Multiple sequence alignment - TraesCS1A01G376600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G376600 chr1A 100.000 6633 0 0 1 6633 550638900 550632268 0.000000e+00 12249.0
1 TraesCS1A01G376600 chr1A 94.000 50 3 0 5191 5240 550633596 550633547 7.130000e-10 76.8
2 TraesCS1A01G376600 chr1A 94.000 50 3 0 5305 5354 550633710 550633661 7.130000e-10 76.8
3 TraesCS1A01G376600 chr1D 95.790 4988 172 19 126 5086 458147906 458142930 0.000000e+00 8013.0
4 TraesCS1A01G376600 chr1D 91.216 296 17 1 5240 5535 458142591 458142305 1.730000e-105 394.0
5 TraesCS1A01G376600 chr1D 90.661 257 23 1 5085 5341 458142841 458142586 2.290000e-89 340.0
6 TraesCS1A01G376600 chr1D 82.969 229 34 5 3214 3440 386257562 386257787 1.130000e-47 202.0
7 TraesCS1A01G376600 chr1D 81.673 251 30 8 5510 5748 458142285 458142039 1.890000e-45 195.0
8 TraesCS1A01G376600 chr1D 91.045 134 10 1 6323 6454 458141662 458141529 5.280000e-41 180.0
9 TraesCS1A01G376600 chr1D 85.185 135 17 3 6501 6633 458141421 458141288 1.160000e-27 135.0
10 TraesCS1A01G376600 chr1D 91.429 70 6 0 5186 5255 458142531 458142462 5.470000e-16 97.1
11 TraesCS1A01G376600 chr1D 97.727 44 1 0 5186 5229 458142627 458142584 7.130000e-10 76.8
12 TraesCS1A01G376600 chr1B 94.866 2766 117 13 2506 5255 628618887 628616131 0.000000e+00 4298.0
13 TraesCS1A01G376600 chr1B 97.136 1257 36 0 600 1856 628626587 628625331 0.000000e+00 2122.0
14 TraesCS1A01G376600 chr1B 94.466 253 14 0 1 253 628648138 628647886 2.240000e-104 390.0
15 TraesCS1A01G376600 chr1B 96.512 172 6 0 378 549 628626758 628626587 1.090000e-72 285.0
16 TraesCS1A01G376600 chr1B 87.786 131 5 4 6500 6619 628606715 628606585 6.930000e-30 143.0
17 TraesCS1A01G376600 chr1B 93.333 90 4 1 268 355 628626839 628626750 1.500000e-26 132.0
18 TraesCS1A01G376600 chr1B 84.874 119 18 0 5137 5255 628615635 628615517 3.250000e-23 121.0
19 TraesCS1A01G376600 chr1B 96.429 56 2 0 2109 2164 628618941 628618886 7.080000e-15 93.5
20 TraesCS1A01G376600 chr1B 77.457 173 18 11 6284 6445 628607002 628606840 4.260000e-12 84.2
21 TraesCS1A01G376600 chr4D 83.244 1122 174 12 1001 2114 1821950 1823065 0.000000e+00 1018.0
22 TraesCS1A01G376600 chr4D 75.083 2115 488 35 2821 4914 1823272 1825368 0.000000e+00 950.0
23 TraesCS1A01G376600 chr4D 94.000 200 12 0 5830 6029 11504115 11504314 3.010000e-78 303.0
24 TraesCS1A01G376600 chr4D 94.000 200 12 0 5830 6029 76611943 76612142 3.010000e-78 303.0
25 TraesCS1A01G376600 chr4D 78.814 236 36 11 4808 5035 2889493 2889722 5.360000e-31 147.0
26 TraesCS1A01G376600 chr4D 75.312 320 59 16 4817 5124 2117065 2116754 1.160000e-27 135.0
27 TraesCS1A01G376600 chr4B 83.140 1121 177 11 1001 2114 3732446 3733561 0.000000e+00 1013.0
28 TraesCS1A01G376600 chr4B 83.908 1044 159 8 1001 2040 3484221 3483183 0.000000e+00 989.0
29 TraesCS1A01G376600 chr4B 83.621 1044 163 7 1001 2040 3514195 3513156 0.000000e+00 974.0
30 TraesCS1A01G376600 chr4B 82.438 1042 159 7 1001 2040 3454107 3453088 0.000000e+00 889.0
31 TraesCS1A01G376600 chr4B 75.918 1661 355 35 2825 4458 3733780 3735422 0.000000e+00 809.0
32 TraesCS1A01G376600 chr4B 96.610 59 2 0 1982 2040 3426309 3426251 1.520000e-16 99.0
33 TraesCS1A01G376600 chrUn 82.746 1136 183 11 987 2114 47630216 47631346 0.000000e+00 1000.0
34 TraesCS1A01G376600 chrUn 83.633 1057 163 8 990 2040 48044872 48045924 0.000000e+00 985.0
35 TraesCS1A01G376600 chrUn 83.538 1057 164 8 990 2040 48075143 48076195 0.000000e+00 979.0
36 TraesCS1A01G376600 chrUn 75.071 2122 471 49 2825 4914 47631565 47633660 0.000000e+00 935.0
37 TraesCS1A01G376600 chrUn 74.291 2116 495 43 2825 4914 47452166 47454258 0.000000e+00 848.0
38 TraesCS1A01G376600 chrUn 73.369 2223 514 68 2847 5031 47949888 47952070 0.000000e+00 754.0
39 TraesCS1A01G376600 chrUn 71.903 1114 261 42 2819 3906 96298485 96297398 6.550000e-70 276.0
40 TraesCS1A01G376600 chrUn 70.941 1084 270 35 2862 3925 95985523 95986581 1.450000e-51 215.0
41 TraesCS1A01G376600 chr5A 75.125 2207 468 62 2798 4953 33929416 33931592 0.000000e+00 959.0
42 TraesCS1A01G376600 chr5D 75.398 1695 352 47 2798 4459 43962338 43964000 0.000000e+00 760.0
43 TraesCS1A01G376600 chr3A 73.589 2162 494 69 2802 4929 24012201 24014319 0.000000e+00 758.0
44 TraesCS1A01G376600 chr3A 94.000 200 12 0 5830 6029 633272524 633272325 3.010000e-78 303.0
45 TraesCS1A01G376600 chr3A 93.137 204 14 0 5826 6029 601373399 601373602 3.890000e-77 300.0
46 TraesCS1A01G376600 chr3D 73.168 2184 513 67 2801 4953 13179930 13177789 0.000000e+00 719.0
47 TraesCS1A01G376600 chr3D 94.000 200 12 0 5830 6029 511728155 511728354 3.010000e-78 303.0
48 TraesCS1A01G376600 chr3D 94.000 200 12 0 5830 6029 523192353 523192552 3.010000e-78 303.0
49 TraesCS1A01G376600 chr6B 73.145 1132 258 39 3209 4317 16507805 16508913 1.360000e-96 364.0
50 TraesCS1A01G376600 chr6B 71.197 1111 274 39 2819 3906 47280361 47279274 3.090000e-58 237.0
51 TraesCS1A01G376600 chr6A 70.682 1760 440 65 2819 4540 27106479 27104758 8.300000e-84 322.0
52 TraesCS1A01G376600 chr7B 94.527 201 11 0 5829 6029 462819398 462819198 1.800000e-80 311.0
53 TraesCS1A01G376600 chr7D 78.058 515 95 10 3214 3726 45171971 45171473 6.460000e-80 309.0
54 TraesCS1A01G376600 chr7D 94.030 201 12 0 5829 6029 397205445 397205645 8.360000e-79 305.0
55 TraesCS1A01G376600 chr7D 83.406 229 34 4 3214 3440 590795792 590795566 6.740000e-50 209.0
56 TraesCS1A01G376600 chr7D 75.373 134 28 3 1914 2043 632019314 632019446 7.180000e-05 60.2
57 TraesCS1A01G376600 chr7A 94.089 203 12 0 5827 6029 703525303 703525505 6.460000e-80 309.0
58 TraesCS1A01G376600 chr7A 90.840 131 12 0 6503 6633 595408246 595408116 6.840000e-40 176.0
59 TraesCS1A01G376600 chr4A 85.802 162 20 2 4813 4971 603047697 603047858 1.140000e-37 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G376600 chr1A 550632268 550638900 6632 True 12249.000000 12249 100.000000 1 6633 1 chr1A.!!$R1 6632
1 TraesCS1A01G376600 chr1D 458141288 458147906 6618 True 1178.862500 8013 90.590750 126 6633 8 chr1D.!!$R1 6507
2 TraesCS1A01G376600 chr1B 628615517 628618941 3424 True 1504.166667 4298 92.056333 2109 5255 3 chr1B.!!$R3 3146
3 TraesCS1A01G376600 chr1B 628625331 628626839 1508 True 846.333333 2122 95.660333 268 1856 3 chr1B.!!$R4 1588
4 TraesCS1A01G376600 chr4D 1821950 1825368 3418 False 984.000000 1018 79.163500 1001 4914 2 chr4D.!!$F4 3913
5 TraesCS1A01G376600 chr4B 3483183 3484221 1038 True 989.000000 989 83.908000 1001 2040 1 chr4B.!!$R3 1039
6 TraesCS1A01G376600 chr4B 3513156 3514195 1039 True 974.000000 974 83.621000 1001 2040 1 chr4B.!!$R4 1039
7 TraesCS1A01G376600 chr4B 3732446 3735422 2976 False 911.000000 1013 79.529000 1001 4458 2 chr4B.!!$F1 3457
8 TraesCS1A01G376600 chr4B 3453088 3454107 1019 True 889.000000 889 82.438000 1001 2040 1 chr4B.!!$R2 1039
9 TraesCS1A01G376600 chrUn 48044872 48045924 1052 False 985.000000 985 83.633000 990 2040 1 chrUn.!!$F3 1050
10 TraesCS1A01G376600 chrUn 48075143 48076195 1052 False 979.000000 979 83.538000 990 2040 1 chrUn.!!$F4 1050
11 TraesCS1A01G376600 chrUn 47630216 47633660 3444 False 967.500000 1000 78.908500 987 4914 2 chrUn.!!$F6 3927
12 TraesCS1A01G376600 chrUn 47452166 47454258 2092 False 848.000000 848 74.291000 2825 4914 1 chrUn.!!$F1 2089
13 TraesCS1A01G376600 chrUn 47949888 47952070 2182 False 754.000000 754 73.369000 2847 5031 1 chrUn.!!$F2 2184
14 TraesCS1A01G376600 chrUn 96297398 96298485 1087 True 276.000000 276 71.903000 2819 3906 1 chrUn.!!$R1 1087
15 TraesCS1A01G376600 chrUn 95985523 95986581 1058 False 215.000000 215 70.941000 2862 3925 1 chrUn.!!$F5 1063
16 TraesCS1A01G376600 chr5A 33929416 33931592 2176 False 959.000000 959 75.125000 2798 4953 1 chr5A.!!$F1 2155
17 TraesCS1A01G376600 chr5D 43962338 43964000 1662 False 760.000000 760 75.398000 2798 4459 1 chr5D.!!$F1 1661
18 TraesCS1A01G376600 chr3A 24012201 24014319 2118 False 758.000000 758 73.589000 2802 4929 1 chr3A.!!$F1 2127
19 TraesCS1A01G376600 chr3D 13177789 13179930 2141 True 719.000000 719 73.168000 2801 4953 1 chr3D.!!$R1 2152
20 TraesCS1A01G376600 chr6B 16507805 16508913 1108 False 364.000000 364 73.145000 3209 4317 1 chr6B.!!$F1 1108
21 TraesCS1A01G376600 chr6B 47279274 47280361 1087 True 237.000000 237 71.197000 2819 3906 1 chr6B.!!$R1 1087
22 TraesCS1A01G376600 chr6A 27104758 27106479 1721 True 322.000000 322 70.682000 2819 4540 1 chr6A.!!$R1 1721

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.033503 TGACCTCGCTGGATGTCCTA 60.034 55.000 0.09 0.0 37.11 2.94 F
121 122 1.333177 GACCTCGCTGGATGTCCTAT 58.667 55.000 0.09 0.0 39.71 2.57 F
1174 1195 0.333652 TAGGAGGACCATCACCGACA 59.666 55.000 0.00 0.0 38.94 4.35 F
1565 1589 0.393537 CTTACAAGGGAGGCAGCTGG 60.394 60.000 17.12 0.0 0.00 4.85 F
2214 2243 1.073199 GTCTGTGTGTGGAAGGGGG 59.927 63.158 0.00 0.0 0.00 5.40 F
2306 2335 1.134995 GTTAACCGGTAGAGGGTTCCG 60.135 57.143 8.00 0.0 44.25 4.30 F
4295 4402 1.710339 GCGCTCCGACAATCAAGTC 59.290 57.895 0.00 0.0 35.19 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1104 1125 0.802607 CGAGCTTGACGCCTAGTTCC 60.803 60.000 0.00 0.00 40.39 3.62 R
1662 1686 2.831685 TCTTAGCGAACTTGCCTTCA 57.168 45.000 0.00 0.00 34.65 3.02 R
2721 2757 0.174389 AGCAGTGCACTAGATCACCG 59.826 55.000 21.20 5.56 33.90 4.94 R
3498 3565 3.916184 ACCAAGGAATCACCGGGT 58.084 55.556 6.32 0.00 43.06 5.28 R
4295 4402 2.743664 TGCAAGAATTCATCACCGACAG 59.256 45.455 8.44 0.00 0.00 3.51 R
4423 4536 3.376546 GGCATAGCTTGAACTTTCTCCTG 59.623 47.826 0.00 0.00 0.00 3.86 R
6056 6819 0.027586 GAGCACGCACGTGTTTTTCT 59.972 50.000 22.66 11.73 46.90 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.640771 TGTTTGAGCCTACTCTCCATTT 57.359 40.909 0.00 0.00 43.85 2.32
22 23 4.985538 TGTTTGAGCCTACTCTCCATTTT 58.014 39.130 0.00 0.00 43.85 1.82
23 24 5.385198 TGTTTGAGCCTACTCTCCATTTTT 58.615 37.500 0.00 0.00 43.85 1.94
24 25 5.473504 TGTTTGAGCCTACTCTCCATTTTTC 59.526 40.000 0.00 0.00 43.85 2.29
25 26 5.505181 TTGAGCCTACTCTCCATTTTTCT 57.495 39.130 0.00 0.00 43.85 2.52
26 27 5.091261 TGAGCCTACTCTCCATTTTTCTC 57.909 43.478 0.00 0.00 43.85 2.87
27 28 4.080863 TGAGCCTACTCTCCATTTTTCTCC 60.081 45.833 0.00 0.00 43.85 3.71
28 29 4.107820 AGCCTACTCTCCATTTTTCTCCT 58.892 43.478 0.00 0.00 0.00 3.69
29 30 5.281314 AGCCTACTCTCCATTTTTCTCCTA 58.719 41.667 0.00 0.00 0.00 2.94
30 31 5.365314 AGCCTACTCTCCATTTTTCTCCTAG 59.635 44.000 0.00 0.00 0.00 3.02
31 32 5.364157 GCCTACTCTCCATTTTTCTCCTAGA 59.636 44.000 0.00 0.00 0.00 2.43
32 33 6.042666 GCCTACTCTCCATTTTTCTCCTAGAT 59.957 42.308 0.00 0.00 0.00 1.98
33 34 7.419634 GCCTACTCTCCATTTTTCTCCTAGATT 60.420 40.741 0.00 0.00 0.00 2.40
34 35 8.490311 CCTACTCTCCATTTTTCTCCTAGATTT 58.510 37.037 0.00 0.00 0.00 2.17
35 36 9.323985 CTACTCTCCATTTTTCTCCTAGATTTG 57.676 37.037 0.00 0.00 0.00 2.32
36 37 6.601217 ACTCTCCATTTTTCTCCTAGATTTGC 59.399 38.462 0.00 0.00 0.00 3.68
37 38 5.888161 TCTCCATTTTTCTCCTAGATTTGCC 59.112 40.000 0.00 0.00 0.00 4.52
38 39 5.579047 TCCATTTTTCTCCTAGATTTGCCA 58.421 37.500 0.00 0.00 0.00 4.92
39 40 5.418840 TCCATTTTTCTCCTAGATTTGCCAC 59.581 40.000 0.00 0.00 0.00 5.01
40 41 5.420104 CCATTTTTCTCCTAGATTTGCCACT 59.580 40.000 0.00 0.00 0.00 4.00
41 42 5.964958 TTTTTCTCCTAGATTTGCCACTG 57.035 39.130 0.00 0.00 0.00 3.66
42 43 3.634397 TTCTCCTAGATTTGCCACTGG 57.366 47.619 0.00 0.00 0.00 4.00
56 57 4.994756 CTGGCCGGCAAGGGGTTT 62.995 66.667 30.85 0.00 41.48 3.27
58 59 4.986708 GGCCGGCAAGGGGTTTGA 62.987 66.667 30.85 0.00 39.21 2.69
59 60 2.915137 GCCGGCAAGGGGTTTGAA 60.915 61.111 24.80 0.00 39.21 2.69
60 61 2.282783 GCCGGCAAGGGGTTTGAAT 61.283 57.895 24.80 0.00 39.21 2.57
61 62 0.968393 GCCGGCAAGGGGTTTGAATA 60.968 55.000 24.80 0.00 39.21 1.75
62 63 1.551452 CCGGCAAGGGGTTTGAATAA 58.449 50.000 0.00 0.00 39.21 1.40
63 64 1.896465 CCGGCAAGGGGTTTGAATAAA 59.104 47.619 0.00 0.00 39.21 1.40
64 65 2.499693 CCGGCAAGGGGTTTGAATAAAT 59.500 45.455 0.00 0.00 39.21 1.40
65 66 3.702045 CCGGCAAGGGGTTTGAATAAATA 59.298 43.478 0.00 0.00 39.21 1.40
66 67 4.343814 CCGGCAAGGGGTTTGAATAAATAT 59.656 41.667 0.00 0.00 39.21 1.28
67 68 5.288804 CGGCAAGGGGTTTGAATAAATATG 58.711 41.667 0.00 0.00 39.21 1.78
68 69 5.610398 GGCAAGGGGTTTGAATAAATATGG 58.390 41.667 0.00 0.00 39.21 2.74
69 70 5.130311 GGCAAGGGGTTTGAATAAATATGGT 59.870 40.000 0.00 0.00 39.21 3.55
70 71 6.325286 GGCAAGGGGTTTGAATAAATATGGTA 59.675 38.462 0.00 0.00 39.21 3.25
71 72 7.147637 GGCAAGGGGTTTGAATAAATATGGTAA 60.148 37.037 0.00 0.00 39.21 2.85
72 73 8.261522 GCAAGGGGTTTGAATAAATATGGTAAA 58.738 33.333 0.00 0.00 39.21 2.01
81 82 8.996988 TGAATAAATATGGTAAAATTCGTCGC 57.003 30.769 0.00 0.00 0.00 5.19
82 83 8.613482 TGAATAAATATGGTAAAATTCGTCGCA 58.387 29.630 0.00 0.00 0.00 5.10
83 84 8.776680 AATAAATATGGTAAAATTCGTCGCAC 57.223 30.769 0.00 0.00 0.00 5.34
84 85 2.798834 ATGGTAAAATTCGTCGCACG 57.201 45.000 2.79 2.79 44.19 5.34
85 86 1.500108 TGGTAAAATTCGTCGCACGT 58.500 45.000 8.22 0.00 43.14 4.49
86 87 1.192757 TGGTAAAATTCGTCGCACGTG 59.807 47.619 12.28 12.28 43.14 4.49
87 88 1.192980 GGTAAAATTCGTCGCACGTGT 59.807 47.619 18.38 0.00 43.14 4.49
88 89 2.348779 GGTAAAATTCGTCGCACGTGTT 60.349 45.455 18.38 2.39 43.14 3.32
89 90 2.461897 AAAATTCGTCGCACGTGTTT 57.538 40.000 18.38 4.81 43.14 2.83
90 91 1.737249 AAATTCGTCGCACGTGTTTG 58.263 45.000 18.38 7.81 43.14 2.93
91 92 0.041663 AATTCGTCGCACGTGTTTGG 60.042 50.000 18.38 4.99 43.14 3.28
92 93 2.438385 ATTCGTCGCACGTGTTTGGC 62.438 55.000 18.38 8.21 43.14 4.52
93 94 3.931130 CGTCGCACGTGTTTGGCA 61.931 61.111 18.38 0.00 36.74 4.92
94 95 2.405594 GTCGCACGTGTTTGGCAA 59.594 55.556 18.38 0.00 0.00 4.52
95 96 1.226435 GTCGCACGTGTTTGGCAAA 60.226 52.632 18.38 8.93 0.00 3.68
96 97 1.226435 TCGCACGTGTTTGGCAAAC 60.226 52.632 30.99 30.99 41.73 2.93
108 109 2.791383 TGGCAAACAAAATGACCTCG 57.209 45.000 0.00 0.00 0.00 4.63
109 110 1.269517 TGGCAAACAAAATGACCTCGC 60.270 47.619 0.00 0.00 0.00 5.03
110 111 1.000274 GGCAAACAAAATGACCTCGCT 60.000 47.619 0.00 0.00 0.00 4.93
111 112 2.053627 GCAAACAAAATGACCTCGCTG 58.946 47.619 0.00 0.00 0.00 5.18
112 113 2.664916 CAAACAAAATGACCTCGCTGG 58.335 47.619 0.00 0.00 42.93 4.85
113 114 2.270352 AACAAAATGACCTCGCTGGA 57.730 45.000 1.32 0.00 39.71 3.86
114 115 2.496899 ACAAAATGACCTCGCTGGAT 57.503 45.000 1.32 0.00 39.71 3.41
115 116 2.086869 ACAAAATGACCTCGCTGGATG 58.913 47.619 1.32 0.00 39.71 3.51
116 117 2.086869 CAAAATGACCTCGCTGGATGT 58.913 47.619 1.32 0.00 39.71 3.06
117 118 2.029838 AAATGACCTCGCTGGATGTC 57.970 50.000 1.32 0.00 38.04 3.06
118 119 0.179000 AATGACCTCGCTGGATGTCC 59.821 55.000 1.32 0.00 37.11 4.02
119 120 0.689080 ATGACCTCGCTGGATGTCCT 60.689 55.000 0.09 0.00 37.11 3.85
120 121 0.033503 TGACCTCGCTGGATGTCCTA 60.034 55.000 0.09 0.00 37.11 2.94
121 122 1.333177 GACCTCGCTGGATGTCCTAT 58.667 55.000 0.09 0.00 39.71 2.57
122 123 1.689273 GACCTCGCTGGATGTCCTATT 59.311 52.381 0.09 0.00 39.71 1.73
123 124 1.414181 ACCTCGCTGGATGTCCTATTG 59.586 52.381 0.09 0.00 39.71 1.90
124 125 1.414181 CCTCGCTGGATGTCCTATTGT 59.586 52.381 0.09 0.00 38.35 2.71
125 126 2.546795 CCTCGCTGGATGTCCTATTGTC 60.547 54.545 0.09 0.00 38.35 3.18
126 127 2.363680 CTCGCTGGATGTCCTATTGTCT 59.636 50.000 0.09 0.00 36.82 3.41
127 128 2.766263 TCGCTGGATGTCCTATTGTCTT 59.234 45.455 0.09 0.00 36.82 3.01
128 129 2.868583 CGCTGGATGTCCTATTGTCTTG 59.131 50.000 0.09 0.00 36.82 3.02
129 130 3.679917 CGCTGGATGTCCTATTGTCTTGT 60.680 47.826 0.09 0.00 36.82 3.16
130 131 3.873952 GCTGGATGTCCTATTGTCTTGTC 59.126 47.826 0.09 0.00 36.82 3.18
131 132 4.383552 GCTGGATGTCCTATTGTCTTGTCT 60.384 45.833 0.09 0.00 36.82 3.41
135 136 6.173339 GGATGTCCTATTGTCTTGTCTTCAA 58.827 40.000 0.00 0.00 0.00 2.69
150 151 7.768582 TCTTGTCTTCAATACAGTCACTTGAAA 59.231 33.333 7.09 0.00 38.15 2.69
187 188 3.490761 GCTCTCTCGATTCAGGAAGGAAG 60.491 52.174 0.00 0.00 0.00 3.46
210 211 3.252701 CAGCCATGATGTAATGAAGAGGC 59.747 47.826 0.00 0.00 39.82 4.70
251 252 9.778993 CACTAGTTTTGTATTCAATCAATCTGG 57.221 33.333 0.00 0.00 33.32 3.86
253 254 6.633856 AGTTTTGTATTCAATCAATCTGGCC 58.366 36.000 0.00 0.00 33.32 5.36
254 255 5.596836 TTTGTATTCAATCAATCTGGCCC 57.403 39.130 0.00 0.00 33.32 5.80
255 256 4.524802 TGTATTCAATCAATCTGGCCCT 57.475 40.909 0.00 0.00 0.00 5.19
319 337 5.221422 ACAGACTCACTTCCTTCAGAGAAAG 60.221 44.000 0.00 0.00 32.59 2.62
350 368 4.454161 TGATACCATGTCGAACCAAACAAG 59.546 41.667 0.00 0.00 0.00 3.16
395 413 2.080286 TACAGACGCAAGAAGGAAGC 57.920 50.000 0.00 0.00 43.62 3.86
624 642 1.541310 CGGGTAGTTGGTCTGGAGCA 61.541 60.000 0.00 0.00 36.99 4.26
666 684 9.226345 GATTCAAGGTAATTAATTTCAGCTTCG 57.774 33.333 5.91 6.16 0.00 3.79
689 707 5.071955 CTAGATAACGCTAGCTTTGTTGC 57.928 43.478 16.17 8.19 32.26 4.17
716 734 8.973619 GCTTCGTAGCTATTTTTAGTGTAATG 57.026 34.615 6.80 0.00 44.27 1.90
748 766 6.093633 GTGCCCTCTGTTTTATTTCGAGTAAT 59.906 38.462 0.00 0.00 0.00 1.89
774 793 3.879892 TGTGATGTTCATTCGTGGTTCAA 59.120 39.130 0.00 0.00 0.00 2.69
798 817 6.683090 TTTTGTTTTCACGTATAGCAATGC 57.317 33.333 0.00 0.00 0.00 3.56
867 886 1.873591 GAGTGAATCCACAGCACGTTT 59.126 47.619 0.00 0.00 45.54 3.60
1174 1195 0.333652 TAGGAGGACCATCACCGACA 59.666 55.000 0.00 0.00 38.94 4.35
1565 1589 0.393537 CTTACAAGGGAGGCAGCTGG 60.394 60.000 17.12 0.00 0.00 4.85
1566 1590 1.133809 TTACAAGGGAGGCAGCTGGT 61.134 55.000 17.12 4.49 0.00 4.00
1567 1591 1.841302 TACAAGGGAGGCAGCTGGTG 61.841 60.000 17.12 1.76 0.00 4.17
1662 1686 5.552870 AGGTATTCAATGACGAGGCTATT 57.447 39.130 0.00 0.00 0.00 1.73
2046 2073 5.971763 CTCAAGAAGCAGGTCAGTACTTAT 58.028 41.667 0.00 0.00 0.00 1.73
2047 2074 6.360370 TCAAGAAGCAGGTCAGTACTTATT 57.640 37.500 0.00 0.00 0.00 1.40
2056 2083 6.459848 GCAGGTCAGTACTTATTCATACTCGT 60.460 42.308 0.00 0.00 28.91 4.18
2081 2108 4.898328 AACACTCGTATTTTAGCGTCAC 57.102 40.909 0.00 0.00 0.00 3.67
2082 2109 3.904571 ACACTCGTATTTTAGCGTCACA 58.095 40.909 0.00 0.00 0.00 3.58
2083 2110 3.671928 ACACTCGTATTTTAGCGTCACAC 59.328 43.478 0.00 0.00 0.00 3.82
2214 2243 1.073199 GTCTGTGTGTGGAAGGGGG 59.927 63.158 0.00 0.00 0.00 5.40
2306 2335 1.134995 GTTAACCGGTAGAGGGTTCCG 60.135 57.143 8.00 0.00 44.25 4.30
2390 2419 8.306761 GTTGTTATTTCTTCCCATCTTGTTCAT 58.693 33.333 0.00 0.00 0.00 2.57
2400 2429 7.630242 TCCCATCTTGTTCATCTCAATTAAC 57.370 36.000 0.00 0.00 0.00 2.01
2490 2520 2.094182 ACTTAATGCTCGTGATCACCGT 60.094 45.455 20.03 4.94 0.00 4.83
2568 2601 6.173339 ACGAGTTCACCAAGATGATAAATGT 58.827 36.000 0.00 0.00 0.00 2.71
2665 2698 4.000325 TGAAGTTGATTCCACACGTATGG 59.000 43.478 6.50 6.50 41.57 2.74
2792 2830 6.207417 ACCTAGTCATTGCCAACATATTATGC 59.793 38.462 3.52 0.00 0.00 3.14
3038 3093 6.239064 CGAATACCAGAGGAGCTAAACTATGT 60.239 42.308 6.47 1.85 0.00 2.29
3498 3565 3.507162 TCTGGGAACTTCAAGATGCAA 57.493 42.857 0.00 0.00 0.00 4.08
3813 3905 5.048573 GGGTTTCCGTGCTCTAACAAATTTA 60.049 40.000 0.00 0.00 0.00 1.40
4295 4402 1.710339 GCGCTCCGACAATCAAGTC 59.290 57.895 0.00 0.00 35.19 3.01
4423 4536 3.493303 GGGAGGAGTGGGGATGGC 61.493 72.222 0.00 0.00 0.00 4.40
4497 4610 3.564225 GCAAGTTGGGTTATATTCCTCCG 59.436 47.826 4.75 0.00 0.00 4.63
4504 4617 3.393609 GGGTTATATTCCTCCGGGTCTTT 59.606 47.826 0.00 0.00 0.00 2.52
4566 4679 2.433838 CAGTGCCTCCAGTCGCTG 60.434 66.667 0.52 0.52 34.97 5.18
4827 4940 2.713967 CGCTTCCATGGCTTTGGGG 61.714 63.158 6.96 0.00 37.37 4.96
4944 5057 5.395682 ACTCAAGTAAACCGTACAGCATA 57.604 39.130 0.00 0.00 0.00 3.14
4971 5084 6.203530 AGACAAACATCGATATGCAGGTAATG 59.796 38.462 0.00 0.00 36.50 1.90
4997 5113 5.009010 ACATTGTTGATCGTTGCTCTTTTCT 59.991 36.000 0.00 0.00 0.00 2.52
5067 5189 6.749139 TCCATTCCATTCTAGTAGTTCATCG 58.251 40.000 0.00 0.00 0.00 3.84
5130 5342 4.329545 TTGCCAGGAGTGGTCGCC 62.330 66.667 0.00 0.00 46.96 5.54
5184 5396 2.985139 CAACGGAGAAGGAACGAGTTAC 59.015 50.000 0.00 0.00 0.00 2.50
5269 5577 4.481112 GCCATCGCCGTTGCCAAG 62.481 66.667 0.00 0.00 0.00 3.61
5288 5596 0.687354 GGCCAGAACAGGTGAGAAGA 59.313 55.000 0.00 0.00 0.00 2.87
5404 6038 4.072088 GAGGAACAACACGCCGCG 62.072 66.667 12.14 12.14 0.00 6.46
5428 6062 2.422591 GCCAAAGCCAAAGCAGCA 59.577 55.556 0.00 0.00 43.56 4.41
5543 6222 1.367840 GAGGAGGAGCACAACGTGT 59.632 57.895 0.00 0.00 35.75 4.49
5547 6226 1.583054 GAGGAGCACAACGTGTCTTT 58.417 50.000 0.00 0.00 35.75 2.52
5551 6230 1.663643 GAGCACAACGTGTCTTTCACA 59.336 47.619 0.00 0.00 46.44 3.58
5552 6231 1.665679 AGCACAACGTGTCTTTCACAG 59.334 47.619 0.00 0.00 46.44 3.66
5618 6306 1.849097 CCGACCGGTGTATAAAGAGC 58.151 55.000 14.63 0.00 0.00 4.09
5647 6335 4.010667 TCGTTAGCCAGTTAAACCATGT 57.989 40.909 0.00 0.00 0.00 3.21
5648 6336 5.149973 TCGTTAGCCAGTTAAACCATGTA 57.850 39.130 0.00 0.00 0.00 2.29
5678 6367 6.828785 AGATGTCGATAAGCAATTTTTACCCT 59.171 34.615 0.00 0.00 0.00 4.34
5681 6370 6.027749 GTCGATAAGCAATTTTTACCCTGTG 58.972 40.000 0.00 0.00 0.00 3.66
5685 6374 7.148306 CGATAAGCAATTTTTACCCTGTGTAGT 60.148 37.037 0.00 0.00 0.00 2.73
5686 6375 6.724893 AAGCAATTTTTACCCTGTGTAGTT 57.275 33.333 0.00 0.00 0.00 2.24
5696 6385 4.711399 ACCCTGTGTAGTTTAGTTCAACC 58.289 43.478 0.00 0.00 0.00 3.77
5703 6392 8.827177 TGTGTAGTTTAGTTCAACCATCTAAG 57.173 34.615 0.00 0.00 0.00 2.18
5705 6394 8.709646 GTGTAGTTTAGTTCAACCATCTAAGTG 58.290 37.037 0.00 0.00 0.00 3.16
5713 6402 2.736721 CAACCATCTAAGTGTCGTGTGG 59.263 50.000 0.00 0.00 0.00 4.17
5714 6403 1.337823 ACCATCTAAGTGTCGTGTGGC 60.338 52.381 0.00 0.00 0.00 5.01
5715 6404 1.066858 CCATCTAAGTGTCGTGTGGCT 60.067 52.381 0.00 0.00 0.00 4.75
5717 6406 0.317160 TCTAAGTGTCGTGTGGCTGG 59.683 55.000 0.00 0.00 0.00 4.85
5730 6419 0.455410 TGGCTGGCATTTTATCGTGC 59.545 50.000 0.00 0.00 40.55 5.34
5735 6424 3.429085 CTGGCATTTTATCGTGCAAGTC 58.571 45.455 0.00 0.00 43.00 3.01
5736 6425 2.163412 TGGCATTTTATCGTGCAAGTCC 59.837 45.455 0.00 0.00 43.00 3.85
5743 6432 1.742761 ATCGTGCAAGTCCCATCTTG 58.257 50.000 0.00 2.58 45.09 3.02
5748 6437 3.679917 CGTGCAAGTCCCATCTTGTCTAT 60.680 47.826 7.98 0.00 44.41 1.98
5749 6438 4.441495 CGTGCAAGTCCCATCTTGTCTATA 60.441 45.833 7.98 0.00 44.41 1.31
5751 6440 4.469586 TGCAAGTCCCATCTTGTCTATACA 59.530 41.667 7.98 0.00 44.41 2.29
5752 6441 5.130975 TGCAAGTCCCATCTTGTCTATACAT 59.869 40.000 7.98 0.00 44.41 2.29
5753 6442 5.468072 GCAAGTCCCATCTTGTCTATACATG 59.532 44.000 7.98 0.00 44.41 3.21
5754 6443 6.686378 GCAAGTCCCATCTTGTCTATACATGA 60.686 42.308 0.00 0.23 44.41 3.07
5755 6444 7.275183 CAAGTCCCATCTTGTCTATACATGAA 58.725 38.462 0.00 0.00 41.52 2.57
5756 6445 7.060383 AGTCCCATCTTGTCTATACATGAAG 57.940 40.000 0.00 0.00 41.52 3.02
5758 6447 6.703607 GTCCCATCTTGTCTATACATGAAGTG 59.296 42.308 0.00 0.00 41.52 3.16
5759 6448 5.468072 CCCATCTTGTCTATACATGAAGTGC 59.532 44.000 0.00 0.00 41.52 4.40
5760 6449 5.176406 CCATCTTGTCTATACATGAAGTGCG 59.824 44.000 0.00 0.00 41.52 5.34
5761 6450 5.324784 TCTTGTCTATACATGAAGTGCGT 57.675 39.130 0.00 0.00 36.98 5.24
5762 6451 5.102313 TCTTGTCTATACATGAAGTGCGTG 58.898 41.667 0.00 0.00 36.98 5.34
5770 6533 4.468095 ACATGAAGTGCGTGTAGTTTTC 57.532 40.909 0.00 0.00 44.72 2.29
5810 6573 4.884247 TGCTGATTTGCAATGATGTCAAA 58.116 34.783 0.00 0.00 40.29 2.69
5812 6575 5.350091 TGCTGATTTGCAATGATGTCAAATG 59.650 36.000 0.00 0.00 40.29 2.32
5813 6576 5.350365 GCTGATTTGCAATGATGTCAAATGT 59.650 36.000 0.00 0.00 40.29 2.71
5818 6581 7.731882 TTTGCAATGATGTCAAATGTCAAAT 57.268 28.000 0.00 0.00 31.90 2.32
5819 6582 7.731882 TTGCAATGATGTCAAATGTCAAATT 57.268 28.000 0.00 0.00 0.00 1.82
5820 6583 7.123160 TGCAATGATGTCAAATGTCAAATTG 57.877 32.000 11.45 11.45 31.35 2.32
5821 6584 6.706716 TGCAATGATGTCAAATGTCAAATTGT 59.293 30.769 14.52 0.00 31.11 2.71
5822 6585 7.226918 TGCAATGATGTCAAATGTCAAATTGTT 59.773 29.630 14.52 0.00 31.11 2.83
5823 6586 7.532546 GCAATGATGTCAAATGTCAAATTGTTG 59.467 33.333 14.52 0.00 35.95 3.33
5824 6587 8.552865 CAATGATGTCAAATGTCAAATTGTTGT 58.447 29.630 0.00 0.00 36.07 3.32
5825 6588 7.466193 TGATGTCAAATGTCAAATTGTTGTG 57.534 32.000 0.00 0.00 36.07 3.33
5826 6589 7.263496 TGATGTCAAATGTCAAATTGTTGTGA 58.737 30.769 0.00 0.00 36.07 3.58
5827 6590 7.927092 TGATGTCAAATGTCAAATTGTTGTGAT 59.073 29.630 0.00 0.00 36.07 3.06
5828 6591 7.466193 TGTCAAATGTCAAATTGTTGTGATG 57.534 32.000 0.00 0.00 36.07 3.07
5830 6593 8.193438 TGTCAAATGTCAAATTGTTGTGATGTA 58.807 29.630 0.00 0.00 36.07 2.29
5831 6594 8.479280 GTCAAATGTCAAATTGTTGTGATGTAC 58.521 33.333 0.00 0.00 36.07 2.90
5833 6596 8.693504 CAAATGTCAAATTGTTGTGATGTACTC 58.306 33.333 0.00 0.00 36.07 2.59
5834 6597 6.312399 TGTCAAATTGTTGTGATGTACTCC 57.688 37.500 0.00 0.00 36.07 3.85
5835 6598 5.240623 TGTCAAATTGTTGTGATGTACTCCC 59.759 40.000 0.00 0.00 36.07 4.30
5836 6599 5.473504 GTCAAATTGTTGTGATGTACTCCCT 59.526 40.000 0.00 0.00 36.07 4.20
5837 6600 5.705441 TCAAATTGTTGTGATGTACTCCCTC 59.295 40.000 0.00 0.00 36.07 4.30
5838 6601 3.695830 TTGTTGTGATGTACTCCCTCC 57.304 47.619 0.00 0.00 0.00 4.30
5839 6602 2.615391 TGTTGTGATGTACTCCCTCCA 58.385 47.619 0.00 0.00 0.00 3.86
5840 6603 3.181329 TGTTGTGATGTACTCCCTCCAT 58.819 45.455 0.00 0.00 0.00 3.41
5841 6604 3.587061 TGTTGTGATGTACTCCCTCCATT 59.413 43.478 0.00 0.00 0.00 3.16
5842 6605 4.042809 TGTTGTGATGTACTCCCTCCATTT 59.957 41.667 0.00 0.00 0.00 2.32
5843 6606 4.487714 TGTGATGTACTCCCTCCATTTC 57.512 45.455 0.00 0.00 0.00 2.17
5844 6607 3.843619 TGTGATGTACTCCCTCCATTTCA 59.156 43.478 0.00 0.00 0.00 2.69
5845 6608 4.288366 TGTGATGTACTCCCTCCATTTCAA 59.712 41.667 0.00 0.00 0.00 2.69
5846 6609 5.222027 TGTGATGTACTCCCTCCATTTCAAA 60.222 40.000 0.00 0.00 0.00 2.69
5847 6610 5.710099 GTGATGTACTCCCTCCATTTCAAAA 59.290 40.000 0.00 0.00 0.00 2.44
5848 6611 6.378280 GTGATGTACTCCCTCCATTTCAAAAT 59.622 38.462 0.00 0.00 0.00 1.82
5849 6612 7.556275 GTGATGTACTCCCTCCATTTCAAAATA 59.444 37.037 0.00 0.00 0.00 1.40
5850 6613 8.281531 TGATGTACTCCCTCCATTTCAAAATAT 58.718 33.333 0.00 0.00 0.00 1.28
5851 6614 9.793259 GATGTACTCCCTCCATTTCAAAATATA 57.207 33.333 0.00 0.00 0.00 0.86
5852 6615 9.799106 ATGTACTCCCTCCATTTCAAAATATAG 57.201 33.333 0.00 0.00 0.00 1.31
5853 6616 8.778059 TGTACTCCCTCCATTTCAAAATATAGT 58.222 33.333 0.00 0.00 0.00 2.12
5854 6617 9.057089 GTACTCCCTCCATTTCAAAATATAGTG 57.943 37.037 0.00 0.00 0.00 2.74
5855 6618 7.643123 ACTCCCTCCATTTCAAAATATAGTGT 58.357 34.615 0.00 0.00 0.00 3.55
5856 6619 7.557719 ACTCCCTCCATTTCAAAATATAGTGTG 59.442 37.037 0.00 0.00 0.00 3.82
5857 6620 6.833416 TCCCTCCATTTCAAAATATAGTGTGG 59.167 38.462 0.00 0.00 0.00 4.17
5858 6621 6.461509 CCCTCCATTTCAAAATATAGTGTGGC 60.462 42.308 0.00 0.00 0.00 5.01
5859 6622 6.461509 CCTCCATTTCAAAATATAGTGTGGCC 60.462 42.308 0.00 0.00 0.00 5.36
5860 6623 5.067153 TCCATTTCAAAATATAGTGTGGCCG 59.933 40.000 0.00 0.00 0.00 6.13
5861 6624 4.364415 TTTCAAAATATAGTGTGGCCGC 57.636 40.909 10.11 10.11 0.00 6.53
5862 6625 1.937223 TCAAAATATAGTGTGGCCGCG 59.063 47.619 12.58 0.00 0.00 6.46
5863 6626 0.661020 AAAATATAGTGTGGCCGCGC 59.339 50.000 22.37 22.37 0.00 6.86
5864 6627 0.179056 AAATATAGTGTGGCCGCGCT 60.179 50.000 33.09 33.09 0.00 5.92
5865 6628 0.179056 AATATAGTGTGGCCGCGCTT 60.179 50.000 35.32 23.92 0.00 4.68
5866 6629 0.179056 ATATAGTGTGGCCGCGCTTT 60.179 50.000 35.32 28.84 0.00 3.51
5867 6630 0.808453 TATAGTGTGGCCGCGCTTTC 60.808 55.000 35.32 11.77 0.00 2.62
5871 6634 4.404654 GTGGCCGCGCTTTCCAAG 62.405 66.667 5.56 0.00 0.00 3.61
5872 6635 4.634703 TGGCCGCGCTTTCCAAGA 62.635 61.111 5.56 0.00 0.00 3.02
5873 6636 3.134127 GGCCGCGCTTTCCAAGAT 61.134 61.111 5.56 0.00 0.00 2.40
5874 6637 2.700773 GGCCGCGCTTTCCAAGATT 61.701 57.895 5.56 0.00 0.00 2.40
5875 6638 1.373590 GGCCGCGCTTTCCAAGATTA 61.374 55.000 5.56 0.00 0.00 1.75
5876 6639 0.450184 GCCGCGCTTTCCAAGATTAA 59.550 50.000 5.56 0.00 0.00 1.40
5877 6640 1.135517 GCCGCGCTTTCCAAGATTAAA 60.136 47.619 5.56 0.00 0.00 1.52
5878 6641 2.515912 CCGCGCTTTCCAAGATTAAAC 58.484 47.619 5.56 0.00 0.00 2.01
5879 6642 2.161609 CCGCGCTTTCCAAGATTAAACT 59.838 45.455 5.56 0.00 0.00 2.66
5880 6643 3.365969 CCGCGCTTTCCAAGATTAAACTT 60.366 43.478 5.56 0.00 0.00 2.66
5881 6644 4.226761 CGCGCTTTCCAAGATTAAACTTT 58.773 39.130 5.56 0.00 0.00 2.66
5882 6645 4.088496 CGCGCTTTCCAAGATTAAACTTTG 59.912 41.667 5.56 0.00 0.00 2.77
5883 6646 5.219633 GCGCTTTCCAAGATTAAACTTTGA 58.780 37.500 0.00 0.00 0.00 2.69
5884 6647 5.117135 GCGCTTTCCAAGATTAAACTTTGAC 59.883 40.000 0.00 0.00 0.00 3.18
5885 6648 5.629435 CGCTTTCCAAGATTAAACTTTGACC 59.371 40.000 0.00 0.00 0.00 4.02
5886 6649 6.512297 GCTTTCCAAGATTAAACTTTGACCA 58.488 36.000 0.00 0.00 0.00 4.02
5887 6650 7.154656 GCTTTCCAAGATTAAACTTTGACCAT 58.845 34.615 0.00 0.00 0.00 3.55
5888 6651 8.303876 GCTTTCCAAGATTAAACTTTGACCATA 58.696 33.333 0.00 0.00 0.00 2.74
5901 6664 8.496872 AACTTTGACCATAAATTTAACGAACG 57.503 30.769 1.21 0.00 0.00 3.95
5902 6665 7.863666 ACTTTGACCATAAATTTAACGAACGA 58.136 30.769 1.21 0.00 0.00 3.85
5903 6666 8.013378 ACTTTGACCATAAATTTAACGAACGAG 58.987 33.333 1.21 0.01 0.00 4.18
5904 6667 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
5905 6668 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
5906 6669 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
5907 6670 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
5908 6671 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
5909 6672 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
5910 6673 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
5911 6674 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
5912 6675 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
5913 6676 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
5914 6677 2.559840 GAACGAGACCGACTGCGA 59.440 61.111 0.00 0.00 40.82 5.10
5915 6678 1.136984 GAACGAGACCGACTGCGAT 59.863 57.895 0.00 0.00 40.82 4.58
5916 6679 1.134530 GAACGAGACCGACTGCGATG 61.135 60.000 0.00 0.00 40.82 3.84
5917 6680 1.583495 AACGAGACCGACTGCGATGA 61.583 55.000 0.00 0.00 40.82 2.92
5918 6681 1.297967 CGAGACCGACTGCGATGAG 60.298 63.158 0.00 0.00 40.82 2.90
5919 6682 1.706287 CGAGACCGACTGCGATGAGA 61.706 60.000 0.00 0.00 40.82 3.27
5920 6683 0.028770 GAGACCGACTGCGATGAGAG 59.971 60.000 0.00 0.00 40.82 3.20
5921 6684 0.393132 AGACCGACTGCGATGAGAGA 60.393 55.000 0.00 0.00 40.82 3.10
5922 6685 0.452184 GACCGACTGCGATGAGAGAA 59.548 55.000 0.00 0.00 40.82 2.87
5923 6686 0.888619 ACCGACTGCGATGAGAGAAA 59.111 50.000 0.00 0.00 40.82 2.52
5924 6687 1.272490 ACCGACTGCGATGAGAGAAAA 59.728 47.619 0.00 0.00 40.82 2.29
5925 6688 2.288825 ACCGACTGCGATGAGAGAAAAA 60.289 45.455 0.00 0.00 40.82 1.94
5926 6689 2.346847 CCGACTGCGATGAGAGAAAAAG 59.653 50.000 0.00 0.00 40.82 2.27
5927 6690 2.989840 CGACTGCGATGAGAGAAAAAGT 59.010 45.455 0.00 0.00 40.82 2.66
5928 6691 3.430218 CGACTGCGATGAGAGAAAAAGTT 59.570 43.478 0.00 0.00 40.82 2.66
5929 6692 4.621460 CGACTGCGATGAGAGAAAAAGTTA 59.379 41.667 0.00 0.00 40.82 2.24
5930 6693 5.443431 CGACTGCGATGAGAGAAAAAGTTAC 60.443 44.000 0.00 0.00 40.82 2.50
5931 6694 5.297547 ACTGCGATGAGAGAAAAAGTTACA 58.702 37.500 0.00 0.00 0.00 2.41
5932 6695 5.934625 ACTGCGATGAGAGAAAAAGTTACAT 59.065 36.000 0.00 0.00 0.00 2.29
5933 6696 7.097192 ACTGCGATGAGAGAAAAAGTTACATA 58.903 34.615 0.00 0.00 0.00 2.29
5934 6697 7.602644 ACTGCGATGAGAGAAAAAGTTACATAA 59.397 33.333 0.00 0.00 0.00 1.90
5935 6698 8.492673 TGCGATGAGAGAAAAAGTTACATAAT 57.507 30.769 0.00 0.00 0.00 1.28
5936 6699 8.946085 TGCGATGAGAGAAAAAGTTACATAATT 58.054 29.630 0.00 0.00 0.00 1.40
5981 6744 9.651718 CGAATTCACTAATATAACTTTTGCTCC 57.348 33.333 6.22 0.00 0.00 4.70
5982 6745 9.952188 GAATTCACTAATATAACTTTTGCTCCC 57.048 33.333 0.00 0.00 0.00 4.30
5983 6746 7.548196 TTCACTAATATAACTTTTGCTCCCG 57.452 36.000 0.00 0.00 0.00 5.14
5984 6747 5.526111 TCACTAATATAACTTTTGCTCCCGC 59.474 40.000 0.00 0.00 0.00 6.13
5985 6748 4.820173 ACTAATATAACTTTTGCTCCCGCC 59.180 41.667 0.00 0.00 34.43 6.13
5986 6749 1.658994 TATAACTTTTGCTCCCGCCG 58.341 50.000 0.00 0.00 34.43 6.46
5987 6750 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
5988 6751 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
5989 6752 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
5990 6753 2.988684 TTTTGCTCCCGCCGCAAT 60.989 55.556 5.33 0.00 45.67 3.56
5991 6754 2.872337 CTTTTGCTCCCGCCGCAATC 62.872 60.000 5.33 0.00 45.67 2.67
6003 6766 2.827604 CGCAATCGGTCTTGACAGT 58.172 52.632 3.08 0.00 0.00 3.55
6004 6767 1.148310 CGCAATCGGTCTTGACAGTT 58.852 50.000 3.08 0.00 0.00 3.16
6005 6768 2.333926 CGCAATCGGTCTTGACAGTTA 58.666 47.619 3.08 0.00 0.00 2.24
6006 6769 2.734606 CGCAATCGGTCTTGACAGTTAA 59.265 45.455 3.08 0.00 0.00 2.01
6007 6770 3.185594 CGCAATCGGTCTTGACAGTTAAA 59.814 43.478 3.08 0.00 0.00 1.52
6008 6771 4.142902 CGCAATCGGTCTTGACAGTTAAAT 60.143 41.667 3.08 0.00 0.00 1.40
6009 6772 5.616866 CGCAATCGGTCTTGACAGTTAAATT 60.617 40.000 3.08 0.00 0.00 1.82
6010 6773 6.149633 GCAATCGGTCTTGACAGTTAAATTT 58.850 36.000 3.08 0.00 0.00 1.82
6011 6774 7.302524 GCAATCGGTCTTGACAGTTAAATTTA 58.697 34.615 3.08 0.00 0.00 1.40
6012 6775 7.270579 GCAATCGGTCTTGACAGTTAAATTTAC 59.729 37.037 0.00 0.00 0.00 2.01
6013 6776 6.456447 TCGGTCTTGACAGTTAAATTTACG 57.544 37.500 0.00 0.00 0.00 3.18
6014 6777 5.406175 TCGGTCTTGACAGTTAAATTTACGG 59.594 40.000 0.00 0.00 0.00 4.02
6015 6778 5.178067 CGGTCTTGACAGTTAAATTTACGGT 59.822 40.000 0.00 0.99 0.00 4.83
6016 6779 6.596703 GGTCTTGACAGTTAAATTTACGGTC 58.403 40.000 16.40 16.40 39.93 4.79
6017 6780 6.203338 GGTCTTGACAGTTAAATTTACGGTCA 59.797 38.462 19.34 19.34 44.84 4.02
6021 6784 7.556733 TGACAGTTAAATTTACGGTCAAAGT 57.443 32.000 20.17 1.98 44.02 2.66
6022 6785 7.987649 TGACAGTTAAATTTACGGTCAAAGTT 58.012 30.769 20.17 0.00 44.02 2.66
6023 6786 7.911205 TGACAGTTAAATTTACGGTCAAAGTTG 59.089 33.333 20.17 5.22 44.02 3.16
6024 6787 7.987649 ACAGTTAAATTTACGGTCAAAGTTGA 58.012 30.769 0.00 0.00 34.20 3.18
6025 6788 8.460428 ACAGTTAAATTTACGGTCAAAGTTGAA 58.540 29.630 0.00 0.00 39.21 2.69
6026 6789 8.953990 CAGTTAAATTTACGGTCAAAGTTGAAG 58.046 33.333 0.00 0.00 39.21 3.02
6027 6790 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
6032 6795 3.472652 ACGGTCAAAGTTGAAGCATGTA 58.527 40.909 0.00 0.00 39.21 2.29
6036 6799 5.393962 GGTCAAAGTTGAAGCATGTATCAC 58.606 41.667 0.00 0.00 39.21 3.06
6049 6812 8.491331 AAGCATGTATCACTTTGTTTTGTTTT 57.509 26.923 0.00 0.00 0.00 2.43
6069 6832 8.330302 TGTTTTAAGATAAGAAAAACACGTGC 57.670 30.769 17.22 0.00 44.08 5.34
6070 6833 7.164498 TGTTTTAAGATAAGAAAAACACGTGCG 59.836 33.333 17.22 0.00 44.08 5.34
6071 6834 4.806342 AAGATAAGAAAAACACGTGCGT 57.194 36.364 17.22 0.00 0.00 5.24
6109 6872 2.342279 CCACGGAGAAGCCACGAA 59.658 61.111 0.00 0.00 35.94 3.85
6110 6873 2.027625 CCACGGAGAAGCCACGAAC 61.028 63.158 0.00 0.00 35.94 3.95
6112 6875 0.670546 CACGGAGAAGCCACGAACAT 60.671 55.000 0.00 0.00 35.94 2.71
6130 6896 0.178975 ATCGCTGGGTAGGAGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
6136 6902 0.251430 GGGTAGGAGAGAGGGATCCG 60.251 65.000 5.45 0.00 40.73 4.18
6139 6905 0.397187 TAGGAGAGAGGGATCCGTCG 59.603 60.000 24.85 0.00 40.73 5.12
6154 6920 3.618774 GTCGATGTACAGGGACGAC 57.381 57.895 21.77 21.77 44.19 4.34
6155 6921 0.247974 GTCGATGTACAGGGACGACG 60.248 60.000 21.77 0.00 42.30 5.12
6156 6922 0.391528 TCGATGTACAGGGACGACGA 60.392 55.000 0.00 1.54 0.00 4.20
6209 6975 4.115199 CCGAAGGCCCCAGGGAAG 62.115 72.222 7.25 0.00 46.14 3.46
6210 6976 3.330720 CGAAGGCCCCAGGGAAGT 61.331 66.667 7.25 0.00 37.50 3.01
6211 6977 2.356667 GAAGGCCCCAGGGAAGTG 59.643 66.667 7.25 0.00 37.50 3.16
6212 6978 2.121506 AAGGCCCCAGGGAAGTGA 60.122 61.111 7.25 0.00 37.50 3.41
6213 6979 2.203549 GAAGGCCCCAGGGAAGTGAG 62.204 65.000 7.25 0.00 37.50 3.51
6214 6980 3.732849 GGCCCCAGGGAAGTGAGG 61.733 72.222 7.25 0.00 37.50 3.86
6215 6981 2.936032 GCCCCAGGGAAGTGAGGT 60.936 66.667 7.25 0.00 37.50 3.85
6216 6982 2.539081 GCCCCAGGGAAGTGAGGTT 61.539 63.158 7.25 0.00 37.50 3.50
6217 6983 1.685820 CCCCAGGGAAGTGAGGTTC 59.314 63.158 7.25 0.00 37.50 3.62
6218 6984 1.296715 CCCAGGGAAGTGAGGTTCG 59.703 63.158 0.00 0.00 0.00 3.95
6219 6985 1.481056 CCCAGGGAAGTGAGGTTCGT 61.481 60.000 0.00 0.00 0.00 3.85
6220 6986 0.037232 CCAGGGAAGTGAGGTTCGTC 60.037 60.000 0.00 0.00 0.00 4.20
6221 6987 0.037232 CAGGGAAGTGAGGTTCGTCC 60.037 60.000 0.00 0.00 33.82 4.79
6222 6988 1.080025 GGGAAGTGAGGTTCGTCCG 60.080 63.158 0.00 0.00 41.99 4.79
6240 7006 4.592192 CCGATCGCCAGTCGCCAT 62.592 66.667 10.32 0.00 37.75 4.40
6241 7007 3.032609 CGATCGCCAGTCGCCATC 61.033 66.667 0.26 0.00 38.27 3.51
6242 7008 2.663188 GATCGCCAGTCGCCATCC 60.663 66.667 0.00 0.00 38.27 3.51
6243 7009 3.445518 GATCGCCAGTCGCCATCCA 62.446 63.158 0.00 0.00 38.27 3.41
6244 7010 2.721971 GATCGCCAGTCGCCATCCAT 62.722 60.000 0.00 0.00 38.27 3.41
6297 7063 2.821366 CACGCCATGTGCTCCTCC 60.821 66.667 4.92 0.00 42.70 4.30
6298 7064 4.457496 ACGCCATGTGCTCCTCCG 62.457 66.667 4.92 0.00 38.05 4.63
6302 7068 2.584418 CATGTGCTCCTCCGCGAG 60.584 66.667 8.23 2.69 0.00 5.03
6320 7086 3.474570 CCGCCTTCCCTCCCTCTG 61.475 72.222 0.00 0.00 0.00 3.35
6321 7087 2.364317 CGCCTTCCCTCCCTCTGA 60.364 66.667 0.00 0.00 0.00 3.27
6334 7100 0.248661 CCTCTGATCTACACGCACGG 60.249 60.000 0.00 0.00 0.00 4.94
6347 7113 4.261888 CACGGGTGCACTGTACTC 57.738 61.111 17.98 0.00 36.76 2.59
6376 7142 1.208358 CGTGTTGACTACGGCTCGA 59.792 57.895 1.50 0.00 37.86 4.04
6428 7196 0.811281 CGCCCATTTCTTCTCCCAAC 59.189 55.000 0.00 0.00 0.00 3.77
6429 7197 1.614317 CGCCCATTTCTTCTCCCAACT 60.614 52.381 0.00 0.00 0.00 3.16
6481 7267 2.955246 AGCCCAGGAGGAGGAGGA 60.955 66.667 0.00 0.00 38.24 3.71
6482 7268 2.766229 GCCCAGGAGGAGGAGGAC 60.766 72.222 0.00 0.00 38.24 3.85
6483 7269 3.114390 CCCAGGAGGAGGAGGACT 58.886 66.667 0.00 0.00 38.24 3.85
6484 7270 1.382420 CCCAGGAGGAGGAGGACTG 60.382 68.421 0.00 0.00 38.24 3.51
6485 7271 1.382420 CCAGGAGGAGGAGGACTGG 60.382 68.421 0.00 0.00 42.28 4.00
6486 7272 1.700368 CAGGAGGAGGAGGACTGGA 59.300 63.158 0.00 0.00 0.00 3.86
6487 7273 0.396974 CAGGAGGAGGAGGACTGGAG 60.397 65.000 0.00 0.00 0.00 3.86
6557 7393 4.151883 TGCTTGCTCCCAAAATTTCTAGT 58.848 39.130 0.00 0.00 0.00 2.57
6568 7404 3.508952 AATTTCTAGTCCTGGGGAGGA 57.491 47.619 0.00 0.00 35.23 3.71
6577 7413 3.092511 TGGGGAGGATGCTCTGCC 61.093 66.667 14.40 7.55 43.46 4.85
6582 7418 2.691623 AGGATGCTCTGCCCTGCT 60.692 61.111 0.00 0.00 0.00 4.24
6583 7419 2.268167 GAGGATGCTCTGCCCTGCTT 62.268 60.000 7.03 0.00 0.00 3.91
6585 7421 1.382692 GGATGCTCTGCCCTGCTTTC 61.383 60.000 0.00 0.00 0.00 2.62
6586 7422 0.394080 GATGCTCTGCCCTGCTTTCT 60.394 55.000 0.00 0.00 0.00 2.52
6587 7423 0.680280 ATGCTCTGCCCTGCTTTCTG 60.680 55.000 0.00 0.00 0.00 3.02
6588 7424 1.002868 GCTCTGCCCTGCTTTCTGA 60.003 57.895 0.00 0.00 0.00 3.27
6589 7425 0.607489 GCTCTGCCCTGCTTTCTGAA 60.607 55.000 0.00 0.00 0.00 3.02
6591 7427 1.002888 CTCTGCCCTGCTTTCTGAAGA 59.997 52.381 0.00 0.00 34.71 2.87
6594 7430 2.163815 CTGCCCTGCTTTCTGAAGATTG 59.836 50.000 0.00 0.00 34.71 2.67
6595 7431 2.165998 GCCCTGCTTTCTGAAGATTGT 58.834 47.619 0.00 0.00 34.71 2.71
6596 7432 3.244875 TGCCCTGCTTTCTGAAGATTGTA 60.245 43.478 0.00 0.00 34.71 2.41
6597 7433 3.950395 GCCCTGCTTTCTGAAGATTGTAT 59.050 43.478 0.00 0.00 34.71 2.29
6598 7434 4.201990 GCCCTGCTTTCTGAAGATTGTATG 60.202 45.833 0.00 0.00 34.71 2.39
6599 7435 4.946157 CCCTGCTTTCTGAAGATTGTATGT 59.054 41.667 0.00 0.00 34.71 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.640771 AAATGGAGAGTAGGCTCAAACA 57.359 40.909 0.00 0.00 44.00 2.83
1 2 5.707764 AGAAAAATGGAGAGTAGGCTCAAAC 59.292 40.000 0.00 0.00 44.00 2.93
6 7 4.107820 AGGAGAAAAATGGAGAGTAGGCT 58.892 43.478 0.00 0.00 0.00 4.58
7 8 4.495690 AGGAGAAAAATGGAGAGTAGGC 57.504 45.455 0.00 0.00 0.00 3.93
8 9 7.610580 ATCTAGGAGAAAAATGGAGAGTAGG 57.389 40.000 0.00 0.00 0.00 3.18
9 10 9.323985 CAAATCTAGGAGAAAAATGGAGAGTAG 57.676 37.037 0.00 0.00 0.00 2.57
10 11 7.770897 GCAAATCTAGGAGAAAAATGGAGAGTA 59.229 37.037 0.00 0.00 0.00 2.59
11 12 6.601217 GCAAATCTAGGAGAAAAATGGAGAGT 59.399 38.462 0.00 0.00 0.00 3.24
12 13 6.039159 GGCAAATCTAGGAGAAAAATGGAGAG 59.961 42.308 0.00 0.00 0.00 3.20
13 14 5.888161 GGCAAATCTAGGAGAAAAATGGAGA 59.112 40.000 0.00 0.00 0.00 3.71
14 15 5.653769 TGGCAAATCTAGGAGAAAAATGGAG 59.346 40.000 0.00 0.00 0.00 3.86
15 16 5.418840 GTGGCAAATCTAGGAGAAAAATGGA 59.581 40.000 0.00 0.00 0.00 3.41
16 17 5.420104 AGTGGCAAATCTAGGAGAAAAATGG 59.580 40.000 0.00 0.00 0.00 3.16
17 18 6.327934 CAGTGGCAAATCTAGGAGAAAAATG 58.672 40.000 0.00 0.00 0.00 2.32
18 19 5.420104 CCAGTGGCAAATCTAGGAGAAAAAT 59.580 40.000 0.00 0.00 0.00 1.82
19 20 4.766891 CCAGTGGCAAATCTAGGAGAAAAA 59.233 41.667 0.00 0.00 0.00 1.94
20 21 4.335416 CCAGTGGCAAATCTAGGAGAAAA 58.665 43.478 0.00 0.00 0.00 2.29
21 22 3.955471 CCAGTGGCAAATCTAGGAGAAA 58.045 45.455 0.00 0.00 0.00 2.52
22 23 3.634397 CCAGTGGCAAATCTAGGAGAA 57.366 47.619 0.00 0.00 0.00 2.87
39 40 4.994756 AAACCCCTTGCCGGCCAG 62.995 66.667 26.77 23.34 0.00 4.85
41 42 4.986708 TCAAACCCCTTGCCGGCC 62.987 66.667 26.77 6.44 34.76 6.13
42 43 0.968393 TATTCAAACCCCTTGCCGGC 60.968 55.000 22.73 22.73 34.76 6.13
43 44 1.551452 TTATTCAAACCCCTTGCCGG 58.449 50.000 0.00 0.00 34.76 6.13
44 45 3.885724 ATTTATTCAAACCCCTTGCCG 57.114 42.857 0.00 0.00 34.76 5.69
45 46 5.130311 ACCATATTTATTCAAACCCCTTGCC 59.870 40.000 0.00 0.00 34.76 4.52
46 47 6.233905 ACCATATTTATTCAAACCCCTTGC 57.766 37.500 0.00 0.00 34.76 4.01
55 56 9.440784 GCGACGAATTTTACCATATTTATTCAA 57.559 29.630 0.00 0.00 0.00 2.69
56 57 8.613482 TGCGACGAATTTTACCATATTTATTCA 58.387 29.630 0.00 0.00 0.00 2.57
57 58 8.889000 GTGCGACGAATTTTACCATATTTATTC 58.111 33.333 0.00 0.00 0.00 1.75
58 59 7.584847 CGTGCGACGAATTTTACCATATTTATT 59.415 33.333 0.00 0.00 46.05 1.40
59 60 7.067116 CGTGCGACGAATTTTACCATATTTAT 58.933 34.615 0.00 0.00 46.05 1.40
60 61 6.035866 ACGTGCGACGAATTTTACCATATTTA 59.964 34.615 14.18 0.00 46.05 1.40
61 62 5.163834 ACGTGCGACGAATTTTACCATATTT 60.164 36.000 14.18 0.00 46.05 1.40
62 63 4.330620 ACGTGCGACGAATTTTACCATATT 59.669 37.500 14.18 0.00 46.05 1.28
63 64 3.866910 ACGTGCGACGAATTTTACCATAT 59.133 39.130 14.18 0.00 46.05 1.78
64 65 3.061028 CACGTGCGACGAATTTTACCATA 59.939 43.478 0.82 0.00 46.05 2.74
65 66 2.070783 ACGTGCGACGAATTTTACCAT 58.929 42.857 14.18 0.00 46.05 3.55
66 67 1.192757 CACGTGCGACGAATTTTACCA 59.807 47.619 0.82 0.00 46.05 3.25
67 68 1.192980 ACACGTGCGACGAATTTTACC 59.807 47.619 17.22 0.00 46.05 2.85
68 69 2.565367 ACACGTGCGACGAATTTTAC 57.435 45.000 17.22 0.00 46.05 2.01
69 70 3.281601 CAAACACGTGCGACGAATTTTA 58.718 40.909 17.22 0.00 46.05 1.52
70 71 2.105659 CAAACACGTGCGACGAATTTT 58.894 42.857 17.22 2.90 46.05 1.82
71 72 1.595976 CCAAACACGTGCGACGAATTT 60.596 47.619 17.22 3.70 46.05 1.82
72 73 0.041663 CCAAACACGTGCGACGAATT 60.042 50.000 17.22 0.00 46.05 2.17
73 74 1.567537 CCAAACACGTGCGACGAAT 59.432 52.632 17.22 0.00 46.05 3.34
74 75 3.007516 CCAAACACGTGCGACGAA 58.992 55.556 17.22 0.00 46.05 3.85
75 76 3.632107 GCCAAACACGTGCGACGA 61.632 61.111 17.22 0.00 46.05 4.20
77 78 1.226435 TTTGCCAAACACGTGCGAC 60.226 52.632 17.22 1.36 0.00 5.19
78 79 1.226435 GTTTGCCAAACACGTGCGA 60.226 52.632 17.22 0.00 41.04 5.10
79 80 1.515088 TGTTTGCCAAACACGTGCG 60.515 52.632 18.60 4.18 45.79 5.34
80 81 4.485554 TGTTTGCCAAACACGTGC 57.514 50.000 18.60 0.77 45.79 5.34
86 87 3.245048 CGAGGTCATTTTGTTTGCCAAAC 59.755 43.478 13.35 13.35 42.63 2.93
87 88 3.452474 CGAGGTCATTTTGTTTGCCAAA 58.548 40.909 0.00 0.00 41.25 3.28
88 89 2.801342 GCGAGGTCATTTTGTTTGCCAA 60.801 45.455 0.00 0.00 0.00 4.52
89 90 1.269517 GCGAGGTCATTTTGTTTGCCA 60.270 47.619 0.00 0.00 0.00 4.92
90 91 1.000274 AGCGAGGTCATTTTGTTTGCC 60.000 47.619 0.00 0.00 0.00 4.52
91 92 2.053627 CAGCGAGGTCATTTTGTTTGC 58.946 47.619 0.00 0.00 0.00 3.68
92 93 2.293122 TCCAGCGAGGTCATTTTGTTTG 59.707 45.455 0.00 0.00 39.02 2.93
93 94 2.582052 TCCAGCGAGGTCATTTTGTTT 58.418 42.857 0.00 0.00 39.02 2.83
94 95 2.270352 TCCAGCGAGGTCATTTTGTT 57.730 45.000 0.00 0.00 39.02 2.83
95 96 2.086869 CATCCAGCGAGGTCATTTTGT 58.913 47.619 0.00 0.00 39.02 2.83
96 97 2.086869 ACATCCAGCGAGGTCATTTTG 58.913 47.619 0.00 0.00 39.02 2.44
97 98 2.359900 GACATCCAGCGAGGTCATTTT 58.640 47.619 2.14 0.00 46.65 1.82
98 99 2.029838 GACATCCAGCGAGGTCATTT 57.970 50.000 2.14 0.00 46.65 2.32
99 100 3.768633 GACATCCAGCGAGGTCATT 57.231 52.632 2.14 0.00 46.65 2.57
102 103 1.333177 ATAGGACATCCAGCGAGGTC 58.667 55.000 0.00 0.00 46.68 3.85
103 104 1.414181 CAATAGGACATCCAGCGAGGT 59.586 52.381 0.00 0.00 38.89 3.85
104 105 1.414181 ACAATAGGACATCCAGCGAGG 59.586 52.381 0.00 0.00 38.89 4.63
105 106 2.363680 AGACAATAGGACATCCAGCGAG 59.636 50.000 0.00 0.00 38.89 5.03
106 107 2.388735 AGACAATAGGACATCCAGCGA 58.611 47.619 0.00 0.00 38.89 4.93
107 108 2.868583 CAAGACAATAGGACATCCAGCG 59.131 50.000 0.00 0.00 38.89 5.18
108 109 3.873952 GACAAGACAATAGGACATCCAGC 59.126 47.826 0.00 0.00 38.89 4.85
109 110 5.350504 AGACAAGACAATAGGACATCCAG 57.649 43.478 0.00 0.00 38.89 3.86
110 111 5.248248 TGAAGACAAGACAATAGGACATCCA 59.752 40.000 0.00 0.00 38.89 3.41
111 112 5.734720 TGAAGACAAGACAATAGGACATCC 58.265 41.667 0.00 0.00 0.00 3.51
112 113 7.856145 ATTGAAGACAAGACAATAGGACATC 57.144 36.000 0.00 0.00 39.46 3.06
113 114 8.723942 GTATTGAAGACAAGACAATAGGACAT 57.276 34.615 0.00 0.00 44.47 3.06
123 124 6.701841 TCAAGTGACTGTATTGAAGACAAGAC 59.298 38.462 0.00 0.00 45.06 3.01
124 125 6.816136 TCAAGTGACTGTATTGAAGACAAGA 58.184 36.000 0.00 0.00 39.46 3.02
125 126 7.482654 TTCAAGTGACTGTATTGAAGACAAG 57.517 36.000 9.80 0.00 37.86 3.16
126 127 7.857734 TTTCAAGTGACTGTATTGAAGACAA 57.142 32.000 12.26 0.00 42.19 3.18
127 128 8.450578 AATTTCAAGTGACTGTATTGAAGACA 57.549 30.769 12.26 0.00 42.19 3.41
130 131 9.831737 CCTAAATTTCAAGTGACTGTATTGAAG 57.168 33.333 12.26 4.60 42.19 3.02
131 132 8.296713 GCCTAAATTTCAAGTGACTGTATTGAA 58.703 33.333 0.00 9.80 40.25 2.69
135 136 6.127897 GCTGCCTAAATTTCAAGTGACTGTAT 60.128 38.462 0.00 0.00 0.00 2.29
187 188 3.252701 CCTCTTCATTACATCATGGCTGC 59.747 47.826 0.00 0.00 0.00 5.25
210 211 5.862924 AACTAGTGATTGGACAATTGTCG 57.137 39.130 27.69 15.30 45.65 4.35
251 252 5.412904 GTGCATATTTTCTCCATACTAGGGC 59.587 44.000 0.00 0.00 0.00 5.19
253 254 6.533730 TGGTGCATATTTTCTCCATACTAGG 58.466 40.000 0.00 0.00 0.00 3.02
254 255 7.220030 ACTGGTGCATATTTTCTCCATACTAG 58.780 38.462 0.00 0.00 0.00 2.57
255 256 7.136822 ACTGGTGCATATTTTCTCCATACTA 57.863 36.000 0.00 0.00 0.00 1.82
319 337 6.084277 GGTTCGACATGGTATCAAACTTTTC 58.916 40.000 0.00 0.00 0.00 2.29
350 368 9.722056 AATTTCGTTCTTAATTAGATGATGTGC 57.278 29.630 0.00 0.00 31.54 4.57
496 514 4.532834 TGGCTGGGTATGTATTCCTTTTC 58.467 43.478 0.00 0.00 0.00 2.29
624 642 3.643237 TGAATCGATAGGGGAGTTCAGT 58.357 45.455 0.00 0.00 0.00 3.41
748 766 4.071423 ACCACGAATGAACATCACAATGA 58.929 39.130 0.00 0.00 36.67 2.57
758 777 6.582437 AACAAAATTGAACCACGAATGAAC 57.418 33.333 0.00 0.00 0.00 3.18
774 793 6.310224 GGCATTGCTATACGTGAAAACAAAAT 59.690 34.615 8.82 0.00 0.00 1.82
932 951 7.274250 GCATGCAAGTAAAATTACTCCTCTTTG 59.726 37.037 14.21 2.10 42.86 2.77
1104 1125 0.802607 CGAGCTTGACGCCTAGTTCC 60.803 60.000 0.00 0.00 40.39 3.62
1174 1195 3.953775 CCACCCCCGCACACTCTT 61.954 66.667 0.00 0.00 0.00 2.85
1662 1686 2.831685 TCTTAGCGAACTTGCCTTCA 57.168 45.000 0.00 0.00 34.65 3.02
1834 1858 7.984050 CCACATGTCATCTAGTACAAGAAAGAT 59.016 37.037 0.00 0.00 0.00 2.40
1884 1908 5.059833 CCATAGCTAAAGGGAGTCATCAAC 58.940 45.833 0.00 0.00 0.00 3.18
2056 2083 7.754475 TGTGACGCTAAAATACGAGTGTTATAA 59.246 33.333 0.00 0.00 36.56 0.98
2065 2092 3.904571 ACAGTGTGACGCTAAAATACGA 58.095 40.909 0.00 0.00 0.00 3.43
2184 2213 1.122019 ACACAGACACACCCCTCCTC 61.122 60.000 0.00 0.00 0.00 3.71
2185 2214 1.074471 ACACAGACACACCCCTCCT 60.074 57.895 0.00 0.00 0.00 3.69
2214 2243 7.451731 TGAATGGATGTTATATATCCCCTCC 57.548 40.000 11.85 0.00 42.79 4.30
2361 2390 8.193953 ACAAGATGGGAAGAAATAACAACAAT 57.806 30.769 0.00 0.00 0.00 2.71
2362 2391 7.595819 ACAAGATGGGAAGAAATAACAACAA 57.404 32.000 0.00 0.00 0.00 2.83
2400 2429 9.775854 ATTGATGATCTTTGTAGAGGAATACAG 57.224 33.333 0.00 0.00 37.01 2.74
2460 2490 8.892723 TGATCACGAGCATTAAGTCAATAAAAT 58.107 29.630 0.00 0.00 0.00 1.82
2473 2503 0.802222 CGACGGTGATCACGAGCATT 60.802 55.000 19.33 1.03 34.93 3.56
2665 2698 6.801862 GCATTACGATAAATTAGATTGCCACC 59.198 38.462 0.00 0.00 0.00 4.61
2721 2757 0.174389 AGCAGTGCACTAGATCACCG 59.826 55.000 21.20 5.56 33.90 4.94
2773 2811 4.039004 GGGTGCATAATATGTTGGCAATGA 59.961 41.667 1.92 0.00 36.08 2.57
3498 3565 3.916184 ACCAAGGAATCACCGGGT 58.084 55.556 6.32 0.00 43.06 5.28
4295 4402 2.743664 TGCAAGAATTCATCACCGACAG 59.256 45.455 8.44 0.00 0.00 3.51
4423 4536 3.376546 GGCATAGCTTGAACTTTCTCCTG 59.623 47.826 0.00 0.00 0.00 3.86
4827 4940 2.358737 CACTCGGGGCCACACTTC 60.359 66.667 5.46 0.00 0.00 3.01
4944 5057 4.141846 ACCTGCATATCGATGTTTGTCTCT 60.142 41.667 8.54 0.00 35.30 3.10
4971 5084 2.095567 AGAGCAACGATCAACAATGTGC 60.096 45.455 0.00 0.00 0.00 4.57
4974 5087 5.455392 AGAAAAGAGCAACGATCAACAATG 58.545 37.500 0.00 0.00 0.00 2.82
5036 5158 8.503428 ACTACTAGAATGGAATGGAAGATGAT 57.497 34.615 0.00 0.00 0.00 2.45
5067 5189 9.988815 ATTGTATATATTAGGCACTAGCATAGC 57.011 33.333 0.00 0.00 44.39 2.97
5094 5306 3.934579 GCAAGCAAAATGAAATGGTAGGG 59.065 43.478 0.00 0.00 0.00 3.53
5148 5360 0.517316 CGTTGCTTCGGCTTTAGCTT 59.483 50.000 0.00 0.00 42.37 3.74
5269 5577 0.687354 TCTTCTCACCTGTTCTGGCC 59.313 55.000 0.00 0.00 0.00 5.36
5358 5992 2.769617 CTTTAGCACGTGTCGCGG 59.230 61.111 18.38 1.60 46.52 6.46
5359 5993 3.348967 GGCTTTAGCACGTGTCGCG 62.349 63.158 18.38 0.00 44.36 5.87
5360 5994 2.474712 GGCTTTAGCACGTGTCGC 59.525 61.111 18.38 11.98 44.36 5.19
5361 5995 1.279527 TTCGGCTTTAGCACGTGTCG 61.280 55.000 18.38 2.82 44.36 4.35
5362 5996 0.438830 CTTCGGCTTTAGCACGTGTC 59.561 55.000 18.38 9.62 44.36 3.67
5363 5997 1.566018 GCTTCGGCTTTAGCACGTGT 61.566 55.000 18.38 6.65 44.36 4.49
5364 5998 1.132640 GCTTCGGCTTTAGCACGTG 59.867 57.895 12.28 12.28 44.36 4.49
5365 5999 1.291877 CTGCTTCGGCTTTAGCACGT 61.292 55.000 3.88 0.00 42.12 4.49
5421 6055 0.892814 GTGCTCCTCCTTTGCTGCTT 60.893 55.000 0.00 0.00 0.00 3.91
5428 6062 1.448540 CGCATCGTGCTCCTCCTTT 60.449 57.895 8.07 0.00 42.25 3.11
5505 6139 1.878775 GCTGCTTTGGCTTCGACAT 59.121 52.632 0.00 0.00 39.59 3.06
5543 6222 0.944311 GCTTCGGCGTCTGTGAAAGA 60.944 55.000 6.85 0.00 0.00 2.52
5558 6237 3.591254 AAGGTGTCGGCTCCGCTTC 62.591 63.158 1.88 0.00 39.59 3.86
5564 6243 0.670854 GTCCTTGAAGGTGTCGGCTC 60.671 60.000 11.60 0.00 36.53 4.70
5595 6274 2.904470 TTTATACACCGGTCGGCGGC 62.904 60.000 2.59 4.32 39.32 6.53
5596 6275 0.872881 CTTTATACACCGGTCGGCGG 60.873 60.000 2.59 0.00 39.32 6.13
5606 6294 2.892784 AGGCGAGGCTCTTTATACAC 57.107 50.000 13.50 0.00 0.00 2.90
5610 6298 0.824759 ACGAAGGCGAGGCTCTTTAT 59.175 50.000 13.50 0.00 41.64 1.40
5670 6358 7.282901 GGTTGAACTAAACTACACAGGGTAAAA 59.717 37.037 0.00 0.00 0.00 1.52
5672 6360 6.126825 TGGTTGAACTAAACTACACAGGGTAA 60.127 38.462 0.00 0.00 0.00 2.85
5673 6361 5.366186 TGGTTGAACTAAACTACACAGGGTA 59.634 40.000 0.00 0.00 0.00 3.69
5674 6362 4.164604 TGGTTGAACTAAACTACACAGGGT 59.835 41.667 0.00 0.00 0.00 4.34
5678 6367 8.426489 ACTTAGATGGTTGAACTAAACTACACA 58.574 33.333 0.00 0.00 0.00 3.72
5681 6370 8.828688 ACACTTAGATGGTTGAACTAAACTAC 57.171 34.615 0.00 0.00 0.00 2.73
5685 6374 6.422701 CACGACACTTAGATGGTTGAACTAAA 59.577 38.462 0.00 0.00 0.00 1.85
5686 6375 5.924254 CACGACACTTAGATGGTTGAACTAA 59.076 40.000 0.00 0.00 0.00 2.24
5696 6385 1.995484 CAGCCACACGACACTTAGATG 59.005 52.381 0.00 0.00 0.00 2.90
5703 6392 1.795170 AAATGCCAGCCACACGACAC 61.795 55.000 0.00 0.00 0.00 3.67
5705 6394 0.878416 TAAAATGCCAGCCACACGAC 59.122 50.000 0.00 0.00 0.00 4.34
5713 6402 2.187707 CTTGCACGATAAAATGCCAGC 58.812 47.619 0.00 0.00 41.33 4.85
5714 6403 3.429085 GACTTGCACGATAAAATGCCAG 58.571 45.455 0.00 0.00 41.33 4.85
5715 6404 2.163412 GGACTTGCACGATAAAATGCCA 59.837 45.455 0.00 0.00 41.33 4.92
5717 6406 2.163412 TGGGACTTGCACGATAAAATGC 59.837 45.455 0.00 0.00 42.40 3.56
5735 6424 5.468072 GCACTTCATGTATAGACAAGATGGG 59.532 44.000 11.67 9.22 39.59 4.00
5736 6425 5.176406 CGCACTTCATGTATAGACAAGATGG 59.824 44.000 11.67 4.79 39.59 3.51
5743 6432 5.579718 ACTACACGCACTTCATGTATAGAC 58.420 41.667 0.00 0.00 0.00 2.59
5748 6437 5.051153 TGAAAACTACACGCACTTCATGTA 58.949 37.500 0.00 0.00 0.00 2.29
5749 6438 3.874543 TGAAAACTACACGCACTTCATGT 59.125 39.130 0.00 0.00 0.00 3.21
5751 6440 4.127171 ACTGAAAACTACACGCACTTCAT 58.873 39.130 0.00 0.00 0.00 2.57
5752 6441 3.527533 ACTGAAAACTACACGCACTTCA 58.472 40.909 0.00 0.00 0.00 3.02
5753 6442 4.270325 AGAACTGAAAACTACACGCACTTC 59.730 41.667 0.00 0.00 0.00 3.01
5754 6443 4.189231 AGAACTGAAAACTACACGCACTT 58.811 39.130 0.00 0.00 0.00 3.16
5755 6444 3.793559 AGAACTGAAAACTACACGCACT 58.206 40.909 0.00 0.00 0.00 4.40
5756 6445 5.646467 TTAGAACTGAAAACTACACGCAC 57.354 39.130 0.00 0.00 0.00 5.34
5758 6447 7.853929 TCAAATTTAGAACTGAAAACTACACGC 59.146 33.333 0.00 0.00 0.00 5.34
5759 6448 9.710979 TTCAAATTTAGAACTGAAAACTACACG 57.289 29.630 0.00 0.00 0.00 4.49
5792 6555 6.954616 TGACATTTGACATCATTGCAAATC 57.045 33.333 1.71 0.00 37.42 2.17
5807 6570 8.578308 AGTACATCACAACAATTTGACATTTG 57.422 30.769 2.79 0.00 36.48 2.32
5810 6573 6.071952 GGGAGTACATCACAACAATTTGACAT 60.072 38.462 2.79 0.00 36.48 3.06
5812 6575 5.473504 AGGGAGTACATCACAACAATTTGAC 59.526 40.000 2.79 0.00 36.48 3.18
5813 6576 5.630121 AGGGAGTACATCACAACAATTTGA 58.370 37.500 2.79 0.00 36.48 2.69
5818 6581 2.976185 TGGAGGGAGTACATCACAACAA 59.024 45.455 0.00 0.00 31.63 2.83
5819 6582 2.615391 TGGAGGGAGTACATCACAACA 58.385 47.619 0.00 0.00 31.63 3.33
5820 6583 3.914426 ATGGAGGGAGTACATCACAAC 57.086 47.619 0.00 0.00 31.63 3.32
5821 6584 4.288366 TGAAATGGAGGGAGTACATCACAA 59.712 41.667 0.00 0.00 31.63 3.33
5822 6585 3.843619 TGAAATGGAGGGAGTACATCACA 59.156 43.478 0.00 0.00 31.63 3.58
5823 6586 4.487714 TGAAATGGAGGGAGTACATCAC 57.512 45.455 0.00 0.00 0.00 3.06
5824 6587 5.512942 TTTGAAATGGAGGGAGTACATCA 57.487 39.130 0.00 0.00 0.00 3.07
5825 6588 8.697507 ATATTTTGAAATGGAGGGAGTACATC 57.302 34.615 0.00 0.00 0.00 3.06
5826 6589 9.799106 CTATATTTTGAAATGGAGGGAGTACAT 57.201 33.333 0.00 0.00 0.00 2.29
5827 6590 8.778059 ACTATATTTTGAAATGGAGGGAGTACA 58.222 33.333 0.00 0.00 0.00 2.90
5828 6591 9.057089 CACTATATTTTGAAATGGAGGGAGTAC 57.943 37.037 0.00 0.00 0.00 2.73
5830 6593 7.557719 CACACTATATTTTGAAATGGAGGGAGT 59.442 37.037 8.02 0.00 0.00 3.85
5831 6594 7.013655 CCACACTATATTTTGAAATGGAGGGAG 59.986 40.741 8.02 2.47 0.00 4.30
5833 6596 6.461509 GCCACACTATATTTTGAAATGGAGGG 60.462 42.308 0.00 0.97 0.00 4.30
5834 6597 6.461509 GGCCACACTATATTTTGAAATGGAGG 60.462 42.308 0.00 0.00 0.00 4.30
5835 6598 6.507023 GGCCACACTATATTTTGAAATGGAG 58.493 40.000 0.00 0.06 0.00 3.86
5836 6599 5.067153 CGGCCACACTATATTTTGAAATGGA 59.933 40.000 2.24 0.00 0.00 3.41
5837 6600 5.280945 CGGCCACACTATATTTTGAAATGG 58.719 41.667 2.24 0.00 0.00 3.16
5838 6601 4.739716 GCGGCCACACTATATTTTGAAATG 59.260 41.667 2.24 0.00 0.00 2.32
5839 6602 4.497340 CGCGGCCACACTATATTTTGAAAT 60.497 41.667 2.24 0.00 0.00 2.17
5840 6603 3.181505 CGCGGCCACACTATATTTTGAAA 60.182 43.478 2.24 0.00 0.00 2.69
5841 6604 2.353269 CGCGGCCACACTATATTTTGAA 59.647 45.455 2.24 0.00 0.00 2.69
5842 6605 1.937223 CGCGGCCACACTATATTTTGA 59.063 47.619 2.24 0.00 0.00 2.69
5843 6606 1.596954 GCGCGGCCACACTATATTTTG 60.597 52.381 8.83 0.00 0.00 2.44
5844 6607 0.661020 GCGCGGCCACACTATATTTT 59.339 50.000 8.83 0.00 0.00 1.82
5845 6608 0.179056 AGCGCGGCCACACTATATTT 60.179 50.000 8.83 0.00 0.00 1.40
5846 6609 0.179056 AAGCGCGGCCACACTATATT 60.179 50.000 8.83 0.00 0.00 1.28
5847 6610 0.179056 AAAGCGCGGCCACACTATAT 60.179 50.000 8.83 0.00 0.00 0.86
5848 6611 0.808453 GAAAGCGCGGCCACACTATA 60.808 55.000 8.83 0.00 0.00 1.31
5849 6612 2.046314 AAAGCGCGGCCACACTAT 60.046 55.556 8.83 0.00 0.00 2.12
5850 6613 2.740826 GAAAGCGCGGCCACACTA 60.741 61.111 8.83 0.00 0.00 2.74
5854 6617 4.404654 CTTGGAAAGCGCGGCCAC 62.405 66.667 16.58 0.00 36.98 5.01
5855 6618 3.918253 ATCTTGGAAAGCGCGGCCA 62.918 57.895 8.83 13.63 45.70 5.36
5856 6619 1.373590 TAATCTTGGAAAGCGCGGCC 61.374 55.000 8.83 5.42 45.70 6.13
5857 6620 0.450184 TTAATCTTGGAAAGCGCGGC 59.550 50.000 8.83 0.00 45.70 6.53
5858 6621 2.161609 AGTTTAATCTTGGAAAGCGCGG 59.838 45.455 8.83 0.00 45.70 6.46
5859 6622 3.471495 AGTTTAATCTTGGAAAGCGCG 57.529 42.857 0.00 0.00 45.70 6.86
5860 6623 5.117135 GTCAAAGTTTAATCTTGGAAAGCGC 59.883 40.000 0.00 0.00 45.70 5.92
5861 6624 5.629435 GGTCAAAGTTTAATCTTGGAAAGCG 59.371 40.000 5.15 0.00 45.70 4.68
5862 6625 6.512297 TGGTCAAAGTTTAATCTTGGAAAGC 58.488 36.000 5.15 0.00 45.70 3.51
5875 6638 8.960075 CGTTCGTTAAATTTATGGTCAAAGTTT 58.040 29.630 0.00 0.00 29.44 2.66
5876 6639 8.344098 TCGTTCGTTAAATTTATGGTCAAAGTT 58.656 29.630 0.00 0.00 31.36 2.66
5877 6640 7.863666 TCGTTCGTTAAATTTATGGTCAAAGT 58.136 30.769 0.00 0.00 0.00 2.66
5878 6641 8.225107 TCTCGTTCGTTAAATTTATGGTCAAAG 58.775 33.333 0.00 0.00 0.00 2.77
5879 6642 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
5880 6643 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
5881 6644 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
5882 6645 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
5883 6646 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
5884 6647 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
5885 6648 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
5886 6649 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
5887 6650 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
5888 6651 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
5889 6652 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
5890 6653 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
5891 6654 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
5892 6655 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
5893 6656 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
5894 6657 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
5895 6658 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
5896 6659 2.579241 ATCGCAGTCGGTCTCGTTCG 62.579 60.000 0.00 0.00 37.69 3.95
5897 6660 1.134530 CATCGCAGTCGGTCTCGTTC 61.135 60.000 0.00 0.00 37.69 3.95
5898 6661 1.154016 CATCGCAGTCGGTCTCGTT 60.154 57.895 0.00 0.00 37.69 3.85
5899 6662 1.983196 CTCATCGCAGTCGGTCTCGT 61.983 60.000 0.00 0.00 37.69 4.18
5900 6663 1.297967 CTCATCGCAGTCGGTCTCG 60.298 63.158 0.00 0.00 36.13 4.04
5901 6664 0.028770 CTCTCATCGCAGTCGGTCTC 59.971 60.000 0.00 0.00 36.13 3.36
5902 6665 0.393132 TCTCTCATCGCAGTCGGTCT 60.393 55.000 0.00 0.00 36.13 3.85
5903 6666 0.452184 TTCTCTCATCGCAGTCGGTC 59.548 55.000 0.00 0.00 36.13 4.79
5904 6667 0.888619 TTTCTCTCATCGCAGTCGGT 59.111 50.000 0.00 0.00 36.13 4.69
5905 6668 1.996292 TTTTCTCTCATCGCAGTCGG 58.004 50.000 0.00 0.00 36.13 4.79
5906 6669 2.989840 ACTTTTTCTCTCATCGCAGTCG 59.010 45.455 0.00 0.00 0.00 4.18
5907 6670 4.999751 AACTTTTTCTCTCATCGCAGTC 57.000 40.909 0.00 0.00 0.00 3.51
5908 6671 5.297547 TGTAACTTTTTCTCTCATCGCAGT 58.702 37.500 0.00 0.00 0.00 4.40
5909 6672 5.845985 TGTAACTTTTTCTCTCATCGCAG 57.154 39.130 0.00 0.00 0.00 5.18
5910 6673 7.899178 TTATGTAACTTTTTCTCTCATCGCA 57.101 32.000 0.00 0.00 0.00 5.10
5955 6718 9.651718 GGAGCAAAAGTTATATTAGTGAATTCG 57.348 33.333 0.04 0.00 0.00 3.34
5956 6719 9.952188 GGGAGCAAAAGTTATATTAGTGAATTC 57.048 33.333 0.00 0.00 0.00 2.17
5957 6720 8.621286 CGGGAGCAAAAGTTATATTAGTGAATT 58.379 33.333 0.00 0.00 0.00 2.17
5958 6721 8.154649 CGGGAGCAAAAGTTATATTAGTGAAT 57.845 34.615 0.00 0.00 0.00 2.57
5959 6722 7.548196 CGGGAGCAAAAGTTATATTAGTGAA 57.452 36.000 0.00 0.00 0.00 3.18
5985 6748 1.148310 AACTGTCAAGACCGATTGCG 58.852 50.000 0.00 0.00 37.24 4.85
5986 6749 4.742438 TTTAACTGTCAAGACCGATTGC 57.258 40.909 0.00 0.00 0.00 3.56
5987 6750 7.477422 CGTAAATTTAACTGTCAAGACCGATTG 59.523 37.037 0.00 0.00 0.00 2.67
5988 6751 7.360607 CCGTAAATTTAACTGTCAAGACCGATT 60.361 37.037 0.00 0.00 0.00 3.34
5989 6752 6.091713 CCGTAAATTTAACTGTCAAGACCGAT 59.908 38.462 0.00 0.00 0.00 4.18
5990 6753 5.406175 CCGTAAATTTAACTGTCAAGACCGA 59.594 40.000 0.00 0.00 0.00 4.69
5991 6754 5.178067 ACCGTAAATTTAACTGTCAAGACCG 59.822 40.000 0.00 0.00 0.00 4.79
5992 6755 6.203338 TGACCGTAAATTTAACTGTCAAGACC 59.797 38.462 16.96 0.00 37.89 3.85
5993 6756 7.181143 TGACCGTAAATTTAACTGTCAAGAC 57.819 36.000 16.96 0.00 37.89 3.01
5994 6757 7.789273 TTGACCGTAAATTTAACTGTCAAGA 57.211 32.000 22.10 10.91 42.41 3.02
5995 6758 8.126700 ACTTTGACCGTAAATTTAACTGTCAAG 58.873 33.333 23.37 20.68 45.48 3.02
5996 6759 7.987649 ACTTTGACCGTAAATTTAACTGTCAA 58.012 30.769 22.10 22.10 44.22 3.18
5997 6760 7.556733 ACTTTGACCGTAAATTTAACTGTCA 57.443 32.000 16.00 16.00 38.70 3.58
5998 6761 8.124199 TCAACTTTGACCGTAAATTTAACTGTC 58.876 33.333 0.00 7.58 33.29 3.51
5999 6762 7.987649 TCAACTTTGACCGTAAATTTAACTGT 58.012 30.769 0.00 0.00 31.01 3.55
6000 6763 8.844441 TTCAACTTTGACCGTAAATTTAACTG 57.156 30.769 0.00 0.00 36.83 3.16
6001 6764 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
6002 6765 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
6003 6766 7.481642 TGCTTCAACTTTGACCGTAAATTTAA 58.518 30.769 0.00 0.00 36.83 1.52
6004 6767 7.028926 TGCTTCAACTTTGACCGTAAATTTA 57.971 32.000 0.00 0.00 36.83 1.40
6005 6768 5.897050 TGCTTCAACTTTGACCGTAAATTT 58.103 33.333 0.00 0.00 36.83 1.82
6006 6769 5.508200 TGCTTCAACTTTGACCGTAAATT 57.492 34.783 0.00 0.00 36.83 1.82
6007 6770 5.009610 ACATGCTTCAACTTTGACCGTAAAT 59.990 36.000 0.00 0.00 36.83 1.40
6008 6771 4.336993 ACATGCTTCAACTTTGACCGTAAA 59.663 37.500 0.00 0.00 36.83 2.01
6009 6772 3.880490 ACATGCTTCAACTTTGACCGTAA 59.120 39.130 0.00 0.00 36.83 3.18
6010 6773 3.472652 ACATGCTTCAACTTTGACCGTA 58.527 40.909 0.00 0.00 36.83 4.02
6011 6774 2.297701 ACATGCTTCAACTTTGACCGT 58.702 42.857 0.00 0.00 36.83 4.83
6012 6775 4.154015 TGATACATGCTTCAACTTTGACCG 59.846 41.667 0.00 0.00 36.83 4.79
6013 6776 5.182001 AGTGATACATGCTTCAACTTTGACC 59.818 40.000 0.00 0.00 36.83 4.02
6014 6777 6.246420 AGTGATACATGCTTCAACTTTGAC 57.754 37.500 0.00 0.00 36.83 3.18
6015 6778 6.882610 AAGTGATACATGCTTCAACTTTGA 57.117 33.333 0.00 0.00 34.92 2.69
6016 6779 6.919662 ACAAAGTGATACATGCTTCAACTTTG 59.080 34.615 26.39 26.39 41.04 2.77
6017 6780 7.042797 ACAAAGTGATACATGCTTCAACTTT 57.957 32.000 13.81 13.81 0.00 2.66
6018 6781 6.639632 ACAAAGTGATACATGCTTCAACTT 57.360 33.333 0.00 0.94 0.00 2.66
6019 6782 6.639632 AACAAAGTGATACATGCTTCAACT 57.360 33.333 0.00 0.00 0.00 3.16
6020 6783 7.222611 ACAAAACAAAGTGATACATGCTTCAAC 59.777 33.333 0.00 0.00 0.00 3.18
6021 6784 7.264221 ACAAAACAAAGTGATACATGCTTCAA 58.736 30.769 0.00 0.00 0.00 2.69
6022 6785 6.804677 ACAAAACAAAGTGATACATGCTTCA 58.195 32.000 0.00 0.00 0.00 3.02
6023 6786 7.698836 AACAAAACAAAGTGATACATGCTTC 57.301 32.000 0.00 0.00 0.00 3.86
6024 6787 8.491331 AAAACAAAACAAAGTGATACATGCTT 57.509 26.923 0.00 0.00 0.00 3.91
6025 6788 9.593134 TTAAAACAAAACAAAGTGATACATGCT 57.407 25.926 0.00 0.00 0.00 3.79
6026 6789 9.848172 CTTAAAACAAAACAAAGTGATACATGC 57.152 29.630 0.00 0.00 0.00 4.06
6049 6812 5.672051 CACGCACGTGTTTTTCTTATCTTA 58.328 37.500 18.38 0.00 40.91 2.10
6056 6819 0.027586 GAGCACGCACGTGTTTTTCT 59.972 50.000 22.66 11.73 46.90 2.52
6057 6820 1.253044 CGAGCACGCACGTGTTTTTC 61.253 55.000 22.66 14.31 46.90 2.29
6059 6822 2.323105 CGAGCACGCACGTGTTTT 59.677 55.556 22.66 10.23 46.90 2.43
6091 6854 3.876589 TTCGTGGCTTCTCCGTGGC 62.877 63.158 0.00 0.00 37.80 5.01
6094 6857 0.389948 GATGTTCGTGGCTTCTCCGT 60.390 55.000 0.00 0.00 37.80 4.69
6103 6866 0.806102 CTACCCAGCGATGTTCGTGG 60.806 60.000 0.00 0.00 42.81 4.94
6104 6867 0.806102 CCTACCCAGCGATGTTCGTG 60.806 60.000 0.00 0.00 42.81 4.35
6107 6870 1.067821 CTCTCCTACCCAGCGATGTTC 59.932 57.143 0.00 0.00 0.00 3.18
6109 6872 0.259065 TCTCTCCTACCCAGCGATGT 59.741 55.000 0.00 0.00 0.00 3.06
6110 6873 0.958091 CTCTCTCCTACCCAGCGATG 59.042 60.000 0.00 0.00 0.00 3.84
6112 6875 1.227664 CCTCTCTCCTACCCAGCGA 59.772 63.158 0.00 0.00 0.00 4.93
6130 6896 0.314302 CCCTGTACATCGACGGATCC 59.686 60.000 0.00 0.00 0.00 3.36
6136 6902 0.247974 CGTCGTCCCTGTACATCGAC 60.248 60.000 21.56 21.56 44.49 4.20
6139 6905 0.247974 CGTCGTCGTCCCTGTACATC 60.248 60.000 0.00 0.00 0.00 3.06
6171 6937 0.732571 CTGTTGGCCAATAATCGCGT 59.267 50.000 23.66 0.00 0.00 6.01
6193 6959 3.330720 ACTTCCCTGGGGCCTTCG 61.331 66.667 14.00 0.00 34.68 3.79
6200 6966 1.296715 CGAACCTCACTTCCCTGGG 59.703 63.158 6.33 6.33 0.00 4.45
6201 6967 0.037232 GACGAACCTCACTTCCCTGG 60.037 60.000 0.00 0.00 0.00 4.45
6202 6968 0.037232 GGACGAACCTCACTTCCCTG 60.037 60.000 0.00 0.00 35.41 4.45
6203 6969 1.533469 CGGACGAACCTCACTTCCCT 61.533 60.000 0.00 0.00 36.31 4.20
6204 6970 1.080025 CGGACGAACCTCACTTCCC 60.080 63.158 0.00 0.00 36.31 3.97
6205 6971 1.737008 GCGGACGAACCTCACTTCC 60.737 63.158 0.00 0.00 36.31 3.46
6206 6972 1.737008 GGCGGACGAACCTCACTTC 60.737 63.158 0.00 0.00 36.31 3.01
6207 6973 2.342648 GGCGGACGAACCTCACTT 59.657 61.111 0.00 0.00 36.31 3.16
6230 6996 0.604780 GATGGATGGATGGCGACTGG 60.605 60.000 0.00 0.00 0.00 4.00
6237 7003 1.990327 TGAGGATGGATGGATGGATGG 59.010 52.381 0.00 0.00 0.00 3.51
6238 7004 3.371702 GGATGAGGATGGATGGATGGATG 60.372 52.174 0.00 0.00 0.00 3.51
6239 7005 2.851194 GGATGAGGATGGATGGATGGAT 59.149 50.000 0.00 0.00 0.00 3.41
6240 7006 2.157895 AGGATGAGGATGGATGGATGGA 60.158 50.000 0.00 0.00 0.00 3.41
6241 7007 2.026169 CAGGATGAGGATGGATGGATGG 60.026 54.545 0.00 0.00 39.69 3.51
6242 7008 2.026169 CCAGGATGAGGATGGATGGATG 60.026 54.545 0.00 0.00 39.69 3.51
6243 7009 2.276391 CCAGGATGAGGATGGATGGAT 58.724 52.381 0.00 0.00 39.69 3.41
6244 7010 1.738474 CCAGGATGAGGATGGATGGA 58.262 55.000 0.00 0.00 39.69 3.41
6284 7050 4.147449 TCGCGGAGGAGCACATGG 62.147 66.667 6.13 0.00 36.85 3.66
6285 7051 2.584418 CTCGCGGAGGAGCACATG 60.584 66.667 6.13 0.00 36.85 3.21
6305 7071 0.399806 AGATCAGAGGGAGGGAAGGC 60.400 60.000 0.00 0.00 0.00 4.35
6306 7072 2.091055 TGTAGATCAGAGGGAGGGAAGG 60.091 54.545 0.00 0.00 0.00 3.46
6317 7083 0.963856 ACCCGTGCGTGTAGATCAGA 60.964 55.000 0.00 0.00 0.00 3.27
6318 7084 0.802222 CACCCGTGCGTGTAGATCAG 60.802 60.000 0.00 0.00 0.00 2.90
6319 7085 1.214325 CACCCGTGCGTGTAGATCA 59.786 57.895 0.00 0.00 0.00 2.92
6320 7086 4.088421 CACCCGTGCGTGTAGATC 57.912 61.111 0.00 0.00 0.00 2.75
6334 7100 1.003718 GTGGGGAGTACAGTGCACC 60.004 63.158 14.63 0.00 0.00 5.01
6347 7113 2.975799 CAACACGTTCCGGTGGGG 60.976 66.667 0.00 0.00 42.23 4.96
6481 7267 1.305718 GCACTCTCCCTCCTCCAGT 60.306 63.158 0.00 0.00 0.00 4.00
6482 7268 1.001503 AGCACTCTCCCTCCTCCAG 59.998 63.158 0.00 0.00 0.00 3.86
6483 7269 1.000993 GAGCACTCTCCCTCCTCCA 59.999 63.158 0.00 0.00 33.19 3.86
6484 7270 2.124693 CGAGCACTCTCCCTCCTCC 61.125 68.421 0.00 0.00 35.94 4.30
6485 7271 2.781158 GCGAGCACTCTCCCTCCTC 61.781 68.421 0.00 0.00 35.94 3.71
6486 7272 2.757917 GCGAGCACTCTCCCTCCT 60.758 66.667 0.00 0.00 35.94 3.69
6487 7273 3.844090 GGCGAGCACTCTCCCTCC 61.844 72.222 0.00 0.00 35.94 4.30
6568 7404 0.680280 CAGAAAGCAGGGCAGAGCAT 60.680 55.000 0.00 0.00 0.00 3.79
6577 7413 6.037610 GGTACATACAATCTTCAGAAAGCAGG 59.962 42.308 0.00 0.00 32.18 4.85
6582 7418 7.038302 ACAGAGGGTACATACAATCTTCAGAAA 60.038 37.037 0.00 0.00 0.00 2.52
6583 7419 6.440647 ACAGAGGGTACATACAATCTTCAGAA 59.559 38.462 0.00 0.00 0.00 3.02
6585 7421 6.227298 ACAGAGGGTACATACAATCTTCAG 57.773 41.667 0.00 0.00 0.00 3.02
6586 7422 6.440647 AGAACAGAGGGTACATACAATCTTCA 59.559 38.462 0.00 0.00 0.00 3.02
6587 7423 6.758886 CAGAACAGAGGGTACATACAATCTTC 59.241 42.308 0.00 0.00 0.00 2.87
6588 7424 6.213600 ACAGAACAGAGGGTACATACAATCTT 59.786 38.462 0.00 0.00 0.00 2.40
6589 7425 5.721960 ACAGAACAGAGGGTACATACAATCT 59.278 40.000 0.00 0.00 0.00 2.40
6591 7427 6.013725 TGAACAGAACAGAGGGTACATACAAT 60.014 38.462 0.00 0.00 0.00 2.71
6594 7430 5.401531 TGAACAGAACAGAGGGTACATAC 57.598 43.478 0.00 0.00 0.00 2.39
6595 7431 6.428083 TTTGAACAGAACAGAGGGTACATA 57.572 37.500 0.00 0.00 0.00 2.29
6596 7432 4.974645 TTGAACAGAACAGAGGGTACAT 57.025 40.909 0.00 0.00 0.00 2.29
6597 7433 4.703897 CTTTGAACAGAACAGAGGGTACA 58.296 43.478 0.00 0.00 0.00 2.90
6598 7434 3.498777 GCTTTGAACAGAACAGAGGGTAC 59.501 47.826 0.00 0.00 0.00 3.34
6599 7435 3.496160 GGCTTTGAACAGAACAGAGGGTA 60.496 47.826 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.