 0.00 3.77
394 399 1.021202 CAACCACACTGCGGAAGAAA 58.979 50.000 0.00 0.00 0.00 2.52
399 404 2.063015 AATCCCAACCACACTGCGGA 62.063 55.000 0.00 0.00 0.00 5.54
414 420 6.697641 TCACCCTTATACTTATGGGAATCC 57.302 41.667 10.11 0.00 42.80 3.01
422 428 6.239629 GGCTGCTACTTCACCCTTATACTTAT 60.240 42.308 0.00 0.00 0.00 1.73
427 433 2.704065 GGGCTGCTACTTCACCCTTATA 59.296 50.000 0.00 0.00 37.59 0.98
428 434 1.490910 GGGCTGCTACTTCACCCTTAT 59.509 52.381 0.00 0.00 37.59 1.73
429 435 0.909623 GGGCTGCTACTTCACCCTTA 59.090 55.000 0.00 0.00 37.59 2.69
430 436 1.133809 TGGGCTGCTACTTCACCCTT 61.134 55.000 0.00 0.00 41.44 3.95
433 439 0.253044 TGATGGGCTGCTACTTCACC 59.747 55.000 0.00 0.00 0.00 4.02
434 440 1.740025 GTTGATGGGCTGCTACTTCAC 59.260 52.381 0.00 0.34 0.00 3.18
437 443 2.224867 ACTTGTTGATGGGCTGCTACTT 60.225 45.455 0.00 0.00 0.00 2.24
438 444 1.352352 ACTTGTTGATGGGCTGCTACT 59.648 47.619 0.00 0.00 0.00 2.57
439 445 1.826385 ACTTGTTGATGGGCTGCTAC 58.174 50.000 0.00 0.00 0.00 3.58
440 446 3.931907 ATACTTGTTGATGGGCTGCTA 57.068 42.857 0.00 0.00 0.00 3.49
441 447 2.814805 ATACTTGTTGATGGGCTGCT 57.185 45.000 0.00 0.00 0.00 4.24
442 448 3.056607 ACAAATACTTGTTGATGGGCTGC 60.057 43.478 0.00 0.00 43.45 5.25
444 450 4.666512 AGACAAATACTTGTTGATGGGCT 58.333 39.130 0.00 0.00 45.98 5.19
445 451 4.458989 TGAGACAAATACTTGTTGATGGGC 59.541 41.667 0.00 0.00 45.98 5.36
446 452 5.392380 GCTGAGACAAATACTTGTTGATGGG 60.392 44.000 0.00 0.00 45.98 4.00
447 453 5.413833 AGCTGAGACAAATACTTGTTGATGG 59.586 40.000 0.00 0.00 45.98 3.51
448 454 6.492007 AGCTGAGACAAATACTTGTTGATG 57.508 37.500 0.00 0.00 45.98 3.07
449 455 6.820656 CCTAGCTGAGACAAATACTTGTTGAT 59.179 38.462 0.00 0.00 45.98 2.57
450 456 6.014584 TCCTAGCTGAGACAAATACTTGTTGA 60.015 38.462 0.00 0.00 45.98 3.18
454 460 7.044181 TGATTCCTAGCTGAGACAAATACTTG 58.956 38.462 0.00 0.00 38.61 3.16
455 461 7.187824 TGATTCCTAGCTGAGACAAATACTT 57.812 36.000 0.00 0.00 0.00 2.24
463 878 5.669477 ACAATCTTGATTCCTAGCTGAGAC 58.331 41.667 0.00 0.00 0.00 3.36
470 885 9.605275 TTCTGTATTGACAATCTTGATTCCTAG 57.395 33.333 3.36 0.00 34.35 3.02
477 892 6.455647 ACTCGTTCTGTATTGACAATCTTGA 58.544 36.000 3.36 0.00 34.35 3.02
482 897 4.929808 GGTGACTCGTTCTGTATTGACAAT 59.070 41.667 5.87 5.87 34.35 2.71
495 910 4.939439 ACTTTGTTTGTTAGGTGACTCGTT 59.061 37.500 0.00 0.00 43.67 3.85
497 912 4.785341 GCACTTTGTTTGTTAGGTGACTCG 60.785 45.833 0.00 0.00 43.67 4.18
531 946 1.199852 GGACAAGCGTGTTTTGTGCG 61.200 55.000 6.76 0.00 38.78 5.34
556 971 0.475906 AGGGGCTACAATCCTGATGC 59.524 55.000 0.00 0.00 0.00 3.91
569 984 1.889530 GACTAGCACGACAAGGGGCT 61.890 60.000 0.00 0.00 38.06 5.19
570 985 1.448013 GACTAGCACGACAAGGGGC 60.448 63.158 0.00 0.00 0.00 5.80
571 986 0.389948 GTGACTAGCACGACAAGGGG 60.390 60.000 0.00 0.00 37.83 4.79
612 1029 8.086851 TCTGTTATTGTTACCGTTTTACCTTC 57.913 34.615 0.00 0.00 0.00 3.46
630 1073 4.710375 ACACGATACACCCTTCTCTGTTAT 59.290 41.667 0.00 0.00 0.00 1.89
742 1185 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
743 1186 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
755 1198 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
756 1199 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
757 1200 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
758 1201 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
759 1202 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
760 1203 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
761 1204 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
762 1205 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
763 1206 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
764 1207 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
765 1208 9.512588 TCTACTCCCTCCGTAAACTAATATAAG 57.487 37.037 0.00 0.00 0.00 1.73
767 1210 9.458727 CATCTACTCCCTCCGTAAACTAATATA 57.541 37.037 0.00 0.00 0.00 0.86
768 1211 7.949006 ACATCTACTCCCTCCGTAAACTAATAT 59.051 37.037 0.00 0.00 0.00 1.28
769 1212 7.293073 ACATCTACTCCCTCCGTAAACTAATA 58.707 38.462 0.00 0.00 0.00 0.98
770 1213 6.134754 ACATCTACTCCCTCCGTAAACTAAT 58.865 40.000 0.00 0.00 0.00 1.73
771 1214 5.513233 ACATCTACTCCCTCCGTAAACTAA 58.487 41.667 0.00 0.00 0.00 2.24
772 1215 5.121380 ACATCTACTCCCTCCGTAAACTA 57.879 43.478 0.00 0.00 0.00 2.24
773 1216 3.978610 ACATCTACTCCCTCCGTAAACT 58.021 45.455 0.00 0.00 0.00 2.66
774 1217 4.732672 AACATCTACTCCCTCCGTAAAC 57.267 45.455 0.00 0.00 0.00 2.01
775 1218 5.759059 TCTAACATCTACTCCCTCCGTAAA 58.241 41.667 0.00 0.00 0.00 2.01
776 1219 5.378230 TCTAACATCTACTCCCTCCGTAA 57.622 43.478 0.00 0.00 0.00 3.18
777 1220 5.378230 TTCTAACATCTACTCCCTCCGTA 57.622 43.478 0.00 0.00 0.00 4.02
778 1221 3.947612 TCTAACATCTACTCCCTCCGT 57.052 47.619 0.00 0.00 0.00 4.69
779 1222 5.106078 GCTATTCTAACATCTACTCCCTCCG 60.106 48.000 0.00 0.00 0.00 4.63
780 1223 5.106078 CGCTATTCTAACATCTACTCCCTCC 60.106 48.000 0.00 0.00 0.00 4.30
781 1224 5.706369 TCGCTATTCTAACATCTACTCCCTC 59.294 44.000 0.00 0.00 0.00 4.30
782 1225 5.632118 TCGCTATTCTAACATCTACTCCCT 58.368 41.667 0.00 0.00 0.00 4.20
783 1226 5.961396 TCGCTATTCTAACATCTACTCCC 57.039 43.478 0.00 0.00 0.00 4.30
784 1227 6.864165 CCTTTCGCTATTCTAACATCTACTCC 59.136 42.308 0.00 0.00 0.00 3.85
785 1228 7.649973 TCCTTTCGCTATTCTAACATCTACTC 58.350 38.462 0.00 0.00 0.00 2.59
786 1229 7.255660 CCTCCTTTCGCTATTCTAACATCTACT 60.256 40.741 0.00 0.00 0.00 2.57
787 1230 6.864165 CCTCCTTTCGCTATTCTAACATCTAC 59.136 42.308 0.00 0.00 0.00 2.59
788 1231 6.015350 CCCTCCTTTCGCTATTCTAACATCTA 60.015 42.308 0.00 0.00 0.00 1.98
789 1232 5.221541 CCCTCCTTTCGCTATTCTAACATCT 60.222 44.000 0.00 0.00 0.00 2.90
790 1233 4.991687 CCCTCCTTTCGCTATTCTAACATC 59.008 45.833 0.00 0.00 0.00 3.06
798 1241 2.436173 CTCTTCCCCTCCTTTCGCTATT 59.564 50.000 0.00 0.00 0.00 1.73
804 1247 4.013050 CACAATTCTCTTCCCCTCCTTTC 58.987 47.826 0.00 0.00 0.00 2.62
830 1273 3.341043 CGATTGGATCAGCGCCGG 61.341 66.667 2.29 0.00 0.00 6.13
835 1278 1.643832 GCCGTTCGATTGGATCAGC 59.356 57.895 7.58 0.00 0.00 4.26
848 1291 2.852075 TGGGAAGTCTGGGCCGTT 60.852 61.111 0.00 0.00 0.00 4.44
1408 2712 2.187946 GCCTCGGTGATGTGGGAG 59.812 66.667 0.00 0.00 0.00 4.30
1538 2842 7.724305 TGTAAAACATGGAAACTAGACAGAC 57.276 36.000 0.00 0.00 0.00 3.51
1540 2844 8.567948 ACAATGTAAAACATGGAAACTAGACAG 58.432 33.333 0.00 0.00 37.97 3.51
1567 2914 6.816640 TCTGACAGTTGAATCTTTATTACGGG 59.183 38.462 1.59 0.00 0.00 5.28
1574 2921 5.939883 CCCATGTCTGACAGTTGAATCTTTA 59.060 40.000 16.46 0.00 0.00 1.85
1575 2922 4.763793 CCCATGTCTGACAGTTGAATCTTT 59.236 41.667 16.46 0.00 0.00 2.52
1576 2923 4.202503 ACCCATGTCTGACAGTTGAATCTT 60.203 41.667 16.46 0.00 0.00 2.40
1582 2929 1.270305 ACGACCCATGTCTGACAGTTG 60.270 52.381 16.46 13.89 39.47 3.16
1591 2938 2.000447 GACAGCTTTACGACCCATGTC 59.000 52.381 0.00 0.00 38.18 3.06
1625 2972 2.353011 GGCCAGACCACAATGTGATTTG 60.353 50.000 15.91 2.65 38.86 2.32
1646 2993 0.038166 ATACACCAGCCACAACCCAG 59.962 55.000 0.00 0.00 0.00 4.45
1725 3197 5.268544 CCGACTTGATGCAAAATCATACTG 58.731 41.667 0.00 0.00 0.00 2.74
1726 3198 4.201950 GCCGACTTGATGCAAAATCATACT 60.202 41.667 0.00 0.00 0.00 2.12
1749 3221 2.673368 GGTAATTGTCCAACTCTCTGCG 59.327 50.000 0.00 0.00 0.00 5.18
1831 3483 7.397892 TGAAACCAATTTGTGAAACTACAGA 57.602 32.000 0.00 0.00 38.04 3.41
1835 3487 7.786030 TGGAATGAAACCAATTTGTGAAACTA 58.214 30.769 0.00 0.00 33.94 2.24
1854 3538 3.128242 GGAACAAGAGCAGTGATGGAATG 59.872 47.826 0.00 0.00 0.00 2.67
1949 3641 1.834263 CTATAGCTATGCCCCAGACCC 59.166 57.143 16.77 0.00 0.00 4.46
2000 3692 4.496341 GCTTGAATCACCATGTTATCCACG 60.496 45.833 0.00 0.00 0.00 4.94
2198 10578 5.476091 ACCTAGAACTTTCTCAGGACTTG 57.524 43.478 15.66 0.00 38.70 3.16
2337 10727 5.147162 CAAAAGAAGAGGCATACAAACGAC 58.853 41.667 0.00 0.00 0.00 4.34
2455 12285 5.412594 AGACTCACAATACGCAATTGAATGT 59.587 36.000 10.34 6.64 46.81 2.71
2546 12382 2.224426 TGTAAGCCCGAAAGTGACATGT 60.224 45.455 0.00 0.00 0.00 3.21
2549 12385 1.414919 ACTGTAAGCCCGAAAGTGACA 59.585 47.619 0.00 0.00 37.60 3.58
2556 12392 2.416296 CGTATGTCACTGTAAGCCCGAA 60.416 50.000 0.00 0.00 37.60 4.30
2559 12395 2.268298 CACGTATGTCACTGTAAGCCC 58.732 52.381 0.00 0.00 37.60 5.19
2686 12999 3.552684 CCCACCAAAAGCATACAGTGTTG 60.553 47.826 0.00 0.95 0.00 3.33
2702 13019 5.144100 AGAAATTTGTCATTACACCCACCA 58.856 37.500 0.00 0.00 34.61 4.17
2720 13037 9.173021 CCAACAAGGGTAAAAAGAAAAAGAAAT 57.827 29.630 0.00 0.00 0.00 2.17
2763 13082 6.509418 ACACAACTACAGTGACAAATGTTT 57.491 33.333 0.00 0.00 40.16 2.83
3221 13550 5.729510 TCACCAATCAATGACGTCAGATTA 58.270 37.500 24.41 12.25 0.00 1.75
3373 13702 3.795688 ATAGGGTGTGGGAATGCATAG 57.204 47.619 0.00 0.00 0.00 2.23
3437 13775 8.511465 TGAATACTTGACGAAACAGTTAGTAC 57.489 34.615 0.00 0.00 30.22 2.73
3489 13831 9.801873 CGGTAAAATTAGGAAATCAATCACAAT 57.198 29.630 0.00 0.00 0.00 2.71
3546 13895 4.978099 AGTGGAATATGAGGCCATACTTG 58.022 43.478 5.01 0.00 38.02 3.16
3738 14096 9.935241 GAGCTACTCATATCTGGAATTCATAAA 57.065 33.333 7.93 0.00 0.00 1.40
3992 14358 5.643777 CCTTCTCCTTATCTGCGAAAAGAAA 59.356 40.000 0.00 0.00 0.00 2.52
4336 17245 4.381411 AGCACAACAAAGAGGTTCTAGTC 58.619 43.478 0.00 0.00 0.00 2.59
4337 17246 4.423625 AGCACAACAAAGAGGTTCTAGT 57.576 40.909 0.00 0.00 0.00 2.57
4338 17247 6.861065 TTAAGCACAACAAAGAGGTTCTAG 57.139 37.500 0.00 0.00 0.00 2.43
4381 17293 8.845227 CCATGGTTGCACATAAATTATACAGTA 58.155 33.333 2.57 0.00 0.00 2.74
4382 17294 7.559533 TCCATGGTTGCACATAAATTATACAGT 59.440 33.333 12.58 0.00 0.00 3.55
4398 17311 1.308998 CCGATTAGGTCCATGGTTGC 58.691 55.000 12.58 3.42 34.51 4.17
4491 17414 1.003580 TGAACAGCCTCCTCAATCCAC 59.996 52.381 0.00 0.00 0.00 4.02
4516 17442 3.540314 AACATGCTCCAAACTGCAAAA 57.460 38.095 0.00 0.00 42.74 2.44
4517 17443 3.540314 AAACATGCTCCAAACTGCAAA 57.460 38.095 0.00 0.00 42.74 3.68
4569 17497 1.003355 TCTAGTGCTGCAACAGGGC 60.003 57.895 2.77 0.00 31.21 5.19
4572 17500 3.584406 ACTACTCTAGTGCTGCAACAG 57.416 47.619 2.77 4.55 37.69 3.16
4573 17501 4.058124 CAAACTACTCTAGTGCTGCAACA 58.942 43.478 2.77 0.00 39.39 3.33
4574 17502 3.433615 CCAAACTACTCTAGTGCTGCAAC 59.566 47.826 2.77 0.00 39.39 4.17
4575 17503 3.071023 ACCAAACTACTCTAGTGCTGCAA 59.929 43.478 2.77 0.00 39.39 4.08
4579 17507 4.561734 GCAAGACCAAACTACTCTAGTGCT 60.562 45.833 0.00 0.00 39.39 4.40
4618 17546 4.154942 AGAATCAAAACATCCCAAGTGCT 58.845 39.130 0.00 0.00 0.00 4.40
4619 17547 4.525912 AGAATCAAAACATCCCAAGTGC 57.474 40.909 0.00 0.00 0.00 4.40
4620 17548 6.088016 TGAAGAATCAAAACATCCCAAGTG 57.912 37.500 0.00 0.00 30.99 3.16
4621 17549 5.244626 CCTGAAGAATCAAAACATCCCAAGT 59.755 40.000 0.00 0.00 34.49 3.16
4650 17589 6.223120 AGATTTGACCAAACCAAGCAATAAC 58.777 36.000 0.00 0.00 32.51 1.89
4665 17604 9.717892 GAAATAACTCGGAAATAAGATTTGACC 57.282 33.333 0.00 0.00 0.00 4.02
4682 17621 5.215239 GCAAGTGCAGAGAGAAATAACTC 57.785 43.478 0.00 0.00 41.59 3.01
4723 17664 4.374689 ACAGGCTCCTCGATTCTAGATA 57.625 45.455 0.00 0.00 0.00 1.98
4809 17929 3.077359 GCTCAAGGCAACAGTAATGTCT 58.923 45.455 0.00 0.00 41.35 3.41
4869 18066 0.404426 ACCCCTAACCAACAAGAGGC 59.596 55.000 0.00 0.00 0.00 4.70
4870 18067 2.971901 AACCCCTAACCAACAAGAGG 57.028 50.000 0.00 0.00 0.00 3.69
4872 18069 3.975312 TGAGTAACCCCTAACCAACAAGA 59.025 43.478 0.00 0.00 0.00 3.02
4873 18070 4.360951 TGAGTAACCCCTAACCAACAAG 57.639 45.455 0.00 0.00 0.00 3.16
4874 18071 4.351407 TCATGAGTAACCCCTAACCAACAA 59.649 41.667 0.00 0.00 0.00 2.83
4875 18072 3.911260 TCATGAGTAACCCCTAACCAACA 59.089 43.478 0.00 0.00 0.00 3.33
4876 18073 4.563140 TCATGAGTAACCCCTAACCAAC 57.437 45.455 0.00 0.00 0.00 3.77
4877 18074 5.014755 ACAATCATGAGTAACCCCTAACCAA 59.985 40.000 0.09 0.00 0.00 3.67
4942 18139 3.244981 ACGGTAATCCAAACAAGGCCTTA 60.245 43.478 20.00 0.74 0.00 2.69
4943 18140 2.167662 CGGTAATCCAAACAAGGCCTT 58.832 47.619 13.78 13.78 0.00 4.35
4944 18141 1.074889 ACGGTAATCCAAACAAGGCCT 59.925 47.619 0.00 0.00 0.00 5.19
4945 18142 1.541379 ACGGTAATCCAAACAAGGCC 58.459 50.000 0.00 0.00 0.00 5.19
4946 18143 2.295070 ACAACGGTAATCCAAACAAGGC 59.705 45.455 0.00 0.00 0.00 4.35
4947 18144 4.758165 ACTACAACGGTAATCCAAACAAGG 59.242 41.667 0.00 0.00 0.00 3.61
4948 18145 5.934935 ACTACAACGGTAATCCAAACAAG 57.065 39.130 0.00 0.00 0.00 3.16
4949 18146 6.318144 TGAAACTACAACGGTAATCCAAACAA 59.682 34.615 0.00 0.00 0.00 2.83
4950 18147 5.821470 TGAAACTACAACGGTAATCCAAACA 59.179 36.000 0.00 0.00 0.00 2.83
4951 18148 6.203338 TCTGAAACTACAACGGTAATCCAAAC 59.797 38.462 0.00 0.00 0.00 2.93
4952 18149 6.289834 TCTGAAACTACAACGGTAATCCAAA 58.710 36.000 0.00 0.00 0.00 3.28
4953 18150 5.856156 TCTGAAACTACAACGGTAATCCAA 58.144 37.500 0.00 0.00 0.00 3.53
4954 18151 5.471556 TCTGAAACTACAACGGTAATCCA 57.528 39.130 0.00 0.00 0.00 3.41
4955 18152 6.478016 GGTATCTGAAACTACAACGGTAATCC 59.522 42.308 0.00 0.00 0.00 3.01
4956 18153 7.263496 AGGTATCTGAAACTACAACGGTAATC 58.737 38.462 0.00 0.00 0.00 1.75
4957 18154 7.123847 AGAGGTATCTGAAACTACAACGGTAAT 59.876 37.037 0.00 0.00 33.30 1.89
4958 18155 6.435277 AGAGGTATCTGAAACTACAACGGTAA 59.565 38.462 0.00 0.00 33.30 2.85
4959 18156 5.948162 AGAGGTATCTGAAACTACAACGGTA 59.052 40.000 0.00 0.00 33.30 4.02
4960 18157 4.771054 AGAGGTATCTGAAACTACAACGGT 59.229 41.667 0.00 0.00 33.30 4.83
4961 18158 5.326200 AGAGGTATCTGAAACTACAACGG 57.674 43.478 0.00 0.00 33.30 4.44
4999 18196 4.170468 ACAAAACAATGGACAGAGGTCT 57.830 40.909 0.00 0.00 43.77 3.85
5000 18197 4.918810 AACAAAACAATGGACAGAGGTC 57.081 40.909 0.00 0.00 43.55 3.85
5001 18198 4.099419 GGAAACAAAACAATGGACAGAGGT 59.901 41.667 0.00 0.00 0.00 3.85
5002 18199 4.620982 GGAAACAAAACAATGGACAGAGG 58.379 43.478 0.00 0.00 0.00 3.69
5003 18200 4.036262 TCGGAAACAAAACAATGGACAGAG 59.964 41.667 0.00 0.00 0.00 3.35
5004 18201 3.948473 TCGGAAACAAAACAATGGACAGA 59.052 39.130 0.00 0.00 0.00 3.41
5005 18202 4.041723 GTCGGAAACAAAACAATGGACAG 58.958 43.478 0.00 0.00 0.00 3.51
5006 18203 3.697045 AGTCGGAAACAAAACAATGGACA 59.303 39.130 0.00 0.00 0.00 4.02
5007 18204 4.041723 CAGTCGGAAACAAAACAATGGAC 58.958 43.478 0.00 0.00 0.00 4.02
5008 18205 3.948473 TCAGTCGGAAACAAAACAATGGA 59.052 39.130 0.00 0.00 0.00 3.41
5009 18206 4.300189 TCAGTCGGAAACAAAACAATGG 57.700 40.909 0.00 0.00 0.00 3.16
5010 18207 6.639671 TTTTCAGTCGGAAACAAAACAATG 57.360 33.333 0.00 0.00 44.89 2.82
5011 18208 7.222611 CAGATTTTCAGTCGGAAACAAAACAAT 59.777 33.333 0.00 0.00 44.89 2.71
5012 18209 6.529829 CAGATTTTCAGTCGGAAACAAAACAA 59.470 34.615 0.00 0.00 44.89 2.83
5013 18210 6.033341 CAGATTTTCAGTCGGAAACAAAACA 58.967 36.000 0.00 0.00 44.89 2.83
5014 18211 5.051708 GCAGATTTTCAGTCGGAAACAAAAC 60.052 40.000 0.00 0.00 44.89 2.43
5015 18212 5.040635 GCAGATTTTCAGTCGGAAACAAAA 58.959 37.500 0.00 0.00 44.89 2.44
5016 18213 4.338118 AGCAGATTTTCAGTCGGAAACAAA 59.662 37.500 0.00 0.00 44.89 2.83
5017 18214 3.882888 AGCAGATTTTCAGTCGGAAACAA 59.117 39.130 0.00 0.00 44.89 2.83
5018 18215 3.476552 AGCAGATTTTCAGTCGGAAACA 58.523 40.909 0.00 0.00 44.89 2.83
5019 18216 4.691216 ACTAGCAGATTTTCAGTCGGAAAC 59.309 41.667 0.00 0.00 44.89 2.78
5020 18217 4.690748 CACTAGCAGATTTTCAGTCGGAAA 59.309 41.667 0.00 0.00 43.59 3.13
5021 18218 4.245660 CACTAGCAGATTTTCAGTCGGAA 58.754 43.478 0.00 0.00 0.00 4.30
5022 18219 3.368427 CCACTAGCAGATTTTCAGTCGGA 60.368 47.826 0.00 0.00 0.00 4.55
5023 18220 2.932614 CCACTAGCAGATTTTCAGTCGG 59.067 50.000 0.00 0.00 0.00 4.79
5024 18221 2.349886 GCCACTAGCAGATTTTCAGTCG 59.650 50.000 0.00 0.00 42.97 4.18
5025 18222 2.680339 GGCCACTAGCAGATTTTCAGTC 59.320 50.000 0.00 0.00 46.50 3.51
5026 18223 2.716217 GGCCACTAGCAGATTTTCAGT 58.284 47.619 0.00 0.00 46.50 3.41
5027 18224 1.667724 CGGCCACTAGCAGATTTTCAG 59.332 52.381 2.24 0.00 46.50 3.02
5028 18225 1.678728 CCGGCCACTAGCAGATTTTCA 60.679 52.381 2.24 0.00 46.50 2.69
5029 18226 1.017387 CCGGCCACTAGCAGATTTTC 58.983 55.000 2.24 0.00 46.50 2.29
5030 18227 0.328258 ACCGGCCACTAGCAGATTTT 59.672 50.000 0.00 0.00 46.50 1.82
5031 18228 1.200519 TACCGGCCACTAGCAGATTT 58.799 50.000 0.00 0.00 46.50 2.17
5032 18229 1.139058 CTTACCGGCCACTAGCAGATT 59.861 52.381 0.00 0.00 46.50 2.40
5033 18230 0.753262 CTTACCGGCCACTAGCAGAT 59.247 55.000 0.00 0.00 46.50 2.90
5034 18231 0.613853 ACTTACCGGCCACTAGCAGA 60.614 55.000 0.00 0.00 46.50 4.26
5035 18232 0.249398 AACTTACCGGCCACTAGCAG 59.751 55.000 0.00 0.00 46.50 4.24
5036 18233 1.205417 GTAACTTACCGGCCACTAGCA 59.795 52.381 0.00 0.00 46.50 3.49
5037 18234 1.479730 AGTAACTTACCGGCCACTAGC 59.520 52.381 0.00 0.00 42.60 3.42
5038 18235 2.223433 CGAGTAACTTACCGGCCACTAG 60.223 54.545 0.00 0.00 0.00 2.57
5039 18236 1.745087 CGAGTAACTTACCGGCCACTA 59.255 52.381 0.00 0.00 0.00 2.74
5040 18237 0.529378 CGAGTAACTTACCGGCCACT 59.471 55.000 0.00 0.00 0.00 4.00
5041 18238 0.244721 ACGAGTAACTTACCGGCCAC 59.755 55.000 0.00 0.00 0.00 5.01
5042 18239 0.244450 CACGAGTAACTTACCGGCCA 59.756 55.000 0.00 0.00 0.00 5.36
5043 18240 0.244721 ACACGAGTAACTTACCGGCC 59.755 55.000 0.00 0.00 0.00 6.13
5044 18241 2.919666 TACACGAGTAACTTACCGGC 57.080 50.000 0.00 0.00 0.00 6.13
5045 18242 7.810766 TTTATTTACACGAGTAACTTACCGG 57.189 36.000 4.86 0.00 39.80 5.28
5066 18263 9.850198 ACTTACCGGCCACTATTATTTATTTTA 57.150 29.630 0.00 0.00 0.00 1.52
5067 18264 8.756486 ACTTACCGGCCACTATTATTTATTTT 57.244 30.769 0.00 0.00 0.00 1.82
5068 18265 8.756486 AACTTACCGGCCACTATTATTTATTT 57.244 30.769 0.00 0.00 0.00 1.40
5069 18266 9.276590 GTAACTTACCGGCCACTATTATTTATT 57.723 33.333 0.00 0.00 0.00 1.40
5070 18267 8.654094 AGTAACTTACCGGCCACTATTATTTAT 58.346 33.333 0.00 0.00 0.00 1.40
5071 18268 8.021898 AGTAACTTACCGGCCACTATTATTTA 57.978 34.615 0.00 0.00 0.00 1.40
5072 18269 6.892485 AGTAACTTACCGGCCACTATTATTT 58.108 36.000 0.00 0.00 0.00 1.40
5073 18270 6.490241 AGTAACTTACCGGCCACTATTATT 57.510 37.500 0.00 0.00 0.00 1.40
5074 18271 5.278660 CGAGTAACTTACCGGCCACTATTAT 60.279 44.000 0.00 0.00 0.00 1.28
5075 18272 4.036734 CGAGTAACTTACCGGCCACTATTA 59.963 45.833 0.00 0.00 0.00 0.98
5076 18273 3.181483 CGAGTAACTTACCGGCCACTATT 60.181 47.826 0.00 0.00 0.00 1.73
5077 18274 2.360165 CGAGTAACTTACCGGCCACTAT 59.640 50.000 0.00 0.00 0.00 2.12
5078 18275 1.745087 CGAGTAACTTACCGGCCACTA 59.255 52.381 0.00 0.00 0.00 2.74
5079 18276 0.529378 CGAGTAACTTACCGGCCACT 59.471 55.000 0.00 0.00 0.00 4.00
5080 18277 0.244721 ACGAGTAACTTACCGGCCAC 59.755 55.000 0.00 0.00 0.00 5.01
5081 18278 0.244450 CACGAGTAACTTACCGGCCA 59.756 55.000 0.00 0.00 0.00 5.36
5082 18279 0.244721 ACACGAGTAACTTACCGGCC 59.755 55.000 0.00 0.00 0.00 6.13
5083 18280 2.919666 TACACGAGTAACTTACCGGC 57.080 50.000 0.00 0.00 0.00 6.13
5084 18281 7.810766 TTATTTTACACGAGTAACTTACCGG 57.189 36.000 4.86 0.00 39.80 5.28
5090 18287 9.846248 AGACGTATTTATTTTACACGAGTAACT 57.154 29.630 4.86 0.00 39.80 2.24
5091 18288 9.877096 CAGACGTATTTATTTTACACGAGTAAC 57.123 33.333 4.86 0.00 39.80 2.50
5092 18289 9.624697 ACAGACGTATTTATTTTACACGAGTAA 57.375 29.630 0.99 0.99 38.40 2.24
5094 18291 9.793252 ATACAGACGTATTTATTTTACACGAGT 57.207 29.630 0.00 0.00 34.53 4.18
5109 18306 9.817809 AATCAGTGTAATCAAATACAGACGTAT 57.182 29.630 0.00 0.00 40.15 3.06
5110 18307 9.297586 GAATCAGTGTAATCAAATACAGACGTA 57.702 33.333 0.00 0.00 36.51 3.57
5111 18308 7.277981 GGAATCAGTGTAATCAAATACAGACGT 59.722 37.037 0.00 0.00 36.51 4.34
5112 18309 7.277760 TGGAATCAGTGTAATCAAATACAGACG 59.722 37.037 0.00 0.00 36.51 4.18
5113 18310 8.492673 TGGAATCAGTGTAATCAAATACAGAC 57.507 34.615 0.00 0.00 36.51 3.51
5114 18311 9.166173 CTTGGAATCAGTGTAATCAAATACAGA 57.834 33.333 0.00 0.00 36.51 3.41
5115 18312 7.912250 GCTTGGAATCAGTGTAATCAAATACAG 59.088 37.037 0.00 0.00 36.51 2.74
5116 18313 7.413988 CGCTTGGAATCAGTGTAATCAAATACA 60.414 37.037 0.00 0.00 33.52 2.29
5117 18314 6.907212 CGCTTGGAATCAGTGTAATCAAATAC 59.093 38.462 0.00 0.00 0.00 1.89
5118 18315 6.458206 GCGCTTGGAATCAGTGTAATCAAATA 60.458 38.462 0.00 0.00 0.00 1.40
5119 18316 5.677091 GCGCTTGGAATCAGTGTAATCAAAT 60.677 40.000 0.00 0.00 0.00 2.32
5120 18317 4.379394 GCGCTTGGAATCAGTGTAATCAAA 60.379 41.667 0.00 0.00 0.00 2.69
5121 18318 3.126858 GCGCTTGGAATCAGTGTAATCAA 59.873 43.478 0.00 0.00 0.00 2.57
5122 18319 2.677836 GCGCTTGGAATCAGTGTAATCA 59.322 45.455 0.00 0.00 0.00 2.57
5123 18320 2.285834 CGCGCTTGGAATCAGTGTAATC 60.286 50.000 5.56 0.00 0.00 1.75
5124 18321 1.665679 CGCGCTTGGAATCAGTGTAAT 59.334 47.619 5.56 0.00 0.00 1.89
5125 18322 1.075542 CGCGCTTGGAATCAGTGTAA 58.924 50.000 5.56 0.00 0.00 2.41
5126 18323 0.739462 CCGCGCTTGGAATCAGTGTA 60.739 55.000 5.56 0.00 0.00 2.90
5127 18324 2.034879 CCGCGCTTGGAATCAGTGT 61.035 57.895 5.56 0.00 0.00 3.55
5128 18325 2.787249 CCGCGCTTGGAATCAGTG 59.213 61.111 5.56 0.00 0.00 3.66
5129 18326 3.127533 GCCGCGCTTGGAATCAGT 61.128 61.111 5.56 0.00 0.00 3.41
5130 18327 2.923426 TAGGCCGCGCTTGGAATCAG 62.923 60.000 5.56 0.00 0.00 2.90
5131 18328 2.529454 TTAGGCCGCGCTTGGAATCA 62.529 55.000 5.56 0.00 0.00 2.57
5132 18329 1.166531 ATTAGGCCGCGCTTGGAATC 61.167 55.000 5.56 0.00 0.00 2.52
5133 18330 1.152963 ATTAGGCCGCGCTTGGAAT 60.153 52.632 5.56 0.00 0.00 3.01
5134 18331 2.112198 CATTAGGCCGCGCTTGGAA 61.112 57.895 5.56 0.00 0.00 3.53
5135 18332 2.513666 CATTAGGCCGCGCTTGGA 60.514 61.111 5.56 0.00 0.00 3.53
5136 18333 3.585990 CCATTAGGCCGCGCTTGG 61.586 66.667 5.56 0.18 0.00 3.61
5146 18343 3.627395 TGTAACTCCAGTGCCATTAGG 57.373 47.619 0.00 0.00 38.23 2.69
5147 18344 5.957842 TTTTGTAACTCCAGTGCCATTAG 57.042 39.130 0.00 0.00 0.00 1.73
5184 18381 4.618920 AAACCACTCAGTCGATTACCTT 57.381 40.909 0.00 0.00 0.00 3.50
5202 18399 2.584492 ACCAACAGCAAGAGCAAAAC 57.416 45.000 0.00 0.00 45.49 2.43
5231 18429 2.289945 GCATTTCAGTCCAGTCCAGACT 60.290 50.000 0.00 0.00 45.45 3.24
5288 18486 3.694926 AGGAATGGAGAAAAGGCAGAAG 58.305 45.455 0.00 0.00 0.00 2.85
5312 18510 0.784778 GCGAAGACGGTGTCAAGAAG 59.215 55.000 0.00 0.00 40.15 2.85
5313 18511 2.895039 GCGAAGACGGTGTCAAGAA 58.105 52.632 0.00 0.00 40.15 2.52
5314 18512 4.647654 GCGAAGACGGTGTCAAGA 57.352 55.556 0.00 0.00 40.15 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.