Multiple sequence alignment - TraesCS1A01G378200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G378200 chr1A 100.000 6093 0 0 1 6093 551056402 551050310 0.000000e+00 11252.0
1 TraesCS1A01G378200 chr1A 87.118 753 59 17 1807 2527 551149826 551149080 0.000000e+00 819.0
2 TraesCS1A01G378200 chr1A 84.522 743 64 21 2607 3343 551149038 551148341 0.000000e+00 688.0
3 TraesCS1A01G378200 chr1A 89.362 47 4 1 1553 1598 551149960 551149914 2.370000e-04 58.4
4 TraesCS1A01G378200 chr1D 93.585 3757 157 40 2379 6093 458681011 458677297 0.000000e+00 5526.0
5 TraesCS1A01G378200 chr1D 85.394 1116 88 38 575 1659 458682660 458681589 0.000000e+00 1088.0
6 TraesCS1A01G378200 chr1D 87.484 791 63 16 2560 3341 458722540 458721777 0.000000e+00 880.0
7 TraesCS1A01G378200 chr1D 89.237 511 46 7 1871 2375 458723365 458722858 1.110000e-176 630.0
8 TraesCS1A01G378200 chr1D 90.090 444 38 4 1925 2362 458681502 458681059 6.850000e-159 571.0
9 TraesCS1A01G378200 chr1D 82.857 420 40 10 913 1322 458724910 458724513 1.260000e-91 348.0
10 TraesCS1A01G378200 chr1D 95.775 71 3 0 1822 1892 458681568 458681498 1.390000e-21 115.0
11 TraesCS1A01G378200 chr1B 91.925 3740 202 58 2380 6093 630065292 630061627 0.000000e+00 5142.0
12 TraesCS1A01G378200 chr1B 89.276 774 36 21 565 1322 630066936 630066194 0.000000e+00 926.0
13 TraesCS1A01G378200 chr1B 90.642 545 46 4 1822 2362 630065886 630065343 0.000000e+00 719.0
14 TraesCS1A01G378200 chr1B 87.780 581 54 8 1810 2375 630259216 630258638 0.000000e+00 664.0
15 TraesCS1A01G378200 chr1B 86.228 501 45 18 2382 2879 630258604 630258125 7.000000e-144 521.0
16 TraesCS1A01G378200 chr1B 86.837 471 36 10 2878 3345 630258001 630257554 2.530000e-138 503.0
17 TraesCS1A01G378200 chr1B 81.239 581 76 21 938 1502 52303224 52302661 7.250000e-119 438.0
18 TraesCS1A01G378200 chr7A 97.059 578 17 0 1 578 592085024 592084447 0.000000e+00 974.0
19 TraesCS1A01G378200 chr7A 95.455 132 5 1 1655 1786 222942451 222942321 6.190000e-50 209.0
20 TraesCS1A01G378200 chr7A 94.074 135 7 1 1650 1784 140763945 140764078 2.880000e-48 204.0
21 TraesCS1A01G378200 chr7A 94.074 135 7 1 1650 1784 141052836 141052969 2.880000e-48 204.0
22 TraesCS1A01G378200 chr7A 94.074 135 7 1 1650 1784 141307623 141307756 2.880000e-48 204.0
23 TraesCS1A01G378200 chr2B 96.367 578 21 0 1 578 534231936 534232513 0.000000e+00 952.0
24 TraesCS1A01G378200 chr2B 96.194 578 22 0 1 578 231628378 231628955 0.000000e+00 946.0
25 TraesCS1A01G378200 chr2B 86.325 117 16 0 2257 2373 73982448 73982564 1.780000e-25 128.0
26 TraesCS1A01G378200 chr6A 96.194 578 21 1 1 578 529047280 529047856 0.000000e+00 944.0
27 TraesCS1A01G378200 chr6A 82.553 470 47 18 941 1389 152802578 152803033 1.240000e-101 381.0
28 TraesCS1A01G378200 chr3B 96.181 576 22 0 2 577 829494039 829494614 0.000000e+00 942.0
29 TraesCS1A01G378200 chr3B 91.156 147 11 2 1654 1799 778740083 778739938 1.340000e-46 198.0
30 TraesCS1A01G378200 chr6B 97.101 552 15 1 27 578 96229937 96230487 0.000000e+00 929.0
31 TraesCS1A01G378200 chr4A 95.156 578 28 0 1 578 737177912 737178489 0.000000e+00 913.0
32 TraesCS1A01G378200 chrUn 96.050 557 22 0 21 577 329985824 329986380 0.000000e+00 907.0
33 TraesCS1A01G378200 chrUn 96.050 557 22 0 21 577 420215659 420215103 0.000000e+00 907.0
34 TraesCS1A01G378200 chrUn 91.156 147 11 2 1654 1799 191163436 191163291 1.340000e-46 198.0
35 TraesCS1A01G378200 chr4D 85.714 546 63 11 2752 3289 278187321 278186783 4.120000e-156 562.0
36 TraesCS1A01G378200 chr3D 82.594 586 64 22 941 1502 52182977 52182406 3.300000e-132 483.0
37 TraesCS1A01G378200 chr2D 82.403 591 62 23 938 1502 333354391 333353817 1.540000e-130 477.0
38 TraesCS1A01G378200 chr5A 85.440 364 30 13 941 1295 595670182 595669833 2.090000e-94 357.0
39 TraesCS1A01G378200 chr5A 92.958 142 8 2 1647 1788 64544598 64544459 8.010000e-49 206.0
40 TraesCS1A01G378200 chr7B 85.124 363 34 11 941 1295 594099197 594099547 2.700000e-93 353.0
41 TraesCS1A01G378200 chr6D 93.525 139 7 2 1648 1786 2680587 2680723 8.010000e-49 206.0
42 TraesCS1A01G378200 chr5B 93.525 139 7 2 1652 1790 290816550 290816686 8.010000e-49 206.0
43 TraesCS1A01G378200 chr5B 82.667 225 22 8 2398 2609 84734993 84734773 3.750000e-42 183.0
44 TraesCS1A01G378200 chr3A 80.913 241 28 10 2382 2609 77895082 77894847 2.260000e-39 174.0
45 TraesCS1A01G378200 chr3A 88.889 117 13 0 2257 2373 648181616 648181732 1.770000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G378200 chr1A 551050310 551056402 6092 True 11252.000000 11252 100.000000 1 6093 1 chr1A.!!$R1 6092
1 TraesCS1A01G378200 chr1A 551148341 551149960 1619 True 521.800000 819 87.000667 1553 3343 3 chr1A.!!$R2 1790
2 TraesCS1A01G378200 chr1D 458677297 458682660 5363 True 1825.000000 5526 91.211000 575 6093 4 chr1D.!!$R1 5518
3 TraesCS1A01G378200 chr1D 458721777 458724910 3133 True 619.333333 880 86.526000 913 3341 3 chr1D.!!$R2 2428
4 TraesCS1A01G378200 chr1B 630061627 630066936 5309 True 2262.333333 5142 90.614333 565 6093 3 chr1B.!!$R2 5528
5 TraesCS1A01G378200 chr1B 630257554 630259216 1662 True 562.666667 664 86.948333 1810 3345 3 chr1B.!!$R3 1535
6 TraesCS1A01G378200 chr1B 52302661 52303224 563 True 438.000000 438 81.239000 938 1502 1 chr1B.!!$R1 564
7 TraesCS1A01G378200 chr7A 592084447 592085024 577 True 974.000000 974 97.059000 1 578 1 chr7A.!!$R2 577
8 TraesCS1A01G378200 chr2B 534231936 534232513 577 False 952.000000 952 96.367000 1 578 1 chr2B.!!$F3 577
9 TraesCS1A01G378200 chr2B 231628378 231628955 577 False 946.000000 946 96.194000 1 578 1 chr2B.!!$F2 577
10 TraesCS1A01G378200 chr6A 529047280 529047856 576 False 944.000000 944 96.194000 1 578 1 chr6A.!!$F2 577
11 TraesCS1A01G378200 chr3B 829494039 829494614 575 False 942.000000 942 96.181000 2 577 1 chr3B.!!$F1 575
12 TraesCS1A01G378200 chr6B 96229937 96230487 550 False 929.000000 929 97.101000 27 578 1 chr6B.!!$F1 551
13 TraesCS1A01G378200 chr4A 737177912 737178489 577 False 913.000000 913 95.156000 1 578 1 chr4A.!!$F1 577
14 TraesCS1A01G378200 chrUn 329985824 329986380 556 False 907.000000 907 96.050000 21 577 1 chrUn.!!$F1 556
15 TraesCS1A01G378200 chrUn 420215103 420215659 556 True 907.000000 907 96.050000 21 577 1 chrUn.!!$R2 556
16 TraesCS1A01G378200 chr4D 278186783 278187321 538 True 562.000000 562 85.714000 2752 3289 1 chr4D.!!$R1 537
17 TraesCS1A01G378200 chr3D 52182406 52182977 571 True 483.000000 483 82.594000 941 1502 1 chr3D.!!$R1 561
18 TraesCS1A01G378200 chr2D 333353817 333354391 574 True 477.000000 477 82.403000 938 1502 1 chr2D.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
168 169 0.389817 CCGTGGAGAAGCGATTGTCA 60.390 55.000 12.86 0.00 0.00 3.58 F
1672 2075 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 F
1779 2182 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 F
1781 2184 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 F
1786 2189 0.107017 CCGGACGGAGGGAGTACTTA 60.107 60.000 4.40 0.00 37.50 2.24 F
2256 3095 0.745486 TCAATGGTCCAGATGCTGCG 60.745 55.000 0.00 0.00 0.00 5.18 F
2780 3770 1.023513 ATGGAAGAACAGCAGAGCGC 61.024 55.000 0.00 0.00 42.91 5.92 F
4298 5457 1.432807 ACTGTCCAAATTGGGGATGGT 59.567 47.619 12.67 2.21 38.32 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 2163 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
2566 3555 0.109153 ATGCACACCACTGCTTGAGA 59.891 50.000 0.00 0.0 38.07 3.27 R
3406 4535 0.109504 GAGAGTCACGAGTGTCTGGC 60.110 60.000 7.65 0.0 0.00 4.85 R
3407 4536 1.529226 AGAGAGTCACGAGTGTCTGG 58.471 55.000 7.65 0.0 33.67 3.86 R
3549 4680 2.820728 TCCTCTTCGACACCTATGGA 57.179 50.000 0.00 0.0 0.00 3.41 R
3550 4681 3.005261 CAGATCCTCTTCGACACCTATGG 59.995 52.174 0.00 0.0 0.00 2.74 R
4460 5619 0.969917 ACAAGCAAAGGCCACACACA 60.970 50.000 5.01 0.0 42.56 3.72 R
5818 6985 0.179189 GGATGCGGTTTTGAGCTTCG 60.179 55.000 0.00 0.0 38.10 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 169 0.389817 CCGTGGAGAAGCGATTGTCA 60.390 55.000 12.86 0.00 0.00 3.58
264 265 0.611896 GGTTTATGCAGTGGGGTGCT 60.612 55.000 0.00 0.00 44.32 4.40
283 284 5.392380 GGTGCTGGAATGTTGAAGTAGAATG 60.392 44.000 0.00 0.00 0.00 2.67
327 328 5.363562 TGCATGTAATGGAGAGACAGAAT 57.636 39.130 0.00 0.00 46.86 2.40
354 355 1.412649 GCCCCTACTCAGCTACCCTTA 60.413 57.143 0.00 0.00 0.00 2.69
644 645 1.515020 GCACAGCACCCAACACAAA 59.485 52.632 0.00 0.00 0.00 2.83
648 649 1.000993 AGCACCCAACACAAACCCA 59.999 52.632 0.00 0.00 0.00 4.51
710 712 2.435663 CAGTGGGCCACATGTCCA 59.564 61.111 36.28 0.00 36.74 4.02
752 755 1.206831 GCTCAGCGAACGGAAAACC 59.793 57.895 0.00 0.00 0.00 3.27
762 765 2.911594 CGGAAAACCGTTCCCGTAA 58.088 52.632 13.80 0.00 37.40 3.18
764 767 1.394572 CGGAAAACCGTTCCCGTAATC 59.605 52.381 13.80 0.00 37.40 1.75
765 768 2.425539 GGAAAACCGTTCCCGTAATCA 58.574 47.619 0.00 0.00 32.48 2.57
767 770 4.190772 GGAAAACCGTTCCCGTAATCATA 58.809 43.478 0.00 0.00 32.48 2.15
768 771 4.818005 GGAAAACCGTTCCCGTAATCATAT 59.182 41.667 0.00 0.00 32.48 1.78
770 773 3.672767 ACCGTTCCCGTAATCATATCC 57.327 47.619 0.00 0.00 0.00 2.59
772 775 2.300723 CCGTTCCCGTAATCATATCCCA 59.699 50.000 0.00 0.00 0.00 4.37
773 776 3.585862 CGTTCCCGTAATCATATCCCAG 58.414 50.000 0.00 0.00 0.00 4.45
774 777 3.006537 CGTTCCCGTAATCATATCCCAGT 59.993 47.826 0.00 0.00 0.00 4.00
775 778 4.566987 GTTCCCGTAATCATATCCCAGTC 58.433 47.826 0.00 0.00 0.00 3.51
776 779 3.170717 TCCCGTAATCATATCCCAGTCC 58.829 50.000 0.00 0.00 0.00 3.85
777 780 2.094182 CCCGTAATCATATCCCAGTCCG 60.094 54.545 0.00 0.00 0.00 4.79
778 781 2.607187 CGTAATCATATCCCAGTCCGC 58.393 52.381 0.00 0.00 0.00 5.54
779 782 2.674177 CGTAATCATATCCCAGTCCGCC 60.674 54.545 0.00 0.00 0.00 6.13
780 783 0.693049 AATCATATCCCAGTCCGCCC 59.307 55.000 0.00 0.00 0.00 6.13
781 784 1.544825 ATCATATCCCAGTCCGCCCG 61.545 60.000 0.00 0.00 0.00 6.13
782 785 3.626924 ATATCCCAGTCCGCCCGC 61.627 66.667 0.00 0.00 0.00 6.13
787 790 4.090588 CCAGTCCGCCCGCCTTTA 62.091 66.667 0.00 0.00 0.00 1.85
788 791 2.818274 CAGTCCGCCCGCCTTTAC 60.818 66.667 0.00 0.00 0.00 2.01
789 792 3.315949 AGTCCGCCCGCCTTTACA 61.316 61.111 0.00 0.00 0.00 2.41
790 793 3.122971 GTCCGCCCGCCTTTACAC 61.123 66.667 0.00 0.00 0.00 2.90
791 794 4.745751 TCCGCCCGCCTTTACACG 62.746 66.667 0.00 0.00 0.00 4.49
799 802 1.966451 GCCTTTACACGGCAGCACT 60.966 57.895 0.00 0.00 46.77 4.40
820 823 1.069906 GCGTAATTAGCAATCCGCAGG 60.070 52.381 10.06 0.00 46.13 4.85
1322 1404 2.729467 CGAGATGGATACGAATCGAGGC 60.729 54.545 10.55 0.00 42.51 4.70
1328 1410 2.223735 GGATACGAATCGAGGCTGTGAA 60.224 50.000 10.55 0.00 32.44 3.18
1342 1424 0.179004 TGTGAAGCGGGGTTTCATGT 60.179 50.000 0.00 0.00 35.46 3.21
1343 1425 0.958822 GTGAAGCGGGGTTTCATGTT 59.041 50.000 0.00 0.00 35.46 2.71
1358 1440 1.078709 ATGTTGTTGTCGATCTGCCG 58.921 50.000 0.00 0.00 0.00 5.69
1378 1460 3.066064 CCGGTCGCAAATCCAAAATGATA 59.934 43.478 0.00 0.00 0.00 2.15
1433 1521 0.599558 TAGCCACTCGCGTGTAGTTT 59.400 50.000 14.12 2.72 44.76 2.66
1436 1524 1.493772 CCACTCGCGTGTAGTTTTCA 58.506 50.000 14.12 0.00 39.55 2.69
1440 1529 4.259810 CCACTCGCGTGTAGTTTTCATATG 60.260 45.833 14.12 0.00 39.55 1.78
1448 1537 6.128661 GCGTGTAGTTTTCATATGTGTCAGAA 60.129 38.462 1.90 0.00 0.00 3.02
1449 1538 7.413000 GCGTGTAGTTTTCATATGTGTCAGAAT 60.413 37.037 1.90 0.00 0.00 2.40
1486 1575 6.202188 ACTTTCGTCGTGTTATGTCTGAAATT 59.798 34.615 0.00 0.00 0.00 1.82
1502 1591 4.072131 TGAAATTGCTACTGACTGGAACC 58.928 43.478 0.00 0.00 0.00 3.62
1503 1592 3.788227 AATTGCTACTGACTGGAACCA 57.212 42.857 0.00 0.00 0.00 3.67
1504 1593 3.788227 ATTGCTACTGACTGGAACCAA 57.212 42.857 0.00 0.00 0.00 3.67
1505 1594 3.569194 TTGCTACTGACTGGAACCAAA 57.431 42.857 0.00 0.00 0.00 3.28
1506 1595 3.788227 TGCTACTGACTGGAACCAAAT 57.212 42.857 0.00 0.00 0.00 2.32
1507 1596 3.411446 TGCTACTGACTGGAACCAAATG 58.589 45.455 0.00 0.00 0.00 2.32
1508 1597 3.072330 TGCTACTGACTGGAACCAAATGA 59.928 43.478 0.00 0.00 0.00 2.57
1509 1598 4.072131 GCTACTGACTGGAACCAAATGAA 58.928 43.478 0.00 0.00 0.00 2.57
1510 1599 4.518970 GCTACTGACTGGAACCAAATGAAA 59.481 41.667 0.00 0.00 0.00 2.69
1511 1600 4.918810 ACTGACTGGAACCAAATGAAAC 57.081 40.909 0.00 0.00 0.00 2.78
1512 1601 3.636764 ACTGACTGGAACCAAATGAAACC 59.363 43.478 0.00 0.00 0.00 3.27
1525 1614 6.930722 ACCAAATGAAACCTGATGATTTTGTC 59.069 34.615 0.00 0.00 0.00 3.18
1537 1626 8.607459 CCTGATGATTTTGTCAACTCATACTAC 58.393 37.037 8.95 0.87 40.97 2.73
1538 1627 9.376075 CTGATGATTTTGTCAACTCATACTACT 57.624 33.333 8.95 0.00 40.97 2.57
1594 1965 1.901833 CCCTGCCAAGCTTATTTTGGT 59.098 47.619 0.00 0.00 45.48 3.67
1662 2065 8.506196 TTAATCATTATGCCTAACTACTCCCT 57.494 34.615 0.00 0.00 0.00 4.20
1663 2066 6.613153 ATCATTATGCCTAACTACTCCCTC 57.387 41.667 0.00 0.00 0.00 4.30
1664 2067 4.838986 TCATTATGCCTAACTACTCCCTCC 59.161 45.833 0.00 0.00 0.00 4.30
1665 2068 1.705873 ATGCCTAACTACTCCCTCCG 58.294 55.000 0.00 0.00 0.00 4.63
1667 2070 1.031235 GCCTAACTACTCCCTCCGTC 58.969 60.000 0.00 0.00 0.00 4.79
1668 2071 1.689984 CCTAACTACTCCCTCCGTCC 58.310 60.000 0.00 0.00 0.00 4.79
1669 2072 1.307097 CTAACTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
1670 2073 0.911769 TAACTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1672 2075 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1674 2077 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1676 2079 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1677 2080 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1678 2081 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1679 2082 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1680 2083 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1681 2084 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1682 2085 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1683 2086 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1684 2087 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1685 2088 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1686 2089 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1704 2107 7.828508 TCATCAAGATGAATAAAAGGGGATG 57.171 36.000 10.16 0.00 44.14 3.51
1705 2108 7.356680 TCATCAAGATGAATAAAAGGGGATGT 58.643 34.615 10.16 0.00 44.14 3.06
1706 2109 8.501904 TCATCAAGATGAATAAAAGGGGATGTA 58.498 33.333 10.16 0.00 44.14 2.29
1707 2110 9.305555 CATCAAGATGAATAAAAGGGGATGTAT 57.694 33.333 4.01 0.00 41.20 2.29
1708 2111 8.924511 TCAAGATGAATAAAAGGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
1709 2112 8.727149 TCAAGATGAATAAAAGGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
1712 2115 9.621239 AGATGAATAAAAGGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
1747 2150 8.658840 AGTTCTAGATACATCCCTCTTTATCC 57.341 38.462 0.00 0.00 0.00 2.59
1748 2151 8.235230 AGTTCTAGATACATCCCTCTTTATCCA 58.765 37.037 0.00 0.00 0.00 3.41
1749 2152 9.041354 GTTCTAGATACATCCCTCTTTATCCAT 57.959 37.037 0.00 0.00 0.00 3.41
1750 2153 9.621239 TTCTAGATACATCCCTCTTTATCCATT 57.379 33.333 0.00 0.00 0.00 3.16
1751 2154 9.621239 TCTAGATACATCCCTCTTTATCCATTT 57.379 33.333 0.00 0.00 0.00 2.32
1752 2155 9.883142 CTAGATACATCCCTCTTTATCCATTTC 57.117 37.037 0.00 0.00 0.00 2.17
1753 2156 7.390027 AGATACATCCCTCTTTATCCATTTCG 58.610 38.462 0.00 0.00 0.00 3.46
1754 2157 5.630415 ACATCCCTCTTTATCCATTTCGA 57.370 39.130 0.00 0.00 0.00 3.71
1755 2158 6.192970 ACATCCCTCTTTATCCATTTCGAT 57.807 37.500 0.00 0.00 0.00 3.59
1756 2159 6.000219 ACATCCCTCTTTATCCATTTCGATG 59.000 40.000 0.00 0.00 0.00 3.84
1757 2160 5.887214 TCCCTCTTTATCCATTTCGATGA 57.113 39.130 0.00 0.00 0.00 2.92
1758 2161 5.611374 TCCCTCTTTATCCATTTCGATGAC 58.389 41.667 0.00 0.00 0.00 3.06
1759 2162 5.130311 TCCCTCTTTATCCATTTCGATGACA 59.870 40.000 0.00 0.00 0.00 3.58
1760 2163 5.822519 CCCTCTTTATCCATTTCGATGACAA 59.177 40.000 0.00 0.00 0.00 3.18
1761 2164 6.017605 CCCTCTTTATCCATTTCGATGACAAG 60.018 42.308 0.00 0.00 0.00 3.16
1762 2165 6.540189 CCTCTTTATCCATTTCGATGACAAGT 59.460 38.462 0.00 0.00 0.00 3.16
1763 2166 7.710907 CCTCTTTATCCATTTCGATGACAAGTA 59.289 37.037 0.00 0.00 0.00 2.24
1764 2167 9.265901 CTCTTTATCCATTTCGATGACAAGTAT 57.734 33.333 0.00 0.00 0.00 2.12
1765 2168 9.613428 TCTTTATCCATTTCGATGACAAGTATT 57.387 29.630 0.00 0.00 0.00 1.89
1768 2171 6.677781 TCCATTTCGATGACAAGTATTTCC 57.322 37.500 0.00 0.00 0.00 3.13
1769 2172 5.293324 TCCATTTCGATGACAAGTATTTCCG 59.707 40.000 0.00 0.00 0.00 4.30
1770 2173 5.501715 CATTTCGATGACAAGTATTTCCGG 58.498 41.667 0.00 0.00 0.00 5.14
1771 2174 4.459390 TTCGATGACAAGTATTTCCGGA 57.541 40.909 0.00 0.00 0.00 5.14
1772 2175 3.777478 TCGATGACAAGTATTTCCGGAC 58.223 45.455 1.83 0.00 0.00 4.79
1773 2176 2.534349 CGATGACAAGTATTTCCGGACG 59.466 50.000 1.83 0.00 0.00 4.79
1774 2177 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1775 2178 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1776 2179 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1777 2180 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1778 2181 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1779 2182 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1780 2183 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1781 2184 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1782 2185 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1783 2186 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1784 2187 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1785 2188 1.379576 CCGGACGGAGGGAGTACTT 60.380 63.158 4.40 0.00 37.50 2.24
1786 2189 0.107017 CCGGACGGAGGGAGTACTTA 60.107 60.000 4.40 0.00 37.50 2.24
1787 2190 1.683011 CCGGACGGAGGGAGTACTTAA 60.683 57.143 4.40 0.00 37.50 1.85
1793 2196 6.207417 CGGACGGAGGGAGTACTTAATAATAA 59.793 42.308 0.00 0.00 0.00 1.40
1800 2203 9.503399 GAGGGAGTACTTAATAATAAACATGGG 57.497 37.037 0.00 0.00 0.00 4.00
1803 2206 8.985805 GGAGTACTTAATAATAAACATGGGTCG 58.014 37.037 0.00 0.00 0.00 4.79
1950 2770 7.231467 ACTGTCCACTAATTTTACCATTGACT 58.769 34.615 0.00 0.00 0.00 3.41
1968 2788 8.693542 CATTGACTATGGAAAATTTGAAGGAC 57.306 34.615 0.00 0.00 0.00 3.85
1970 2790 9.753674 ATTGACTATGGAAAATTTGAAGGACTA 57.246 29.630 0.00 0.00 0.00 2.59
1980 2800 8.422577 AAAATTTGAAGGACTAACTGGCTTAT 57.577 30.769 0.00 0.00 0.00 1.73
2007 2839 4.081322 TGGAAACACTCTTAACACCCTC 57.919 45.455 0.00 0.00 33.40 4.30
2010 2842 5.367352 TGGAAACACTCTTAACACCCTCTTA 59.633 40.000 0.00 0.00 33.40 2.10
2026 2861 5.191722 ACCCTCTTAGCACTCCATTTCATTA 59.808 40.000 0.00 0.00 0.00 1.90
2049 2884 6.403866 ACTGCTTAATGTCATTTGTTTCCA 57.596 33.333 2.79 0.00 0.00 3.53
2080 2917 9.076596 GTTTTATTTCTGCTAACTAAATGCCTG 57.923 33.333 0.00 0.00 0.00 4.85
2091 2928 3.828451 ACTAAATGCCTGTCATGCTTGTT 59.172 39.130 1.67 0.00 35.13 2.83
2137 2974 3.780294 ACAAGGTATTGAGCCTATGGTGA 59.220 43.478 0.00 0.00 38.83 4.02
2149 2986 6.127619 TGAGCCTATGGTGATAGAATGTATCG 60.128 42.308 0.00 0.00 34.44 2.92
2173 3012 7.343057 TCGTATATTCATATGATCTGGAAGGCT 59.657 37.037 6.17 0.00 29.40 4.58
2256 3095 0.745486 TCAATGGTCCAGATGCTGCG 60.745 55.000 0.00 0.00 0.00 5.18
2292 3131 1.952296 CTGATGGCTAGGGTTGATTGC 59.048 52.381 0.00 0.00 0.00 3.56
2375 3221 9.073368 GCTAAATAACTAAGCACTTTAAAAGGC 57.927 33.333 3.23 3.23 36.26 4.35
2396 3269 7.354751 AGGCTAGAAATAACCTAGAGAAGTG 57.645 40.000 0.00 0.00 36.58 3.16
2423 3298 7.222805 TCGATGTGCATCTTCAGTTTATAGTTC 59.777 37.037 10.05 0.00 35.72 3.01
2443 3318 2.811431 TCGTCCTGTTTGTTATTGCCAG 59.189 45.455 0.00 0.00 0.00 4.85
2446 3321 1.617850 CCTGTTTGTTATTGCCAGCCA 59.382 47.619 0.00 0.00 0.00 4.75
2485 3360 5.049129 CAGGAGGTTCTTCTCATGTGAAAAC 60.049 44.000 11.11 15.18 39.75 2.43
2489 3364 7.174946 GGAGGTTCTTCTCATGTGAAAACATTA 59.825 37.037 22.36 2.32 35.58 1.90
2496 3377 8.539770 TTCTCATGTGAAAACATTAGTCTCTC 57.460 34.615 7.72 0.00 0.00 3.20
2780 3770 1.023513 ATGGAAGAACAGCAGAGCGC 61.024 55.000 0.00 0.00 42.91 5.92
2840 3830 7.277174 AGTTTTTCTCCCAACTATTTCACTG 57.723 36.000 0.00 0.00 31.20 3.66
2864 3856 6.092122 TGTCGCTAAAAGTTCAGTTGATATGG 59.908 38.462 0.00 0.00 0.00 2.74
2884 4002 9.431887 GATATGGCATCTACCGAACTATTAAAA 57.568 33.333 1.65 0.00 0.00 1.52
2893 4011 9.005777 TCTACCGAACTATTAAAATTTTGTGCT 57.994 29.630 13.76 0.00 0.00 4.40
2920 4039 8.290325 CCTATTTTTGTTACCTCTGTTTCTGAC 58.710 37.037 0.00 0.00 0.00 3.51
2980 4102 4.871993 ATTCTGTTGCTTAGATGCTTCG 57.128 40.909 0.00 0.00 0.00 3.79
2983 4105 5.262588 TCTGTTGCTTAGATGCTTCGATA 57.737 39.130 0.00 0.00 0.00 2.92
2989 4111 6.925610 TGCTTAGATGCTTCGATATTTTGT 57.074 33.333 0.00 0.00 0.00 2.83
3070 4195 2.158449 GCTCGTTCACTTTGGATGACAG 59.842 50.000 0.00 0.00 0.00 3.51
3132 4258 4.160439 CAGATCCTAAACAGGTACAGCTGA 59.840 45.833 23.35 0.48 0.00 4.26
3218 4346 3.134081 TGAGTCCTTCAGAACCTTCGTTT 59.866 43.478 0.00 0.00 30.30 3.60
3304 4433 6.781138 TCATGCGTTACAGATAATTTTGGAC 58.219 36.000 0.00 0.00 0.00 4.02
3305 4434 6.372937 TCATGCGTTACAGATAATTTTGGACA 59.627 34.615 0.00 0.00 0.00 4.02
3318 4447 8.934023 ATAATTTTGGACAACAAGGTTCTAGA 57.066 30.769 0.00 0.00 40.82 2.43
3329 4458 9.167311 ACAACAAGGTTCTAGATAAATGATCAC 57.833 33.333 0.00 0.00 36.98 3.06
3381 4510 3.319137 TTTGCTGACTACTGCTACTGG 57.681 47.619 0.00 0.00 40.71 4.00
3406 4535 6.492007 ACTTGCAAACTGTAGATGATCAAG 57.508 37.500 0.00 0.00 35.75 3.02
3407 4536 4.952262 TGCAAACTGTAGATGATCAAGC 57.048 40.909 0.00 0.00 0.00 4.01
3482 4612 2.774234 CCATCCAAGAGGTATGAGGTGT 59.226 50.000 0.00 0.00 35.89 4.16
3610 4741 2.028420 TTGATGATCACTGGCCTTCG 57.972 50.000 3.32 0.00 0.00 3.79
3758 4889 6.207213 CCTGATGCTGATTTCTTTTCTATGC 58.793 40.000 0.00 0.00 0.00 3.14
3768 4899 9.383519 TGATTTCTTTTCTATGCGTTCTCTTAT 57.616 29.630 0.00 0.00 0.00 1.73
3798 4931 3.440173 CCTTGTTGATATCCCACACACAC 59.560 47.826 0.00 0.00 0.00 3.82
3817 4950 6.017192 CACACACAATCTGAACTGGTGATTTA 60.017 38.462 0.00 0.00 33.82 1.40
3860 4993 4.902443 TCAGTCCTGATTTACTCTAGCG 57.098 45.455 0.00 0.00 34.14 4.26
3866 4999 7.804129 CAGTCCTGATTTACTCTAGCGTAATAC 59.196 40.741 6.17 4.86 0.00 1.89
3873 5006 3.539604 ACTCTAGCGTAATACCTGACGT 58.460 45.455 0.00 0.00 41.13 4.34
3944 5077 3.677156 AGAGCCAATTTTCATAGCCCT 57.323 42.857 0.00 0.00 0.00 5.19
3959 5092 9.444600 TTTCATAGCCCTTAGTTGTTTAACTAG 57.555 33.333 0.00 0.00 46.80 2.57
3995 5128 6.468956 GGAATGTATTGTGTATGTGCTTTTCG 59.531 38.462 0.00 0.00 0.00 3.46
4043 5178 8.075593 TCTTATTTTTGTTTTTGCTGCAGATC 57.924 30.769 20.43 0.12 0.00 2.75
4137 5272 7.544217 ACATTTTCGTAGGGTGCAATTTTATTC 59.456 33.333 0.00 0.00 0.00 1.75
4298 5457 1.432807 ACTGTCCAAATTGGGGATGGT 59.567 47.619 12.67 2.21 38.32 3.55
4319 5478 4.226761 GTGAAAGCCAATCAACCTTTACG 58.773 43.478 0.00 0.00 0.00 3.18
4388 5547 5.294306 CCGCAAACACTTCTATGATATGTGT 59.706 40.000 0.00 0.00 42.68 3.72
4404 5563 7.215789 TGATATGTGTTCAAGGTTTGCAAAAT 58.784 30.769 14.67 2.58 0.00 1.82
4410 5569 7.064016 TGTGTTCAAGGTTTGCAAAATAAACTC 59.936 33.333 14.67 13.88 37.96 3.01
4426 5585 8.574196 AAATAAACTCTGTGTTACATTGTTGC 57.426 30.769 0.00 0.00 38.03 4.17
4430 5589 6.935741 ACTCTGTGTTACATTGTTGCTTTA 57.064 33.333 0.00 0.00 0.00 1.85
4435 5594 8.865001 TCTGTGTTACATTGTTGCTTTAAAAAC 58.135 29.630 0.00 0.00 0.00 2.43
4462 5621 4.891992 AAACTACTACATGCCTGACTGT 57.108 40.909 0.00 0.00 0.00 3.55
4463 5622 3.876274 ACTACTACATGCCTGACTGTG 57.124 47.619 0.00 0.00 0.00 3.66
4602 5761 1.876156 GGAACTGGCGATCCATCATTC 59.124 52.381 0.00 0.00 42.51 2.67
4665 5824 2.839486 ATCGTTCTTCAAGCAGGACA 57.161 45.000 0.00 0.00 0.00 4.02
4675 5834 1.067295 AAGCAGGACAAGTGATGGGA 58.933 50.000 0.00 0.00 0.00 4.37
4701 5860 2.704572 CAGGTTGACTGGAATGAGGAC 58.295 52.381 0.00 0.00 43.70 3.85
4917 6076 2.903135 ACTAGCTTGCTTCTGGAGAACT 59.097 45.455 0.00 0.00 0.00 3.01
5017 6177 1.163420 TCATTCTTGCCGTGTGCGTT 61.163 50.000 0.00 0.00 45.60 4.84
5116 6276 2.113986 GCCCACCAGTTGCTCACT 59.886 61.111 0.00 0.00 35.35 3.41
5264 6424 3.878778 ACAGAAGCATGATGACCTAACC 58.121 45.455 0.00 0.00 0.00 2.85
5339 6501 2.879026 CTGATTGCTGGACATGGATGAG 59.121 50.000 0.00 0.00 0.00 2.90
5363 6525 0.254462 TGCTGCCCATTTGATCCGTA 59.746 50.000 0.00 0.00 0.00 4.02
5378 6540 9.757227 ATTTGATCCGTAAAATTTTGAACTCAA 57.243 25.926 13.76 11.93 0.00 3.02
5394 6556 9.567776 TTTGAACTCAATGTTAATCCTGAAGTA 57.432 29.630 0.00 0.00 39.30 2.24
5413 6576 7.204604 TGAAGTATTGCGACTTTTATCGGATA 58.795 34.615 0.00 0.00 42.30 2.59
5504 6667 2.353011 CCTTACACAAGCAGCATTTGGG 60.353 50.000 0.00 0.00 35.10 4.12
5551 6717 2.425312 ACAACAACAATGAAGGCGACAA 59.575 40.909 0.00 0.00 0.00 3.18
5596 6762 3.546616 CGCATCGAATGTACATTGCACAT 60.547 43.478 25.42 8.71 38.25 3.21
5597 6763 4.353737 GCATCGAATGTACATTGCACATT 58.646 39.130 25.42 13.80 46.58 2.71
5665 6831 3.188048 CAGCAGGAACACTTCATCTTCAC 59.812 47.826 0.00 0.00 0.00 3.18
5701 6867 5.985530 CGAGTGTCCATGAATGTACATATGT 59.014 40.000 13.93 13.93 29.33 2.29
5702 6868 6.074142 CGAGTGTCCATGAATGTACATATGTG 60.074 42.308 18.81 7.89 29.33 3.21
5733 6900 8.573885 TCTTTCGATATACACAGGTATTCGAAT 58.426 33.333 16.15 16.15 45.41 3.34
5736 6903 9.783256 TTCGATATACACAGGTATTCGAATATG 57.217 33.333 20.21 16.97 43.86 1.78
5750 6917 9.197694 GTATTCGAATATGATATATGGACAGCC 57.802 37.037 20.21 0.00 0.00 4.85
5801 6968 5.543507 ACATATCCTCCATCTCTTGTGTC 57.456 43.478 0.00 0.00 0.00 3.67
5802 6969 4.038522 ACATATCCTCCATCTCTTGTGTCG 59.961 45.833 0.00 0.00 0.00 4.35
5840 7007 0.036732 AGCTCAAAACCGCATCCAGA 59.963 50.000 0.00 0.00 0.00 3.86
5855 7026 1.138859 TCCAGATGCCATACTTGACGG 59.861 52.381 0.00 0.00 0.00 4.79
6007 7178 2.028294 TGCATTGCGTTCCATTTCCATT 60.028 40.909 3.84 0.00 0.00 3.16
6070 7244 5.480422 AGGATCAAGATGGTTTTACAAACCC 59.520 40.000 14.47 0.00 39.54 4.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.662961 CCGCAGCTGGACGTGTCA 62.663 66.667 17.12 0.00 0.00 3.58
168 169 6.492087 GTGTTATCTATAAGCTCTGAGACCCT 59.508 42.308 9.28 0.00 0.00 4.34
264 265 6.875726 CAGTCTCATTCTACTTCAACATTCCA 59.124 38.462 0.00 0.00 0.00 3.53
283 284 4.585955 TGTACCAGTTCTTCACAGTCTC 57.414 45.455 0.00 0.00 0.00 3.36
327 328 0.328258 GCTGAGTAGGGGCTCCAAAA 59.672 55.000 4.79 0.00 34.74 2.44
354 355 2.827921 GGGCCAGATGAAAACAATCAGT 59.172 45.455 4.39 0.00 31.76 3.41
434 435 4.280929 TCATAGCATCGCCTAGCTAGAAAA 59.719 41.667 22.70 6.84 45.53 2.29
535 536 6.654161 CCTTGTGGCATTTTATTCAATTTGGA 59.346 34.615 0.00 0.00 0.00 3.53
644 645 2.524148 GGCTTTGCTGGGTTGGGT 60.524 61.111 0.00 0.00 0.00 4.51
648 649 2.489275 CGTGTGGCTTTGCTGGGTT 61.489 57.895 0.00 0.00 0.00 4.11
754 757 3.581332 GGACTGGGATATGATTACGGGAA 59.419 47.826 0.00 0.00 0.00 3.97
759 762 2.354805 GGGCGGACTGGGATATGATTAC 60.355 54.545 0.00 0.00 0.00 1.89
760 763 1.906574 GGGCGGACTGGGATATGATTA 59.093 52.381 0.00 0.00 0.00 1.75
762 765 1.544825 CGGGCGGACTGGGATATGAT 61.545 60.000 0.00 0.00 0.00 2.45
764 767 2.343758 CGGGCGGACTGGGATATG 59.656 66.667 0.00 0.00 0.00 1.78
765 768 3.626924 GCGGGCGGACTGGGATAT 61.627 66.667 0.00 0.00 0.00 1.63
770 773 4.090588 TAAAGGCGGGCGGACTGG 62.091 66.667 0.00 0.00 30.64 4.00
772 775 3.315949 TGTAAAGGCGGGCGGACT 61.316 61.111 0.00 0.00 32.71 3.85
773 776 3.122971 GTGTAAAGGCGGGCGGAC 61.123 66.667 0.00 0.00 0.00 4.79
774 777 4.745751 CGTGTAAAGGCGGGCGGA 62.746 66.667 0.00 0.00 0.00 5.54
782 785 1.868997 CAGTGCTGCCGTGTAAAGG 59.131 57.895 0.00 0.00 39.09 3.11
793 796 3.546815 GGATTGCTAATTACGCAGTGCTG 60.547 47.826 14.33 9.40 45.73 4.41
802 805 1.069906 CGCCTGCGGATTGCTAATTAC 60.070 52.381 3.07 0.00 46.63 1.89
804 807 0.748005 ACGCCTGCGGATTGCTAATT 60.748 50.000 16.63 0.00 46.63 1.40
810 813 1.070843 CGTAATTACGCCTGCGGATTG 60.071 52.381 23.72 2.09 43.14 2.67
834 838 6.239396 AGACTTTTAGTTAGGGGAAAGCTTC 58.761 40.000 0.00 0.00 33.53 3.86
836 840 5.844773 AGACTTTTAGTTAGGGGAAAGCT 57.155 39.130 0.00 0.00 33.53 3.74
850 854 2.290450 CCGCCTGGGGTTTAGACTTTTA 60.290 50.000 10.09 0.00 0.00 1.52
882 886 3.003482 GTCAGACCAGCAGTAGTATACCG 59.997 52.174 0.00 0.00 44.47 4.02
1270 1297 5.174761 CAGATCAAATCGAATCGAAGAGACC 59.825 44.000 10.12 0.00 43.63 3.85
1273 1300 5.284864 TCCAGATCAAATCGAATCGAAGAG 58.715 41.667 10.12 2.28 43.63 2.85
1322 1404 0.523072 CATGAAACCCCGCTTCACAG 59.477 55.000 0.00 0.00 35.70 3.66
1328 1410 0.673437 CAACAACATGAAACCCCGCT 59.327 50.000 0.00 0.00 0.00 5.52
1342 1424 0.669318 GACCGGCAGATCGACAACAA 60.669 55.000 0.00 0.00 0.00 2.83
1343 1425 1.080093 GACCGGCAGATCGACAACA 60.080 57.895 0.00 0.00 0.00 3.33
1358 1440 5.650543 ACTTATCATTTTGGATTTGCGACC 58.349 37.500 0.00 0.00 0.00 4.79
1369 1451 9.483062 GAAATCAGAGACGAACTTATCATTTTG 57.517 33.333 0.00 0.00 0.00 2.44
1378 1460 4.264460 AGCTGAAATCAGAGACGAACTT 57.736 40.909 14.43 0.00 46.59 2.66
1486 1575 3.072330 TCATTTGGTTCCAGTCAGTAGCA 59.928 43.478 0.00 0.00 0.00 3.49
1502 1591 7.949903 TGACAAAATCATCAGGTTTCATTTG 57.050 32.000 0.00 0.00 29.99 2.32
1503 1592 8.206189 AGTTGACAAAATCATCAGGTTTCATTT 58.794 29.630 0.00 0.00 37.11 2.32
1504 1593 7.729116 AGTTGACAAAATCATCAGGTTTCATT 58.271 30.769 0.00 0.00 37.11 2.57
1505 1594 7.014518 TGAGTTGACAAAATCATCAGGTTTCAT 59.985 33.333 0.00 0.00 35.57 2.57
1506 1595 6.320926 TGAGTTGACAAAATCATCAGGTTTCA 59.679 34.615 0.00 0.00 35.57 2.69
1507 1596 6.738114 TGAGTTGACAAAATCATCAGGTTTC 58.262 36.000 0.00 0.00 35.57 2.78
1508 1597 6.713762 TGAGTTGACAAAATCATCAGGTTT 57.286 33.333 0.00 0.00 35.57 3.27
1509 1598 6.906157 ATGAGTTGACAAAATCATCAGGTT 57.094 33.333 10.09 0.00 45.45 3.50
1510 1599 7.170965 AGTATGAGTTGACAAAATCATCAGGT 58.829 34.615 16.49 1.89 45.45 4.00
1511 1600 7.621428 AGTATGAGTTGACAAAATCATCAGG 57.379 36.000 16.49 0.00 45.45 3.86
1512 1601 9.376075 AGTAGTATGAGTTGACAAAATCATCAG 57.624 33.333 16.49 0.00 45.45 2.90
1537 1626 9.713740 GAGCATAGATTCACTCAAACAAAATAG 57.286 33.333 0.00 0.00 0.00 1.73
1538 1627 9.453572 AGAGCATAGATTCACTCAAACAAAATA 57.546 29.630 0.00 0.00 0.00 1.40
1540 1629 7.750229 AGAGCATAGATTCACTCAAACAAAA 57.250 32.000 0.00 0.00 0.00 2.44
1544 1633 7.711846 TCTCTAGAGCATAGATTCACTCAAAC 58.288 38.462 15.35 0.00 0.00 2.93
1545 1634 7.888250 TCTCTAGAGCATAGATTCACTCAAA 57.112 36.000 15.35 0.00 0.00 2.69
1546 1635 7.505248 ACATCTCTAGAGCATAGATTCACTCAA 59.495 37.037 15.35 0.00 0.00 3.02
1548 1637 7.452880 ACATCTCTAGAGCATAGATTCACTC 57.547 40.000 15.35 0.00 0.00 3.51
1550 1639 7.090173 GGAACATCTCTAGAGCATAGATTCAC 58.910 42.308 15.35 4.21 0.00 3.18
1659 2062 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1660 2063 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1662 2065 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1663 2066 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1664 2067 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1677 2080 7.181361 TCCCCTTTTATTCATCTTGATGACAA 58.819 34.615 12.28 7.53 34.65 3.18
1678 2081 6.730447 TCCCCTTTTATTCATCTTGATGACA 58.270 36.000 12.28 5.64 0.00 3.58
1679 2082 7.286316 ACATCCCCTTTTATTCATCTTGATGAC 59.714 37.037 12.28 0.00 32.39 3.06
1680 2083 7.356680 ACATCCCCTTTTATTCATCTTGATGA 58.643 34.615 9.02 9.02 32.39 2.92
1681 2084 7.592885 ACATCCCCTTTTATTCATCTTGATG 57.407 36.000 4.35 4.35 33.80 3.07
1682 2085 9.525826 GATACATCCCCTTTTATTCATCTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
1683 2086 8.727149 AGATACATCCCCTTTTATTCATCTTGA 58.273 33.333 0.00 0.00 0.00 3.02
1684 2087 8.930846 AGATACATCCCCTTTTATTCATCTTG 57.069 34.615 0.00 0.00 0.00 3.02
1686 2089 9.621239 TCTAGATACATCCCCTTTTATTCATCT 57.379 33.333 0.00 0.00 0.00 2.90
1721 2124 9.756571 GGATAAAGAGGGATGTATCTAGAACTA 57.243 37.037 0.00 0.00 0.00 2.24
1722 2125 8.235230 TGGATAAAGAGGGATGTATCTAGAACT 58.765 37.037 0.00 0.00 0.00 3.01
1723 2126 8.423906 TGGATAAAGAGGGATGTATCTAGAAC 57.576 38.462 0.00 0.00 0.00 3.01
1724 2127 9.621239 AATGGATAAAGAGGGATGTATCTAGAA 57.379 33.333 0.00 0.00 0.00 2.10
1725 2128 9.621239 AAATGGATAAAGAGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
1726 2129 9.883142 GAAATGGATAAAGAGGGATGTATCTAG 57.117 37.037 0.00 0.00 0.00 2.43
1727 2130 8.531982 CGAAATGGATAAAGAGGGATGTATCTA 58.468 37.037 0.00 0.00 0.00 1.98
1728 2131 7.235606 TCGAAATGGATAAAGAGGGATGTATCT 59.764 37.037 0.00 0.00 0.00 1.98
1729 2132 7.386851 TCGAAATGGATAAAGAGGGATGTATC 58.613 38.462 0.00 0.00 0.00 2.24
1730 2133 7.316393 TCGAAATGGATAAAGAGGGATGTAT 57.684 36.000 0.00 0.00 0.00 2.29
1731 2134 6.740944 TCGAAATGGATAAAGAGGGATGTA 57.259 37.500 0.00 0.00 0.00 2.29
1732 2135 5.630415 TCGAAATGGATAAAGAGGGATGT 57.370 39.130 0.00 0.00 0.00 3.06
1733 2136 6.148480 GTCATCGAAATGGATAAAGAGGGATG 59.852 42.308 0.00 0.00 33.42 3.51
1734 2137 6.183361 TGTCATCGAAATGGATAAAGAGGGAT 60.183 38.462 0.00 0.00 33.42 3.85
1735 2138 5.130311 TGTCATCGAAATGGATAAAGAGGGA 59.870 40.000 0.00 0.00 33.42 4.20
1736 2139 5.368145 TGTCATCGAAATGGATAAAGAGGG 58.632 41.667 0.00 0.00 33.42 4.30
1737 2140 6.540189 ACTTGTCATCGAAATGGATAAAGAGG 59.460 38.462 0.00 0.00 33.42 3.69
1738 2141 7.545362 ACTTGTCATCGAAATGGATAAAGAG 57.455 36.000 0.00 0.00 33.42 2.85
1739 2142 9.613428 AATACTTGTCATCGAAATGGATAAAGA 57.387 29.630 0.00 0.00 33.42 2.52
1742 2145 8.836413 GGAAATACTTGTCATCGAAATGGATAA 58.164 33.333 0.00 0.00 33.42 1.75
1743 2146 7.170828 CGGAAATACTTGTCATCGAAATGGATA 59.829 37.037 0.00 0.00 33.42 2.59
1744 2147 6.017934 CGGAAATACTTGTCATCGAAATGGAT 60.018 38.462 0.00 0.00 33.42 3.41
1745 2148 5.293324 CGGAAATACTTGTCATCGAAATGGA 59.707 40.000 0.00 0.00 33.42 3.41
1746 2149 5.501715 CGGAAATACTTGTCATCGAAATGG 58.498 41.667 0.00 0.00 33.42 3.16
1747 2150 5.293324 TCCGGAAATACTTGTCATCGAAATG 59.707 40.000 0.00 0.00 0.00 2.32
1748 2151 5.293569 GTCCGGAAATACTTGTCATCGAAAT 59.706 40.000 5.23 0.00 0.00 2.17
1749 2152 4.628333 GTCCGGAAATACTTGTCATCGAAA 59.372 41.667 5.23 0.00 0.00 3.46
1750 2153 4.178540 GTCCGGAAATACTTGTCATCGAA 58.821 43.478 5.23 0.00 0.00 3.71
1751 2154 3.732774 CGTCCGGAAATACTTGTCATCGA 60.733 47.826 5.23 0.00 0.00 3.59
1752 2155 2.534349 CGTCCGGAAATACTTGTCATCG 59.466 50.000 5.23 0.00 0.00 3.84
1753 2156 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1754 2157 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1755 2158 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1756 2159 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1757 2160 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1758 2161 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1759 2162 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1760 2163 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1761 2164 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1762 2165 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1763 2166 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1764 2167 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1765 2168 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1766 2169 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1767 2170 0.107017 TAAGTACTCCCTCCGTCCGG 60.107 60.000 0.00 0.00 0.00 5.14
1768 2171 1.755179 TTAAGTACTCCCTCCGTCCG 58.245 55.000 0.00 0.00 0.00 4.79
1769 2172 7.530426 TTATTATTAAGTACTCCCTCCGTCC 57.470 40.000 0.00 0.00 0.00 4.79
1770 2173 8.416329 TGTTTATTATTAAGTACTCCCTCCGTC 58.584 37.037 0.00 0.00 0.00 4.79
1771 2174 8.310122 TGTTTATTATTAAGTACTCCCTCCGT 57.690 34.615 0.00 0.00 0.00 4.69
1772 2175 9.204570 CATGTTTATTATTAAGTACTCCCTCCG 57.795 37.037 0.00 0.00 0.00 4.63
1773 2176 9.503399 CCATGTTTATTATTAAGTACTCCCTCC 57.497 37.037 0.00 0.00 0.00 4.30
1774 2177 9.503399 CCCATGTTTATTATTAAGTACTCCCTC 57.497 37.037 0.00 0.00 0.00 4.30
1775 2178 9.010767 ACCCATGTTTATTATTAAGTACTCCCT 57.989 33.333 0.00 0.00 0.00 4.20
1776 2179 9.281371 GACCCATGTTTATTATTAAGTACTCCC 57.719 37.037 0.00 0.00 0.00 4.30
1777 2180 8.985805 CGACCCATGTTTATTATTAAGTACTCC 58.014 37.037 0.00 0.00 0.00 3.85
1778 2181 9.538508 ACGACCCATGTTTATTATTAAGTACTC 57.461 33.333 0.00 0.00 0.00 2.59
1785 2188 9.483916 CACATCTACGACCCATGTTTATTATTA 57.516 33.333 0.00 0.00 0.00 0.98
1786 2189 7.444183 CCACATCTACGACCCATGTTTATTATT 59.556 37.037 0.00 0.00 0.00 1.40
1787 2190 6.934645 CCACATCTACGACCCATGTTTATTAT 59.065 38.462 0.00 0.00 0.00 1.28
1793 2196 2.093658 GTCCACATCTACGACCCATGTT 60.094 50.000 0.00 0.00 0.00 2.71
1800 2203 5.990386 TCACTCTATAGTCCACATCTACGAC 59.010 44.000 0.00 0.00 31.97 4.34
1803 2206 9.674068 TGATATCACTCTATAGTCCACATCTAC 57.326 37.037 0.00 0.00 31.97 2.59
1869 2689 5.183904 AGCAGCAATTTACTAGGGACAAAAG 59.816 40.000 0.00 0.00 0.00 2.27
1950 2770 7.093945 GCCAGTTAGTCCTTCAAATTTTCCATA 60.094 37.037 0.00 0.00 0.00 2.74
1968 2788 6.206634 TGTTTCCACAAAGATAAGCCAGTTAG 59.793 38.462 0.00 0.00 0.00 2.34
1970 2790 4.892934 TGTTTCCACAAAGATAAGCCAGTT 59.107 37.500 0.00 0.00 0.00 3.16
1980 2800 5.355910 GGTGTTAAGAGTGTTTCCACAAAGA 59.644 40.000 0.00 0.00 44.39 2.52
2007 2839 5.587844 AGCAGTAATGAAATGGAGTGCTAAG 59.412 40.000 0.00 0.00 43.84 2.18
2010 2842 3.960571 AGCAGTAATGAAATGGAGTGCT 58.039 40.909 0.00 0.00 42.03 4.40
2026 2861 6.403866 TGGAAACAAATGACATTAAGCAGT 57.596 33.333 0.00 0.00 37.44 4.40
2080 2917 1.537202 GGACACCTGAACAAGCATGAC 59.463 52.381 0.00 0.00 0.00 3.06
2091 2928 1.071987 CTGCAAGCTGGACACCTGA 59.928 57.895 0.00 0.00 0.00 3.86
2149 2986 9.757227 GTAGCCTTCCAGATCATATGAATATAC 57.243 37.037 9.99 0.00 0.00 1.47
2170 3009 6.765512 AGAAATCAAGATTAGCAAGAGTAGCC 59.234 38.462 0.00 0.00 0.00 3.93
2173 3012 8.543774 AGGAAGAAATCAAGATTAGCAAGAGTA 58.456 33.333 0.00 0.00 0.00 2.59
2256 3095 2.627515 TCAGTATTCTGCCAGGATGC 57.372 50.000 0.00 0.00 41.10 3.91
2265 3104 4.101585 TCAACCCTAGCCATCAGTATTCTG 59.898 45.833 0.00 0.00 42.54 3.02
2292 3131 4.495422 AGAAGTACTGTACCTTTGATGCG 58.505 43.478 14.05 0.00 0.00 4.73
2355 3194 9.563748 TTTCTAGCCTTTTAAAGTGCTTAGTTA 57.436 29.630 19.83 6.68 36.72 2.24
2372 3218 6.898521 ACACTTCTCTAGGTTATTTCTAGCCT 59.101 38.462 0.00 0.00 41.12 4.58
2375 3221 8.211116 TCGACACTTCTCTAGGTTATTTCTAG 57.789 38.462 0.00 0.00 36.46 2.43
2377 3223 7.122948 ACATCGACACTTCTCTAGGTTATTTCT 59.877 37.037 0.00 0.00 0.00 2.52
2396 3269 5.725110 ATAAACTGAAGATGCACATCGAC 57.275 39.130 5.04 4.52 42.48 4.20
2423 3298 2.668279 GCTGGCAATAACAAACAGGACG 60.668 50.000 0.00 0.00 0.00 4.79
2446 3321 4.625963 ACCTCCTGTATTTCTAGCCTTCT 58.374 43.478 0.00 0.00 0.00 2.85
2527 3408 9.511272 AGCAATGCAATTCAGTATATTATCAGA 57.489 29.630 8.35 0.00 31.22 3.27
2547 3428 9.495754 GCTTGAGAAACTAATAAGTTAGCAATG 57.504 33.333 5.52 0.00 45.37 2.82
2566 3555 0.109153 ATGCACACCACTGCTTGAGA 59.891 50.000 0.00 0.00 38.07 3.27
2840 3830 6.478588 CCATATCAACTGAACTTTTAGCGAC 58.521 40.000 0.00 0.00 0.00 5.19
2864 3856 9.783256 ACAAAATTTTAATAGTTCGGTAGATGC 57.217 29.630 2.44 0.00 0.00 3.91
2884 4002 7.962441 AGGTAACAAAAATAGGAGCACAAAAT 58.038 30.769 0.00 0.00 41.41 1.82
2893 4011 8.215050 TCAGAAACAGAGGTAACAAAAATAGGA 58.785 33.333 0.00 0.00 41.41 2.94
2920 4039 9.261180 CCAAATATACACACTGATGTACTTAGG 57.739 37.037 0.00 0.00 37.88 2.69
2983 4105 8.576442 CCTGTAATGGTAGAACTGAAACAAAAT 58.424 33.333 0.00 0.00 0.00 1.82
2989 4111 5.012664 TCAGCCTGTAATGGTAGAACTGAAA 59.987 40.000 0.00 0.00 29.76 2.69
3089 4215 3.655486 TGAAGCATTGTTTGGAAGCATG 58.345 40.909 0.00 0.00 0.00 4.06
3304 4433 9.166173 TGTGATCATTTATCTAGAACCTTGTTG 57.834 33.333 0.00 0.00 35.45 3.33
3305 4434 9.739276 TTGTGATCATTTATCTAGAACCTTGTT 57.261 29.630 0.00 0.00 35.45 2.83
3329 4458 7.177407 GCAAATAGCATGTCAATTGTGAATTG 58.823 34.615 5.13 3.12 45.17 2.32
3381 4510 6.968131 TGATCATCTACAGTTTGCAAGTAC 57.032 37.500 0.00 0.00 0.00 2.73
3406 4535 0.109504 GAGAGTCACGAGTGTCTGGC 60.110 60.000 7.65 0.00 0.00 4.85
3407 4536 1.529226 AGAGAGTCACGAGTGTCTGG 58.471 55.000 7.65 0.00 33.67 3.86
3537 4667 5.049060 CGACACCTATGGAATCAACAAAACA 60.049 40.000 0.00 0.00 0.00 2.83
3538 4668 5.180492 TCGACACCTATGGAATCAACAAAAC 59.820 40.000 0.00 0.00 0.00 2.43
3539 4669 5.309638 TCGACACCTATGGAATCAACAAAA 58.690 37.500 0.00 0.00 0.00 2.44
3543 4674 4.755411 TCTTCGACACCTATGGAATCAAC 58.245 43.478 0.00 0.00 0.00 3.18
3545 4676 3.384789 CCTCTTCGACACCTATGGAATCA 59.615 47.826 0.00 0.00 0.00 2.57
3546 4677 3.637229 TCCTCTTCGACACCTATGGAATC 59.363 47.826 0.00 0.00 0.00 2.52
3547 4678 3.643237 TCCTCTTCGACACCTATGGAAT 58.357 45.455 0.00 0.00 0.00 3.01
3548 4679 3.095912 TCCTCTTCGACACCTATGGAA 57.904 47.619 0.00 0.00 0.00 3.53
3549 4680 2.820728 TCCTCTTCGACACCTATGGA 57.179 50.000 0.00 0.00 0.00 3.41
3550 4681 3.005261 CAGATCCTCTTCGACACCTATGG 59.995 52.174 0.00 0.00 0.00 2.74
3610 4741 6.761714 TGTCTTGTGAACTTAAAGAGAGGTTC 59.238 38.462 0.00 0.00 38.64 3.62
3758 4889 5.671493 ACAAGGTCCCAATATAAGAGAACG 58.329 41.667 0.00 0.00 0.00 3.95
3768 4899 5.319043 GGGATATCAACAAGGTCCCAATA 57.681 43.478 4.83 0.00 46.28 1.90
3866 4999 3.123621 GTCTGCTCACAAAATACGTCAGG 59.876 47.826 0.00 0.00 0.00 3.86
3873 5006 6.349280 GCAAAGTATGGTCTGCTCACAAAATA 60.349 38.462 0.00 0.00 0.00 1.40
4043 5178 3.058914 CACTTTTACTTCCACGGCAGAAG 60.059 47.826 9.10 9.10 45.12 2.85
4119 5254 7.158697 ACCAAAAGAATAAAATTGCACCCTAC 58.841 34.615 0.00 0.00 0.00 3.18
4121 5256 6.186420 ACCAAAAGAATAAAATTGCACCCT 57.814 33.333 0.00 0.00 0.00 4.34
4137 5272 8.335532 TGAAAGAGTCCACATAATACCAAAAG 57.664 34.615 0.00 0.00 0.00 2.27
4298 5457 3.886505 ACGTAAAGGTTGATTGGCTTTCA 59.113 39.130 0.00 0.00 0.00 2.69
4388 5547 7.277539 CACAGAGTTTATTTTGCAAACCTTGAA 59.722 33.333 12.39 0.00 36.71 2.69
4404 5563 6.935741 AGCAACAATGTAACACAGAGTTTA 57.064 33.333 0.00 0.00 41.64 2.01
4410 5569 8.113675 GGTTTTTAAAGCAACAATGTAACACAG 58.886 33.333 5.40 0.00 36.47 3.66
4443 5602 3.056536 CACACAGTCAGGCATGTAGTAGT 60.057 47.826 0.00 0.00 0.00 2.73
4460 5619 0.969917 ACAAGCAAAGGCCACACACA 60.970 50.000 5.01 0.00 42.56 3.72
4461 5620 1.001378 CTACAAGCAAAGGCCACACAC 60.001 52.381 5.01 0.00 42.56 3.82
4462 5621 1.317613 CTACAAGCAAAGGCCACACA 58.682 50.000 5.01 0.00 42.56 3.72
4463 5622 1.001378 CACTACAAGCAAAGGCCACAC 60.001 52.381 5.01 0.00 42.56 3.82
4665 5824 3.658398 CTGCAAGGTCCCATCACTT 57.342 52.632 0.00 0.00 0.00 3.16
4917 6076 5.533482 GAGTACTTTCTGTTCTTCTGCTGA 58.467 41.667 0.00 0.00 0.00 4.26
5017 6177 9.098355 CACTTCTCTATGATTTGAATTCCGTAA 57.902 33.333 2.27 0.00 0.00 3.18
5106 6266 1.303309 GAAGTGCACAGTGAGCAACT 58.697 50.000 21.04 13.05 44.64 3.16
5116 6276 1.271001 CCACCTCTGATGAAGTGCACA 60.271 52.381 21.04 0.00 34.27 4.57
5238 6398 5.939764 AGGTCATCATGCTTCTGTAAGTA 57.060 39.130 0.00 0.00 34.99 2.24
5244 6404 3.875727 CAGGTTAGGTCATCATGCTTCTG 59.124 47.826 0.00 0.00 0.00 3.02
5264 6424 3.266510 TGAGCCTATAACAAGGTGCAG 57.733 47.619 0.00 0.00 39.02 4.41
5339 6501 0.248289 ATCAAATGGGCAGCAACAGC 59.752 50.000 0.00 0.00 0.00 4.40
5378 6540 6.349300 AGTCGCAATACTTCAGGATTAACAT 58.651 36.000 0.00 0.00 0.00 2.71
5389 6551 5.961395 TCCGATAAAAGTCGCAATACTTC 57.039 39.130 0.00 0.00 38.76 3.01
5394 6556 7.542477 CAGAGTATATCCGATAAAAGTCGCAAT 59.458 37.037 0.00 0.00 40.17 3.56
5413 6576 9.698309 CAAATTTCGATACCATAGACAGAGTAT 57.302 33.333 0.00 0.00 0.00 2.12
5504 6667 1.014044 TGCTCGACAATTCGCCAGTC 61.014 55.000 0.00 0.00 45.46 3.51
5551 6717 4.082354 GCAGAGAAAATGCAGGAATCACTT 60.082 41.667 0.00 0.00 43.31 3.16
5701 6867 9.661563 ATACCTGTGTATATCGAAAGAAAAACA 57.338 29.630 0.00 0.00 35.89 2.83
5733 6900 5.491070 GCTTGTGGCTGTCCATATATCATA 58.509 41.667 0.00 0.00 45.62 2.15
5750 6917 3.976793 ATTGTGAGTTGTGAGCTTGTG 57.023 42.857 0.00 0.00 0.00 3.33
5751 6918 6.639632 AATAATTGTGAGTTGTGAGCTTGT 57.360 33.333 0.00 0.00 0.00 3.16
5752 6919 8.239314 ACATAATAATTGTGAGTTGTGAGCTTG 58.761 33.333 0.00 0.00 0.00 4.01
5753 6920 8.340618 ACATAATAATTGTGAGTTGTGAGCTT 57.659 30.769 0.00 0.00 0.00 3.74
5754 6921 7.928307 ACATAATAATTGTGAGTTGTGAGCT 57.072 32.000 0.00 0.00 0.00 4.09
5755 6922 8.664798 TGTACATAATAATTGTGAGTTGTGAGC 58.335 33.333 0.00 0.00 0.00 4.26
5782 6949 3.632604 GTCGACACAAGAGATGGAGGATA 59.367 47.826 11.55 0.00 0.00 2.59
5801 6968 2.463620 CGGGTGTGCCATCATGTCG 61.464 63.158 0.00 0.00 36.17 4.35
5802 6969 0.676466 TTCGGGTGTGCCATCATGTC 60.676 55.000 0.00 0.00 36.17 3.06
5818 6985 0.179189 GGATGCGGTTTTGAGCTTCG 60.179 55.000 0.00 0.00 38.10 3.79
5847 7014 0.615331 ATGGACATCAGCCGTCAAGT 59.385 50.000 0.00 0.00 34.97 3.16
5855 7026 3.406764 GGGAACAGATATGGACATCAGC 58.593 50.000 0.00 0.00 0.00 4.26
6007 7178 5.850557 TGAAGTTTCTTGCTGAAATGGAA 57.149 34.783 8.28 0.00 45.19 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.