Multiple sequence alignment - TraesCS1A01G378000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G378000 chr1A 100.000 4314 0 0 1 4314 550973162 550968849 0.000000e+00 7967.0
1 TraesCS1A01G378000 chr1A 92.262 168 12 1 2316 2483 15539992 15540158 2.010000e-58 237.0
2 TraesCS1A01G378000 chr1A 81.301 123 17 5 476 597 579533018 579532901 1.280000e-15 95.3
3 TraesCS1A01G378000 chr1A 81.301 123 17 5 476 597 579552154 579552037 1.280000e-15 95.3
4 TraesCS1A01G378000 chr1B 91.947 1726 86 23 641 2323 629943080 629941365 0.000000e+00 2368.0
5 TraesCS1A01G378000 chr1B 85.830 741 42 19 3635 4314 629939296 629938558 0.000000e+00 728.0
6 TraesCS1A01G378000 chr1B 87.435 581 33 23 2931 3481 629940846 629940276 2.190000e-177 632.0
7 TraesCS1A01G378000 chr1B 89.116 441 43 3 1 438 629944688 629944250 1.060000e-150 544.0
8 TraesCS1A01G378000 chr1B 82.484 314 42 9 3083 3388 601488715 601488407 3.310000e-66 263.0
9 TraesCS1A01G378000 chr1D 95.120 1086 44 7 1176 2259 458486192 458485114 0.000000e+00 1703.0
10 TraesCS1A01G378000 chr1D 84.642 853 43 36 3529 4314 458483411 458482580 0.000000e+00 769.0
11 TraesCS1A01G378000 chr1D 95.285 403 14 3 2981 3379 458484227 458483826 6.090000e-178 634.0
12 TraesCS1A01G378000 chr1D 87.713 529 28 19 668 1167 458487104 458486584 2.240000e-162 582.0
13 TraesCS1A01G378000 chr1D 79.694 458 67 14 2484 2928 458485069 458484625 1.510000e-79 307.0
14 TraesCS1A01G378000 chr1D 90.909 176 15 1 2322 2497 427826921 427827095 7.210000e-58 235.0
15 TraesCS1A01G378000 chr3A 85.164 856 119 7 1106 1960 487855117 487854269 0.000000e+00 870.0
16 TraesCS1A01G378000 chr3D 84.597 857 122 9 1106 1960 365906973 365906125 0.000000e+00 843.0
17 TraesCS1A01G378000 chr3D 93.827 162 10 0 2322 2483 238999575 238999414 1.200000e-60 244.0
18 TraesCS1A01G378000 chr3B 84.579 856 124 7 1106 1960 476946189 476945341 0.000000e+00 843.0
19 TraesCS1A01G378000 chr4B 92.614 176 11 2 2315 2488 63754011 63753836 7.160000e-63 252.0
20 TraesCS1A01G378000 chr4B 93.373 166 10 1 2318 2483 483266376 483266540 1.200000e-60 244.0
21 TraesCS1A01G378000 chr5D 93.827 162 10 0 2322 2483 46310893 46311054 1.200000e-60 244.0
22 TraesCS1A01G378000 chr6B 90.323 186 16 2 2314 2499 120647851 120647668 4.310000e-60 243.0
23 TraesCS1A01G378000 chr6B 90.960 177 16 0 2322 2498 699977610 699977434 5.580000e-59 239.0
24 TraesCS1A01G378000 chrUn 92.262 168 13 0 2319 2486 31220493 31220660 5.580000e-59 239.0
25 TraesCS1A01G378000 chrUn 81.301 123 17 5 476 597 303756303 303756186 1.280000e-15 95.3
26 TraesCS1A01G378000 chr2D 86.957 115 11 4 485 597 13686507 13686619 4.530000e-25 126.0
27 TraesCS1A01G378000 chr7A 83.582 134 17 5 478 609 184119368 184119238 2.110000e-23 121.0
28 TraesCS1A01G378000 chr7A 80.952 126 18 6 475 598 232026424 232026303 1.280000e-15 95.3
29 TraesCS1A01G378000 chr7A 80.469 128 21 4 476 602 450374737 450374861 1.280000e-15 95.3
30 TraesCS1A01G378000 chr4A 86.111 108 12 3 476 582 16505086 16504981 3.530000e-21 113.0
31 TraesCS1A01G378000 chr6D 81.395 129 15 8 475 600 78706167 78706289 3.550000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G378000 chr1A 550968849 550973162 4313 True 7967 7967 100.0000 1 4314 1 chr1A.!!$R1 4313
1 TraesCS1A01G378000 chr1B 629938558 629944688 6130 True 1068 2368 88.5820 1 4314 4 chr1B.!!$R2 4313
2 TraesCS1A01G378000 chr1D 458482580 458487104 4524 True 799 1703 88.4908 668 4314 5 chr1D.!!$R1 3646
3 TraesCS1A01G378000 chr3A 487854269 487855117 848 True 870 870 85.1640 1106 1960 1 chr3A.!!$R1 854
4 TraesCS1A01G378000 chr3D 365906125 365906973 848 True 843 843 84.5970 1106 1960 1 chr3D.!!$R2 854
5 TraesCS1A01G378000 chr3B 476945341 476946189 848 True 843 843 84.5790 1106 1960 1 chr3B.!!$R1 854

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 409 0.321210 TAAGCGCTGCTACTGCCAAA 60.321 50.0 12.58 0.0 38.25 3.28 F
929 2005 0.463295 CATCCAAGCGCCACATCTCT 60.463 55.0 2.29 0.0 0.00 3.10 F
2084 3556 0.456653 GGCCAATCACAACATGACGC 60.457 55.0 0.00 0.0 41.24 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 3545 0.179004 TTCAAGGGGCGTCATGTTGT 60.179 50.0 0.0 0.0 0.00 3.32 R
2513 3996 0.243907 AGTGTACGACAAGCGAGCAT 59.756 50.0 0.0 0.0 44.57 3.79 R
3602 6079 0.179020 TTGTGCAGCCTACACTTGCT 60.179 50.0 0.0 0.0 38.86 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.665559 TGCCTAGTCTCATAAAGAAACACAATT 59.334 33.333 0.00 0.00 35.21 2.32
66 67 2.009774 CAATTTCGAGGGAATGCGACT 58.990 47.619 0.00 0.00 36.11 4.18
68 69 1.019278 TTTCGAGGGAATGCGACTGC 61.019 55.000 0.00 0.00 43.20 4.40
87 88 1.856014 GCAACAAAGTCACGAGCACAC 60.856 52.381 0.00 0.00 0.00 3.82
89 90 1.151777 ACAAAGTCACGAGCACACGG 61.152 55.000 0.00 0.00 37.61 4.94
91 92 0.874607 AAAGTCACGAGCACACGGAC 60.875 55.000 0.00 0.00 37.61 4.79
142 143 4.655762 TGAGTAGATTCATTGGTCTCGG 57.344 45.455 0.00 0.00 0.00 4.63
144 145 4.142160 TGAGTAGATTCATTGGTCTCGGTG 60.142 45.833 0.00 0.00 0.00 4.94
146 147 1.017387 GATTCATTGGTCTCGGTGGC 58.983 55.000 0.00 0.00 0.00 5.01
148 149 3.499737 CATTGGTCTCGGTGGCGC 61.500 66.667 0.00 0.00 0.00 6.53
168 169 3.736224 CTGCTGGGAGGCCACCAT 61.736 66.667 21.72 0.00 37.38 3.55
173 174 1.507140 CTGGGAGGCCACCATTACTA 58.493 55.000 21.72 0.00 37.38 1.82
212 215 4.930963 TGTTGTGTAATTGAGTTGCCTTG 58.069 39.130 0.00 0.00 0.00 3.61
220 223 1.140312 TGAGTTGCCTTGGTCCTCTT 58.860 50.000 0.00 0.00 0.00 2.85
242 245 2.737252 GAGGTCTTGTTTAGGCAACGAG 59.263 50.000 0.00 0.00 45.47 4.18
250 253 1.317431 TTAGGCAACGAGCTAGGCGA 61.317 55.000 0.00 0.00 44.79 5.54
301 304 1.059098 TGATTGTCAGCACCTCCACT 58.941 50.000 0.00 0.00 0.00 4.00
319 322 0.396811 CTTGAACGGGGAGGAACACT 59.603 55.000 0.00 0.00 0.00 3.55
333 336 3.452627 AGGAACACTCGAGGAAGCATTAT 59.547 43.478 18.41 0.00 0.00 1.28
397 400 6.155827 TCAACATTTAAAATTAAGCGCTGCT 58.844 32.000 12.58 0.00 42.56 4.24
401 404 6.747280 ACATTTAAAATTAAGCGCTGCTACTG 59.253 34.615 12.58 1.34 38.25 2.74
406 409 0.321210 TAAGCGCTGCTACTGCCAAA 60.321 50.000 12.58 0.00 38.25 3.28
407 410 1.856265 AAGCGCTGCTACTGCCAAAC 61.856 55.000 12.58 0.00 38.25 2.93
422 425 3.826157 TGCCAAACTTTTCTGATAGGGTG 59.174 43.478 0.00 0.00 0.00 4.61
430 433 3.398318 TTCTGATAGGGTGTGGCTAGA 57.602 47.619 0.00 0.00 0.00 2.43
431 434 3.619900 TCTGATAGGGTGTGGCTAGAT 57.380 47.619 0.00 0.00 0.00 1.98
432 435 3.501349 TCTGATAGGGTGTGGCTAGATC 58.499 50.000 0.00 0.00 0.00 2.75
433 436 3.141083 TCTGATAGGGTGTGGCTAGATCT 59.859 47.826 0.00 0.00 0.00 2.75
434 437 3.501349 TGATAGGGTGTGGCTAGATCTC 58.499 50.000 0.00 0.00 0.00 2.75
435 438 3.117131 TGATAGGGTGTGGCTAGATCTCA 60.117 47.826 0.00 0.00 0.00 3.27
436 439 1.786937 AGGGTGTGGCTAGATCTCAG 58.213 55.000 0.00 0.00 0.00 3.35
437 440 1.007721 AGGGTGTGGCTAGATCTCAGT 59.992 52.381 0.00 0.00 0.00 3.41
438 441 2.245028 AGGGTGTGGCTAGATCTCAGTA 59.755 50.000 0.00 0.00 0.00 2.74
439 442 2.625790 GGGTGTGGCTAGATCTCAGTAG 59.374 54.545 0.00 0.00 0.00 2.57
440 443 3.556999 GGTGTGGCTAGATCTCAGTAGA 58.443 50.000 0.00 0.00 35.80 2.59
441 444 3.316868 GGTGTGGCTAGATCTCAGTAGAC 59.683 52.174 0.00 0.00 33.57 2.59
442 445 4.204012 GTGTGGCTAGATCTCAGTAGACT 58.796 47.826 0.00 0.00 33.57 3.24
443 446 4.274950 GTGTGGCTAGATCTCAGTAGACTC 59.725 50.000 0.00 0.00 33.57 3.36
444 447 4.080299 TGTGGCTAGATCTCAGTAGACTCA 60.080 45.833 0.00 0.00 33.57 3.41
445 448 4.515191 GTGGCTAGATCTCAGTAGACTCAG 59.485 50.000 0.00 0.00 33.57 3.35
446 449 4.410555 TGGCTAGATCTCAGTAGACTCAGA 59.589 45.833 0.00 0.00 33.57 3.27
447 450 4.755123 GGCTAGATCTCAGTAGACTCAGAC 59.245 50.000 0.00 0.00 33.57 3.51
448 451 5.454755 GGCTAGATCTCAGTAGACTCAGACT 60.455 48.000 0.00 0.00 33.57 3.24
449 452 6.055588 GCTAGATCTCAGTAGACTCAGACTT 58.944 44.000 0.00 0.00 33.57 3.01
450 453 7.214381 GCTAGATCTCAGTAGACTCAGACTTA 58.786 42.308 0.00 0.00 33.57 2.24
451 454 7.170998 GCTAGATCTCAGTAGACTCAGACTTAC 59.829 44.444 0.00 0.00 33.57 2.34
452 455 6.354130 AGATCTCAGTAGACTCAGACTTACC 58.646 44.000 0.00 0.00 33.57 2.85
453 456 4.846040 TCTCAGTAGACTCAGACTTACCC 58.154 47.826 0.00 0.00 0.00 3.69
454 457 4.288887 TCTCAGTAGACTCAGACTTACCCA 59.711 45.833 0.00 0.00 0.00 4.51
455 458 4.994282 TCAGTAGACTCAGACTTACCCAA 58.006 43.478 0.00 0.00 0.00 4.12
456 459 5.010933 TCAGTAGACTCAGACTTACCCAAG 58.989 45.833 0.00 0.00 37.81 3.61
467 470 4.838904 ACTTACCCAAGTCTAATCCCAC 57.161 45.455 0.00 0.00 41.25 4.61
468 471 4.172807 ACTTACCCAAGTCTAATCCCACA 58.827 43.478 0.00 0.00 41.25 4.17
469 472 4.600111 ACTTACCCAAGTCTAATCCCACAA 59.400 41.667 0.00 0.00 41.25 3.33
470 473 5.073965 ACTTACCCAAGTCTAATCCCACAAA 59.926 40.000 0.00 0.00 41.25 2.83
471 474 4.463050 ACCCAAGTCTAATCCCACAAAA 57.537 40.909 0.00 0.00 0.00 2.44
472 475 4.810345 ACCCAAGTCTAATCCCACAAAAA 58.190 39.130 0.00 0.00 0.00 1.94
577 580 4.819105 TCTCCACGTAAGATCCACAAAT 57.181 40.909 0.00 0.00 43.62 2.32
589 592 5.482908 AGATCCACAAATATAGCATCGACC 58.517 41.667 0.00 0.00 0.00 4.79
598 601 5.804692 ATATAGCATCGACCGAGACTTAG 57.195 43.478 0.00 0.00 0.00 2.18
606 609 1.480954 GACCGAGACTTAGCAATCCCA 59.519 52.381 0.00 0.00 0.00 4.37
610 613 3.561725 CCGAGACTTAGCAATCCCATTTC 59.438 47.826 0.00 0.00 0.00 2.17
615 618 7.872993 CGAGACTTAGCAATCCCATTTCTAATA 59.127 37.037 0.00 0.00 0.00 0.98
625 628 9.918630 CAATCCCATTTCTAATAATGTGGATTC 57.081 33.333 18.63 0.00 43.82 2.52
694 1724 6.712095 ACATGTATAAAATCATCACATCGCCT 59.288 34.615 0.00 0.00 0.00 5.52
788 1823 5.523552 TCACATAGCAGAACAATAACATCGG 59.476 40.000 0.00 0.00 0.00 4.18
791 1826 6.597672 ACATAGCAGAACAATAACATCGGAAA 59.402 34.615 0.00 0.00 0.00 3.13
793 1828 4.156008 AGCAGAACAATAACATCGGAAACC 59.844 41.667 0.00 0.00 0.00 3.27
794 1829 4.083003 GCAGAACAATAACATCGGAAACCA 60.083 41.667 0.00 0.00 0.00 3.67
795 1830 5.390613 CAGAACAATAACATCGGAAACCAC 58.609 41.667 0.00 0.00 0.00 4.16
796 1831 5.049060 CAGAACAATAACATCGGAAACCACA 60.049 40.000 0.00 0.00 0.00 4.17
798 1833 3.504520 ACAATAACATCGGAAACCACACC 59.495 43.478 0.00 0.00 0.00 4.16
799 1834 3.713826 ATAACATCGGAAACCACACCT 57.286 42.857 0.00 0.00 0.00 4.00
824 1871 7.581213 TTTTTCCACGCCTAAATCATATCAT 57.419 32.000 0.00 0.00 0.00 2.45
825 1872 8.684386 TTTTTCCACGCCTAAATCATATCATA 57.316 30.769 0.00 0.00 0.00 2.15
831 1878 8.820933 CCACGCCTAAATCATATCATAATGTAG 58.179 37.037 0.00 0.00 0.00 2.74
877 1953 9.620259 ATCCATTTTAGAGGAAAAGACTATCAC 57.380 33.333 0.00 0.00 40.34 3.06
929 2005 0.463295 CATCCAAGCGCCACATCTCT 60.463 55.000 2.29 0.00 0.00 3.10
1013 2089 1.553417 CCTCTTCTCTCCCAACCCTCA 60.553 57.143 0.00 0.00 0.00 3.86
1092 2181 2.584418 CATGCAGGAGTCGCTCGG 60.584 66.667 0.00 0.00 0.00 4.63
1765 3237 4.681978 GGCAAGGACGGCGTCACT 62.682 66.667 37.13 28.19 33.68 3.41
1864 3336 1.293498 CAACCGCTACTGGCTCTGT 59.707 57.895 0.00 0.00 39.13 3.41
2064 3536 7.015584 GGATATTTGCTGGGATAGTTCCATTTT 59.984 37.037 0.00 0.00 44.60 1.82
2073 3545 4.405358 GGATAGTTCCATTTTGGCCAATCA 59.595 41.667 21.26 9.89 42.12 2.57
2074 3546 3.683365 AGTTCCATTTTGGCCAATCAC 57.317 42.857 21.26 9.73 37.47 3.06
2084 3556 0.456653 GGCCAATCACAACATGACGC 60.457 55.000 0.00 0.00 41.24 5.19
2085 3557 0.456653 GCCAATCACAACATGACGCC 60.457 55.000 0.00 0.00 41.24 5.68
2105 3577 3.319122 GCCCCTTGAAATTATGCAGTAGG 59.681 47.826 0.00 0.00 0.00 3.18
2113 3585 8.450578 TTGAAATTATGCAGTAGGGTATCTTG 57.549 34.615 0.00 0.00 0.00 3.02
2135 3607 4.142988 TGCTAGTTAATTGTACTGCGCAAC 60.143 41.667 13.05 8.67 33.47 4.17
2198 3674 6.266103 ACATTGTGATGAAAGTGGAAGTGATT 59.734 34.615 0.00 0.00 36.73 2.57
2259 3735 3.634504 TCATAATGTGATTGGCTTGGCT 58.365 40.909 0.00 0.00 0.00 4.75
2260 3736 4.025360 TCATAATGTGATTGGCTTGGCTT 58.975 39.130 0.00 0.00 0.00 4.35
2261 3737 5.199723 TCATAATGTGATTGGCTTGGCTTA 58.800 37.500 0.00 0.00 0.00 3.09
2267 3750 0.533951 ATTGGCTTGGCTTAGCTTGC 59.466 50.000 3.59 6.16 40.99 4.01
2284 3767 4.309933 GCTTGCCTTAAAAGCTTTCATGT 58.690 39.130 13.10 0.00 45.31 3.21
2285 3768 4.751600 GCTTGCCTTAAAAGCTTTCATGTT 59.248 37.500 13.10 0.00 45.31 2.71
2286 3769 5.107337 GCTTGCCTTAAAAGCTTTCATGTTC 60.107 40.000 13.10 1.64 45.31 3.18
2290 3773 6.701400 TGCCTTAAAAGCTTTCATGTTCTTTC 59.299 34.615 13.10 0.00 0.00 2.62
2308 3791 5.668471 TCTTTCTGCTCACATGAATCTAGG 58.332 41.667 0.00 0.00 0.00 3.02
2316 3799 5.738909 CTCACATGAATCTAGGGTTGAACT 58.261 41.667 0.00 0.00 0.00 3.01
2318 3801 7.252612 TCACATGAATCTAGGGTTGAACTTA 57.747 36.000 0.00 0.00 0.00 2.24
2321 3804 8.960591 CACATGAATCTAGGGTTGAACTTAATT 58.039 33.333 0.00 0.00 0.00 1.40
2325 3808 9.886132 TGAATCTAGGGTTGAACTTAATTACTC 57.114 33.333 0.00 0.00 0.00 2.59
2326 3809 9.327628 GAATCTAGGGTTGAACTTAATTACTCC 57.672 37.037 0.00 0.00 0.00 3.85
2327 3810 8.625467 ATCTAGGGTTGAACTTAATTACTCCT 57.375 34.615 0.00 0.00 0.00 3.69
2328 3811 8.445361 TCTAGGGTTGAACTTAATTACTCCTT 57.555 34.615 0.00 0.00 0.00 3.36
2329 3812 8.537858 TCTAGGGTTGAACTTAATTACTCCTTC 58.462 37.037 0.00 0.00 0.00 3.46
2330 3813 6.482524 AGGGTTGAACTTAATTACTCCTTCC 58.517 40.000 0.00 0.00 0.00 3.46
2331 3814 5.353400 GGGTTGAACTTAATTACTCCTTCCG 59.647 44.000 0.00 0.00 0.00 4.30
2332 3815 5.936372 GGTTGAACTTAATTACTCCTTCCGT 59.064 40.000 0.00 0.00 0.00 4.69
2333 3816 6.429078 GGTTGAACTTAATTACTCCTTCCGTT 59.571 38.462 0.00 0.00 0.00 4.44
2334 3817 7.040892 GGTTGAACTTAATTACTCCTTCCGTTT 60.041 37.037 0.00 0.00 0.00 3.60
2335 3818 7.662604 TGAACTTAATTACTCCTTCCGTTTC 57.337 36.000 0.00 0.00 0.00 2.78
2336 3819 7.447594 TGAACTTAATTACTCCTTCCGTTTCT 58.552 34.615 0.00 0.00 0.00 2.52
2337 3820 8.587608 TGAACTTAATTACTCCTTCCGTTTCTA 58.412 33.333 0.00 0.00 0.00 2.10
2338 3821 9.428097 GAACTTAATTACTCCTTCCGTTTCTAA 57.572 33.333 0.00 0.00 0.00 2.10
2339 3822 9.783081 AACTTAATTACTCCTTCCGTTTCTAAA 57.217 29.630 0.00 0.00 0.00 1.85
2340 3823 9.955102 ACTTAATTACTCCTTCCGTTTCTAAAT 57.045 29.630 0.00 0.00 0.00 1.40
2348 3831 8.979534 ACTCCTTCCGTTTCTAAATATAAGTCT 58.020 33.333 0.00 0.00 0.00 3.24
2349 3832 9.819267 CTCCTTCCGTTTCTAAATATAAGTCTT 57.181 33.333 0.00 0.00 0.00 3.01
2365 3848 5.825593 AAGTCTTTGTAGAGATTCCACCA 57.174 39.130 0.00 0.00 0.00 4.17
2366 3849 6.380079 AAGTCTTTGTAGAGATTCCACCAT 57.620 37.500 0.00 0.00 0.00 3.55
2367 3850 5.738909 AGTCTTTGTAGAGATTCCACCATG 58.261 41.667 0.00 0.00 0.00 3.66
2368 3851 4.878397 GTCTTTGTAGAGATTCCACCATGG 59.122 45.833 11.19 11.19 39.43 3.66
2369 3852 4.782691 TCTTTGTAGAGATTCCACCATGGA 59.217 41.667 21.47 0.00 46.61 3.41
2381 3864 5.551305 TCCACCATGGACTACATATGAAG 57.449 43.478 21.47 0.00 42.67 3.02
2382 3865 4.067896 CCACCATGGACTACATATGAAGC 58.932 47.826 21.47 0.00 40.96 3.86
2383 3866 4.444733 CCACCATGGACTACATATGAAGCA 60.445 45.833 21.47 0.00 40.96 3.91
2384 3867 5.125356 CACCATGGACTACATATGAAGCAA 58.875 41.667 21.47 0.00 37.84 3.91
2385 3868 5.589855 CACCATGGACTACATATGAAGCAAA 59.410 40.000 21.47 0.00 37.84 3.68
2386 3869 6.095300 CACCATGGACTACATATGAAGCAAAA 59.905 38.462 21.47 0.00 37.84 2.44
2387 3870 6.835488 ACCATGGACTACATATGAAGCAAAAT 59.165 34.615 21.47 0.00 37.84 1.82
2388 3871 7.143340 CCATGGACTACATATGAAGCAAAATG 58.857 38.462 5.56 5.10 37.84 2.32
2389 3872 7.013559 CCATGGACTACATATGAAGCAAAATGA 59.986 37.037 5.56 0.00 37.84 2.57
2390 3873 7.558161 TGGACTACATATGAAGCAAAATGAG 57.442 36.000 10.38 0.00 0.00 2.90
2391 3874 7.112122 TGGACTACATATGAAGCAAAATGAGT 58.888 34.615 10.38 0.00 0.00 3.41
2392 3875 7.066163 TGGACTACATATGAAGCAAAATGAGTG 59.934 37.037 10.38 0.00 0.00 3.51
2393 3876 7.280876 GGACTACATATGAAGCAAAATGAGTGA 59.719 37.037 10.38 0.00 0.00 3.41
2394 3877 8.565896 ACTACATATGAAGCAAAATGAGTGAA 57.434 30.769 10.38 0.00 0.00 3.18
2395 3878 9.182214 ACTACATATGAAGCAAAATGAGTGAAT 57.818 29.630 10.38 0.00 0.00 2.57
2401 3884 7.928908 TGAAGCAAAATGAGTGAATTTACAC 57.071 32.000 2.93 0.00 40.60 2.90
2415 3898 9.236006 AGTGAATTTACACTCTAAAATGCATCT 57.764 29.630 0.00 0.00 46.36 2.90
2424 3907 9.265901 ACACTCTAAAATGCATCTACATACATC 57.734 33.333 0.00 0.00 0.00 3.06
2425 3908 9.264719 CACTCTAAAATGCATCTACATACATCA 57.735 33.333 0.00 0.00 0.00 3.07
2426 3909 9.265901 ACTCTAAAATGCATCTACATACATCAC 57.734 33.333 0.00 0.00 0.00 3.06
2427 3910 9.486497 CTCTAAAATGCATCTACATACATCACT 57.514 33.333 0.00 0.00 0.00 3.41
2432 3915 8.543862 AATGCATCTACATACATCACTATGTG 57.456 34.615 0.00 0.00 45.99 3.21
2433 3916 6.458210 TGCATCTACATACATCACTATGTGG 58.542 40.000 1.34 0.32 45.99 4.17
2434 3917 6.041979 TGCATCTACATACATCACTATGTGGT 59.958 38.462 1.34 2.93 45.99 4.16
2435 3918 6.931281 GCATCTACATACATCACTATGTGGTT 59.069 38.462 1.34 0.00 45.99 3.67
2436 3919 7.116948 GCATCTACATACATCACTATGTGGTTC 59.883 40.741 1.34 0.00 45.99 3.62
2437 3920 7.654022 TCTACATACATCACTATGTGGTTCA 57.346 36.000 1.34 0.00 45.99 3.18
2438 3921 8.250143 TCTACATACATCACTATGTGGTTCAT 57.750 34.615 1.34 0.00 45.99 2.57
2439 3922 9.362151 TCTACATACATCACTATGTGGTTCATA 57.638 33.333 1.34 0.00 45.99 2.15
2452 3935 9.469807 CTATGTGGTTCATAGTGAAATCTCTAC 57.530 37.037 6.68 0.00 46.39 2.59
2453 3936 7.239763 TGTGGTTCATAGTGAAATCTCTACA 57.760 36.000 0.00 0.00 38.22 2.74
2454 3937 7.676004 TGTGGTTCATAGTGAAATCTCTACAA 58.324 34.615 0.00 0.00 38.22 2.41
2455 3938 8.154203 TGTGGTTCATAGTGAAATCTCTACAAA 58.846 33.333 0.00 0.00 38.22 2.83
2456 3939 8.660373 GTGGTTCATAGTGAAATCTCTACAAAG 58.340 37.037 0.00 0.00 38.22 2.77
2457 3940 8.593679 TGGTTCATAGTGAAATCTCTACAAAGA 58.406 33.333 0.00 0.00 38.22 2.52
2458 3941 8.874816 GGTTCATAGTGAAATCTCTACAAAGAC 58.125 37.037 0.00 0.00 38.22 3.01
2459 3942 9.646427 GTTCATAGTGAAATCTCTACAAAGACT 57.354 33.333 0.00 0.00 38.22 3.24
2461 3944 9.645059 TCATAGTGAAATCTCTACAAAGACTTG 57.355 33.333 0.00 0.00 38.61 3.16
2472 3955 9.924650 TCTCTACAAAGACTTGTATTTAGGAAC 57.075 33.333 0.00 0.00 44.95 3.62
2473 3956 8.752766 TCTACAAAGACTTGTATTTAGGAACG 57.247 34.615 0.00 0.00 44.95 3.95
2474 3957 6.796705 ACAAAGACTTGTATTTAGGAACGG 57.203 37.500 0.00 0.00 44.14 4.44
2475 3958 6.527423 ACAAAGACTTGTATTTAGGAACGGA 58.473 36.000 0.00 0.00 44.14 4.69
2476 3959 6.649557 ACAAAGACTTGTATTTAGGAACGGAG 59.350 38.462 0.00 0.00 44.14 4.63
2477 3960 5.340439 AGACTTGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2478 3961 4.161754 AGACTTGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2479 3962 4.098894 ACTTGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2480 3963 4.161754 ACTTGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2501 3984 8.606830 AGGGAGTAGAAATTTATGTCTTGTCTT 58.393 33.333 0.00 0.00 0.00 3.01
2518 4001 9.548208 GTCTTGTCTTTATTTGTCTTTATGCTC 57.452 33.333 0.00 0.00 0.00 4.26
2525 4008 4.404507 TTTGTCTTTATGCTCGCTTGTC 57.595 40.909 0.00 0.00 0.00 3.18
2540 4023 2.864343 GCTTGTCGTACACTGAACTGTT 59.136 45.455 0.00 0.00 0.00 3.16
2541 4024 3.060473 GCTTGTCGTACACTGAACTGTTC 60.060 47.826 13.49 13.49 0.00 3.18
2569 4052 9.035890 TGGTAGATACCCTTGTGATCTATAATG 57.964 37.037 6.57 0.00 45.87 1.90
2600 4083 8.497910 ACTGTCTATGGATAGATACCATGTTT 57.502 34.615 9.84 0.00 46.05 2.83
2615 4101 4.141111 ACCATGTTTTAGTACCCTGTGGTT 60.141 41.667 0.00 0.00 44.75 3.67
2644 4130 2.095364 GCTGCTGTTCAGTTCCATCTTG 60.095 50.000 0.00 0.00 44.66 3.02
2648 4134 3.365767 GCTGTTCAGTTCCATCTTGAAGC 60.366 47.826 1.78 0.00 0.00 3.86
2664 4150 9.512435 CATCTTGAAGCTCCATAACTAAATTTG 57.488 33.333 0.00 0.00 0.00 2.32
2679 4167 6.672147 ACTAAATTTGCAAGTGTAGCAGAAG 58.328 36.000 16.81 0.00 43.75 2.85
2703 4193 4.443913 TGATGCTGTCATGTCCAATTTG 57.556 40.909 0.00 0.00 31.96 2.32
2704 4194 3.193903 TGATGCTGTCATGTCCAATTTGG 59.806 43.478 9.28 9.28 33.86 3.28
2712 4202 5.583854 TGTCATGTCCAATTTGGTTTGTTTG 59.416 36.000 14.98 6.35 39.03 2.93
2730 4220 9.063739 GTTTGTTTGTTTACAGATGTTCGTAAA 57.936 29.630 0.00 0.00 35.72 2.01
2738 4228 5.264060 ACAGATGTTCGTAAAATGTGTCG 57.736 39.130 0.00 0.00 0.00 4.35
2742 4232 7.015289 CAGATGTTCGTAAAATGTGTCGAAAT 58.985 34.615 0.00 0.00 42.36 2.17
2743 4233 7.214449 CAGATGTTCGTAAAATGTGTCGAAATC 59.786 37.037 0.00 0.00 42.36 2.17
2758 4248 8.783093 TGTGTCGAAATCATTCTTTTTAGTGAT 58.217 29.630 0.00 0.00 33.17 3.06
2763 4253 7.964559 CGAAATCATTCTTTTTAGTGATCTGCA 59.035 33.333 0.00 0.00 33.17 4.41
2777 4267 0.953727 TCTGCACACCTGAACATTGC 59.046 50.000 0.00 0.00 0.00 3.56
2807 4304 6.426937 TCTTGTTGATCCTGTTTTACTGCTAC 59.573 38.462 0.00 0.00 0.00 3.58
2884 4386 5.208463 TGTTACACTGTCTGCAATCTGTA 57.792 39.130 0.00 0.00 0.00 2.74
2928 4435 8.097038 GGATCTGCACTATTGTATTCTCCATTA 58.903 37.037 0.00 0.00 0.00 1.90
2930 4437 6.931281 TCTGCACTATTGTATTCTCCATTAGC 59.069 38.462 0.00 0.00 0.00 3.09
2932 4439 7.282585 TGCACTATTGTATTCTCCATTAGCTT 58.717 34.615 0.00 0.00 0.00 3.74
2948 4781 7.817962 TCCATTAGCTTAACAGTCTACTTGAAC 59.182 37.037 0.00 0.00 0.00 3.18
3175 5031 4.868300 AGTTTTTGACTGTTCTGAGGCACT 60.868 41.667 0.00 0.00 38.52 4.40
3177 5033 2.245159 TGACTGTTCTGAGGCACTTG 57.755 50.000 0.00 0.00 41.55 3.16
3208 5064 6.295123 CCTGGTACTTTCAGCTTGAGTTACTA 60.295 42.308 0.00 0.00 0.00 1.82
3289 5145 0.457851 TGTTTCGCACCAGGGTTTTG 59.542 50.000 0.00 0.00 0.00 2.44
3290 5146 0.874175 GTTTCGCACCAGGGTTTTGC 60.874 55.000 0.00 0.00 0.00 3.68
3360 5219 3.432933 TCGTATTTGTCTTTGCGGGTTAC 59.567 43.478 0.00 0.00 0.00 2.50
3363 5222 1.600023 TTGTCTTTGCGGGTTACTGG 58.400 50.000 0.00 0.00 0.00 4.00
3379 5238 1.199852 CTGGTTGTCGTTTGCGTTGC 61.200 55.000 0.00 0.00 39.49 4.17
3381 5240 1.942223 GTTGTCGTTTGCGTTGCCC 60.942 57.895 0.00 0.00 39.49 5.36
3385 5244 2.115911 TCGTTTGCGTTGCCCTTGT 61.116 52.632 0.00 0.00 39.49 3.16
3387 5246 1.435515 GTTTGCGTTGCCCTTGTGA 59.564 52.632 0.00 0.00 0.00 3.58
3391 5250 1.008538 GCGTTGCCCTTGTGAGTTG 60.009 57.895 0.00 0.00 0.00 3.16
3403 5276 4.440525 CCTTGTGAGTTGCTGATTGTTTGT 60.441 41.667 0.00 0.00 0.00 2.83
3413 5286 3.066621 GCTGATTGTTTGTGAACTGTGGA 59.933 43.478 0.00 0.00 36.70 4.02
3414 5287 4.790766 GCTGATTGTTTGTGAACTGTGGAG 60.791 45.833 0.00 0.00 36.70 3.86
3425 5298 3.442273 TGAACTGTGGAGTGTTGTTTTCC 59.558 43.478 0.00 0.00 30.61 3.13
3450 5325 0.823356 TCCCCTTTGTCTTGCAGCAC 60.823 55.000 0.00 0.00 0.00 4.40
3456 5331 2.849880 TTGTCTTGCAGCACTTGTTC 57.150 45.000 0.00 0.00 0.00 3.18
3457 5332 1.748950 TGTCTTGCAGCACTTGTTCA 58.251 45.000 0.00 0.00 0.00 3.18
3502 5979 5.913137 ATTCTCATCAACTTCGAGTCTCT 57.087 39.130 0.00 0.00 0.00 3.10
3505 5982 5.704888 TCTCATCAACTTCGAGTCTCTTTC 58.295 41.667 0.00 0.00 0.00 2.62
3506 5983 4.810790 TCATCAACTTCGAGTCTCTTTCC 58.189 43.478 0.00 0.00 0.00 3.13
3507 5984 4.524714 TCATCAACTTCGAGTCTCTTTCCT 59.475 41.667 0.00 0.00 0.00 3.36
3508 5985 4.506886 TCAACTTCGAGTCTCTTTCCTC 57.493 45.455 0.00 0.00 0.00 3.71
3509 5986 4.145807 TCAACTTCGAGTCTCTTTCCTCT 58.854 43.478 0.00 0.00 0.00 3.69
3511 5988 2.823154 ACTTCGAGTCTCTTTCCTCTGG 59.177 50.000 0.00 0.00 0.00 3.86
3513 5990 3.715638 TCGAGTCTCTTTCCTCTGGTA 57.284 47.619 0.00 0.00 0.00 3.25
3514 5991 4.237976 TCGAGTCTCTTTCCTCTGGTAT 57.762 45.455 0.00 0.00 0.00 2.73
3515 5992 3.948473 TCGAGTCTCTTTCCTCTGGTATG 59.052 47.826 0.00 0.00 0.00 2.39
3517 5994 4.201970 CGAGTCTCTTTCCTCTGGTATGAC 60.202 50.000 0.00 0.00 0.00 3.06
3518 5995 4.941713 AGTCTCTTTCCTCTGGTATGACT 58.058 43.478 0.00 0.00 0.00 3.41
3519 5996 4.709397 AGTCTCTTTCCTCTGGTATGACTG 59.291 45.833 0.00 0.00 32.05 3.51
3520 5997 4.464597 GTCTCTTTCCTCTGGTATGACTGT 59.535 45.833 0.00 0.00 0.00 3.55
3521 5998 4.707448 TCTCTTTCCTCTGGTATGACTGTC 59.293 45.833 0.00 0.00 0.00 3.51
3522 5999 4.416516 TCTTTCCTCTGGTATGACTGTCA 58.583 43.478 13.60 13.60 0.00 3.58
3524 6001 5.127845 TCTTTCCTCTGGTATGACTGTCATC 59.872 44.000 25.35 16.46 38.26 2.92
3525 6002 3.981212 TCCTCTGGTATGACTGTCATCA 58.019 45.455 25.35 17.08 38.26 3.07
3526 6003 3.956848 TCCTCTGGTATGACTGTCATCAG 59.043 47.826 25.35 24.19 46.18 2.90
3527 6004 3.492309 CCTCTGGTATGACTGTCATCAGC 60.492 52.174 25.35 19.52 44.77 4.26
3530 6007 2.432146 TGGTATGACTGTCATCAGCTCC 59.568 50.000 25.35 19.09 44.77 4.70
3531 6008 2.697751 GGTATGACTGTCATCAGCTCCT 59.302 50.000 25.35 4.12 44.77 3.69
3533 6010 3.540314 ATGACTGTCATCAGCTCCTTC 57.460 47.619 17.24 0.00 44.77 3.46
3534 6011 2.533916 TGACTGTCATCAGCTCCTTCT 58.466 47.619 6.36 0.00 44.77 2.85
3536 6013 2.760092 GACTGTCATCAGCTCCTTCTCT 59.240 50.000 2.24 0.00 44.77 3.10
3537 6014 3.951037 GACTGTCATCAGCTCCTTCTCTA 59.049 47.826 2.24 0.00 44.77 2.43
3570 6047 2.209838 TCTTGAGTGCGATTCGGATC 57.790 50.000 8.34 0.00 0.00 3.36
3578 6055 3.252215 AGTGCGATTCGGATCAAAACAAA 59.748 39.130 8.34 0.00 32.33 2.83
3583 6060 4.793216 CGATTCGGATCAAAACAAATGGAC 59.207 41.667 4.19 0.00 32.33 4.02
3584 6061 3.822594 TCGGATCAAAACAAATGGACG 57.177 42.857 0.00 0.00 0.00 4.79
3599 6076 2.668550 ACGGAGCCTCGTTTTGCC 60.669 61.111 0.00 0.00 40.85 4.52
3602 6079 1.964373 GGAGCCTCGTTTTGCCGAA 60.964 57.895 0.00 0.00 36.24 4.30
3603 6080 1.497722 GAGCCTCGTTTTGCCGAAG 59.502 57.895 0.00 0.00 36.24 3.79
3604 6081 2.126850 GCCTCGTTTTGCCGAAGC 60.127 61.111 0.00 0.00 37.16 3.86
3627 6104 2.154462 GTGTAGGCTGCACAATGTCTT 58.846 47.619 27.60 0.00 36.88 3.01
3628 6105 2.095567 GTGTAGGCTGCACAATGTCTTG 60.096 50.000 27.60 0.00 36.88 3.02
3637 6114 2.033801 GCACAATGTCTTGAGCACTTGT 59.966 45.455 3.41 0.00 45.07 3.16
3679 6380 3.190079 GTGAGCATCTGTCGATTAGCAA 58.810 45.455 0.00 0.00 34.92 3.91
3700 6401 7.290061 AGCAATTGCCCTCTAGTTATTGATTA 58.710 34.615 26.45 0.00 43.38 1.75
3782 6483 3.450096 TCTGACATCATCTCTGAACCCAG 59.550 47.826 0.00 0.00 41.74 4.45
3846 6564 1.469251 GCGTAATCAGTCTCTTCGCCA 60.469 52.381 0.00 0.00 36.95 5.69
3873 6594 2.046892 AAATCAGCAGCCTCGCGT 60.047 55.556 5.77 0.00 36.85 6.01
3933 6683 2.478831 CGCTCCATTTCCTTCTCTAGC 58.521 52.381 0.00 0.00 0.00 3.42
3968 6722 1.147153 CGCTCCCATTCCTTCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
3969 6723 1.341156 CGCTCCCATTCCTTCTCCCT 61.341 60.000 0.00 0.00 0.00 4.20
3970 6724 0.472044 GCTCCCATTCCTTCTCCCTC 59.528 60.000 0.00 0.00 0.00 4.30
3971 6725 0.755686 CTCCCATTCCTTCTCCCTCG 59.244 60.000 0.00 0.00 0.00 4.63
4008 6764 2.685017 ACCTGATCCCAGAGCGCA 60.685 61.111 11.47 0.00 43.02 6.09
4169 6937 2.184579 GTCCTTCTTCTCCGGCGG 59.815 66.667 22.51 22.51 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.103305 TGTTTCTTTATGAGACTAGGCAGAAAT 58.897 33.333 9.13 0.00 33.00 2.17
25 26 7.617041 ATTGTGTTTCTTTATGAGACTAGGC 57.383 36.000 0.00 0.00 33.02 3.93
35 36 7.519032 TTCCCTCGAAATTGTGTTTCTTTAT 57.481 32.000 0.00 0.00 0.00 1.40
50 51 1.447838 GCAGTCGCATTCCCTCGAA 60.448 57.895 0.00 0.00 36.41 3.71
66 67 0.376852 GTGCTCGTGACTTTGTTGCA 59.623 50.000 0.00 0.00 0.00 4.08
68 69 1.592110 CGTGTGCTCGTGACTTTGTTG 60.592 52.381 0.00 0.00 0.00 3.33
70 71 1.151777 CCGTGTGCTCGTGACTTTGT 61.152 55.000 0.00 0.00 0.00 2.83
78 79 2.335369 GACAGTCCGTGTGCTCGT 59.665 61.111 0.00 0.00 40.56 4.18
104 105 1.415659 CTCATCTAGAACTGCTGGGGG 59.584 57.143 0.00 0.00 0.00 5.40
105 106 2.114616 ACTCATCTAGAACTGCTGGGG 58.885 52.381 0.00 0.00 0.00 4.96
106 107 4.211125 TCTACTCATCTAGAACTGCTGGG 58.789 47.826 0.00 0.00 0.00 4.45
110 111 7.384660 CCAATGAATCTACTCATCTAGAACTGC 59.615 40.741 0.00 0.00 34.90 4.40
119 120 5.221342 ACCGAGACCAATGAATCTACTCATC 60.221 44.000 0.00 0.00 34.90 2.92
120 121 4.651503 ACCGAGACCAATGAATCTACTCAT 59.348 41.667 0.00 0.00 37.66 2.90
156 157 1.562475 TGTTAGTAATGGTGGCCTCCC 59.438 52.381 21.06 12.97 0.00 4.30
186 187 6.843069 GGCAACTCAATTACACAACAAAAT 57.157 33.333 0.00 0.00 0.00 1.82
220 223 2.103432 TCGTTGCCTAAACAAGACCTCA 59.897 45.455 0.00 0.00 38.84 3.86
250 253 2.291043 GGATCCGGTCAGGTGGTGT 61.291 63.158 0.00 0.00 41.99 4.16
263 266 6.071952 ACAATCAACTTGTGTTACATGGATCC 60.072 38.462 4.20 4.20 46.37 3.36
301 304 0.395312 GAGTGTTCCTCCCCGTTCAA 59.605 55.000 0.00 0.00 33.79 2.69
375 378 7.273381 CAGTAGCAGCGCTTAATTTTAAATGTT 59.727 33.333 7.50 0.00 40.44 2.71
387 390 0.321210 TTTGGCAGTAGCAGCGCTTA 60.321 50.000 7.50 0.00 44.61 3.09
391 394 0.593128 AAAGTTTGGCAGTAGCAGCG 59.407 50.000 0.00 0.00 44.61 5.18
397 400 5.222048 ACCCTATCAGAAAAGTTTGGCAGTA 60.222 40.000 0.00 0.00 0.00 2.74
401 404 3.826729 ACACCCTATCAGAAAAGTTTGGC 59.173 43.478 0.00 0.00 0.00 4.52
406 409 2.644798 AGCCACACCCTATCAGAAAAGT 59.355 45.455 0.00 0.00 0.00 2.66
407 410 3.356529 AGCCACACCCTATCAGAAAAG 57.643 47.619 0.00 0.00 0.00 2.27
422 425 4.456535 TGAGTCTACTGAGATCTAGCCAC 58.543 47.826 0.00 0.00 33.14 5.01
430 433 5.044772 TGGGTAAGTCTGAGTCTACTGAGAT 60.045 44.000 2.58 0.00 38.43 2.75
431 434 4.288887 TGGGTAAGTCTGAGTCTACTGAGA 59.711 45.833 0.00 0.00 33.86 3.27
432 435 4.590918 TGGGTAAGTCTGAGTCTACTGAG 58.409 47.826 0.26 0.00 0.00 3.35
433 436 4.652679 TGGGTAAGTCTGAGTCTACTGA 57.347 45.455 0.26 0.00 0.00 3.41
434 437 4.767928 ACTTGGGTAAGTCTGAGTCTACTG 59.232 45.833 0.26 0.00 43.53 2.74
435 438 5.000570 ACTTGGGTAAGTCTGAGTCTACT 57.999 43.478 0.00 0.00 43.53 2.57
447 450 4.837093 TGTGGGATTAGACTTGGGTAAG 57.163 45.455 0.00 0.00 39.86 2.34
448 451 5.586155 TTTGTGGGATTAGACTTGGGTAA 57.414 39.130 0.00 0.00 0.00 2.85
449 452 5.586155 TTTTGTGGGATTAGACTTGGGTA 57.414 39.130 0.00 0.00 0.00 3.69
450 453 4.463050 TTTTGTGGGATTAGACTTGGGT 57.537 40.909 0.00 0.00 0.00 4.51
477 480 6.462628 GTCACTTGACTTAGACTTGGGTAAGT 60.463 42.308 1.92 0.00 44.16 2.24
478 481 5.927115 GTCACTTGACTTAGACTTGGGTAAG 59.073 44.000 1.92 0.00 41.65 2.34
479 482 5.364446 TGTCACTTGACTTAGACTTGGGTAA 59.636 40.000 10.63 0.00 44.99 2.85
480 483 4.897076 TGTCACTTGACTTAGACTTGGGTA 59.103 41.667 10.63 0.00 44.99 3.69
481 484 3.709653 TGTCACTTGACTTAGACTTGGGT 59.290 43.478 10.63 0.00 44.99 4.51
482 485 4.336889 TGTCACTTGACTTAGACTTGGG 57.663 45.455 10.63 0.00 44.99 4.12
483 486 6.929049 TGTTATGTCACTTGACTTAGACTTGG 59.071 38.462 10.63 0.00 44.99 3.61
484 487 7.946655 TGTTATGTCACTTGACTTAGACTTG 57.053 36.000 10.63 0.00 44.99 3.16
485 488 8.150945 ACATGTTATGTCACTTGACTTAGACTT 58.849 33.333 10.63 5.90 44.99 3.01
547 550 0.604073 TTACGTGGAGATCCGTGCAA 59.396 50.000 0.00 0.00 37.91 4.08
577 580 3.436015 GCTAAGTCTCGGTCGATGCTATA 59.564 47.826 0.00 0.00 0.00 1.31
589 592 4.446371 AGAAATGGGATTGCTAAGTCTCG 58.554 43.478 0.00 0.00 0.00 4.04
598 601 7.288810 TCCACATTATTAGAAATGGGATTGC 57.711 36.000 0.48 0.00 41.87 3.56
615 618 5.136105 GCTGGGAGATTAAGAATCCACATT 58.864 41.667 5.92 0.00 38.71 2.71
631 634 6.882610 TGTGCTTAATAATATTGCTGGGAG 57.117 37.500 0.00 0.00 0.00 4.30
770 1805 4.156008 GGTTTCCGATGTTATTGTTCTGCT 59.844 41.667 0.00 0.00 0.00 4.24
771 1806 4.083003 TGGTTTCCGATGTTATTGTTCTGC 60.083 41.667 0.00 0.00 0.00 4.26
804 1839 7.394016 ACATTATGATATGATTTAGGCGTGGA 58.606 34.615 0.00 0.00 0.00 4.02
877 1953 4.659874 GCCACCGTTCGTTGCGTG 62.660 66.667 0.00 0.00 0.00 5.34
929 2005 1.340991 GGCTAGGGTTTTGCAGGATCA 60.341 52.381 0.00 0.00 0.00 2.92
1415 2887 0.611062 ACCGAGATGACGTCCTTGGA 60.611 55.000 26.20 5.18 37.39 3.53
1765 3237 1.610673 GGACAGGTCCCAGAGCAGA 60.611 63.158 7.24 0.00 43.94 4.26
1864 3336 3.749064 GACTCCTCTGTCGCGGCA 61.749 66.667 14.98 14.98 0.00 5.69
1972 3444 4.042435 AGGTTAACGATCCAGGAAAAGGAA 59.958 41.667 0.00 0.00 38.93 3.36
2064 3536 0.880441 CGTCATGTTGTGATTGGCCA 59.120 50.000 0.00 0.00 39.48 5.36
2073 3545 0.179004 TTCAAGGGGCGTCATGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
2074 3546 0.958091 TTTCAAGGGGCGTCATGTTG 59.042 50.000 0.00 0.00 0.00 3.33
2084 3556 3.891366 CCCTACTGCATAATTTCAAGGGG 59.109 47.826 0.00 0.00 39.04 4.79
2085 3557 4.536765 ACCCTACTGCATAATTTCAAGGG 58.463 43.478 2.53 2.53 46.55 3.95
2105 3577 7.306632 CGCAGTACAATTAACTAGCAAGATACC 60.307 40.741 0.00 0.00 0.00 2.73
2113 3585 4.092968 AGTTGCGCAGTACAATTAACTAGC 59.907 41.667 11.31 10.35 33.21 3.42
2135 3607 6.122850 TCGAATTATCAACAAGCCATGAAG 57.877 37.500 0.00 0.00 0.00 3.02
2239 3715 4.395959 AAGCCAAGCCAATCACATTATG 57.604 40.909 0.00 0.00 0.00 1.90
2267 3750 7.095899 GCAGAAAGAACATGAAAGCTTTTAAGG 60.096 37.037 14.05 9.33 31.30 2.69
2281 3764 5.944599 AGATTCATGTGAGCAGAAAGAACAT 59.055 36.000 0.00 0.00 31.79 2.71
2284 3767 6.111382 CCTAGATTCATGTGAGCAGAAAGAA 58.889 40.000 0.00 0.00 0.00 2.52
2285 3768 5.396101 CCCTAGATTCATGTGAGCAGAAAGA 60.396 44.000 0.00 0.00 0.00 2.52
2286 3769 4.815308 CCCTAGATTCATGTGAGCAGAAAG 59.185 45.833 0.00 0.00 0.00 2.62
2290 3773 3.834489 ACCCTAGATTCATGTGAGCAG 57.166 47.619 0.00 0.00 0.00 4.24
2308 3791 5.936372 ACGGAAGGAGTAATTAAGTTCAACC 59.064 40.000 0.00 0.00 0.00 3.77
2322 3805 8.979534 AGACTTATATTTAGAAACGGAAGGAGT 58.020 33.333 0.00 0.00 0.00 3.85
2323 3806 9.819267 AAGACTTATATTTAGAAACGGAAGGAG 57.181 33.333 0.00 0.00 0.00 3.69
2339 3822 9.213777 TGGTGGAATCTCTACAAAGACTTATAT 57.786 33.333 0.00 0.00 28.51 0.86
2340 3823 8.603898 TGGTGGAATCTCTACAAAGACTTATA 57.396 34.615 0.00 0.00 28.51 0.98
2341 3824 7.496346 TGGTGGAATCTCTACAAAGACTTAT 57.504 36.000 0.00 0.00 28.51 1.73
2342 3825 6.928348 TGGTGGAATCTCTACAAAGACTTA 57.072 37.500 0.00 0.00 28.51 2.24
2343 3826 5.825593 TGGTGGAATCTCTACAAAGACTT 57.174 39.130 0.00 0.00 28.51 3.01
2344 3827 5.338708 CCATGGTGGAATCTCTACAAAGACT 60.339 44.000 2.57 0.00 40.96 3.24
2345 3828 4.878397 CCATGGTGGAATCTCTACAAAGAC 59.122 45.833 2.57 0.00 40.96 3.01
2346 3829 4.782691 TCCATGGTGGAATCTCTACAAAGA 59.217 41.667 12.58 0.00 45.00 2.52
2347 3830 5.102953 TCCATGGTGGAATCTCTACAAAG 57.897 43.478 12.58 0.00 45.00 2.77
2359 3842 4.202357 GCTTCATATGTAGTCCATGGTGGA 60.202 45.833 12.58 0.00 45.98 4.02
2360 3843 4.067896 GCTTCATATGTAGTCCATGGTGG 58.932 47.826 12.58 0.00 39.43 4.61
2361 3844 4.707105 TGCTTCATATGTAGTCCATGGTG 58.293 43.478 12.58 0.00 34.86 4.17
2362 3845 5.372343 TTGCTTCATATGTAGTCCATGGT 57.628 39.130 12.58 0.00 34.86 3.55
2363 3846 6.698008 TTTTGCTTCATATGTAGTCCATGG 57.302 37.500 4.97 4.97 34.86 3.66
2364 3847 7.933396 TCATTTTGCTTCATATGTAGTCCATG 58.067 34.615 10.61 8.24 34.86 3.66
2365 3848 7.776969 ACTCATTTTGCTTCATATGTAGTCCAT 59.223 33.333 10.61 0.00 37.58 3.41
2366 3849 7.066163 CACTCATTTTGCTTCATATGTAGTCCA 59.934 37.037 10.61 0.00 0.00 4.02
2367 3850 7.280876 TCACTCATTTTGCTTCATATGTAGTCC 59.719 37.037 10.61 0.00 0.00 3.85
2368 3851 8.201554 TCACTCATTTTGCTTCATATGTAGTC 57.798 34.615 10.61 4.54 0.00 2.59
2369 3852 8.565896 TTCACTCATTTTGCTTCATATGTAGT 57.434 30.769 10.61 0.00 0.00 2.73
2375 3858 9.624697 GTGTAAATTCACTCATTTTGCTTCATA 57.375 29.630 0.00 0.00 35.68 2.15
2376 3859 8.362639 AGTGTAAATTCACTCATTTTGCTTCAT 58.637 29.630 0.00 0.00 44.07 2.57
2377 3860 7.715657 AGTGTAAATTCACTCATTTTGCTTCA 58.284 30.769 0.00 0.00 44.07 3.02
2398 3881 9.265901 GATGTATGTAGATGCATTTTAGAGTGT 57.734 33.333 0.00 0.00 35.26 3.55
2399 3882 9.264719 TGATGTATGTAGATGCATTTTAGAGTG 57.735 33.333 0.00 0.00 35.26 3.51
2400 3883 9.265901 GTGATGTATGTAGATGCATTTTAGAGT 57.734 33.333 0.00 0.00 35.26 3.24
2401 3884 9.486497 AGTGATGTATGTAGATGCATTTTAGAG 57.514 33.333 0.00 0.00 35.26 2.43
2405 3888 9.565090 ACATAGTGATGTATGTAGATGCATTTT 57.435 29.630 0.00 0.00 44.77 1.82
2406 3889 8.996271 CACATAGTGATGTATGTAGATGCATTT 58.004 33.333 0.00 0.00 44.82 2.32
2407 3890 7.605309 CCACATAGTGATGTATGTAGATGCATT 59.395 37.037 0.00 0.00 44.82 3.56
2408 3891 7.101700 CCACATAGTGATGTATGTAGATGCAT 58.898 38.462 0.00 0.00 44.82 3.96
2409 3892 6.041979 ACCACATAGTGATGTATGTAGATGCA 59.958 38.462 0.00 0.00 44.82 3.96
2410 3893 6.459066 ACCACATAGTGATGTATGTAGATGC 58.541 40.000 0.00 0.00 44.82 3.91
2411 3894 8.143835 TGAACCACATAGTGATGTATGTAGATG 58.856 37.037 0.00 0.00 44.82 2.90
2412 3895 8.250143 TGAACCACATAGTGATGTATGTAGAT 57.750 34.615 0.00 0.00 44.82 1.98
2413 3896 7.654022 TGAACCACATAGTGATGTATGTAGA 57.346 36.000 0.00 0.00 44.82 2.59
2427 3910 8.977412 TGTAGAGATTTCACTATGAACCACATA 58.023 33.333 0.00 0.00 35.89 2.29
2428 3911 7.851228 TGTAGAGATTTCACTATGAACCACAT 58.149 34.615 0.00 0.00 35.89 3.21
2429 3912 7.239763 TGTAGAGATTTCACTATGAACCACA 57.760 36.000 0.00 0.00 35.89 4.17
2430 3913 8.547967 TTTGTAGAGATTTCACTATGAACCAC 57.452 34.615 0.00 0.00 35.89 4.16
2431 3914 8.593679 TCTTTGTAGAGATTTCACTATGAACCA 58.406 33.333 0.00 0.00 35.89 3.67
2432 3915 8.874816 GTCTTTGTAGAGATTTCACTATGAACC 58.125 37.037 0.00 0.00 35.89 3.62
2433 3916 9.646427 AGTCTTTGTAGAGATTTCACTATGAAC 57.354 33.333 0.00 0.00 35.89 3.18
2435 3918 9.645059 CAAGTCTTTGTAGAGATTTCACTATGA 57.355 33.333 0.00 0.00 0.00 2.15
2436 3919 9.429359 ACAAGTCTTTGTAGAGATTTCACTATG 57.571 33.333 0.00 0.00 45.45 2.23
2452 3935 6.092259 CCTCCGTTCCTAAATACAAGTCTTTG 59.908 42.308 0.00 0.00 40.24 2.77
2453 3936 6.171213 CCTCCGTTCCTAAATACAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2454 3937 5.338137 CCCTCCGTTCCTAAATACAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2455 3938 4.161754 CCCTCCGTTCCTAAATACAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2456 3939 4.161001 TCCCTCCGTTCCTAAATACAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2457 3940 4.098894 TCCCTCCGTTCCTAAATACAAGT 58.901 43.478 0.00 0.00 0.00 3.16
2458 3941 4.161754 ACTCCCTCCGTTCCTAAATACAAG 59.838 45.833 0.00 0.00 0.00 3.16
2459 3942 4.098894 ACTCCCTCCGTTCCTAAATACAA 58.901 43.478 0.00 0.00 0.00 2.41
2460 3943 3.716431 ACTCCCTCCGTTCCTAAATACA 58.284 45.455 0.00 0.00 0.00 2.29
2461 3944 5.136105 TCTACTCCCTCCGTTCCTAAATAC 58.864 45.833 0.00 0.00 0.00 1.89
2462 3945 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2463 3946 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2464 3947 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2465 3948 3.744940 TTCTACTCCCTCCGTTCCTAA 57.255 47.619 0.00 0.00 0.00 2.69
2466 3949 3.744940 TTTCTACTCCCTCCGTTCCTA 57.255 47.619 0.00 0.00 0.00 2.94
2467 3950 2.617840 TTTCTACTCCCTCCGTTCCT 57.382 50.000 0.00 0.00 0.00 3.36
2468 3951 3.908643 AATTTCTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
2469 3952 6.346896 ACATAAATTTCTACTCCCTCCGTTC 58.653 40.000 0.00 0.00 0.00 3.95
2470 3953 6.156429 AGACATAAATTTCTACTCCCTCCGTT 59.844 38.462 0.00 0.00 0.00 4.44
2471 3954 5.661759 AGACATAAATTTCTACTCCCTCCGT 59.338 40.000 0.00 0.00 0.00 4.69
2472 3955 6.163135 AGACATAAATTTCTACTCCCTCCG 57.837 41.667 0.00 0.00 0.00 4.63
2473 3956 7.339482 ACAAGACATAAATTTCTACTCCCTCC 58.661 38.462 0.00 0.00 0.00 4.30
2474 3957 8.261522 AGACAAGACATAAATTTCTACTCCCTC 58.738 37.037 0.00 0.00 0.00 4.30
2475 3958 8.152023 AGACAAGACATAAATTTCTACTCCCT 57.848 34.615 0.00 0.00 0.00 4.20
2476 3959 8.794335 AAGACAAGACATAAATTTCTACTCCC 57.206 34.615 0.00 0.00 0.00 4.30
2501 3984 6.494893 ACAAGCGAGCATAAAGACAAATAA 57.505 33.333 0.00 0.00 0.00 1.40
2506 3989 1.992667 CGACAAGCGAGCATAAAGACA 59.007 47.619 0.00 0.00 44.57 3.41
2507 3990 1.993370 ACGACAAGCGAGCATAAAGAC 59.007 47.619 0.00 0.00 44.57 3.01
2508 3991 2.363788 ACGACAAGCGAGCATAAAGA 57.636 45.000 0.00 0.00 44.57 2.52
2509 3992 2.921121 TGTACGACAAGCGAGCATAAAG 59.079 45.455 0.00 0.00 44.57 1.85
2513 3996 0.243907 AGTGTACGACAAGCGAGCAT 59.756 50.000 0.00 0.00 44.57 3.79
2525 4008 3.390135 ACCATGAACAGTTCAGTGTACG 58.610 45.455 20.55 9.37 43.98 3.67
2569 4052 9.244292 TGGTATCTATCCATAGACAGTTGATAC 57.756 37.037 0.00 0.00 41.77 2.24
2644 4130 7.274250 CACTTGCAAATTTAGTTATGGAGCTTC 59.726 37.037 0.00 0.00 0.00 3.86
2648 4134 7.698130 GCTACACTTGCAAATTTAGTTATGGAG 59.302 37.037 0.00 0.00 0.00 3.86
2664 4150 2.079158 TCATGCTTCTGCTACACTTGC 58.921 47.619 0.00 0.00 40.48 4.01
2691 4179 6.434018 AACAAACAAACCAAATTGGACATG 57.566 33.333 20.25 15.37 40.96 3.21
2703 4193 6.031471 ACGAACATCTGTAAACAAACAAACC 58.969 36.000 0.00 0.00 0.00 3.27
2704 4194 8.603983 TTACGAACATCTGTAAACAAACAAAC 57.396 30.769 0.00 0.00 0.00 2.93
2712 4202 7.265495 CGACACATTTTACGAACATCTGTAAAC 59.735 37.037 0.00 0.00 39.52 2.01
2730 4220 9.398170 CACTAAAAAGAATGATTTCGACACATT 57.602 29.630 9.59 9.59 36.93 2.71
2738 4228 9.070149 GTGCAGATCACTAAAAAGAATGATTTC 57.930 33.333 0.00 0.00 42.38 2.17
2742 4232 6.072508 GGTGTGCAGATCACTAAAAAGAATGA 60.073 38.462 5.97 0.00 45.81 2.57
2743 4233 6.072286 AGGTGTGCAGATCACTAAAAAGAATG 60.072 38.462 0.00 0.00 45.81 2.67
2758 4248 0.953727 GCAATGTTCAGGTGTGCAGA 59.046 50.000 0.00 0.00 35.28 4.26
2763 4253 1.949525 GACACAGCAATGTTCAGGTGT 59.050 47.619 0.00 0.00 46.28 4.16
2766 4256 2.620115 ACAAGACACAGCAATGTTCAGG 59.380 45.455 0.00 0.00 31.24 3.86
2777 4267 5.505173 AAAACAGGATCAACAAGACACAG 57.495 39.130 0.00 0.00 0.00 3.66
2807 4304 9.044150 ACTGTTGAAACAAAATTACATTCATGG 57.956 29.630 0.00 0.00 38.66 3.66
2834 4331 9.860650 ATACTTACACAATTGCTCCCAATATAA 57.139 29.630 5.05 0.00 40.69 0.98
2835 4332 9.860650 AATACTTACACAATTGCTCCCAATATA 57.139 29.630 5.05 0.00 40.69 0.86
2836 4333 8.766994 AATACTTACACAATTGCTCCCAATAT 57.233 30.769 5.05 0.00 40.69 1.28
2842 4344 8.293867 TGTAACAAATACTTACACAATTGCTCC 58.706 33.333 5.05 0.00 35.42 4.70
2884 4386 6.464180 GCAGATCCTCTCCAACAGAAGATTAT 60.464 42.308 0.00 0.00 33.06 1.28
2913 4420 9.331282 GACTGTTAAGCTAATGGAGAATACAAT 57.669 33.333 0.00 0.00 0.00 2.71
2919 4426 7.719871 AGTAGACTGTTAAGCTAATGGAGAA 57.280 36.000 0.00 0.00 0.00 2.87
2928 4435 5.810080 AGGTTCAAGTAGACTGTTAAGCT 57.190 39.130 0.00 0.00 0.00 3.74
2985 4839 6.978659 GCAGTACAGCATCTACATAGTTGTAA 59.021 38.462 5.23 0.00 37.86 2.41
3175 5031 1.771854 TGAAAGTACCAGGCAGACCAA 59.228 47.619 0.00 0.00 39.06 3.67
3177 5033 1.946283 GCTGAAAGTACCAGGCAGACC 60.946 57.143 0.00 0.00 35.30 3.85
3208 5064 8.409358 ACAAATCACCTAAGCAGAAAGTAAAT 57.591 30.769 0.00 0.00 0.00 1.40
3289 5145 2.497107 TGAAAGCAGCAGTCAAAAGC 57.503 45.000 0.00 0.00 0.00 3.51
3290 5146 7.484007 CAGTATATTGAAAGCAGCAGTCAAAAG 59.516 37.037 13.16 0.27 35.07 2.27
3360 5219 1.199852 GCAACGCAAACGACAACCAG 61.200 55.000 0.00 0.00 43.93 4.00
3363 5222 1.942223 GGGCAACGCAAACGACAAC 60.942 57.895 0.00 0.00 43.93 3.32
3379 5238 2.233271 ACAATCAGCAACTCACAAGGG 58.767 47.619 0.00 0.00 0.00 3.95
3381 5240 4.501559 CACAAACAATCAGCAACTCACAAG 59.498 41.667 0.00 0.00 0.00 3.16
3385 5244 4.398988 AGTTCACAAACAATCAGCAACTCA 59.601 37.500 0.00 0.00 37.88 3.41
3387 5246 4.158394 ACAGTTCACAAACAATCAGCAACT 59.842 37.500 0.00 0.00 37.88 3.16
3391 5250 3.066621 TCCACAGTTCACAAACAATCAGC 59.933 43.478 0.00 0.00 37.88 4.26
3403 5276 3.442273 GGAAAACAACACTCCACAGTTCA 59.558 43.478 0.00 0.00 0.00 3.18
3413 5286 2.227194 GGATCACCGGAAAACAACACT 58.773 47.619 9.46 0.00 0.00 3.55
3414 5287 1.268625 GGGATCACCGGAAAACAACAC 59.731 52.381 9.46 0.00 36.97 3.32
3425 5298 1.453155 CAAGACAAAGGGGATCACCG 58.547 55.000 8.77 0.00 41.60 4.94
3450 5325 2.498892 GCAAAGCGCACTGAACAAG 58.501 52.632 11.47 0.00 41.79 3.16
3462 5337 1.978454 ATAGCTCCTCCATGCAAAGC 58.022 50.000 0.00 0.00 0.00 3.51
3494 5971 3.948473 TCATACCAGAGGAAAGAGACTCG 59.052 47.826 0.00 0.00 38.72 4.18
3502 5979 4.777366 TGATGACAGTCATACCAGAGGAAA 59.223 41.667 16.40 0.00 37.20 3.13
3505 5982 3.492309 GCTGATGACAGTCATACCAGAGG 60.492 52.174 25.96 9.65 45.04 3.69
3506 5983 3.384146 AGCTGATGACAGTCATACCAGAG 59.616 47.826 25.96 14.77 45.04 3.35
3507 5984 3.369175 AGCTGATGACAGTCATACCAGA 58.631 45.455 25.96 7.23 45.04 3.86
3508 5985 3.492309 GGAGCTGATGACAGTCATACCAG 60.492 52.174 20.71 20.71 45.04 4.00
3509 5986 2.432146 GGAGCTGATGACAGTCATACCA 59.568 50.000 16.40 10.02 45.04 3.25
3511 5988 4.099266 AGAAGGAGCTGATGACAGTCATAC 59.901 45.833 16.40 9.01 45.04 2.39
3513 5990 3.106054 AGAAGGAGCTGATGACAGTCAT 58.894 45.455 16.37 16.37 45.04 3.06
3514 5991 2.495270 GAGAAGGAGCTGATGACAGTCA 59.505 50.000 5.50 5.50 45.04 3.41
3515 5992 2.760092 AGAGAAGGAGCTGATGACAGTC 59.240 50.000 0.00 0.00 45.04 3.51
3517 5994 6.489700 TCTTATAGAGAAGGAGCTGATGACAG 59.510 42.308 0.00 0.00 45.91 3.51
3518 5995 6.368805 TCTTATAGAGAAGGAGCTGATGACA 58.631 40.000 0.00 0.00 0.00 3.58
3519 5996 6.892658 TCTTATAGAGAAGGAGCTGATGAC 57.107 41.667 0.00 0.00 0.00 3.06
3531 6008 8.759481 TCAAGATGAGCTCTTCTTATAGAGAA 57.241 34.615 32.69 16.17 42.48 2.87
3560 6037 4.793216 GTCCATTTGTTTTGATCCGAATCG 59.207 41.667 0.00 0.00 34.39 3.34
3570 6047 1.613437 AGGCTCCGTCCATTTGTTTTG 59.387 47.619 0.00 0.00 0.00 2.44
3578 6055 0.673644 CAAAACGAGGCTCCGTCCAT 60.674 55.000 9.32 0.00 42.54 3.41
3583 6060 3.788766 CGGCAAAACGAGGCTCCG 61.789 66.667 9.32 6.86 35.47 4.63
3584 6061 1.912371 CTTCGGCAAAACGAGGCTCC 61.912 60.000 9.32 0.00 44.47 4.70
3599 6076 0.950555 TGCAGCCTACACTTGCTTCG 60.951 55.000 0.00 0.00 38.60 3.79
3602 6079 0.179020 TTGTGCAGCCTACACTTGCT 60.179 50.000 0.00 0.00 38.86 3.91
3603 6080 0.883833 ATTGTGCAGCCTACACTTGC 59.116 50.000 0.00 0.00 38.86 4.01
3604 6081 1.881973 ACATTGTGCAGCCTACACTTG 59.118 47.619 0.00 0.00 38.86 3.16
3605 6082 2.154462 GACATTGTGCAGCCTACACTT 58.846 47.619 0.00 0.00 38.86 3.16
3607 6084 1.813513 AGACATTGTGCAGCCTACAC 58.186 50.000 0.00 0.00 38.55 2.90
3610 6087 2.703416 CTCAAGACATTGTGCAGCCTA 58.297 47.619 0.00 0.00 37.68 3.93
3637 6114 1.621814 AGGGTACAGCGAGTTAAGCAA 59.378 47.619 0.00 0.00 37.01 3.91
3649 6350 1.552337 ACAGATGCTCACAGGGTACAG 59.448 52.381 0.00 0.00 0.00 2.74
3679 6380 8.329502 GGGTATAATCAATAACTAGAGGGCAAT 58.670 37.037 0.00 0.00 0.00 3.56
3700 6401 3.476419 CGGGCTTCCACGGGGTAT 61.476 66.667 2.12 0.00 34.93 2.73
3782 6483 4.455070 AGGGTTATAAAATGGGAGAGGC 57.545 45.455 0.00 0.00 0.00 4.70
3846 6564 1.645034 CTGCTGATTTGGTCGACGAT 58.355 50.000 9.92 3.39 0.00 3.73
3933 6683 2.447887 CGCTGCGTCTGCTACTTGG 61.448 63.158 14.93 0.00 43.34 3.61
4008 6764 0.252696 TGTACAGGGAGGACATGGCT 60.253 55.000 0.00 0.00 0.00 4.75
4060 6828 3.775654 GAGGTGGGAGGCCGTGAG 61.776 72.222 0.00 0.00 0.00 3.51
4065 6833 2.367512 ATGAGGAGGTGGGAGGCC 60.368 66.667 0.00 0.00 0.00 5.19
4068 6836 1.828768 GAGCATGAGGAGGTGGGAG 59.171 63.158 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.