Multiple sequence alignment - TraesCS1A01G376900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G376900 chr1A 100.000 2243 0 0 1 2243 550660303 550662545 0.000000e+00 4143
1 TraesCS1A01G376900 chr1A 93.098 1362 76 8 899 2243 550646535 550647895 0.000000e+00 1978
2 TraesCS1A01G376900 chr1A 94.924 788 33 4 1461 2243 550685297 550686082 0.000000e+00 1227
3 TraesCS1A01G376900 chr1A 94.289 788 32 5 1461 2243 550675521 550676300 0.000000e+00 1194
4 TraesCS1A01G376900 chr1A 96.127 568 22 0 899 1466 550694039 550694606 0.000000e+00 928
5 TraesCS1A01G376900 chr1A 95.246 568 27 0 899 1466 550684427 550684994 0.000000e+00 900
6 TraesCS1A01G376900 chr1A 95.070 568 25 1 899 1466 550674654 550675218 0.000000e+00 891
7 TraesCS1A01G376900 chr1A 85.461 846 85 25 1262 2083 550721158 550721989 0.000000e+00 846
8 TraesCS1A01G376900 chr1A 86.991 638 57 16 1262 1889 550793733 550794354 0.000000e+00 695
9 TraesCS1A01G376900 chr1A 90.289 381 28 8 118 493 550646165 550646541 7.200000e-135 490
10 TraesCS1A01G376900 chr1A 89.406 387 26 9 118 493 550684051 550684433 7.250000e-130 473
11 TraesCS1A01G376900 chr1A 94.983 299 13 2 1457 1755 550694906 550695202 3.370000e-128 468
12 TraesCS1A01G376900 chr1A 88.372 387 30 10 118 493 550674278 550674660 3.400000e-123 451
13 TraesCS1A01G376900 chr1A 86.822 387 28 13 118 493 550693671 550694045 5.770000e-111 411
14 TraesCS1A01G376900 chr1A 78.491 530 59 33 1 493 550824062 550824573 1.680000e-76 296
15 TraesCS1A01G376900 chr1A 98.758 161 2 0 1 161 550674046 550674206 1.010000e-73 287
16 TraesCS1A01G376900 chr1A 86.266 233 22 8 1 232 550827586 550827809 6.190000e-61 244
17 TraesCS1A01G376900 chr1D 92.130 1296 89 10 899 2182 458160917 458162211 0.000000e+00 1816
18 TraesCS1A01G376900 chr1D 89.147 1161 106 14 899 2045 458257198 458258352 0.000000e+00 1428
19 TraesCS1A01G376900 chr1D 85.879 779 77 19 1409 2170 458230724 458231486 0.000000e+00 798
20 TraesCS1A01G376900 chr1D 93.952 496 24 6 1 493 458256712 458257204 0.000000e+00 745
21 TraesCS1A01G376900 chr1D 85.190 709 70 13 919 1609 458164526 458165217 0.000000e+00 695
22 TraesCS1A01G376900 chr1D 91.667 384 19 10 118 493 458160545 458160923 9.180000e-144 520
23 TraesCS1A01G376900 chr1D 80.571 525 53 29 1 493 458178032 458178539 2.120000e-95 359
24 TraesCS1A01G376900 chr1D 80.813 443 44 26 70 490 458238137 458238560 2.160000e-80 309
25 TraesCS1A01G376900 chr1D 87.554 233 20 7 1 232 458278183 458278407 6.140000e-66 261
26 TraesCS1A01G376900 chr1D 82.573 241 29 8 260 493 458285703 458285937 1.360000e-47 200
27 TraesCS1A01G376900 chr1B 86.473 621 70 9 922 1539 628783906 628784515 0.000000e+00 669
28 TraesCS1A01G376900 chr1B 86.150 426 46 8 1044 1462 629074097 629074516 4.390000e-122 448
29 TraesCS1A01G376900 chr1B 88.839 224 15 8 4 226 628813651 628813865 1.320000e-67 267
30 TraesCS1A01G376900 chr1B 87.124 233 20 9 1 232 628901585 628901808 2.860000e-64 255
31 TraesCS1A01G376900 chr1B 86.695 233 21 9 1 232 628858691 628858914 1.330000e-62 250
32 TraesCS1A01G376900 chr1B 86.695 233 20 10 1 232 628977759 628977981 4.780000e-62 248
33 TraesCS1A01G376900 chr6B 92.383 407 23 7 494 896 696855865 696855463 6.950000e-160 573
34 TraesCS1A01G376900 chr6B 91.932 409 24 6 494 896 706477978 706478383 4.180000e-157 564
35 TraesCS1A01G376900 chr2A 91.469 422 29 6 491 909 559826876 559827293 6.950000e-160 573
36 TraesCS1A01G376900 chr7A 91.932 409 24 6 494 896 662666166 662666571 4.180000e-157 564
37 TraesCS1A01G376900 chr2D 91.932 409 20 6 494 896 645455629 645455228 5.410000e-156 560
38 TraesCS1A01G376900 chr2D 75.526 523 75 29 1685 2175 422755459 422755960 8.120000e-50 207
39 TraesCS1A01G376900 chr4A 91.358 405 26 7 498 896 662109340 662109741 1.510000e-151 545
40 TraesCS1A01G376900 chr6A 91.067 403 30 3 494 896 208135282 208134886 7.050000e-150 540
41 TraesCS1A01G376900 chr3B 90.338 414 25 10 495 896 206384053 206384463 1.530000e-146 529
42 TraesCS1A01G376900 chrUn 89.731 409 32 6 494 897 314347577 314347174 4.270000e-142 514
43 TraesCS1A01G376900 chr5D 85.714 182 24 2 2005 2185 407924908 407924728 8.180000e-45 191
44 TraesCS1A01G376900 chr7B 82.632 190 31 2 1999 2186 634575782 634575593 1.380000e-37 167
45 TraesCS1A01G376900 chr7D 82.584 178 30 1 1999 2175 574769474 574769297 2.980000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G376900 chr1A 550660303 550662545 2242 False 4143.000000 4143 100.000000 1 2243 1 chr1A.!!$F1 2242
1 TraesCS1A01G376900 chr1A 550646165 550647895 1730 False 1234.000000 1978 91.693500 118 2243 2 chr1A.!!$F4 2125
2 TraesCS1A01G376900 chr1A 550684051 550686082 2031 False 866.666667 1227 93.192000 118 2243 3 chr1A.!!$F6 2125
3 TraesCS1A01G376900 chr1A 550721158 550721989 831 False 846.000000 846 85.461000 1262 2083 1 chr1A.!!$F2 821
4 TraesCS1A01G376900 chr1A 550674046 550676300 2254 False 705.750000 1194 94.122250 1 2243 4 chr1A.!!$F5 2242
5 TraesCS1A01G376900 chr1A 550793733 550794354 621 False 695.000000 695 86.991000 1262 1889 1 chr1A.!!$F3 627
6 TraesCS1A01G376900 chr1A 550693671 550695202 1531 False 602.333333 928 92.644000 118 1755 3 chr1A.!!$F7 1637
7 TraesCS1A01G376900 chr1A 550824062 550827809 3747 False 270.000000 296 82.378500 1 493 2 chr1A.!!$F8 492
8 TraesCS1A01G376900 chr1D 458256712 458258352 1640 False 1086.500000 1428 91.549500 1 2045 2 chr1D.!!$F7 2044
9 TraesCS1A01G376900 chr1D 458160545 458165217 4672 False 1010.333333 1816 89.662333 118 2182 3 chr1D.!!$F6 2064
10 TraesCS1A01G376900 chr1D 458230724 458231486 762 False 798.000000 798 85.879000 1409 2170 1 chr1D.!!$F2 761
11 TraesCS1A01G376900 chr1D 458178032 458178539 507 False 359.000000 359 80.571000 1 493 1 chr1D.!!$F1 492
12 TraesCS1A01G376900 chr1B 628783906 628784515 609 False 669.000000 669 86.473000 922 1539 1 chr1B.!!$F1 617
13 TraesCS1A01G376900 chr2D 422755459 422755960 501 False 207.000000 207 75.526000 1685 2175 1 chr2D.!!$F1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 920 0.036952 TTTTGCCGAGAGCTCCTCTG 60.037 55.0 10.93 5.28 41.35 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2217 4515 2.280552 CCATGCCAAAGCCTGCAGT 61.281 57.895 13.81 0.0 41.46 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 298 4.913345 GCGAAATTACTTGTTTGTGGTACC 59.087 41.667 4.43 4.43 0.00 3.34
214 336 1.296392 CATGACACGAGGCCTCCAA 59.704 57.895 27.20 8.48 0.00 3.53
227 355 3.358076 CTCCAACCGACCCTCTCGC 62.358 68.421 0.00 0.00 41.46 5.03
228 356 4.796231 CCAACCGACCCTCTCGCG 62.796 72.222 0.00 0.00 41.46 5.87
265 418 4.096382 CGTACCTTGCCTTTTTATGATGCT 59.904 41.667 0.00 0.00 0.00 3.79
307 464 0.751452 GTAGCTAGTGTAGGGTGCCC 59.249 60.000 0.00 0.00 0.00 5.36
431 613 1.372499 GCTGTCGTTACTGTCGGCA 60.372 57.895 0.00 0.00 40.54 5.69
436 618 1.876714 CGTTACTGTCGGCATCGGG 60.877 63.158 0.00 0.00 36.95 5.14
493 675 0.963962 AGGAGCCACATTTGTGCAAG 59.036 50.000 5.15 0.00 44.34 4.01
494 676 0.037975 GGAGCCACATTTGTGCAAGG 60.038 55.000 5.15 0.00 44.34 3.61
495 677 0.037975 GAGCCACATTTGTGCAAGGG 60.038 55.000 5.15 0.00 44.34 3.95
496 678 0.469705 AGCCACATTTGTGCAAGGGA 60.470 50.000 5.15 0.00 44.34 4.20
497 679 0.392336 GCCACATTTGTGCAAGGGAA 59.608 50.000 5.15 0.00 44.34 3.97
498 680 1.202627 GCCACATTTGTGCAAGGGAAA 60.203 47.619 5.15 0.00 44.34 3.13
499 681 2.758009 CCACATTTGTGCAAGGGAAAG 58.242 47.619 5.15 0.00 44.34 2.62
501 683 3.432046 CCACATTTGTGCAAGGGAAAGTT 60.432 43.478 5.15 0.00 44.34 2.66
502 684 3.556775 CACATTTGTGCAAGGGAAAGTTG 59.443 43.478 0.00 0.00 39.39 3.16
503 685 3.197549 ACATTTGTGCAAGGGAAAGTTGT 59.802 39.130 0.00 0.00 0.00 3.32
504 686 2.957491 TTGTGCAAGGGAAAGTTGTG 57.043 45.000 0.00 0.00 0.00 3.33
506 688 0.249447 GTGCAAGGGAAAGTTGTGGC 60.249 55.000 0.00 0.00 0.00 5.01
507 689 0.396974 TGCAAGGGAAAGTTGTGGCT 60.397 50.000 0.00 0.00 0.00 4.75
508 690 1.133637 TGCAAGGGAAAGTTGTGGCTA 60.134 47.619 0.00 0.00 0.00 3.93
509 691 1.269723 GCAAGGGAAAGTTGTGGCTAC 59.730 52.381 0.00 0.00 0.00 3.58
510 692 2.863809 CAAGGGAAAGTTGTGGCTACT 58.136 47.619 0.64 0.00 0.00 2.57
511 693 2.814336 CAAGGGAAAGTTGTGGCTACTC 59.186 50.000 0.64 0.00 0.00 2.59
512 694 2.339769 AGGGAAAGTTGTGGCTACTCT 58.660 47.619 0.64 0.00 0.00 3.24
513 695 2.303311 AGGGAAAGTTGTGGCTACTCTC 59.697 50.000 0.64 0.00 0.00 3.20
514 696 2.338500 GGAAAGTTGTGGCTACTCTCG 58.662 52.381 0.64 0.00 0.00 4.04
515 697 2.338500 GAAAGTTGTGGCTACTCTCGG 58.662 52.381 0.64 0.00 0.00 4.63
516 698 0.608640 AAGTTGTGGCTACTCTCGGG 59.391 55.000 0.64 0.00 0.00 5.14
517 699 0.542232 AGTTGTGGCTACTCTCGGGT 60.542 55.000 0.64 0.00 0.00 5.28
518 700 0.389948 GTTGTGGCTACTCTCGGGTG 60.390 60.000 0.64 0.00 0.00 4.61
519 701 0.830444 TTGTGGCTACTCTCGGGTGT 60.830 55.000 0.64 0.00 0.00 4.16
520 702 0.038599 TGTGGCTACTCTCGGGTGTA 59.961 55.000 0.64 0.00 0.00 2.90
521 703 0.739561 GTGGCTACTCTCGGGTGTAG 59.260 60.000 18.14 18.14 40.47 2.74
522 704 0.395311 TGGCTACTCTCGGGTGTAGG 60.395 60.000 22.40 7.80 38.93 3.18
523 705 0.395448 GGCTACTCTCGGGTGTAGGT 60.395 60.000 22.40 0.79 38.93 3.08
524 706 1.133976 GGCTACTCTCGGGTGTAGGTA 60.134 57.143 22.40 1.81 38.93 3.08
525 707 1.946081 GCTACTCTCGGGTGTAGGTAC 59.054 57.143 22.40 5.91 38.93 3.34
526 708 2.681976 GCTACTCTCGGGTGTAGGTACA 60.682 54.545 22.40 0.00 38.93 2.90
537 719 1.001181 TGTAGGTACACCCGAGTTTGC 59.999 52.381 0.00 0.00 38.74 3.68
538 720 1.001181 GTAGGTACACCCGAGTTTGCA 59.999 52.381 0.00 0.00 38.74 4.08
539 721 0.470766 AGGTACACCCGAGTTTGCAA 59.529 50.000 0.00 0.00 38.74 4.08
540 722 1.134037 AGGTACACCCGAGTTTGCAAA 60.134 47.619 8.05 8.05 38.74 3.68
541 723 1.677052 GGTACACCCGAGTTTGCAAAA 59.323 47.619 14.67 0.00 0.00 2.44
542 724 2.542205 GGTACACCCGAGTTTGCAAAAC 60.542 50.000 14.67 10.24 0.00 2.43
543 725 1.470051 ACACCCGAGTTTGCAAAACT 58.530 45.000 14.67 13.19 0.00 2.66
544 726 1.822371 ACACCCGAGTTTGCAAAACTT 59.178 42.857 14.67 2.42 0.00 2.66
545 727 2.232696 ACACCCGAGTTTGCAAAACTTT 59.767 40.909 14.67 0.00 0.00 2.66
546 728 2.602660 CACCCGAGTTTGCAAAACTTTG 59.397 45.455 14.67 6.65 41.03 2.77
547 729 2.494073 ACCCGAGTTTGCAAAACTTTGA 59.506 40.909 14.67 0.00 40.55 2.69
548 730 3.056465 ACCCGAGTTTGCAAAACTTTGAA 60.056 39.130 14.67 0.00 40.55 2.69
549 731 3.929610 CCCGAGTTTGCAAAACTTTGAAA 59.070 39.130 14.67 0.00 40.55 2.69
550 732 4.390297 CCCGAGTTTGCAAAACTTTGAAAA 59.610 37.500 14.67 5.38 42.00 2.29
551 733 5.106908 CCCGAGTTTGCAAAACTTTGAAAAA 60.107 36.000 14.67 5.09 44.80 1.94
552 734 6.403092 CCCGAGTTTGCAAAACTTTGAAAAAT 60.403 34.615 14.67 8.73 44.80 1.82
553 735 6.465465 CCGAGTTTGCAAAACTTTGAAAAATG 59.535 34.615 14.67 6.14 44.80 2.32
554 736 7.014702 CGAGTTTGCAAAACTTTGAAAAATGT 58.985 30.769 14.67 1.17 44.80 2.71
555 737 7.006387 CGAGTTTGCAAAACTTTGAAAAATGTG 59.994 33.333 14.67 3.07 44.80 3.21
556 738 7.869800 AGTTTGCAAAACTTTGAAAAATGTGA 58.130 26.923 14.67 0.00 44.80 3.58
557 739 8.513774 AGTTTGCAAAACTTTGAAAAATGTGAT 58.486 25.926 14.67 0.00 44.80 3.06
558 740 9.766277 GTTTGCAAAACTTTGAAAAATGTGATA 57.234 25.926 14.67 0.00 44.80 2.15
567 749 9.665719 ACTTTGAAAAATGTGATAAAACAAGGT 57.334 25.926 0.00 0.00 32.81 3.50
569 751 8.655651 TTGAAAAATGTGATAAAACAAGGTCC 57.344 30.769 0.00 0.00 32.81 4.46
570 752 7.786030 TGAAAAATGTGATAAAACAAGGTCCA 58.214 30.769 0.00 0.00 32.81 4.02
571 753 8.260818 TGAAAAATGTGATAAAACAAGGTCCAA 58.739 29.630 0.00 0.00 32.81 3.53
572 754 9.103861 GAAAAATGTGATAAAACAAGGTCCAAA 57.896 29.630 0.00 0.00 32.81 3.28
573 755 9.454859 AAAAATGTGATAAAACAAGGTCCAAAA 57.545 25.926 0.00 0.00 32.81 2.44
574 756 9.454859 AAAATGTGATAAAACAAGGTCCAAAAA 57.545 25.926 0.00 0.00 32.81 1.94
575 757 9.625747 AAATGTGATAAAACAAGGTCCAAAAAT 57.374 25.926 0.00 0.00 32.81 1.82
576 758 9.625747 AATGTGATAAAACAAGGTCCAAAAATT 57.374 25.926 0.00 0.00 32.81 1.82
577 759 8.655651 TGTGATAAAACAAGGTCCAAAAATTC 57.344 30.769 0.00 0.00 0.00 2.17
578 760 8.482128 TGTGATAAAACAAGGTCCAAAAATTCT 58.518 29.630 0.00 0.00 0.00 2.40
579 761 8.764287 GTGATAAAACAAGGTCCAAAAATTCTG 58.236 33.333 0.00 0.00 0.00 3.02
580 762 8.700051 TGATAAAACAAGGTCCAAAAATTCTGA 58.300 29.630 0.00 0.00 0.00 3.27
581 763 9.541143 GATAAAACAAGGTCCAAAAATTCTGAA 57.459 29.630 0.00 0.00 0.00 3.02
582 764 9.898152 ATAAAACAAGGTCCAAAAATTCTGAAA 57.102 25.926 0.00 0.00 0.00 2.69
583 765 8.806429 AAAACAAGGTCCAAAAATTCTGAAAT 57.194 26.923 0.00 0.00 0.00 2.17
584 766 8.806429 AAACAAGGTCCAAAAATTCTGAAATT 57.194 26.923 0.00 0.00 36.64 1.82
585 767 8.806429 AACAAGGTCCAAAAATTCTGAAATTT 57.194 26.923 0.00 0.00 44.97 1.82
586 768 8.437360 ACAAGGTCCAAAAATTCTGAAATTTC 57.563 30.769 11.41 11.41 42.82 2.17
587 769 7.224557 ACAAGGTCCAAAAATTCTGAAATTTCG 59.775 33.333 13.34 8.39 42.82 3.46
588 770 7.049799 AGGTCCAAAAATTCTGAAATTTCGA 57.950 32.000 13.34 10.44 42.82 3.71
589 771 7.147976 AGGTCCAAAAATTCTGAAATTTCGAG 58.852 34.615 13.34 11.35 42.82 4.04
590 772 7.014230 AGGTCCAAAAATTCTGAAATTTCGAGA 59.986 33.333 13.34 13.23 42.82 4.04
591 773 7.114953 GGTCCAAAAATTCTGAAATTTCGAGAC 59.885 37.037 13.34 12.76 42.82 3.36
592 774 7.647715 GTCCAAAAATTCTGAAATTTCGAGACA 59.352 33.333 13.34 8.50 42.82 3.41
593 775 8.194104 TCCAAAAATTCTGAAATTTCGAGACAA 58.806 29.630 13.34 4.64 42.82 3.18
594 776 8.268738 CCAAAAATTCTGAAATTTCGAGACAAC 58.731 33.333 13.34 0.00 42.82 3.32
595 777 8.806634 CAAAAATTCTGAAATTTCGAGACAACA 58.193 29.630 13.34 3.76 42.82 3.33
596 778 8.925161 AAAATTCTGAAATTTCGAGACAACAA 57.075 26.923 13.34 3.46 42.82 2.83
597 779 8.566008 AAATTCTGAAATTTCGAGACAACAAG 57.434 30.769 13.34 2.37 40.28 3.16
598 780 5.095691 TCTGAAATTTCGAGACAACAAGC 57.904 39.130 13.34 0.00 0.00 4.01
599 781 4.816385 TCTGAAATTTCGAGACAACAAGCT 59.184 37.500 13.34 0.00 0.00 3.74
600 782 5.296780 TCTGAAATTTCGAGACAACAAGCTT 59.703 36.000 13.34 0.00 0.00 3.74
601 783 5.510671 TGAAATTTCGAGACAACAAGCTTC 58.489 37.500 13.34 0.00 0.00 3.86
602 784 5.065859 TGAAATTTCGAGACAACAAGCTTCA 59.934 36.000 13.34 0.00 0.00 3.02
603 785 5.695851 AATTTCGAGACAACAAGCTTCAT 57.304 34.783 0.00 0.00 0.00 2.57
604 786 4.732285 TTTCGAGACAACAAGCTTCATC 57.268 40.909 0.00 0.00 0.00 2.92
605 787 3.385193 TCGAGACAACAAGCTTCATCA 57.615 42.857 0.00 0.00 0.00 3.07
606 788 3.727726 TCGAGACAACAAGCTTCATCAA 58.272 40.909 0.00 0.00 0.00 2.57
607 789 3.742882 TCGAGACAACAAGCTTCATCAAG 59.257 43.478 0.00 0.00 0.00 3.02
608 790 3.496130 CGAGACAACAAGCTTCATCAAGT 59.504 43.478 0.00 0.00 31.45 3.16
609 791 4.610007 CGAGACAACAAGCTTCATCAAGTG 60.610 45.833 0.00 0.00 31.45 3.16
610 792 4.202441 AGACAACAAGCTTCATCAAGTGT 58.798 39.130 0.00 0.00 31.45 3.55
611 793 4.641989 AGACAACAAGCTTCATCAAGTGTT 59.358 37.500 0.00 0.00 31.93 3.32
612 794 5.126061 AGACAACAAGCTTCATCAAGTGTTT 59.874 36.000 0.00 0.00 30.23 2.83
613 795 5.104374 ACAACAAGCTTCATCAAGTGTTTG 58.896 37.500 0.00 0.00 30.23 2.93
614 796 5.105797 ACAACAAGCTTCATCAAGTGTTTGA 60.106 36.000 0.00 0.00 46.67 2.69
615 797 5.581126 ACAAGCTTCATCAAGTGTTTGAA 57.419 34.783 0.00 0.00 45.82 2.69
616 798 5.343249 ACAAGCTTCATCAAGTGTTTGAAC 58.657 37.500 0.00 0.00 45.82 3.18
617 799 5.126061 ACAAGCTTCATCAAGTGTTTGAACT 59.874 36.000 0.00 0.00 45.82 3.01
618 800 5.841957 AGCTTCATCAAGTGTTTGAACTT 57.158 34.783 0.00 0.00 45.82 2.66
619 801 6.212888 AGCTTCATCAAGTGTTTGAACTTT 57.787 33.333 0.00 0.00 45.82 2.66
620 802 6.633856 AGCTTCATCAAGTGTTTGAACTTTT 58.366 32.000 0.00 0.00 45.82 2.27
621 803 6.753744 AGCTTCATCAAGTGTTTGAACTTTTC 59.246 34.615 0.00 0.00 45.82 2.29
622 804 6.291269 GCTTCATCAAGTGTTTGAACTTTTCG 60.291 38.462 0.00 0.00 45.82 3.46
623 805 5.034152 TCATCAAGTGTTTGAACTTTTCGC 58.966 37.500 0.00 0.00 45.82 4.70
624 806 4.427096 TCAAGTGTTTGAACTTTTCGCA 57.573 36.364 0.00 0.00 40.26 5.10
625 807 4.799678 TCAAGTGTTTGAACTTTTCGCAA 58.200 34.783 0.00 0.00 40.26 4.85
626 808 5.223382 TCAAGTGTTTGAACTTTTCGCAAA 58.777 33.333 0.00 0.00 40.26 3.68
627 809 5.692204 TCAAGTGTTTGAACTTTTCGCAAAA 59.308 32.000 0.00 0.00 40.26 2.44
628 810 6.367422 TCAAGTGTTTGAACTTTTCGCAAAAT 59.633 30.769 0.00 0.00 40.26 1.82
629 811 6.720012 AGTGTTTGAACTTTTCGCAAAATT 57.280 29.167 0.00 0.00 33.80 1.82
630 812 7.127917 AGTGTTTGAACTTTTCGCAAAATTT 57.872 28.000 0.00 0.00 33.80 1.82
631 813 7.233689 AGTGTTTGAACTTTTCGCAAAATTTC 58.766 30.769 12.89 12.89 39.25 2.17
632 814 7.012358 GTGTTTGAACTTTTCGCAAAATTTCA 58.988 30.769 15.97 15.97 43.66 2.69
633 815 7.214263 GTGTTTGAACTTTTCGCAAAATTTCAG 59.786 33.333 17.64 0.00 44.96 3.02
634 816 5.388225 TGAACTTTTCGCAAAATTTCAGC 57.612 34.783 15.97 5.70 41.84 4.26
635 817 5.108517 TGAACTTTTCGCAAAATTTCAGCT 58.891 33.333 15.97 0.00 41.84 4.24
636 818 6.269315 TGAACTTTTCGCAAAATTTCAGCTA 58.731 32.000 15.97 1.11 41.84 3.32
637 819 6.754209 TGAACTTTTCGCAAAATTTCAGCTAA 59.246 30.769 15.97 6.32 41.84 3.09
638 820 7.276658 TGAACTTTTCGCAAAATTTCAGCTAAA 59.723 29.630 15.97 10.82 41.84 1.85
639 821 7.532682 ACTTTTCGCAAAATTTCAGCTAAAA 57.467 28.000 18.39 18.39 33.69 1.52
640 822 7.969314 ACTTTTCGCAAAATTTCAGCTAAAAA 58.031 26.923 19.23 17.57 34.16 1.94
641 823 7.902917 ACTTTTCGCAAAATTTCAGCTAAAAAC 59.097 29.630 19.23 0.00 34.16 2.43
642 824 6.893958 TTCGCAAAATTTCAGCTAAAAACA 57.106 29.167 12.11 0.00 0.00 2.83
643 825 6.893958 TCGCAAAATTTCAGCTAAAAACAA 57.106 29.167 12.11 0.00 0.00 2.83
644 826 6.700978 TCGCAAAATTTCAGCTAAAAACAAC 58.299 32.000 12.11 0.00 0.00 3.32
645 827 6.311445 TCGCAAAATTTCAGCTAAAAACAACA 59.689 30.769 12.11 0.00 0.00 3.33
646 828 7.010923 TCGCAAAATTTCAGCTAAAAACAACAT 59.989 29.630 12.11 0.00 0.00 2.71
647 829 7.318674 CGCAAAATTTCAGCTAAAAACAACATC 59.681 33.333 12.11 0.00 0.00 3.06
648 830 7.587392 GCAAAATTTCAGCTAAAAACAACATCC 59.413 33.333 7.99 0.00 0.00 3.51
649 831 7.406799 AAATTTCAGCTAAAAACAACATCCG 57.593 32.000 0.00 0.00 0.00 4.18
650 832 5.759506 TTTCAGCTAAAAACAACATCCGA 57.240 34.783 0.00 0.00 0.00 4.55
651 833 5.356882 TTCAGCTAAAAACAACATCCGAG 57.643 39.130 0.00 0.00 0.00 4.63
652 834 3.751175 TCAGCTAAAAACAACATCCGAGG 59.249 43.478 0.00 0.00 0.00 4.63
653 835 3.751175 CAGCTAAAAACAACATCCGAGGA 59.249 43.478 0.00 0.00 0.00 3.71
654 836 4.003648 AGCTAAAAACAACATCCGAGGAG 58.996 43.478 0.00 0.00 0.00 3.69
655 837 3.426292 GCTAAAAACAACATCCGAGGAGC 60.426 47.826 0.00 0.00 0.00 4.70
656 838 2.568623 AAAACAACATCCGAGGAGCT 57.431 45.000 0.00 0.00 0.00 4.09
657 839 2.100605 AAACAACATCCGAGGAGCTC 57.899 50.000 4.71 4.71 0.00 4.09
658 840 1.270907 AACAACATCCGAGGAGCTCT 58.729 50.000 14.64 0.00 0.00 4.09
659 841 1.270907 ACAACATCCGAGGAGCTCTT 58.729 50.000 14.64 5.66 0.00 2.85
660 842 2.457598 ACAACATCCGAGGAGCTCTTA 58.542 47.619 14.64 0.00 0.00 2.10
661 843 2.166664 ACAACATCCGAGGAGCTCTTAC 59.833 50.000 14.64 4.59 0.00 2.34
662 844 2.145397 ACATCCGAGGAGCTCTTACA 57.855 50.000 14.64 0.00 0.00 2.41
663 845 2.457598 ACATCCGAGGAGCTCTTACAA 58.542 47.619 14.64 0.00 0.00 2.41
664 846 2.832129 ACATCCGAGGAGCTCTTACAAA 59.168 45.455 14.64 0.00 0.00 2.83
665 847 3.260884 ACATCCGAGGAGCTCTTACAAAA 59.739 43.478 14.64 0.00 0.00 2.44
666 848 4.253685 CATCCGAGGAGCTCTTACAAAAA 58.746 43.478 14.64 0.00 0.00 1.94
690 872 7.614124 AAAACAAAATCAATGCTCAAACAGT 57.386 28.000 0.00 0.00 0.00 3.55
691 873 6.592798 AACAAAATCAATGCTCAAACAGTG 57.407 33.333 0.00 0.00 36.99 3.66
692 874 4.508861 ACAAAATCAATGCTCAAACAGTGC 59.491 37.500 0.00 0.00 35.67 4.40
698 880 0.101040 TGCTCAAACAGTGCACAAGC 59.899 50.000 21.04 16.47 41.43 4.01
736 918 3.233355 TTTTTGCCGAGAGCTCCTC 57.767 52.632 10.93 6.61 44.23 3.71
737 919 0.687354 TTTTTGCCGAGAGCTCCTCT 59.313 50.000 10.93 0.00 44.28 3.69
738 920 0.036952 TTTTGCCGAGAGCTCCTCTG 60.037 55.000 10.93 5.28 41.35 3.35
739 921 0.900182 TTTGCCGAGAGCTCCTCTGA 60.900 55.000 10.93 0.00 41.35 3.27
740 922 0.685785 TTGCCGAGAGCTCCTCTGAT 60.686 55.000 10.93 0.00 41.35 2.90
741 923 1.363443 GCCGAGAGCTCCTCTGATG 59.637 63.158 10.93 0.00 41.35 3.07
742 924 1.391157 GCCGAGAGCTCCTCTGATGT 61.391 60.000 10.93 0.00 41.35 3.06
743 925 1.110442 CCGAGAGCTCCTCTGATGTT 58.890 55.000 10.93 0.00 41.35 2.71
744 926 2.302260 CCGAGAGCTCCTCTGATGTTA 58.698 52.381 10.93 0.00 41.35 2.41
745 927 2.890311 CCGAGAGCTCCTCTGATGTTAT 59.110 50.000 10.93 0.00 41.35 1.89
746 928 3.320541 CCGAGAGCTCCTCTGATGTTATT 59.679 47.826 10.93 0.00 41.35 1.40
747 929 4.202202 CCGAGAGCTCCTCTGATGTTATTT 60.202 45.833 10.93 0.00 41.35 1.40
748 930 5.355596 CGAGAGCTCCTCTGATGTTATTTT 58.644 41.667 10.93 0.00 41.35 1.82
749 931 5.814705 CGAGAGCTCCTCTGATGTTATTTTT 59.185 40.000 10.93 0.00 41.35 1.94
772 954 4.305989 TGTGAATTTTTCGCAGAAAGCT 57.694 36.364 0.00 0.00 44.54 3.74
773 955 4.681744 TGTGAATTTTTCGCAGAAAGCTT 58.318 34.783 0.00 0.00 44.54 3.74
774 956 4.503734 TGTGAATTTTTCGCAGAAAGCTTG 59.496 37.500 0.00 0.00 44.54 4.01
775 957 4.739716 GTGAATTTTTCGCAGAAAGCTTGA 59.260 37.500 0.00 0.00 45.90 3.02
776 958 5.231991 GTGAATTTTTCGCAGAAAGCTTGAA 59.768 36.000 0.00 0.00 45.90 2.69
777 959 5.231991 TGAATTTTTCGCAGAAAGCTTGAAC 59.768 36.000 0.00 0.00 45.90 3.18
778 960 3.773860 TTTTCGCAGAAAGCTTGAACA 57.226 38.095 0.00 0.00 45.90 3.18
779 961 3.988379 TTTCGCAGAAAGCTTGAACAT 57.012 38.095 0.00 0.00 45.90 2.71
780 962 3.988379 TTCGCAGAAAGCTTGAACATT 57.012 38.095 0.00 0.00 45.90 2.71
781 963 3.988379 TCGCAGAAAGCTTGAACATTT 57.012 38.095 0.00 0.00 42.61 2.32
782 964 3.631144 TCGCAGAAAGCTTGAACATTTG 58.369 40.909 0.00 0.00 42.61 2.32
783 965 3.314913 TCGCAGAAAGCTTGAACATTTGA 59.685 39.130 0.00 0.00 42.61 2.69
784 966 4.022935 TCGCAGAAAGCTTGAACATTTGAT 60.023 37.500 0.00 0.00 42.61 2.57
785 967 4.089493 CGCAGAAAGCTTGAACATTTGATG 59.911 41.667 0.00 0.00 42.61 3.07
786 968 5.224888 GCAGAAAGCTTGAACATTTGATGA 58.775 37.500 0.00 0.00 41.15 2.92
787 969 5.693104 GCAGAAAGCTTGAACATTTGATGAA 59.307 36.000 0.00 0.00 41.15 2.57
788 970 6.128902 GCAGAAAGCTTGAACATTTGATGAAG 60.129 38.462 0.00 0.00 41.15 3.02
789 971 6.921857 CAGAAAGCTTGAACATTTGATGAAGT 59.078 34.615 0.00 0.00 0.00 3.01
790 972 7.437267 CAGAAAGCTTGAACATTTGATGAAGTT 59.563 33.333 0.00 0.00 0.00 2.66
791 973 7.983484 AGAAAGCTTGAACATTTGATGAAGTTT 59.017 29.630 0.00 0.00 0.00 2.66
792 974 7.704789 AAGCTTGAACATTTGATGAAGTTTC 57.295 32.000 0.00 0.00 0.00 2.78
793 975 6.808829 AGCTTGAACATTTGATGAAGTTTCA 58.191 32.000 0.00 0.00 42.14 2.69
806 988 5.885449 TGAAGTTTCATGTCCCCAAATTT 57.115 34.783 0.00 0.00 31.01 1.82
807 989 5.852827 TGAAGTTTCATGTCCCCAAATTTC 58.147 37.500 0.00 0.00 31.01 2.17
808 990 5.365025 TGAAGTTTCATGTCCCCAAATTTCA 59.635 36.000 9.34 9.34 34.95 2.69
809 991 5.473066 AGTTTCATGTCCCCAAATTTCAG 57.527 39.130 0.00 0.00 0.00 3.02
810 992 5.147032 AGTTTCATGTCCCCAAATTTCAGA 58.853 37.500 0.00 0.00 0.00 3.27
811 993 5.781818 AGTTTCATGTCCCCAAATTTCAGAT 59.218 36.000 0.00 0.00 0.00 2.90
812 994 6.270695 AGTTTCATGTCCCCAAATTTCAGATT 59.729 34.615 0.00 0.00 0.00 2.40
813 995 6.684897 TTCATGTCCCCAAATTTCAGATTT 57.315 33.333 0.00 0.00 0.00 2.17
814 996 6.684897 TCATGTCCCCAAATTTCAGATTTT 57.315 33.333 0.00 0.00 0.00 1.82
815 997 7.077050 TCATGTCCCCAAATTTCAGATTTTT 57.923 32.000 0.00 0.00 0.00 1.94
867 1049 2.554370 TTTCCAAACTCGGGTGTAGG 57.446 50.000 0.00 0.00 0.00 3.18
868 1050 1.426751 TTCCAAACTCGGGTGTAGGT 58.573 50.000 0.00 0.00 0.00 3.08
869 1051 2.307496 TCCAAACTCGGGTGTAGGTA 57.693 50.000 0.00 0.00 0.00 3.08
870 1052 1.895131 TCCAAACTCGGGTGTAGGTAC 59.105 52.381 0.00 0.00 0.00 3.34
871 1053 1.619827 CCAAACTCGGGTGTAGGTACA 59.380 52.381 0.00 0.00 0.00 2.90
882 1064 3.272574 TGTAGGTACACCCGAGAGTAG 57.727 52.381 0.00 0.00 38.74 2.57
883 1065 2.840038 TGTAGGTACACCCGAGAGTAGA 59.160 50.000 0.00 0.00 38.74 2.59
884 1066 3.264193 TGTAGGTACACCCGAGAGTAGAA 59.736 47.826 0.00 0.00 38.74 2.10
885 1067 3.446442 AGGTACACCCGAGAGTAGAAA 57.554 47.619 0.00 0.00 38.74 2.52
886 1068 3.771216 AGGTACACCCGAGAGTAGAAAA 58.229 45.455 0.00 0.00 38.74 2.29
887 1069 3.762823 AGGTACACCCGAGAGTAGAAAAG 59.237 47.826 0.00 0.00 38.74 2.27
888 1070 2.745515 ACACCCGAGAGTAGAAAAGC 57.254 50.000 0.00 0.00 0.00 3.51
889 1071 2.249139 ACACCCGAGAGTAGAAAAGCT 58.751 47.619 0.00 0.00 0.00 3.74
890 1072 2.028930 ACACCCGAGAGTAGAAAAGCTG 60.029 50.000 0.00 0.00 0.00 4.24
891 1073 1.550976 ACCCGAGAGTAGAAAAGCTGG 59.449 52.381 0.00 0.00 0.00 4.85
892 1074 1.550976 CCCGAGAGTAGAAAAGCTGGT 59.449 52.381 0.00 0.00 0.00 4.00
893 1075 2.417515 CCCGAGAGTAGAAAAGCTGGTC 60.418 54.545 0.00 0.00 0.00 4.02
894 1076 2.494073 CCGAGAGTAGAAAAGCTGGTCT 59.506 50.000 4.90 4.90 0.00 3.85
895 1077 3.428316 CCGAGAGTAGAAAAGCTGGTCTC 60.428 52.174 2.77 0.00 35.22 3.36
896 1078 3.442273 CGAGAGTAGAAAAGCTGGTCTCT 59.558 47.826 2.77 3.81 35.87 3.10
897 1079 4.674101 CGAGAGTAGAAAAGCTGGTCTCTG 60.674 50.000 2.77 0.00 35.87 3.35
898 1080 4.156477 AGAGTAGAAAAGCTGGTCTCTGT 58.844 43.478 2.77 0.00 33.02 3.41
899 1081 4.021544 AGAGTAGAAAAGCTGGTCTCTGTG 60.022 45.833 2.77 0.00 33.02 3.66
900 1082 3.643792 AGTAGAAAAGCTGGTCTCTGTGT 59.356 43.478 2.77 0.00 0.00 3.72
901 1083 2.843701 AGAAAAGCTGGTCTCTGTGTG 58.156 47.619 0.00 0.00 0.00 3.82
902 1084 1.265365 GAAAAGCTGGTCTCTGTGTGC 59.735 52.381 0.00 0.00 0.00 4.57
903 1085 0.181114 AAAGCTGGTCTCTGTGTGCA 59.819 50.000 0.00 0.00 0.00 4.57
904 1086 0.181114 AAGCTGGTCTCTGTGTGCAA 59.819 50.000 0.00 0.00 0.00 4.08
930 1112 8.718656 ACCATAAGCTACCTAATCAAGAAAGAT 58.281 33.333 0.00 0.00 0.00 2.40
936 1118 6.540189 GCTACCTAATCAAGAAAGATGAGCAA 59.460 38.462 0.00 0.00 0.00 3.91
943 1125 3.413846 AGAAAGATGAGCAACAGAGCA 57.586 42.857 0.00 0.00 36.85 4.26
1372 1557 3.117322 TGCTCCTCCTCTAGTTCAGCTAT 60.117 47.826 0.00 0.00 0.00 2.97
1393 1624 9.794719 AGCTATGAGTGTATATTAGACAGTACA 57.205 33.333 0.00 1.32 30.51 2.90
1455 1696 3.001228 GCGAATGAAATGACAGCGTATCA 59.999 43.478 0.00 0.00 0.00 2.15
1916 4142 2.491897 GGATGCATTCATGGCGCCA 61.492 57.895 34.80 34.80 31.96 5.69
2115 4376 1.078143 GGAGATCAAGGCCAAGCGT 60.078 57.895 5.01 0.00 0.00 5.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.717032 CTCAGGTTCGGATATCCCCA 58.283 55.000 16.36 0.00 0.00 4.96
229 357 1.146263 GGTACGGCATCCAAGGAGG 59.854 63.158 0.00 0.00 39.47 4.30
265 418 0.669619 TACAGTCAAAGACCGACGCA 59.330 50.000 0.00 0.00 38.46 5.24
307 464 2.363788 TCGGACATCTTTTCCAGTCG 57.636 50.000 0.00 0.00 31.94 4.18
415 597 0.455464 CGATGCCGACAGTAACGACA 60.455 55.000 0.00 0.00 38.22 4.35
493 675 2.701107 GAGAGTAGCCACAACTTTCCC 58.299 52.381 0.00 0.00 0.00 3.97
494 676 2.338500 CGAGAGTAGCCACAACTTTCC 58.662 52.381 0.00 0.00 0.00 3.13
495 677 2.338500 CCGAGAGTAGCCACAACTTTC 58.662 52.381 0.00 0.00 0.00 2.62
496 678 1.002087 CCCGAGAGTAGCCACAACTTT 59.998 52.381 0.00 0.00 0.00 2.66
497 679 0.608640 CCCGAGAGTAGCCACAACTT 59.391 55.000 0.00 0.00 0.00 2.66
498 680 0.542232 ACCCGAGAGTAGCCACAACT 60.542 55.000 0.00 0.00 0.00 3.16
499 681 0.389948 CACCCGAGAGTAGCCACAAC 60.390 60.000 0.00 0.00 0.00 3.32
501 683 0.038599 TACACCCGAGAGTAGCCACA 59.961 55.000 0.00 0.00 0.00 4.17
502 684 0.739561 CTACACCCGAGAGTAGCCAC 59.260 60.000 0.00 0.00 31.68 5.01
503 685 0.395311 CCTACACCCGAGAGTAGCCA 60.395 60.000 0.00 0.00 36.25 4.75
504 686 0.395448 ACCTACACCCGAGAGTAGCC 60.395 60.000 0.00 0.00 36.25 3.93
506 688 3.272574 TGTACCTACACCCGAGAGTAG 57.727 52.381 0.00 0.00 37.04 2.57
517 699 1.001181 GCAAACTCGGGTGTACCTACA 59.999 52.381 0.00 0.00 36.97 2.74
518 700 1.001181 TGCAAACTCGGGTGTACCTAC 59.999 52.381 0.00 0.00 36.97 3.18
519 701 1.340088 TGCAAACTCGGGTGTACCTA 58.660 50.000 0.00 0.00 36.97 3.08
520 702 0.470766 TTGCAAACTCGGGTGTACCT 59.529 50.000 0.00 0.00 36.97 3.08
521 703 1.310904 TTTGCAAACTCGGGTGTACC 58.689 50.000 8.05 0.00 0.00 3.34
522 704 2.356695 AGTTTTGCAAACTCGGGTGTAC 59.643 45.455 12.39 4.03 0.00 2.90
523 705 2.645802 AGTTTTGCAAACTCGGGTGTA 58.354 42.857 12.39 0.00 0.00 2.90
524 706 1.470051 AGTTTTGCAAACTCGGGTGT 58.530 45.000 12.39 0.00 0.00 4.16
525 707 2.577449 AAGTTTTGCAAACTCGGGTG 57.423 45.000 12.39 0.00 0.00 4.61
526 708 2.494073 TCAAAGTTTTGCAAACTCGGGT 59.506 40.909 12.39 0.00 38.05 5.28
527 709 3.157932 TCAAAGTTTTGCAAACTCGGG 57.842 42.857 12.39 2.23 38.05 5.14
528 710 5.523013 TTTTCAAAGTTTTGCAAACTCGG 57.477 34.783 12.39 8.38 38.05 4.63
529 711 7.006387 CACATTTTTCAAAGTTTTGCAAACTCG 59.994 33.333 12.39 7.80 34.08 4.18
530 712 8.014517 TCACATTTTTCAAAGTTTTGCAAACTC 58.985 29.630 12.39 8.34 34.08 3.01
531 713 7.869800 TCACATTTTTCAAAGTTTTGCAAACT 58.130 26.923 12.39 9.72 34.08 2.66
532 714 8.672214 ATCACATTTTTCAAAGTTTTGCAAAC 57.328 26.923 12.39 7.48 34.08 2.93
541 723 9.665719 ACCTTGTTTTATCACATTTTTCAAAGT 57.334 25.926 0.00 0.00 0.00 2.66
543 725 9.103861 GGACCTTGTTTTATCACATTTTTCAAA 57.896 29.630 0.00 0.00 0.00 2.69
544 726 8.260818 TGGACCTTGTTTTATCACATTTTTCAA 58.739 29.630 0.00 0.00 0.00 2.69
545 727 7.786030 TGGACCTTGTTTTATCACATTTTTCA 58.214 30.769 0.00 0.00 0.00 2.69
546 728 8.655651 TTGGACCTTGTTTTATCACATTTTTC 57.344 30.769 0.00 0.00 0.00 2.29
547 729 9.454859 TTTTGGACCTTGTTTTATCACATTTTT 57.545 25.926 0.00 0.00 0.00 1.94
548 730 9.454859 TTTTTGGACCTTGTTTTATCACATTTT 57.545 25.926 0.00 0.00 0.00 1.82
549 731 9.625747 ATTTTTGGACCTTGTTTTATCACATTT 57.374 25.926 0.00 0.00 0.00 2.32
550 732 9.625747 AATTTTTGGACCTTGTTTTATCACATT 57.374 25.926 0.00 0.00 0.00 2.71
551 733 9.271828 GAATTTTTGGACCTTGTTTTATCACAT 57.728 29.630 0.00 0.00 0.00 3.21
552 734 8.482128 AGAATTTTTGGACCTTGTTTTATCACA 58.518 29.630 0.00 0.00 0.00 3.58
553 735 8.764287 CAGAATTTTTGGACCTTGTTTTATCAC 58.236 33.333 0.00 0.00 0.00 3.06
554 736 8.700051 TCAGAATTTTTGGACCTTGTTTTATCA 58.300 29.630 0.00 0.00 0.00 2.15
555 737 9.541143 TTCAGAATTTTTGGACCTTGTTTTATC 57.459 29.630 0.00 0.00 0.00 1.75
556 738 9.898152 TTTCAGAATTTTTGGACCTTGTTTTAT 57.102 25.926 0.00 0.00 0.00 1.40
557 739 9.898152 ATTTCAGAATTTTTGGACCTTGTTTTA 57.102 25.926 0.00 0.00 0.00 1.52
558 740 8.806429 ATTTCAGAATTTTTGGACCTTGTTTT 57.194 26.923 0.00 0.00 0.00 2.43
559 741 8.806429 AATTTCAGAATTTTTGGACCTTGTTT 57.194 26.923 0.00 0.00 31.48 2.83
560 742 8.806429 AAATTTCAGAATTTTTGGACCTTGTT 57.194 26.923 0.00 0.00 41.48 2.83
561 743 7.224557 CGAAATTTCAGAATTTTTGGACCTTGT 59.775 33.333 17.99 0.00 43.61 3.16
562 744 7.437862 TCGAAATTTCAGAATTTTTGGACCTTG 59.562 33.333 17.99 0.00 43.61 3.61
563 745 7.496747 TCGAAATTTCAGAATTTTTGGACCTT 58.503 30.769 17.99 0.00 43.61 3.50
564 746 7.014230 TCTCGAAATTTCAGAATTTTTGGACCT 59.986 33.333 17.99 0.00 43.61 3.85
565 747 7.114953 GTCTCGAAATTTCAGAATTTTTGGACC 59.885 37.037 17.99 0.00 43.61 4.46
566 748 7.647715 TGTCTCGAAATTTCAGAATTTTTGGAC 59.352 33.333 17.99 18.80 43.61 4.02
567 749 7.711846 TGTCTCGAAATTTCAGAATTTTTGGA 58.288 30.769 17.99 9.32 43.61 3.53
568 750 7.928908 TGTCTCGAAATTTCAGAATTTTTGG 57.071 32.000 17.99 6.43 43.61 3.28
569 751 8.806634 TGTTGTCTCGAAATTTCAGAATTTTTG 58.193 29.630 17.99 10.00 43.61 2.44
570 752 8.925161 TGTTGTCTCGAAATTTCAGAATTTTT 57.075 26.923 17.99 0.00 43.61 1.94
571 753 8.925161 TTGTTGTCTCGAAATTTCAGAATTTT 57.075 26.923 17.99 3.19 43.61 1.82
572 754 7.168135 GCTTGTTGTCTCGAAATTTCAGAATTT 59.832 33.333 17.99 0.00 45.62 1.82
573 755 6.638468 GCTTGTTGTCTCGAAATTTCAGAATT 59.362 34.615 17.99 0.00 37.06 2.17
574 756 6.016777 AGCTTGTTGTCTCGAAATTTCAGAAT 60.017 34.615 17.99 0.00 0.00 2.40
575 757 5.296780 AGCTTGTTGTCTCGAAATTTCAGAA 59.703 36.000 17.99 1.17 0.00 3.02
576 758 4.816385 AGCTTGTTGTCTCGAAATTTCAGA 59.184 37.500 17.99 15.20 0.00 3.27
577 759 5.100751 AGCTTGTTGTCTCGAAATTTCAG 57.899 39.130 17.99 13.39 0.00 3.02
578 760 5.065859 TGAAGCTTGTTGTCTCGAAATTTCA 59.934 36.000 17.99 4.84 0.00 2.69
579 761 5.510671 TGAAGCTTGTTGTCTCGAAATTTC 58.489 37.500 2.10 8.20 0.00 2.17
580 762 5.499139 TGAAGCTTGTTGTCTCGAAATTT 57.501 34.783 2.10 0.00 0.00 1.82
581 763 5.239306 TGATGAAGCTTGTTGTCTCGAAATT 59.761 36.000 2.10 0.00 0.00 1.82
582 764 4.756642 TGATGAAGCTTGTTGTCTCGAAAT 59.243 37.500 2.10 0.00 0.00 2.17
583 765 4.126437 TGATGAAGCTTGTTGTCTCGAAA 58.874 39.130 2.10 0.00 0.00 3.46
584 766 3.727726 TGATGAAGCTTGTTGTCTCGAA 58.272 40.909 2.10 0.00 0.00 3.71
585 767 3.385193 TGATGAAGCTTGTTGTCTCGA 57.615 42.857 2.10 0.00 0.00 4.04
586 768 3.496130 ACTTGATGAAGCTTGTTGTCTCG 59.504 43.478 2.10 0.00 31.68 4.04
587 769 4.274459 ACACTTGATGAAGCTTGTTGTCTC 59.726 41.667 2.10 0.00 31.68 3.36
588 770 4.202441 ACACTTGATGAAGCTTGTTGTCT 58.798 39.130 2.10 0.00 31.68 3.41
589 771 4.558538 ACACTTGATGAAGCTTGTTGTC 57.441 40.909 2.10 0.00 31.68 3.18
590 772 4.989279 AACACTTGATGAAGCTTGTTGT 57.011 36.364 2.10 0.00 30.87 3.32
591 773 5.342433 TCAAACACTTGATGAAGCTTGTTG 58.658 37.500 2.10 0.00 36.62 3.33
592 774 5.581126 TCAAACACTTGATGAAGCTTGTT 57.419 34.783 2.10 0.00 36.62 2.83
593 775 5.126061 AGTTCAAACACTTGATGAAGCTTGT 59.874 36.000 2.10 0.00 41.22 3.16
594 776 5.585390 AGTTCAAACACTTGATGAAGCTTG 58.415 37.500 2.10 0.00 41.22 4.01
595 777 5.841957 AGTTCAAACACTTGATGAAGCTT 57.158 34.783 0.00 0.00 41.22 3.74
596 778 5.841957 AAGTTCAAACACTTGATGAAGCT 57.158 34.783 0.00 0.00 41.22 3.74
597 779 6.291269 CGAAAAGTTCAAACACTTGATGAAGC 60.291 38.462 0.00 0.00 41.22 3.86
598 780 6.291269 GCGAAAAGTTCAAACACTTGATGAAG 60.291 38.462 0.00 0.00 41.22 3.02
599 781 5.514914 GCGAAAAGTTCAAACACTTGATGAA 59.485 36.000 0.00 0.00 41.22 2.57
600 782 5.034152 GCGAAAAGTTCAAACACTTGATGA 58.966 37.500 0.00 0.00 41.22 2.92
601 783 4.797868 TGCGAAAAGTTCAAACACTTGATG 59.202 37.500 0.00 0.00 41.22 3.07
602 784 4.992688 TGCGAAAAGTTCAAACACTTGAT 58.007 34.783 0.00 0.00 41.22 2.57
603 785 4.427096 TGCGAAAAGTTCAAACACTTGA 57.573 36.364 0.00 0.00 39.87 3.02
604 786 5.508124 TTTGCGAAAAGTTCAAACACTTG 57.492 34.783 0.00 0.00 37.07 3.16
605 787 6.720012 ATTTTGCGAAAAGTTCAAACACTT 57.280 29.167 2.54 0.00 38.74 3.16
606 788 6.720012 AATTTTGCGAAAAGTTCAAACACT 57.280 29.167 2.54 0.00 33.22 3.55
614 796 7.532682 TTTAGCTGAAATTTTGCGAAAAGTT 57.467 28.000 16.54 5.13 40.85 2.66
615 797 7.532682 TTTTAGCTGAAATTTTGCGAAAAGT 57.467 28.000 21.61 0.00 36.76 2.66
616 798 7.902403 TGTTTTTAGCTGAAATTTTGCGAAAAG 59.098 29.630 22.88 0.00 40.36 2.27
617 799 7.743104 TGTTTTTAGCTGAAATTTTGCGAAAA 58.257 26.923 21.61 21.61 38.68 2.29
618 800 7.295952 TGTTTTTAGCTGAAATTTTGCGAAA 57.704 28.000 15.60 15.60 31.57 3.46
619 801 6.893958 TGTTTTTAGCTGAAATTTTGCGAA 57.106 29.167 4.30 9.04 0.00 4.70
620 802 6.311445 TGTTGTTTTTAGCTGAAATTTTGCGA 59.689 30.769 4.30 4.35 0.00 5.10
621 803 6.473521 TGTTGTTTTTAGCTGAAATTTTGCG 58.526 32.000 4.30 0.00 0.00 4.85
622 804 7.587392 GGATGTTGTTTTTAGCTGAAATTTTGC 59.413 33.333 4.30 8.49 0.00 3.68
623 805 7.793427 CGGATGTTGTTTTTAGCTGAAATTTTG 59.207 33.333 4.30 0.00 0.00 2.44
624 806 7.708752 TCGGATGTTGTTTTTAGCTGAAATTTT 59.291 29.630 4.30 0.00 0.00 1.82
625 807 7.206687 TCGGATGTTGTTTTTAGCTGAAATTT 58.793 30.769 4.30 0.00 0.00 1.82
626 808 6.744112 TCGGATGTTGTTTTTAGCTGAAATT 58.256 32.000 4.30 0.00 0.00 1.82
627 809 6.325919 TCGGATGTTGTTTTTAGCTGAAAT 57.674 33.333 4.30 0.00 0.00 2.17
628 810 5.278266 CCTCGGATGTTGTTTTTAGCTGAAA 60.278 40.000 0.00 0.00 0.00 2.69
629 811 4.215399 CCTCGGATGTTGTTTTTAGCTGAA 59.785 41.667 0.00 0.00 0.00 3.02
630 812 3.751175 CCTCGGATGTTGTTTTTAGCTGA 59.249 43.478 0.00 0.00 0.00 4.26
631 813 3.751175 TCCTCGGATGTTGTTTTTAGCTG 59.249 43.478 0.00 0.00 0.00 4.24
632 814 4.003648 CTCCTCGGATGTTGTTTTTAGCT 58.996 43.478 0.00 0.00 0.00 3.32
633 815 3.426292 GCTCCTCGGATGTTGTTTTTAGC 60.426 47.826 0.00 0.00 0.00 3.09
634 816 4.003648 AGCTCCTCGGATGTTGTTTTTAG 58.996 43.478 0.00 0.00 0.00 1.85
635 817 4.000988 GAGCTCCTCGGATGTTGTTTTTA 58.999 43.478 0.87 0.00 0.00 1.52
636 818 2.814336 GAGCTCCTCGGATGTTGTTTTT 59.186 45.455 0.87 0.00 0.00 1.94
637 819 2.039084 AGAGCTCCTCGGATGTTGTTTT 59.961 45.455 10.93 0.00 35.36 2.43
638 820 1.625818 AGAGCTCCTCGGATGTTGTTT 59.374 47.619 10.93 0.00 35.36 2.83
639 821 1.270907 AGAGCTCCTCGGATGTTGTT 58.729 50.000 10.93 0.00 35.36 2.83
640 822 1.270907 AAGAGCTCCTCGGATGTTGT 58.729 50.000 10.93 0.00 35.36 3.32
641 823 2.166459 TGTAAGAGCTCCTCGGATGTTG 59.834 50.000 10.93 0.00 35.36 3.33
642 824 2.457598 TGTAAGAGCTCCTCGGATGTT 58.542 47.619 10.93 0.00 35.36 2.71
643 825 2.145397 TGTAAGAGCTCCTCGGATGT 57.855 50.000 10.93 0.00 35.36 3.06
644 826 3.526931 TTTGTAAGAGCTCCTCGGATG 57.473 47.619 10.93 0.00 35.36 3.51
645 827 4.553330 TTTTTGTAAGAGCTCCTCGGAT 57.447 40.909 10.93 0.00 35.36 4.18
665 847 7.964011 CACTGTTTGAGCATTGATTTTGTTTTT 59.036 29.630 0.00 0.00 0.00 1.94
666 848 7.465989 CACTGTTTGAGCATTGATTTTGTTTT 58.534 30.769 0.00 0.00 0.00 2.43
667 849 6.457257 GCACTGTTTGAGCATTGATTTTGTTT 60.457 34.615 0.00 0.00 32.44 2.83
668 850 5.006941 GCACTGTTTGAGCATTGATTTTGTT 59.993 36.000 0.00 0.00 32.44 2.83
669 851 4.508861 GCACTGTTTGAGCATTGATTTTGT 59.491 37.500 0.00 0.00 32.44 2.83
670 852 4.508492 TGCACTGTTTGAGCATTGATTTTG 59.492 37.500 0.00 0.00 37.35 2.44
671 853 4.508861 GTGCACTGTTTGAGCATTGATTTT 59.491 37.500 10.32 0.00 43.59 1.82
672 854 4.053295 GTGCACTGTTTGAGCATTGATTT 58.947 39.130 10.32 0.00 43.59 2.17
673 855 3.068448 TGTGCACTGTTTGAGCATTGATT 59.932 39.130 19.41 0.00 43.59 2.57
674 856 2.624364 TGTGCACTGTTTGAGCATTGAT 59.376 40.909 19.41 0.00 43.59 2.57
675 857 2.022934 TGTGCACTGTTTGAGCATTGA 58.977 42.857 19.41 0.00 43.59 2.57
676 858 2.495409 TGTGCACTGTTTGAGCATTG 57.505 45.000 19.41 0.00 43.59 2.82
677 859 2.800629 GCTTGTGCACTGTTTGAGCATT 60.801 45.455 19.41 0.00 43.59 3.56
678 860 1.269413 GCTTGTGCACTGTTTGAGCAT 60.269 47.619 19.41 0.00 43.59 3.79
679 861 0.101040 GCTTGTGCACTGTTTGAGCA 59.899 50.000 19.41 0.00 39.83 4.26
680 862 0.101040 TGCTTGTGCACTGTTTGAGC 59.899 50.000 19.41 16.23 45.31 4.26
691 873 3.984508 ATCAATGCTCTATGCTTGTGC 57.015 42.857 0.00 0.00 43.37 4.57
692 874 6.097356 ACAAAATCAATGCTCTATGCTTGTG 58.903 36.000 0.00 0.00 43.37 3.33
693 875 6.276832 ACAAAATCAATGCTCTATGCTTGT 57.723 33.333 0.00 0.00 43.37 3.16
694 876 7.591006 AAACAAAATCAATGCTCTATGCTTG 57.409 32.000 0.00 0.00 43.37 4.01
695 877 8.611654 AAAAACAAAATCAATGCTCTATGCTT 57.388 26.923 0.00 0.00 43.37 3.91
718 900 0.687354 AGAGGAGCTCTCGGCAAAAA 59.313 50.000 14.64 0.00 46.82 1.94
719 901 0.036952 CAGAGGAGCTCTCGGCAAAA 60.037 55.000 14.64 0.00 46.82 2.44
720 902 0.900182 TCAGAGGAGCTCTCGGCAAA 60.900 55.000 14.64 0.00 46.82 3.68
721 903 0.685785 ATCAGAGGAGCTCTCGGCAA 60.686 55.000 14.64 0.00 46.82 4.52
722 904 1.076412 ATCAGAGGAGCTCTCGGCA 60.076 57.895 14.64 0.00 46.82 5.69
723 905 1.363443 CATCAGAGGAGCTCTCGGC 59.637 63.158 14.64 0.00 46.82 5.54
724 906 1.110442 AACATCAGAGGAGCTCTCGG 58.890 55.000 14.64 9.91 46.82 4.63
725 907 4.582701 AATAACATCAGAGGAGCTCTCG 57.417 45.455 14.64 6.26 46.82 4.04
747 929 6.247176 GCTTTCTGCGAAAAATTCACAAAAA 58.753 32.000 5.49 0.00 0.00 1.94
748 930 5.794720 GCTTTCTGCGAAAAATTCACAAAA 58.205 33.333 5.49 0.00 0.00 2.44
749 931 5.388225 GCTTTCTGCGAAAAATTCACAAA 57.612 34.783 5.49 0.00 0.00 2.83
763 945 5.224888 TCATCAAATGTTCAAGCTTTCTGC 58.775 37.500 0.00 0.00 43.29 4.26
764 946 6.921857 ACTTCATCAAATGTTCAAGCTTTCTG 59.078 34.615 0.00 0.00 0.00 3.02
765 947 7.047460 ACTTCATCAAATGTTCAAGCTTTCT 57.953 32.000 0.00 0.00 0.00 2.52
766 948 7.704789 AACTTCATCAAATGTTCAAGCTTTC 57.295 32.000 0.00 0.00 0.00 2.62
767 949 7.765360 TGAAACTTCATCAAATGTTCAAGCTTT 59.235 29.630 0.00 0.00 31.01 3.51
768 950 7.267128 TGAAACTTCATCAAATGTTCAAGCTT 58.733 30.769 0.00 0.00 31.01 3.74
769 951 6.808829 TGAAACTTCATCAAATGTTCAAGCT 58.191 32.000 0.00 0.00 31.01 3.74
770 952 7.170320 ACATGAAACTTCATCAAATGTTCAAGC 59.830 33.333 0.00 0.00 45.62 4.01
771 953 8.583810 ACATGAAACTTCATCAAATGTTCAAG 57.416 30.769 0.00 0.00 45.62 3.02
772 954 7.652909 GGACATGAAACTTCATCAAATGTTCAA 59.347 33.333 0.00 0.00 45.62 2.69
773 955 7.147312 GGACATGAAACTTCATCAAATGTTCA 58.853 34.615 0.00 0.00 45.62 3.18
774 956 6.587608 GGGACATGAAACTTCATCAAATGTTC 59.412 38.462 0.00 0.00 45.62 3.18
775 957 6.458210 GGGACATGAAACTTCATCAAATGTT 58.542 36.000 0.00 0.00 45.62 2.71
776 958 5.047092 GGGGACATGAAACTTCATCAAATGT 60.047 40.000 0.00 0.00 45.62 2.71
777 959 5.047164 TGGGGACATGAAACTTCATCAAATG 60.047 40.000 0.00 0.00 45.62 2.32
778 960 5.085920 TGGGGACATGAAACTTCATCAAAT 58.914 37.500 0.00 0.00 45.62 2.32
779 961 4.478203 TGGGGACATGAAACTTCATCAAA 58.522 39.130 0.00 0.00 45.62 2.69
780 962 4.111255 TGGGGACATGAAACTTCATCAA 57.889 40.909 0.00 0.00 45.62 2.57
781 963 3.805066 TGGGGACATGAAACTTCATCA 57.195 42.857 0.00 0.00 45.62 3.07
782 964 5.665916 ATTTGGGGACATGAAACTTCATC 57.334 39.130 0.00 0.00 45.62 2.92
784 966 5.365025 TGAAATTTGGGGACATGAAACTTCA 59.635 36.000 0.00 0.00 42.32 3.02
785 967 5.852827 TGAAATTTGGGGACATGAAACTTC 58.147 37.500 0.00 0.00 42.32 3.01
786 968 5.602145 TCTGAAATTTGGGGACATGAAACTT 59.398 36.000 0.00 0.00 42.32 2.66
787 969 5.147032 TCTGAAATTTGGGGACATGAAACT 58.853 37.500 0.00 0.00 42.32 2.66
788 970 5.467035 TCTGAAATTTGGGGACATGAAAC 57.533 39.130 0.00 0.00 42.32 2.78
789 971 6.684897 AATCTGAAATTTGGGGACATGAAA 57.315 33.333 0.00 0.00 42.32 2.69
790 972 6.684897 AAATCTGAAATTTGGGGACATGAA 57.315 33.333 0.00 0.00 42.32 2.57
791 973 6.684897 AAAATCTGAAATTTGGGGACATGA 57.315 33.333 0.00 0.00 42.32 3.07
846 1028 3.215975 CCTACACCCGAGTTTGGAAAAA 58.784 45.455 0.00 0.00 0.00 1.94
847 1029 2.173143 ACCTACACCCGAGTTTGGAAAA 59.827 45.455 0.00 0.00 0.00 2.29
848 1030 1.770061 ACCTACACCCGAGTTTGGAAA 59.230 47.619 0.00 0.00 0.00 3.13
849 1031 1.426751 ACCTACACCCGAGTTTGGAA 58.573 50.000 0.00 0.00 0.00 3.53
850 1032 1.895131 GTACCTACACCCGAGTTTGGA 59.105 52.381 0.00 0.00 0.00 3.53
851 1033 1.619827 TGTACCTACACCCGAGTTTGG 59.380 52.381 0.00 0.00 0.00 3.28
862 1044 2.840038 TCTACTCTCGGGTGTACCTACA 59.160 50.000 0.44 0.00 36.97 2.74
863 1045 3.550437 TCTACTCTCGGGTGTACCTAC 57.450 52.381 0.44 0.00 36.97 3.18
864 1046 4.574674 TTTCTACTCTCGGGTGTACCTA 57.425 45.455 0.44 0.00 36.97 3.08
865 1047 3.446442 TTTCTACTCTCGGGTGTACCT 57.554 47.619 0.44 0.00 36.97 3.08
866 1048 3.675502 GCTTTTCTACTCTCGGGTGTACC 60.676 52.174 0.00 0.00 0.00 3.34
867 1049 3.193056 AGCTTTTCTACTCTCGGGTGTAC 59.807 47.826 0.00 0.00 0.00 2.90
868 1050 3.192844 CAGCTTTTCTACTCTCGGGTGTA 59.807 47.826 0.00 0.00 0.00 2.90
869 1051 2.028930 CAGCTTTTCTACTCTCGGGTGT 60.029 50.000 0.00 0.00 0.00 4.16
870 1052 2.611518 CAGCTTTTCTACTCTCGGGTG 58.388 52.381 0.00 0.00 0.00 4.61
871 1053 1.550976 CCAGCTTTTCTACTCTCGGGT 59.449 52.381 0.00 0.00 0.00 5.28
872 1054 1.550976 ACCAGCTTTTCTACTCTCGGG 59.449 52.381 0.00 0.00 0.00 5.14
873 1055 2.494073 AGACCAGCTTTTCTACTCTCGG 59.506 50.000 0.00 0.00 0.00 4.63
874 1056 3.442273 AGAGACCAGCTTTTCTACTCTCG 59.558 47.826 0.00 0.00 34.24 4.04
875 1057 4.219725 ACAGAGACCAGCTTTTCTACTCTC 59.780 45.833 0.00 0.00 31.55 3.20
876 1058 4.021544 CACAGAGACCAGCTTTTCTACTCT 60.022 45.833 0.00 0.00 32.96 3.24
877 1059 4.241681 CACAGAGACCAGCTTTTCTACTC 58.758 47.826 0.00 0.00 0.00 2.59
878 1060 3.643792 ACACAGAGACCAGCTTTTCTACT 59.356 43.478 0.00 0.00 0.00 2.57
879 1061 3.743396 CACACAGAGACCAGCTTTTCTAC 59.257 47.826 0.00 0.00 0.00 2.59
880 1062 3.803715 GCACACAGAGACCAGCTTTTCTA 60.804 47.826 0.00 0.00 0.00 2.10
881 1063 2.843701 CACACAGAGACCAGCTTTTCT 58.156 47.619 0.00 0.00 0.00 2.52
882 1064 1.265365 GCACACAGAGACCAGCTTTTC 59.735 52.381 0.00 0.00 0.00 2.29
883 1065 1.312815 GCACACAGAGACCAGCTTTT 58.687 50.000 0.00 0.00 0.00 2.27
884 1066 0.181114 TGCACACAGAGACCAGCTTT 59.819 50.000 0.00 0.00 0.00 3.51
885 1067 0.181114 TTGCACACAGAGACCAGCTT 59.819 50.000 0.00 0.00 0.00 3.74
886 1068 0.533755 GTTGCACACAGAGACCAGCT 60.534 55.000 0.00 0.00 0.00 4.24
887 1069 1.510480 GGTTGCACACAGAGACCAGC 61.510 60.000 0.00 0.00 0.00 4.85
888 1070 0.179048 TGGTTGCACACAGAGACCAG 60.179 55.000 0.00 0.00 35.58 4.00
889 1071 0.473755 ATGGTTGCACACAGAGACCA 59.526 50.000 6.63 6.63 43.82 4.02
890 1072 2.472695 TATGGTTGCACACAGAGACC 57.527 50.000 0.00 0.00 0.00 3.85
891 1073 2.160417 GCTTATGGTTGCACACAGAGAC 59.840 50.000 0.00 0.00 0.00 3.36
892 1074 2.038952 AGCTTATGGTTGCACACAGAGA 59.961 45.455 0.00 0.00 0.00 3.10
893 1075 2.430465 AGCTTATGGTTGCACACAGAG 58.570 47.619 0.00 0.00 0.00 3.35
894 1076 2.566833 AGCTTATGGTTGCACACAGA 57.433 45.000 0.00 0.00 0.00 3.41
895 1077 2.420022 GGTAGCTTATGGTTGCACACAG 59.580 50.000 0.00 0.00 0.00 3.66
896 1078 2.039746 AGGTAGCTTATGGTTGCACACA 59.960 45.455 0.00 0.00 0.00 3.72
897 1079 2.711542 AGGTAGCTTATGGTTGCACAC 58.288 47.619 0.00 0.00 0.00 3.82
898 1080 4.561500 TTAGGTAGCTTATGGTTGCACA 57.438 40.909 0.00 0.00 0.00 4.57
899 1081 5.123227 TGATTAGGTAGCTTATGGTTGCAC 58.877 41.667 0.00 0.00 0.00 4.57
900 1082 5.366482 TGATTAGGTAGCTTATGGTTGCA 57.634 39.130 0.00 0.00 0.00 4.08
901 1083 6.055588 TCTTGATTAGGTAGCTTATGGTTGC 58.944 40.000 0.00 0.00 0.00 4.17
902 1084 8.506168 TTTCTTGATTAGGTAGCTTATGGTTG 57.494 34.615 0.00 0.00 0.00 3.77
903 1085 8.548877 TCTTTCTTGATTAGGTAGCTTATGGTT 58.451 33.333 0.00 0.00 0.00 3.67
904 1086 8.090788 TCTTTCTTGATTAGGTAGCTTATGGT 57.909 34.615 0.00 0.00 0.00 3.55
930 1112 2.042686 AAACACTGCTCTGTTGCTCA 57.957 45.000 0.98 0.00 34.50 4.26
936 1118 3.498397 CGGTTGATTAAACACTGCTCTGT 59.502 43.478 0.00 0.00 40.86 3.41
943 1125 3.740115 AGCTCACGGTTGATTAAACACT 58.260 40.909 0.00 0.00 40.86 3.55
1217 1401 3.626924 GGTGGGCAGTGACGAGGT 61.627 66.667 0.00 0.00 0.00 3.85
1372 1557 9.457436 TGAACTGTACTGTCTAATATACACTCA 57.543 33.333 5.81 0.00 0.00 3.41
1393 1624 8.721478 CAACAGTAAGCAACTTATGTATGAACT 58.279 33.333 0.00 0.00 35.76 3.01
1455 1696 6.183360 GCAGTCTACGTACATAAAAGCACATT 60.183 38.462 0.00 0.00 0.00 2.71
1710 3929 3.514362 CGTTTGGGCCGGGTATGC 61.514 66.667 2.18 0.00 0.00 3.14
1916 4142 4.101448 GCCAGAGCGGGGACACAT 62.101 66.667 0.00 0.00 34.06 3.21
2115 4376 2.743538 GCACTGACATGAGCGGCA 60.744 61.111 0.00 0.00 0.00 5.69
2217 4515 2.280552 CCATGCCAAAGCCTGCAGT 61.281 57.895 13.81 0.00 41.46 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.