Multiple sequence alignment - TraesCS1A01G376400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G376400 chr1A 100.000 3335 0 0 1001 4335 550616190 550612856 0.000000e+00 6159.0
1 TraesCS1A01G376400 chr1A 100.000 1925 0 0 4613 6537 550612578 550610654 0.000000e+00 3555.0
2 TraesCS1A01G376400 chr1A 100.000 461 0 0 1 461 550617190 550616730 0.000000e+00 852.0
3 TraesCS1A01G376400 chr1B 96.447 3321 85 14 1001 4300 628518512 628515204 0.000000e+00 5448.0
4 TraesCS1A01G376400 chr1B 90.074 1078 67 18 4721 5773 628514968 628513906 0.000000e+00 1362.0
5 TraesCS1A01G376400 chr1B 86.626 329 27 7 6224 6537 628513272 628512946 1.350000e-91 348.0
6 TraesCS1A01G376400 chr1B 81.265 427 44 16 7 423 628519076 628518676 4.920000e-81 313.0
7 TraesCS1A01G376400 chr1D 95.042 3348 104 15 1002 4300 458117322 458120656 0.000000e+00 5206.0
8 TraesCS1A01G376400 chr1D 86.052 803 88 14 4721 5509 458120891 458121683 0.000000e+00 841.0
9 TraesCS1A01G376400 chr1D 92.040 201 6 3 234 428 458116738 458116934 2.320000e-69 274.0
10 TraesCS1A01G376400 chr1D 90.741 54 3 1 1639 1690 458117922 458117975 3.270000e-08 71.3
11 TraesCS1A01G376400 chr1D 93.333 45 3 0 4615 4659 458120739 458120783 4.230000e-07 67.6
12 TraesCS1A01G376400 chr7B 96.716 670 18 2 1001 1670 133529041 133528376 0.000000e+00 1112.0
13 TraesCS1A01G376400 chr6B 95.324 663 27 3 1001 1663 459251875 459252533 0.000000e+00 1050.0
14 TraesCS1A01G376400 chr6B 94.608 612 29 2 1059 1670 32206828 32206221 0.000000e+00 944.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G376400 chr1A 550610654 550617190 6536 True 3522.00 6159 100.0000 1 6537 3 chr1A.!!$R1 6536
1 TraesCS1A01G376400 chr1B 628512946 628519076 6130 True 1867.75 5448 88.6030 7 6537 4 chr1B.!!$R1 6530
2 TraesCS1A01G376400 chr1D 458116738 458121683 4945 False 1291.98 5206 91.4416 234 5509 5 chr1D.!!$F1 5275
3 TraesCS1A01G376400 chr7B 133528376 133529041 665 True 1112.00 1112 96.7160 1001 1670 1 chr7B.!!$R1 669
4 TraesCS1A01G376400 chr6B 459251875 459252533 658 False 1050.00 1050 95.3240 1001 1663 1 chr6B.!!$F1 662
5 TraesCS1A01G376400 chr6B 32206221 32206828 607 True 944.00 944 94.6080 1059 1670 1 chr6B.!!$R1 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
231 243 0.035458 CAAAGAGCCGTCCACTCCTT 59.965 55.000 0.00 0.00 34.56 3.36 F
1640 1700 0.671251 TTGGTTGTCGCAATTGGACC 59.329 50.000 18.52 9.21 33.46 4.46 F
1734 1794 0.691078 TATGGAGGGCAGGGAGTGTC 60.691 60.000 0.00 0.00 0.00 3.67 F
1862 1922 1.516821 GCTCGAGCACTGCTGAGAG 60.517 63.158 31.91 22.24 39.88 3.20 F
2121 2181 1.552792 AGCCTTACCAACTCAGAGCTC 59.447 52.381 5.27 5.27 0.00 4.09 F
4023 4116 0.771755 AAAGAGTCCCCAAGGGTCAC 59.228 55.000 4.11 0.42 44.74 3.67 F
4137 4230 0.033090 TTGCAATGCAACGCCATGAA 59.967 45.000 17.55 0.00 43.99 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1734 1794 0.104120 TCCCGCGATAGACAACCATG 59.896 55.000 8.23 0.0 39.76 3.66 R
3416 3507 1.720781 AAGTGGAAGCCCATTTTGCT 58.279 45.000 0.00 0.0 45.68 3.91 R
3626 3719 8.689972 CAATCTTTGATAATAACTTCCCTGCTT 58.310 33.333 0.00 0.0 0.00 3.91 R
3834 3927 7.215085 AGACACCACGGATTCCTAATATAAAC 58.785 38.462 0.30 0.0 0.00 2.01 R
4053 4146 4.327680 GCCTTATGTTAATAGGCCTCCTG 58.672 47.826 9.68 0.0 39.57 3.86 R
4890 5034 0.103026 TGAATCTGACGCATCCTCGG 59.897 55.000 0.00 0.0 0.00 4.63 R
6029 6240 0.107945 ATCTCGCCACCAGCTTCTTC 60.108 55.000 0.00 0.0 40.39 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.464036 TCGCGCATTTACTCATCCCT 59.536 50.000 8.75 0.00 0.00 4.20
32 33 8.752005 TTTACTCATCCCTTTGATATCCTTTG 57.248 34.615 0.00 0.00 30.56 2.77
36 37 2.241176 TCCCTTTGATATCCTTTGGCGT 59.759 45.455 0.00 0.00 0.00 5.68
38 39 2.223572 CCTTTGATATCCTTTGGCGTGC 60.224 50.000 0.00 0.00 0.00 5.34
45 46 3.636043 CTTTGGCGTGCGTCGTGT 61.636 61.111 0.00 0.00 42.13 4.49
52 53 1.814211 GCGTGCGTCGTGTTGTAAGT 61.814 55.000 0.00 0.00 42.13 2.24
55 56 1.856597 GTGCGTCGTGTTGTAAGTCTT 59.143 47.619 0.00 0.00 0.00 3.01
63 64 3.183574 CGTGTTGTAAGTCTTCAATGCGA 59.816 43.478 0.00 0.00 0.00 5.10
73 74 0.382873 TTCAATGCGAGCATCATGCC 59.617 50.000 5.84 0.00 46.52 4.40
74 75 0.464916 TCAATGCGAGCATCATGCCT 60.465 50.000 5.84 0.00 46.52 4.75
75 76 0.317854 CAATGCGAGCATCATGCCTG 60.318 55.000 5.84 0.00 46.52 4.85
84 85 2.158505 AGCATCATGCCTGAAGCCTAAT 60.159 45.455 14.36 0.00 45.08 1.73
101 102 1.653151 AATCCCTCGAGCGTAAAAGC 58.347 50.000 6.99 0.00 37.41 3.51
102 103 0.527817 ATCCCTCGAGCGTAAAAGCG 60.528 55.000 6.99 0.00 43.00 4.68
103 104 1.153901 CCCTCGAGCGTAAAAGCGA 60.154 57.895 6.99 0.00 43.00 4.93
107 108 1.917955 CTCGAGCGTAAAAGCGATTCA 59.082 47.619 0.00 0.00 43.00 2.57
108 109 1.652124 TCGAGCGTAAAAGCGATTCAC 59.348 47.619 0.00 0.00 43.00 3.18
167 169 9.179552 CAAATCAAACGATCTTTACATGAAACA 57.820 29.630 0.00 0.00 0.00 2.83
168 170 9.743057 AAATCAAACGATCTTTACATGAAACAA 57.257 25.926 0.00 0.00 0.00 2.83
173 175 8.742554 AACGATCTTTACATGAAACAATTTCC 57.257 30.769 0.00 0.00 38.90 3.13
195 197 8.792830 TTCCAAGAGTTTATATCCTGAAAGTG 57.207 34.615 0.00 0.00 0.00 3.16
196 198 7.918076 TCCAAGAGTTTATATCCTGAAAGTGT 58.082 34.615 0.00 0.00 0.00 3.55
229 241 0.250513 ATCAAAGAGCCGTCCACTCC 59.749 55.000 0.00 0.00 34.56 3.85
230 242 0.832135 TCAAAGAGCCGTCCACTCCT 60.832 55.000 0.00 0.00 34.56 3.69
231 243 0.035458 CAAAGAGCCGTCCACTCCTT 59.965 55.000 0.00 0.00 34.56 3.36
232 244 0.765510 AAAGAGCCGTCCACTCCTTT 59.234 50.000 0.00 0.00 34.56 3.11
261 276 4.934515 TCAAACCCGTTTAAATCCACAAC 58.065 39.130 0.00 0.00 0.00 3.32
262 277 4.401519 TCAAACCCGTTTAAATCCACAACA 59.598 37.500 0.00 0.00 0.00 3.33
263 278 5.105473 TCAAACCCGTTTAAATCCACAACAA 60.105 36.000 0.00 0.00 0.00 2.83
310 325 1.228429 CGCCCTGTTTCCCTTTCCA 60.228 57.895 0.00 0.00 0.00 3.53
328 343 2.421739 CCTCCACCTTATCCGCCG 59.578 66.667 0.00 0.00 0.00 6.46
333 348 3.912907 ACCTTATCCGCCGCCGAG 61.913 66.667 0.00 0.00 36.29 4.63
354 369 4.678743 AGCCGGCCCAAAACCTCC 62.679 66.667 26.15 0.00 0.00 4.30
428 453 4.579384 CAACCACCGCCACCACCT 62.579 66.667 0.00 0.00 0.00 4.00
429 454 4.265056 AACCACCGCCACCACCTC 62.265 66.667 0.00 0.00 0.00 3.85
1163 1194 4.719106 ACGACGACGAGCCCTCCT 62.719 66.667 15.32 0.00 42.66 3.69
1164 1195 3.878519 CGACGACGAGCCCTCCTC 61.879 72.222 0.00 0.00 42.66 3.71
1165 1196 3.519930 GACGACGAGCCCTCCTCC 61.520 72.222 0.00 0.00 37.27 4.30
1640 1700 0.671251 TTGGTTGTCGCAATTGGACC 59.329 50.000 18.52 9.21 33.46 4.46
1675 1735 6.272318 TGTTTGTTCCAGTGAATTTGATGTC 58.728 36.000 0.00 0.00 31.98 3.06
1688 1748 7.756722 GTGAATTTGATGTCCAGTCTTTATTGG 59.243 37.037 0.00 0.00 33.82 3.16
1693 1753 5.248248 TGATGTCCAGTCTTTATTGGTCAGA 59.752 40.000 0.00 0.00 34.87 3.27
1708 1768 2.096248 GTCAGAGACGAACAGGAGGAT 58.904 52.381 0.00 0.00 0.00 3.24
1734 1794 0.691078 TATGGAGGGCAGGGAGTGTC 60.691 60.000 0.00 0.00 0.00 3.67
1862 1922 1.516821 GCTCGAGCACTGCTGAGAG 60.517 63.158 31.91 22.24 39.88 3.20
2121 2181 1.552792 AGCCTTACCAACTCAGAGCTC 59.447 52.381 5.27 5.27 0.00 4.09
2235 2295 4.622740 GCTTTTACTGCTGGCATTAAACAG 59.377 41.667 14.56 14.70 33.08 3.16
2258 2318 4.439289 GCTGCTTATTGCTTCCTAACCTTG 60.439 45.833 0.00 0.00 43.37 3.61
2401 2461 7.504924 TGATGTCAGACGAAATAAAGGTTTT 57.495 32.000 0.00 0.00 0.00 2.43
2811 2882 6.942576 CCTGGATCCTGTACCAATAAAATAGG 59.057 42.308 14.23 1.13 35.67 2.57
2882 2953 6.767524 TCTTTTCTTTAGGAACTTGCACAA 57.232 33.333 0.00 0.00 41.75 3.33
2888 2959 8.458573 TTCTTTAGGAACTTGCACAATTTAGA 57.541 30.769 0.00 0.00 41.75 2.10
3626 3719 6.588719 ACAGGCTCAAGCAAAAATACATAA 57.411 33.333 4.13 0.00 44.36 1.90
3787 3880 6.262273 TGGTAAGTTTCTTGAACAATCACCTC 59.738 38.462 0.00 0.00 40.84 3.85
3789 3882 6.966534 AAGTTTCTTGAACAATCACCTCAT 57.033 33.333 0.00 0.00 40.84 2.90
3807 3900 8.902806 TCACCTCATAACATGATTAACCATTTC 58.097 33.333 0.00 0.00 38.85 2.17
3984 4077 4.024387 CGACTTCTAGAGTATGAGAGTGGC 60.024 50.000 0.00 0.00 39.19 5.01
4023 4116 0.771755 AAAGAGTCCCCAAGGGTCAC 59.228 55.000 4.11 0.42 44.74 3.67
4113 4206 2.200373 AGGCTAAGGCATTGAAACGT 57.800 45.000 0.00 0.00 40.87 3.99
4137 4230 0.033090 TTGCAATGCAACGCCATGAA 59.967 45.000 17.55 0.00 43.99 2.57
4173 4268 9.337396 TGTATATTAGGTTGCCATAAAAGAGTG 57.663 33.333 0.00 0.00 0.00 3.51
4183 4278 5.013704 TGCCATAAAAGAGTGGACTTCCTTA 59.986 40.000 0.00 0.00 37.72 2.69
4186 4281 7.338710 CCATAAAAGAGTGGACTTCCTTATGA 58.661 38.462 11.54 0.00 35.18 2.15
4215 4310 6.486320 TCTTTAAACTCATGACTTGTCATGCA 59.514 34.615 28.85 19.78 45.11 3.96
4216 4311 4.494350 AAACTCATGACTTGTCATGCAC 57.506 40.909 28.85 0.00 45.11 4.57
4217 4312 3.413846 ACTCATGACTTGTCATGCACT 57.586 42.857 28.85 15.86 45.11 4.40
4218 4313 3.332919 ACTCATGACTTGTCATGCACTC 58.667 45.455 28.85 0.00 45.11 3.51
4219 4314 3.244318 ACTCATGACTTGTCATGCACTCA 60.244 43.478 28.85 16.19 45.11 3.41
4220 4315 3.939592 CTCATGACTTGTCATGCACTCAT 59.060 43.478 28.85 1.95 45.11 2.90
4255 4350 5.013913 AGCCAGCATATAGATCAACTGGAAT 59.986 40.000 10.90 0.00 46.10 3.01
4267 4362 7.938715 AGATCAACTGGAATTCAATATGAAGC 58.061 34.615 7.93 3.97 40.05 3.86
4269 4364 7.465353 TCAACTGGAATTCAATATGAAGCAA 57.535 32.000 7.93 0.00 40.05 3.91
4294 4389 6.117911 TGAAGCGTGATTTGGTATGTAATG 57.882 37.500 0.00 0.00 0.00 1.90
4300 4395 7.551262 AGCGTGATTTGGTATGTAATGTTTCTA 59.449 33.333 0.00 0.00 0.00 2.10
4301 4396 8.342634 GCGTGATTTGGTATGTAATGTTTCTAT 58.657 33.333 0.00 0.00 0.00 1.98
4654 4749 7.864686 TGAGTTGTAGAAAAGACACATCATTG 58.135 34.615 0.00 0.00 0.00 2.82
4667 4762 9.730705 AAGACACATCATTGTTATATAGATGGG 57.269 33.333 8.78 8.78 43.78 4.00
4668 4763 9.104713 AGACACATCATTGTTATATAGATGGGA 57.895 33.333 14.76 0.00 41.44 4.37
4669 4764 9.896645 GACACATCATTGTTATATAGATGGGAT 57.103 33.333 14.76 3.50 41.44 3.85
4687 4807 1.547372 GATTTGCACACTGGCTTCCAT 59.453 47.619 0.00 0.00 30.82 3.41
4702 4822 3.005155 GCTTCCATGCCAGGTTCATATTC 59.995 47.826 0.00 0.00 0.00 1.75
4711 4831 3.758023 CCAGGTTCATATTCACTTGTGCA 59.242 43.478 0.00 0.00 0.00 4.57
4712 4832 4.379813 CCAGGTTCATATTCACTTGTGCAC 60.380 45.833 10.75 10.75 0.00 4.57
4713 4833 4.456911 CAGGTTCATATTCACTTGTGCACT 59.543 41.667 19.41 0.00 0.00 4.40
4714 4834 4.456911 AGGTTCATATTCACTTGTGCACTG 59.543 41.667 19.41 13.21 0.00 3.66
4715 4835 4.161333 GTTCATATTCACTTGTGCACTGC 58.839 43.478 19.41 0.00 0.00 4.40
4717 4837 4.011698 TCATATTCACTTGTGCACTGCAT 58.988 39.130 19.41 6.67 41.91 3.96
4718 4838 5.184711 TCATATTCACTTGTGCACTGCATA 58.815 37.500 19.41 8.73 41.91 3.14
4719 4839 5.647225 TCATATTCACTTGTGCACTGCATAA 59.353 36.000 19.41 9.99 41.91 1.90
4727 4868 2.035704 TGTGCACTGCATAAGGTTTTGG 59.964 45.455 19.41 0.00 41.91 3.28
4728 4869 1.617850 TGCACTGCATAAGGTTTTGGG 59.382 47.619 0.00 0.00 31.71 4.12
4788 4929 9.233649 GGCAGATGACTATACTTACACTAGTAT 57.766 37.037 0.00 0.00 42.46 2.12
4821 4965 7.072581 TCCTATCTGTCTTCCTAGTACATCTCA 59.927 40.741 0.00 0.00 0.00 3.27
4837 4981 9.416794 AGTACATCTCATTCATCGATTAATGAC 57.583 33.333 24.39 16.59 37.23 3.06
4839 4983 8.531622 ACATCTCATTCATCGATTAATGACTC 57.468 34.615 24.39 0.00 37.23 3.36
4840 4984 7.601886 ACATCTCATTCATCGATTAATGACTCC 59.398 37.037 24.39 0.00 37.23 3.85
4853 4997 1.278537 TGACTCCCTGATGTGATGCA 58.721 50.000 0.00 0.00 0.00 3.96
4890 5034 1.338655 GGAGGACTACGATGAAGAGGC 59.661 57.143 0.00 0.00 0.00 4.70
4899 5043 0.602372 GATGAAGAGGCCGAGGATGC 60.602 60.000 0.00 0.00 0.00 3.91
4900 5044 2.279784 GAAGAGGCCGAGGATGCG 60.280 66.667 0.00 0.00 0.00 4.73
4905 5049 3.838271 GGCCGAGGATGCGTCAGA 61.838 66.667 8.47 0.00 0.00 3.27
4948 5092 2.639839 AGCGGGCTATGATGAGGTAATT 59.360 45.455 0.00 0.00 0.00 1.40
4956 5100 9.113838 GGGCTATGATGAGGTAATTATTATGTG 57.886 37.037 0.00 0.00 0.00 3.21
4957 5101 8.616076 GGCTATGATGAGGTAATTATTATGTGC 58.384 37.037 0.00 0.00 0.00 4.57
4959 5103 9.896645 CTATGATGAGGTAATTATTATGTGCCT 57.103 33.333 0.00 0.00 0.00 4.75
4960 5104 7.984422 TGATGAGGTAATTATTATGTGCCTG 57.016 36.000 0.00 0.00 0.00 4.85
4961 5105 7.517320 TGATGAGGTAATTATTATGTGCCTGT 58.483 34.615 0.00 0.00 0.00 4.00
4962 5106 7.445096 TGATGAGGTAATTATTATGTGCCTGTG 59.555 37.037 0.00 0.00 0.00 3.66
4965 5109 7.713507 TGAGGTAATTATTATGTGCCTGTGTAC 59.286 37.037 0.00 0.00 0.00 2.90
4967 5111 6.206048 GGTAATTATTATGTGCCTGTGTACCC 59.794 42.308 0.00 0.00 0.00 3.69
4984 5128 1.981495 ACCCTATCATGCCTTCCTAGC 59.019 52.381 0.00 0.00 0.00 3.42
5000 5144 5.164620 TCCTAGCACATCTTGTTCATTGA 57.835 39.130 0.00 0.00 0.00 2.57
5002 5146 6.182627 TCCTAGCACATCTTGTTCATTGATT 58.817 36.000 0.00 0.00 0.00 2.57
5051 5195 7.202195 GGAACAAATTAGGGTATGGAGGACTAT 60.202 40.741 0.00 0.00 0.00 2.12
5116 5260 0.459585 TAGGTGGAATCGCACGCTTC 60.460 55.000 0.00 0.00 0.00 3.86
5275 5431 6.815142 ACACAAACGGATCAACTATAACTACC 59.185 38.462 0.00 0.00 0.00 3.18
5344 5503 4.530553 TGATCTGAAGCCTGTGTAGGTTTA 59.469 41.667 0.00 0.00 46.15 2.01
5362 5521 7.951530 AGGTTTAATTTGAAGCAACATTCAG 57.048 32.000 5.98 0.00 40.16 3.02
5363 5522 6.930722 AGGTTTAATTTGAAGCAACATTCAGG 59.069 34.615 5.98 0.00 40.16 3.86
5364 5523 6.147656 GGTTTAATTTGAAGCAACATTCAGGG 59.852 38.462 0.00 0.00 40.16 4.45
5365 5524 6.662865 TTAATTTGAAGCAACATTCAGGGA 57.337 33.333 0.00 0.00 40.16 4.20
5366 5525 5.549742 AATTTGAAGCAACATTCAGGGAA 57.450 34.783 0.00 0.00 40.16 3.97
5367 5526 4.589216 TTTGAAGCAACATTCAGGGAAG 57.411 40.909 0.00 0.00 40.16 3.46
5368 5527 3.507162 TGAAGCAACATTCAGGGAAGA 57.493 42.857 0.00 0.00 34.31 2.87
5409 5569 1.134670 GGTGGGTGCTAGTCATCAGAC 60.135 57.143 0.00 0.00 45.31 3.51
5428 5588 0.994995 CGGATCGCTTCTCACTTGTG 59.005 55.000 0.00 0.00 0.00 3.33
5494 5658 6.321945 TGGTATAGCTCGTTATTACAGAACCA 59.678 38.462 3.20 0.00 0.00 3.67
5510 5674 5.241506 ACAGAACCAGTTATTTGTGGACATG 59.758 40.000 0.00 0.00 37.27 3.21
5511 5675 5.241506 CAGAACCAGTTATTTGTGGACATGT 59.758 40.000 0.00 0.00 37.27 3.21
5512 5676 5.241506 AGAACCAGTTATTTGTGGACATGTG 59.758 40.000 1.15 0.00 37.27 3.21
5561 5730 4.691685 ACATGTTTTTAGTCGCGGATTACA 59.308 37.500 6.13 2.52 0.00 2.41
5573 5742 3.807622 CGCGGATTACATTCACCTTACAT 59.192 43.478 0.00 0.00 0.00 2.29
5574 5743 4.318760 CGCGGATTACATTCACCTTACATG 60.319 45.833 0.00 0.00 0.00 3.21
5581 5757 9.764363 GATTACATTCACCTTACATGTATCAGA 57.236 33.333 6.36 0.40 34.21 3.27
5591 5767 7.345653 ACCTTACATGTATCAGAATCAGGAAGA 59.654 37.037 18.49 0.00 0.00 2.87
5594 5770 7.429374 ACATGTATCAGAATCAGGAAGAGAA 57.571 36.000 0.00 0.00 0.00 2.87
5639 5815 1.690985 AGGGTTGAGCTCCTAGCCC 60.691 63.158 23.16 19.79 43.77 5.19
5645 5821 1.781786 TGAGCTCCTAGCCCAGTAAG 58.218 55.000 12.15 0.00 43.77 2.34
5648 5824 2.298729 GAGCTCCTAGCCCAGTAAGATG 59.701 54.545 0.87 0.00 43.77 2.90
5656 5832 1.952296 GCCCAGTAAGATGCTGAATGG 59.048 52.381 0.00 0.00 36.12 3.16
5659 5835 3.614092 CCAGTAAGATGCTGAATGGTGT 58.386 45.455 0.00 0.00 36.12 4.16
5660 5836 4.012374 CCAGTAAGATGCTGAATGGTGTT 58.988 43.478 0.00 0.00 36.12 3.32
5661 5837 5.185454 CCAGTAAGATGCTGAATGGTGTTA 58.815 41.667 0.00 0.00 36.12 2.41
5675 5851 8.239038 TGAATGGTGTTATTACAGGTCAAAAA 57.761 30.769 0.00 0.00 34.24 1.94
5717 5896 6.507958 TTTCTTGTGAATTGTTGACAGACA 57.492 33.333 0.00 0.00 31.56 3.41
5742 5921 4.501229 GGAACAAATGTCATGCAGAAACCA 60.501 41.667 0.00 0.00 0.00 3.67
5750 5929 4.223700 TGTCATGCAGAAACCAGTAGAGAT 59.776 41.667 0.00 0.00 0.00 2.75
5767 5975 7.336176 CAGTAGAGATTTTGGTAAGGGTAAACC 59.664 40.741 0.00 0.00 40.67 3.27
5785 5993 2.306847 ACCTGGTTCGACTGCAAAATT 58.693 42.857 0.00 0.00 0.00 1.82
5801 6010 4.399934 GCAAAATTCATACCTTTACCCCGA 59.600 41.667 0.00 0.00 0.00 5.14
5822 6031 1.837648 TTGCATCGTTTGTGTTGCTG 58.162 45.000 0.00 0.00 36.10 4.41
5838 6047 3.690475 TGCTGCCTAGATCATGGTATG 57.310 47.619 0.00 0.00 0.00 2.39
5850 6059 4.787135 TCATGGTATGAATAGCCAACCA 57.213 40.909 0.00 0.00 43.93 3.67
5860 6069 2.123988 TAGCCAACCAGTTTTGCGCG 62.124 55.000 0.00 0.00 31.65 6.86
5872 6081 0.882484 TTTGCGCGGTGAGTTGATCA 60.882 50.000 8.83 0.00 34.79 2.92
5879 6088 3.243877 CGCGGTGAGTTGATCAAATCTAG 59.756 47.826 29.72 22.15 40.43 2.43
5907 6116 4.678840 GCTCCATAGCCTTGGAATTGTTTG 60.679 45.833 6.67 0.00 45.03 2.93
5922 6132 6.865205 GGAATTGTTTGAAGAGAAGAACATGG 59.135 38.462 0.00 0.00 32.64 3.66
5928 6138 2.503895 AGAGAAGAACATGGGCAAGG 57.496 50.000 0.00 0.00 0.00 3.61
5930 6140 2.912956 AGAGAAGAACATGGGCAAGGTA 59.087 45.455 0.00 0.00 0.00 3.08
5936 6146 1.767759 ACATGGGCAAGGTAATCTGC 58.232 50.000 0.00 0.00 0.00 4.26
5949 6159 4.396166 AGGTAATCTGCGGATTTGTTTCAG 59.604 41.667 25.24 0.00 41.75 3.02
5960 6171 6.470235 GCGGATTTGTTTCAGTCAATCAATAG 59.530 38.462 0.00 0.00 0.00 1.73
5979 6190 7.114754 TCAATAGAAAGGAATGTGAGCAAGAT 58.885 34.615 0.00 0.00 0.00 2.40
5980 6191 6.939132 ATAGAAAGGAATGTGAGCAAGATG 57.061 37.500 0.00 0.00 0.00 2.90
5981 6192 4.914983 AGAAAGGAATGTGAGCAAGATGA 58.085 39.130 0.00 0.00 0.00 2.92
5984 6195 3.607741 AGGAATGTGAGCAAGATGACTG 58.392 45.455 0.00 0.00 0.00 3.51
5985 6196 3.262660 AGGAATGTGAGCAAGATGACTGA 59.737 43.478 0.00 0.00 0.00 3.41
5987 6198 4.142730 GGAATGTGAGCAAGATGACTGAAC 60.143 45.833 0.00 0.00 0.00 3.18
5988 6199 2.407090 TGTGAGCAAGATGACTGAACG 58.593 47.619 0.00 0.00 0.00 3.95
5989 6200 2.224042 TGTGAGCAAGATGACTGAACGT 60.224 45.455 0.00 0.00 0.00 3.99
5990 6201 2.802816 GTGAGCAAGATGACTGAACGTT 59.197 45.455 0.00 0.00 0.00 3.99
5991 6202 3.059884 TGAGCAAGATGACTGAACGTTC 58.940 45.455 21.42 21.42 0.00 3.95
5992 6203 3.243873 TGAGCAAGATGACTGAACGTTCT 60.244 43.478 27.32 9.83 0.00 3.01
5995 6206 3.494626 GCAAGATGACTGAACGTTCTGAA 59.505 43.478 33.36 23.14 0.00 3.02
5996 6207 4.153117 GCAAGATGACTGAACGTTCTGAAT 59.847 41.667 33.36 25.82 0.00 2.57
5998 6209 4.887748 AGATGACTGAACGTTCTGAATGT 58.112 39.130 33.36 22.76 0.00 2.71
6000 6211 5.760253 AGATGACTGAACGTTCTGAATGTTT 59.240 36.000 33.36 15.64 40.53 2.83
6001 6212 5.403897 TGACTGAACGTTCTGAATGTTTC 57.596 39.130 33.36 21.86 40.53 2.78
6002 6213 4.873259 TGACTGAACGTTCTGAATGTTTCA 59.127 37.500 33.36 23.68 40.53 2.69
6015 6226 6.480524 TGAATGTTTCAGATTCGACGAAAT 57.519 33.333 15.22 3.53 34.08 2.17
6016 6227 6.898041 TGAATGTTTCAGATTCGACGAAATT 58.102 32.000 15.22 6.96 34.08 1.82
6017 6228 6.796552 TGAATGTTTCAGATTCGACGAAATTG 59.203 34.615 15.22 15.01 34.08 2.32
6018 6229 5.029650 TGTTTCAGATTCGACGAAATTGG 57.970 39.130 15.22 5.10 31.78 3.16
6021 6232 5.469373 TTCAGATTCGACGAAATTGGATG 57.531 39.130 15.22 7.40 0.00 3.51
6023 6234 2.614057 AGATTCGACGAAATTGGATGCC 59.386 45.455 15.22 0.00 0.00 4.40
6024 6235 2.107950 TTCGACGAAATTGGATGCCT 57.892 45.000 8.05 0.00 0.00 4.75
6026 6237 2.821546 TCGACGAAATTGGATGCCTAG 58.178 47.619 0.00 0.00 0.00 3.02
6028 6239 2.741878 CGACGAAATTGGATGCCTAGGT 60.742 50.000 11.31 0.00 0.00 3.08
6029 6240 2.614057 GACGAAATTGGATGCCTAGGTG 59.386 50.000 11.31 0.00 0.00 4.00
6030 6241 2.238646 ACGAAATTGGATGCCTAGGTGA 59.761 45.455 11.31 0.00 0.00 4.02
6031 6242 3.278574 CGAAATTGGATGCCTAGGTGAA 58.721 45.455 11.31 0.00 0.00 3.18
6032 6243 3.313526 CGAAATTGGATGCCTAGGTGAAG 59.686 47.826 11.31 0.00 0.00 3.02
6033 6244 4.526970 GAAATTGGATGCCTAGGTGAAGA 58.473 43.478 11.31 0.00 0.00 2.87
6034 6245 4.591321 AATTGGATGCCTAGGTGAAGAA 57.409 40.909 11.31 0.00 0.00 2.52
6035 6246 3.634397 TTGGATGCCTAGGTGAAGAAG 57.366 47.619 11.31 0.00 0.00 2.85
6036 6247 1.210478 TGGATGCCTAGGTGAAGAAGC 59.790 52.381 11.31 0.00 0.00 3.86
6038 6249 2.559440 GATGCCTAGGTGAAGAAGCTG 58.441 52.381 11.31 0.00 37.17 4.24
6041 6252 1.677217 GCCTAGGTGAAGAAGCTGGTG 60.677 57.143 11.31 0.00 37.17 4.17
6042 6253 1.065854 CCTAGGTGAAGAAGCTGGTGG 60.066 57.143 0.00 0.00 37.17 4.61
6043 6254 0.324943 TAGGTGAAGAAGCTGGTGGC 59.675 55.000 0.00 0.00 37.17 5.01
6053 6264 3.460648 GCTGGTGGCGAGATACTTT 57.539 52.632 0.00 0.00 0.00 2.66
6054 6265 1.291132 GCTGGTGGCGAGATACTTTC 58.709 55.000 0.00 0.00 0.00 2.62
6055 6266 1.941325 CTGGTGGCGAGATACTTTCC 58.059 55.000 0.00 0.00 0.00 3.13
6056 6267 1.482593 CTGGTGGCGAGATACTTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
6057 6268 1.480954 TGGTGGCGAGATACTTTCCTC 59.519 52.381 0.00 0.00 0.00 3.71
6063 6274 3.422417 CGAGATACTTTCCTCGCTCAA 57.578 47.619 0.00 0.00 44.35 3.02
6065 6276 3.978217 CGAGATACTTTCCTCGCTCAATC 59.022 47.826 0.00 0.00 44.35 2.67
6067 6278 3.381908 AGATACTTTCCTCGCTCAATCGT 59.618 43.478 0.00 0.00 0.00 3.73
6068 6279 1.997669 ACTTTCCTCGCTCAATCGTC 58.002 50.000 0.00 0.00 0.00 4.20
6070 6281 1.656095 CTTTCCTCGCTCAATCGTCAC 59.344 52.381 0.00 0.00 0.00 3.67
6071 6282 0.456142 TTCCTCGCTCAATCGTCACG 60.456 55.000 0.00 0.00 0.00 4.35
6072 6283 1.136774 CCTCGCTCAATCGTCACGA 59.863 57.895 0.28 0.28 41.13 4.35
6074 6285 1.002792 CCTCGCTCAATCGTCACGATA 60.003 52.381 14.36 0.00 46.30 2.92
6075 6286 2.540973 CCTCGCTCAATCGTCACGATAA 60.541 50.000 14.36 4.01 46.30 1.75
6076 6287 3.105937 CTCGCTCAATCGTCACGATAAA 58.894 45.455 14.36 3.62 46.30 1.40
6077 6288 3.503891 TCGCTCAATCGTCACGATAAAA 58.496 40.909 14.36 0.93 46.30 1.52
6080 6291 4.201589 CGCTCAATCGTCACGATAAAAAGT 60.202 41.667 14.36 0.00 46.30 2.66
6081 6292 5.618561 GCTCAATCGTCACGATAAAAAGTT 58.381 37.500 14.36 0.00 46.30 2.66
6083 6294 6.677411 GCTCAATCGTCACGATAAAAAGTTAC 59.323 38.462 14.36 0.00 46.30 2.50
6084 6295 6.744418 TCAATCGTCACGATAAAAAGTTACG 58.256 36.000 14.36 0.00 46.30 3.18
6085 6296 4.551056 TCGTCACGATAAAAAGTTACGC 57.449 40.909 0.00 0.00 37.73 4.42
6086 6297 3.980134 TCGTCACGATAAAAAGTTACGCA 59.020 39.130 0.00 0.00 37.73 5.24
6087 6298 4.443725 TCGTCACGATAAAAAGTTACGCAA 59.556 37.500 0.00 0.00 37.73 4.85
6088 6299 5.118971 TCGTCACGATAAAAAGTTACGCAAT 59.881 36.000 0.00 0.00 37.73 3.56
6089 6300 5.786574 CGTCACGATAAAAAGTTACGCAATT 59.213 36.000 0.00 0.00 32.53 2.32
6090 6301 6.023564 CGTCACGATAAAAAGTTACGCAATTC 60.024 38.462 0.00 0.00 32.53 2.17
6091 6302 7.013529 GTCACGATAAAAAGTTACGCAATTCT 58.986 34.615 0.00 0.00 0.00 2.40
6092 6303 8.164153 GTCACGATAAAAAGTTACGCAATTCTA 58.836 33.333 0.00 0.00 0.00 2.10
6093 6304 8.164153 TCACGATAAAAAGTTACGCAATTCTAC 58.836 33.333 0.00 0.00 0.00 2.59
6094 6305 8.166706 CACGATAAAAAGTTACGCAATTCTACT 58.833 33.333 0.00 0.00 0.00 2.57
6095 6306 8.715088 ACGATAAAAAGTTACGCAATTCTACTT 58.285 29.630 0.00 0.00 0.00 2.24
6101 6312 9.702494 AAAAGTTACGCAATTCTACTTACTAGT 57.298 29.630 0.00 0.00 38.44 2.57
6128 6339 4.756084 AACTAGAGTTGCTGCAATTCAC 57.244 40.909 30.85 15.63 36.80 3.18
6130 6341 1.882912 AGAGTTGCTGCAATTCACGA 58.117 45.000 30.85 2.37 33.48 4.35
6131 6342 2.430465 AGAGTTGCTGCAATTCACGAT 58.570 42.857 30.85 14.02 33.48 3.73
6133 6344 4.002982 AGAGTTGCTGCAATTCACGATAA 58.997 39.130 30.85 0.19 33.48 1.75
6134 6345 4.455533 AGAGTTGCTGCAATTCACGATAAA 59.544 37.500 30.85 0.00 33.48 1.40
6143 6354 4.173256 CAATTCACGATAAAAAGCACCCC 58.827 43.478 0.00 0.00 0.00 4.95
6144 6355 2.871096 TCACGATAAAAAGCACCCCT 57.129 45.000 0.00 0.00 0.00 4.79
6145 6356 3.985019 TCACGATAAAAAGCACCCCTA 57.015 42.857 0.00 0.00 0.00 3.53
6146 6357 3.602483 TCACGATAAAAAGCACCCCTAC 58.398 45.455 0.00 0.00 0.00 3.18
6147 6358 3.008157 TCACGATAAAAAGCACCCCTACA 59.992 43.478 0.00 0.00 0.00 2.74
6148 6359 3.374058 CACGATAAAAAGCACCCCTACAG 59.626 47.826 0.00 0.00 0.00 2.74
6149 6360 2.943033 CGATAAAAAGCACCCCTACAGG 59.057 50.000 0.00 0.00 0.00 4.00
6165 6376 2.175202 ACAGGCTACAGAGACTCAAGG 58.825 52.381 5.02 0.00 40.03 3.61
6167 6378 1.359474 AGGCTACAGAGACTCAAGGGA 59.641 52.381 5.02 0.00 35.38 4.20
6175 6386 3.896888 CAGAGACTCAAGGGATATCTGCT 59.103 47.826 5.02 0.00 0.00 4.24
6176 6387 4.022068 CAGAGACTCAAGGGATATCTGCTC 60.022 50.000 5.02 0.00 0.00 4.26
6177 6388 3.238597 AGACTCAAGGGATATCTGCTCC 58.761 50.000 2.05 0.00 0.00 4.70
6178 6389 1.967066 ACTCAAGGGATATCTGCTCCG 59.033 52.381 2.05 0.00 33.29 4.63
6180 6391 2.366916 CTCAAGGGATATCTGCTCCGTT 59.633 50.000 2.05 0.00 40.54 4.44
6181 6392 2.487934 CAAGGGATATCTGCTCCGTTG 58.512 52.381 9.21 9.21 46.28 4.10
6182 6393 1.794714 AGGGATATCTGCTCCGTTGT 58.205 50.000 2.05 0.00 33.29 3.32
6183 6394 1.414181 AGGGATATCTGCTCCGTTGTG 59.586 52.381 2.05 0.00 33.29 3.33
6184 6395 1.412710 GGGATATCTGCTCCGTTGTGA 59.587 52.381 2.05 0.00 33.29 3.58
6185 6396 2.037772 GGGATATCTGCTCCGTTGTGAT 59.962 50.000 2.05 0.00 33.29 3.06
6186 6397 3.062763 GGATATCTGCTCCGTTGTGATG 58.937 50.000 2.05 0.00 0.00 3.07
6188 6399 2.768253 ATCTGCTCCGTTGTGATGAA 57.232 45.000 0.00 0.00 0.00 2.57
6189 6400 2.542020 TCTGCTCCGTTGTGATGAAA 57.458 45.000 0.00 0.00 0.00 2.69
6191 6402 3.210227 TCTGCTCCGTTGTGATGAAAAA 58.790 40.909 0.00 0.00 0.00 1.94
6193 6404 2.685388 TGCTCCGTTGTGATGAAAAACA 59.315 40.909 0.00 0.00 0.00 2.83
6195 6406 3.003275 GCTCCGTTGTGATGAAAAACAGA 59.997 43.478 0.00 0.00 0.00 3.41
6196 6407 4.527564 CTCCGTTGTGATGAAAAACAGAC 58.472 43.478 0.00 0.00 0.00 3.51
6197 6408 3.942115 TCCGTTGTGATGAAAAACAGACA 59.058 39.130 0.00 0.00 0.00 3.41
6199 6410 5.067153 TCCGTTGTGATGAAAAACAGACAAT 59.933 36.000 0.00 0.00 37.24 2.71
6200 6411 5.399301 CCGTTGTGATGAAAAACAGACAATC 59.601 40.000 0.00 0.00 37.24 2.67
6201 6412 5.113975 CGTTGTGATGAAAAACAGACAATCG 59.886 40.000 0.00 0.00 37.24 3.34
6202 6413 5.107109 TGTGATGAAAAACAGACAATCGG 57.893 39.130 0.00 0.00 0.00 4.18
6203 6414 3.914364 GTGATGAAAAACAGACAATCGGC 59.086 43.478 0.00 0.00 0.00 5.54
6205 6416 4.278170 TGATGAAAAACAGACAATCGGCTT 59.722 37.500 0.00 0.00 0.00 4.35
6207 6418 5.356882 TGAAAAACAGACAATCGGCTTAG 57.643 39.130 0.00 0.00 0.00 2.18
6208 6419 3.831715 AAAACAGACAATCGGCTTAGC 57.168 42.857 0.00 0.00 0.00 3.09
6209 6420 2.770164 AACAGACAATCGGCTTAGCT 57.230 45.000 3.59 0.00 0.00 3.32
6210 6421 2.770164 ACAGACAATCGGCTTAGCTT 57.230 45.000 3.59 0.00 0.00 3.74
6211 6422 3.887621 ACAGACAATCGGCTTAGCTTA 57.112 42.857 3.59 0.00 0.00 3.09
6212 6423 4.202245 ACAGACAATCGGCTTAGCTTAA 57.798 40.909 3.59 0.00 0.00 1.85
6213 6424 4.770795 ACAGACAATCGGCTTAGCTTAAT 58.229 39.130 3.59 0.00 0.00 1.40
6214 6425 5.186198 ACAGACAATCGGCTTAGCTTAATT 58.814 37.500 3.59 0.00 0.00 1.40
6215 6426 5.648092 ACAGACAATCGGCTTAGCTTAATTT 59.352 36.000 3.59 0.00 0.00 1.82
6216 6427 5.967674 CAGACAATCGGCTTAGCTTAATTTG 59.032 40.000 3.59 4.57 0.00 2.32
6218 6429 5.640732 ACAATCGGCTTAGCTTAATTTGTG 58.359 37.500 3.59 0.00 0.00 3.33
6221 6432 2.185262 GGCTTAGCTTAATTTGTGCGC 58.815 47.619 0.00 0.00 0.00 6.09
6222 6433 2.159379 GGCTTAGCTTAATTTGTGCGCT 60.159 45.455 9.73 0.00 34.88 5.92
6274 6666 3.023949 ATGACGGCTGCCTCCACTC 62.024 63.158 17.92 3.93 0.00 3.51
6276 6668 3.005539 ACGGCTGCCTCCACTCAT 61.006 61.111 17.92 0.00 0.00 2.90
6285 6677 1.552337 GCCTCCACTCATCAGTCTCAA 59.448 52.381 0.00 0.00 0.00 3.02
6292 6684 0.171231 TCATCAGTCTCAACGGCGAG 59.829 55.000 16.62 5.73 0.00 5.03
6297 6689 3.303135 TCTCAACGGCGAGCCACT 61.303 61.111 16.62 0.00 35.37 4.00
6298 6690 1.974875 TCTCAACGGCGAGCCACTA 60.975 57.895 16.62 0.00 35.37 2.74
6310 6702 6.373774 ACGGCGAGCCACTATATATATATACC 59.626 42.308 16.62 5.41 35.37 2.73
6312 6704 7.094506 CGGCGAGCCACTATATATATATACCAA 60.095 40.741 15.03 0.00 35.37 3.67
6369 6770 4.590850 ACCTTTTCTTCATCTTGTTGGC 57.409 40.909 0.00 0.00 0.00 4.52
6378 6779 3.609853 TCATCTTGTTGGCGCTCTATTT 58.390 40.909 7.64 0.00 0.00 1.40
6385 6789 7.639039 TCTTGTTGGCGCTCTATTTTATAATG 58.361 34.615 7.64 0.00 0.00 1.90
6388 6792 3.435327 TGGCGCTCTATTTTATAATGCGG 59.565 43.478 7.64 0.00 41.81 5.69
6395 6799 6.614694 TCTATTTTATAATGCGGGCCTCTA 57.385 37.500 0.84 0.00 0.00 2.43
6396 6800 7.195374 TCTATTTTATAATGCGGGCCTCTAT 57.805 36.000 0.84 0.00 0.00 1.98
6403 6807 0.108585 TGCGGGCCTCTATTTCCATC 59.891 55.000 0.84 0.00 0.00 3.51
6405 6809 1.879796 GCGGGCCTCTATTTCCATCTG 60.880 57.143 0.84 0.00 0.00 2.90
6406 6810 1.879796 CGGGCCTCTATTTCCATCTGC 60.880 57.143 0.84 0.00 0.00 4.26
6418 6822 8.762645 TCTATTTCCATCTGCTTTCTTCTTCTA 58.237 33.333 0.00 0.00 0.00 2.10
6422 6826 5.426509 TCCATCTGCTTTCTTCTTCTATGGA 59.573 40.000 0.00 0.00 38.36 3.41
6430 6837 6.312672 GCTTTCTTCTTCTATGGAGAGTCAAC 59.687 42.308 0.00 0.00 31.77 3.18
6442 6849 4.141892 TGGAGAGTCAACGGTGTTCTTAAA 60.142 41.667 0.00 0.00 0.00 1.52
6451 6858 6.091169 TCAACGGTGTTCTTAAACGGATAATC 59.909 38.462 0.00 0.00 38.28 1.75
6477 6884 9.277565 CCGTCTTCTGAAATAAACAAACATATG 57.722 33.333 0.00 0.00 0.00 1.78
6522 6929 5.900242 GGCGATTTCGTTATGCTTAACTAAC 59.100 40.000 17.48 4.81 42.22 2.34
6530 6937 1.525941 TGCTTAACTAACGGGCCAAC 58.474 50.000 4.39 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.464036 AGGGATGAGTAAATGCGCGA 59.536 50.000 12.10 0.00 0.00 5.87
1 2 1.299541 AAGGGATGAGTAAATGCGCG 58.700 50.000 0.00 0.00 0.00 6.86
2 3 2.682856 TCAAAGGGATGAGTAAATGCGC 59.317 45.455 0.00 0.00 0.00 6.09
3 4 6.128172 GGATATCAAAGGGATGAGTAAATGCG 60.128 42.308 4.83 0.00 36.72 4.73
4 5 6.944862 AGGATATCAAAGGGATGAGTAAATGC 59.055 38.462 4.83 0.00 36.72 3.56
5 6 8.930846 AAGGATATCAAAGGGATGAGTAAATG 57.069 34.615 4.83 0.00 36.72 2.32
17 18 2.223572 GCACGCCAAAGGATATCAAAGG 60.224 50.000 4.83 1.99 0.00 3.11
19 20 1.400142 CGCACGCCAAAGGATATCAAA 59.600 47.619 4.83 0.00 0.00 2.69
32 33 2.474842 CTTACAACACGACGCACGCC 62.475 60.000 0.00 0.00 46.94 5.68
36 37 2.121786 GAAGACTTACAACACGACGCA 58.878 47.619 0.00 0.00 0.00 5.24
38 39 4.688063 CATTGAAGACTTACAACACGACG 58.312 43.478 0.00 0.00 0.00 5.12
45 46 3.398406 TGCTCGCATTGAAGACTTACAA 58.602 40.909 0.00 0.00 0.00 2.41
52 53 1.332686 GCATGATGCTCGCATTGAAGA 59.667 47.619 10.72 0.00 40.96 2.87
55 56 0.464916 AGGCATGATGCTCGCATTGA 60.465 50.000 17.84 0.00 44.28 2.57
73 74 1.270041 GCTCGAGGGATTAGGCTTCAG 60.270 57.143 15.58 0.00 0.00 3.02
74 75 0.753262 GCTCGAGGGATTAGGCTTCA 59.247 55.000 15.58 0.00 0.00 3.02
75 76 0.319125 CGCTCGAGGGATTAGGCTTC 60.319 60.000 24.08 0.00 0.00 3.86
84 85 1.153901 CGCTTTTACGCTCGAGGGA 60.154 57.895 33.29 15.63 0.00 4.20
145 147 9.743057 AAATTGTTTCATGTAAAGATCGTTTGA 57.257 25.926 0.00 0.00 0.00 2.69
152 154 9.918630 CTCTTGGAAATTGTTTCATGTAAAGAT 57.081 29.630 4.98 0.00 41.43 2.40
153 155 8.912988 ACTCTTGGAAATTGTTTCATGTAAAGA 58.087 29.630 4.98 4.95 41.43 2.52
168 170 9.981460 ACTTTCAGGATATAAACTCTTGGAAAT 57.019 29.630 0.00 0.00 0.00 2.17
195 197 8.375465 CGGCTCTTTGATTTGAATTTGAATTAC 58.625 33.333 0.00 0.00 0.00 1.89
196 198 8.087750 ACGGCTCTTTGATTTGAATTTGAATTA 58.912 29.630 0.00 0.00 0.00 1.40
229 241 1.892209 ACGGGTTTGAGCACCTAAAG 58.108 50.000 0.00 0.00 36.97 1.85
230 242 2.351706 AACGGGTTTGAGCACCTAAA 57.648 45.000 0.00 0.00 36.97 1.85
231 243 2.351706 AAACGGGTTTGAGCACCTAA 57.648 45.000 0.00 0.00 36.97 2.69
232 244 3.488778 TTAAACGGGTTTGAGCACCTA 57.511 42.857 7.04 0.00 36.97 3.08
261 276 0.676736 TTAGCGGGTTTGGGCTTTTG 59.323 50.000 0.00 0.00 40.58 2.44
262 277 1.415200 TTTAGCGGGTTTGGGCTTTT 58.585 45.000 0.00 0.00 40.58 2.27
263 278 1.415200 TTTTAGCGGGTTTGGGCTTT 58.585 45.000 0.00 0.00 40.58 3.51
293 308 1.185618 GGTGGAAAGGGAAACAGGGC 61.186 60.000 0.00 0.00 0.00 5.19
310 325 2.432300 CGGCGGATAAGGTGGAGGT 61.432 63.158 0.00 0.00 0.00 3.85
399 424 2.517402 TGGTTGGTTGACCCGTGC 60.517 61.111 0.00 0.00 39.01 5.34
1093 1124 1.300233 GATGCGGTCGATGGAGGTC 60.300 63.158 0.00 0.00 0.00 3.85
1357 1391 3.002583 TCCATGGTGAGCTCCGCA 61.003 61.111 12.58 3.92 0.00 5.69
1640 1700 4.037208 ACTGGAACAAACAGAAGATTGCAG 59.963 41.667 0.00 2.73 38.70 4.41
1675 1735 4.082190 TCGTCTCTGACCAATAAAGACTGG 60.082 45.833 0.00 0.00 35.35 4.00
1688 1748 1.535833 TCCTCCTGTTCGTCTCTGAC 58.464 55.000 0.00 0.00 0.00 3.51
1693 1753 3.099905 TGATCAATCCTCCTGTTCGTCT 58.900 45.455 0.00 0.00 0.00 4.18
1708 1768 1.706866 CCCTGCCCTCCATATGATCAA 59.293 52.381 3.65 0.00 0.00 2.57
1734 1794 0.104120 TCCCGCGATAGACAACCATG 59.896 55.000 8.23 0.00 39.76 3.66
1805 1865 4.942944 TGTACTATCTTCACCCTTCCTCA 58.057 43.478 0.00 0.00 0.00 3.86
1862 1922 6.271159 AGTTAGATCCTTCCCCTGATTATCAC 59.729 42.308 0.00 0.00 0.00 3.06
2121 2181 5.569059 CCTTGCTAACTTTCGCAAATTAGTG 59.431 40.000 2.93 0.00 44.54 2.74
2201 2261 2.421424 GCAGTAAAAGCTGTGATGAGGG 59.579 50.000 0.00 0.00 38.65 4.30
2258 2318 2.781681 TCCGGTTTCTCCCTTCAATC 57.218 50.000 0.00 0.00 0.00 2.67
2401 2461 6.969043 AGGGAACAACAATAAGATGGTATCA 58.031 36.000 0.00 0.00 0.00 2.15
2811 2882 2.810274 TCAGAACACTTCATCAGCAAGC 59.190 45.455 0.00 0.00 0.00 4.01
3416 3507 1.720781 AAGTGGAAGCCCATTTTGCT 58.279 45.000 0.00 0.00 45.68 3.91
3544 3636 9.959721 AACTAAGGTTACAAGATTATGTCACAT 57.040 29.630 0.00 0.00 34.75 3.21
3597 3689 8.748412 TGTATTTTTGCTTGAGCCTGTATATTT 58.252 29.630 0.00 0.00 41.18 1.40
3626 3719 8.689972 CAATCTTTGATAATAACTTCCCTGCTT 58.310 33.333 0.00 0.00 0.00 3.91
3830 3923 8.846211 CACCACGGATTCCTAATATAAACAAAT 58.154 33.333 0.30 0.00 0.00 2.32
3834 3927 7.215085 AGACACCACGGATTCCTAATATAAAC 58.785 38.462 0.30 0.00 0.00 2.01
3984 4077 5.975344 TCTTTCGATTGCAACTAGTATACCG 59.025 40.000 0.00 0.00 0.00 4.02
4053 4146 4.327680 GCCTTATGTTAATAGGCCTCCTG 58.672 47.826 9.68 0.00 39.57 3.86
4137 4230 8.491134 TGGCAACCTAATATACATGAACTTACT 58.509 33.333 0.00 0.00 0.00 2.24
4147 4240 9.337396 CACTCTTTTATGGCAACCTAATATACA 57.663 33.333 0.00 0.00 0.00 2.29
4148 4241 8.784043 CCACTCTTTTATGGCAACCTAATATAC 58.216 37.037 0.00 0.00 0.00 1.47
4152 4245 5.652452 GTCCACTCTTTTATGGCAACCTAAT 59.348 40.000 0.00 0.00 35.81 1.73
4215 4310 2.996395 CTGAGGGCCTGCATGAGT 59.004 61.111 12.95 0.00 0.00 3.41
4216 4311 2.516460 GCTGAGGGCCTGCATGAG 60.516 66.667 12.95 0.00 39.25 2.90
4230 4325 4.001652 CCAGTTGATCTATATGCTGGCTG 58.998 47.826 0.00 0.00 37.32 4.85
4255 4350 5.801444 CACGCTTCATTTGCTTCATATTGAA 59.199 36.000 0.00 0.00 34.79 2.69
4267 4362 5.401550 ACATACCAAATCACGCTTCATTTG 58.598 37.500 0.00 0.00 38.98 2.32
4269 4364 6.751514 TTACATACCAAATCACGCTTCATT 57.248 33.333 0.00 0.00 0.00 2.57
4300 4395 9.444600 AACGGACATAGAATAACTTTGTTGTAT 57.555 29.630 0.00 0.00 39.97 2.29
4301 4396 8.836268 AACGGACATAGAATAACTTTGTTGTA 57.164 30.769 0.00 0.00 39.97 2.41
4302 4397 7.739498 AACGGACATAGAATAACTTTGTTGT 57.261 32.000 0.00 0.00 39.97 3.32
4303 4398 9.755064 CTTAACGGACATAGAATAACTTTGTTG 57.245 33.333 0.00 0.00 39.97 3.33
4304 4399 9.715121 TCTTAACGGACATAGAATAACTTTGTT 57.285 29.630 0.00 0.00 39.97 2.83
4305 4400 9.148104 GTCTTAACGGACATAGAATAACTTTGT 57.852 33.333 0.00 0.00 41.90 2.83
4306 4401 9.146984 TGTCTTAACGGACATAGAATAACTTTG 57.853 33.333 0.00 0.00 40.72 2.77
4307 4402 9.367444 CTGTCTTAACGGACATAGAATAACTTT 57.633 33.333 0.00 0.00 43.94 2.66
4308 4403 8.529476 ACTGTCTTAACGGACATAGAATAACTT 58.471 33.333 0.00 0.00 43.94 2.66
4309 4404 8.064336 ACTGTCTTAACGGACATAGAATAACT 57.936 34.615 0.00 0.00 43.94 2.24
4654 4749 7.094634 CCAGTGTGCAAATCCCATCTATATAAC 60.095 40.741 0.00 0.00 0.00 1.89
4659 4754 3.559069 CCAGTGTGCAAATCCCATCTAT 58.441 45.455 0.00 0.00 0.00 1.98
4661 4756 1.843368 CCAGTGTGCAAATCCCATCT 58.157 50.000 0.00 0.00 0.00 2.90
4662 4757 0.174162 GCCAGTGTGCAAATCCCATC 59.826 55.000 0.00 0.00 0.00 3.51
4663 4758 0.251922 AGCCAGTGTGCAAATCCCAT 60.252 50.000 6.40 0.00 0.00 4.00
4664 4759 0.469705 AAGCCAGTGTGCAAATCCCA 60.470 50.000 6.40 0.00 0.00 4.37
4665 4760 0.244721 GAAGCCAGTGTGCAAATCCC 59.755 55.000 6.40 0.00 0.00 3.85
4666 4761 0.244721 GGAAGCCAGTGTGCAAATCC 59.755 55.000 6.40 6.78 0.00 3.01
4667 4762 0.961019 TGGAAGCCAGTGTGCAAATC 59.039 50.000 6.40 2.40 0.00 2.17
4668 4763 1.274167 CATGGAAGCCAGTGTGCAAAT 59.726 47.619 6.40 0.00 36.75 2.32
4669 4764 0.675083 CATGGAAGCCAGTGTGCAAA 59.325 50.000 6.40 0.00 36.75 3.68
4670 4765 1.808531 GCATGGAAGCCAGTGTGCAA 61.809 55.000 5.83 0.00 37.11 4.08
4672 4767 2.570181 GCATGGAAGCCAGTGTGC 59.430 61.111 0.00 0.00 36.75 4.57
4687 4807 3.758023 CACAAGTGAATATGAACCTGGCA 59.242 43.478 0.00 0.00 0.00 4.92
4692 4812 4.726416 CAGTGCACAAGTGAATATGAACC 58.274 43.478 21.04 0.00 0.00 3.62
4702 4822 1.881973 ACCTTATGCAGTGCACAAGTG 59.118 47.619 29.12 22.96 40.92 3.16
4711 4831 1.266178 GCCCCAAAACCTTATGCAGT 58.734 50.000 0.00 0.00 0.00 4.40
4712 4832 1.265236 TGCCCCAAAACCTTATGCAG 58.735 50.000 0.00 0.00 0.00 4.41
4713 4833 1.346068 GTTGCCCCAAAACCTTATGCA 59.654 47.619 0.00 0.00 0.00 3.96
4714 4834 1.346068 TGTTGCCCCAAAACCTTATGC 59.654 47.619 0.00 0.00 0.00 3.14
4715 4835 3.979101 ATGTTGCCCCAAAACCTTATG 57.021 42.857 0.00 0.00 0.00 1.90
4717 4837 6.234177 CAATTTATGTTGCCCCAAAACCTTA 58.766 36.000 0.00 0.00 0.00 2.69
4718 4838 4.991789 ATTTATGTTGCCCCAAAACCTT 57.008 36.364 0.00 0.00 0.00 3.50
4719 4839 4.650734 CAATTTATGTTGCCCCAAAACCT 58.349 39.130 0.00 0.00 0.00 3.50
4747 4888 3.162147 TCTGCCTCACTGACTCTAGTT 57.838 47.619 0.00 0.00 0.00 2.24
4788 4929 7.355101 ACTAGGAAGACAGATAGGACACATAA 58.645 38.462 0.00 0.00 0.00 1.90
4792 4933 6.120905 TGTACTAGGAAGACAGATAGGACAC 58.879 44.000 0.00 0.00 34.82 3.67
4793 4934 6.323210 TGTACTAGGAAGACAGATAGGACA 57.677 41.667 0.00 0.00 36.87 4.02
4794 4935 7.228590 AGATGTACTAGGAAGACAGATAGGAC 58.771 42.308 0.00 0.00 30.98 3.85
4821 4965 6.425210 TCAGGGAGTCATTAATCGATGAAT 57.575 37.500 1.78 1.78 37.75 2.57
4837 4981 2.821378 TGTTTTGCATCACATCAGGGAG 59.179 45.455 0.00 0.00 0.00 4.30
4839 4983 3.663995 TTGTTTTGCATCACATCAGGG 57.336 42.857 0.00 0.00 0.00 4.45
4840 4984 6.311935 CCTATTTTGTTTTGCATCACATCAGG 59.688 38.462 0.00 1.84 0.00 3.86
4853 4997 4.222810 GTCCTCCATGCCCTATTTTGTTTT 59.777 41.667 0.00 0.00 0.00 2.43
4890 5034 0.103026 TGAATCTGACGCATCCTCGG 59.897 55.000 0.00 0.00 0.00 4.63
4899 5043 4.089208 CGTCTTCACTTTCTGAATCTGACG 59.911 45.833 8.18 8.18 43.16 4.35
4900 5044 5.223382 TCGTCTTCACTTTCTGAATCTGAC 58.777 41.667 0.00 0.00 38.26 3.51
4905 5049 5.578727 GCTGTATCGTCTTCACTTTCTGAAT 59.421 40.000 0.00 0.00 38.26 2.57
4948 5092 5.841783 TGATAGGGTACACAGGCACATAATA 59.158 40.000 0.00 0.00 0.00 0.98
4956 5100 1.543429 GGCATGATAGGGTACACAGGC 60.543 57.143 0.00 0.00 38.91 4.85
4957 5101 2.050144 AGGCATGATAGGGTACACAGG 58.950 52.381 0.00 0.00 0.00 4.00
4959 5103 2.438021 GGAAGGCATGATAGGGTACACA 59.562 50.000 0.00 0.00 0.00 3.72
4960 5104 2.706190 AGGAAGGCATGATAGGGTACAC 59.294 50.000 0.00 0.00 0.00 2.90
4961 5105 3.060479 AGGAAGGCATGATAGGGTACA 57.940 47.619 0.00 0.00 0.00 2.90
4962 5106 3.055747 GCTAGGAAGGCATGATAGGGTAC 60.056 52.174 0.00 0.00 0.00 3.34
4965 5109 1.980765 TGCTAGGAAGGCATGATAGGG 59.019 52.381 0.00 0.00 34.56 3.53
4967 5111 3.758755 TGTGCTAGGAAGGCATGATAG 57.241 47.619 0.00 0.00 41.86 2.08
5000 5144 8.896744 CCGCATAAATATCAGGACATCATTAAT 58.103 33.333 0.00 0.00 0.00 1.40
5002 5146 7.619965 TCCGCATAAATATCAGGACATCATTA 58.380 34.615 0.00 0.00 0.00 1.90
5017 5161 7.255801 CCATACCCTAATTTGTTCCGCATAAAT 60.256 37.037 0.00 0.00 0.00 1.40
5022 5166 3.054287 TCCATACCCTAATTTGTTCCGCA 60.054 43.478 0.00 0.00 0.00 5.69
5051 5195 6.239430 CCGATTCATCCTCTTCCTCTTTATCA 60.239 42.308 0.00 0.00 0.00 2.15
5275 5431 1.585521 GGACATGACTACGCGACCG 60.586 63.158 15.93 2.31 41.14 4.79
5344 5503 5.305128 TCTTCCCTGAATGTTGCTTCAAATT 59.695 36.000 0.00 0.00 34.86 1.82
5362 5521 0.179234 GCTAGCACTTCCCTCTTCCC 59.821 60.000 10.63 0.00 0.00 3.97
5363 5522 0.179234 GGCTAGCACTTCCCTCTTCC 59.821 60.000 18.24 0.00 0.00 3.46
5364 5523 1.138069 GAGGCTAGCACTTCCCTCTTC 59.862 57.143 18.24 0.00 40.51 2.87
5365 5524 1.199615 GAGGCTAGCACTTCCCTCTT 58.800 55.000 18.24 0.00 40.51 2.85
5366 5525 0.689412 GGAGGCTAGCACTTCCCTCT 60.689 60.000 18.24 0.78 42.71 3.69
5367 5526 0.978146 TGGAGGCTAGCACTTCCCTC 60.978 60.000 18.24 12.09 42.45 4.30
5368 5527 0.327000 ATGGAGGCTAGCACTTCCCT 60.327 55.000 18.24 10.15 0.00 4.20
5409 5569 0.994995 CACAAGTGAGAAGCGATCCG 59.005 55.000 0.00 0.00 0.00 4.18
5428 5588 0.831307 AAGGCTAATCGTGAGGGTCC 59.169 55.000 0.00 0.00 0.00 4.46
5552 5721 4.574828 ACATGTAAGGTGAATGTAATCCGC 59.425 41.667 0.00 0.00 32.86 5.54
5561 5730 7.935755 CCTGATTCTGATACATGTAAGGTGAAT 59.064 37.037 10.14 15.49 28.09 2.57
5573 5742 5.960811 AGGTTCTCTTCCTGATTCTGATACA 59.039 40.000 0.00 0.00 33.62 2.29
5574 5743 6.478512 AGGTTCTCTTCCTGATTCTGATAC 57.521 41.667 0.00 0.00 33.62 2.24
5591 5767 0.398318 GTCCTGGACTTGCAGGTTCT 59.602 55.000 19.53 0.00 39.51 3.01
5594 5770 1.462238 AGGTCCTGGACTTGCAGGT 60.462 57.895 25.01 0.00 39.51 4.00
5639 5815 6.932356 ATAACACCATTCAGCATCTTACTG 57.068 37.500 0.00 0.00 36.44 2.74
5645 5821 5.590259 ACCTGTAATAACACCATTCAGCATC 59.410 40.000 0.00 0.00 0.00 3.91
5648 5824 4.941263 TGACCTGTAATAACACCATTCAGC 59.059 41.667 0.00 0.00 0.00 4.26
5681 5857 9.681692 CAATTCACAAGAAAACATCATTCAGTA 57.318 29.630 0.00 0.00 37.29 2.74
5683 5859 8.583810 ACAATTCACAAGAAAACATCATTCAG 57.416 30.769 0.00 0.00 37.29 3.02
5717 5896 3.159213 TCTGCATGACATTTGTTCCCT 57.841 42.857 0.00 0.00 0.00 4.20
5742 5921 7.239143 AGGTTTACCCTTACCAAAATCTCTACT 59.761 37.037 0.00 0.00 42.73 2.57
5750 5929 4.539596 ACCAGGTTTACCCTTACCAAAA 57.460 40.909 0.00 0.00 42.73 2.44
5767 5975 3.624326 TGAATTTTGCAGTCGAACCAG 57.376 42.857 0.00 0.00 0.00 4.00
5785 5993 3.054287 TGCAAATCGGGGTAAAGGTATGA 60.054 43.478 0.00 0.00 0.00 2.15
5801 6010 2.796031 CAGCAACACAAACGATGCAAAT 59.204 40.909 0.00 0.00 41.18 2.32
5822 6031 5.104776 TGGCTATTCATACCATGATCTAGGC 60.105 44.000 17.14 17.14 43.28 3.93
5838 6047 2.595386 CGCAAAACTGGTTGGCTATTC 58.405 47.619 2.90 0.00 0.00 1.75
5850 6059 1.092921 TCAACTCACCGCGCAAAACT 61.093 50.000 8.75 0.00 0.00 2.66
5860 6069 4.505922 CGCTCTAGATTTGATCAACTCACC 59.494 45.833 23.16 8.86 32.17 4.02
5872 6081 2.028567 GCTATGGAGCCGCTCTAGATTT 60.029 50.000 19.68 1.72 43.49 2.17
5894 6103 7.483307 TGTTCTTCTCTTCAAACAATTCCAAG 58.517 34.615 0.00 0.00 0.00 3.61
5900 6109 5.279156 GCCCATGTTCTTCTCTTCAAACAAT 60.279 40.000 0.00 0.00 35.46 2.71
5907 6116 2.751806 CCTTGCCCATGTTCTTCTCTTC 59.248 50.000 0.00 0.00 0.00 2.87
5922 6132 1.680338 AATCCGCAGATTACCTTGCC 58.320 50.000 0.00 0.00 41.05 4.52
5928 6138 5.106712 TGACTGAAACAAATCCGCAGATTAC 60.107 40.000 0.00 0.00 42.03 1.89
5930 6140 3.820467 TGACTGAAACAAATCCGCAGATT 59.180 39.130 0.00 0.00 44.86 2.40
5936 6146 7.751732 TCTATTGATTGACTGAAACAAATCCG 58.248 34.615 0.00 0.00 0.00 4.18
5949 6159 7.148188 TGCTCACATTCCTTTCTATTGATTGAC 60.148 37.037 0.00 0.00 0.00 3.18
5960 6171 4.699257 AGTCATCTTGCTCACATTCCTTTC 59.301 41.667 0.00 0.00 0.00 2.62
5979 6190 4.873259 TGAAACATTCAGAACGTTCAGTCA 59.127 37.500 28.78 16.13 34.08 3.41
5980 6191 5.403897 TGAAACATTCAGAACGTTCAGTC 57.596 39.130 28.78 13.92 34.08 3.51
5992 6203 5.915812 TTTCGTCGAATCTGAAACATTCA 57.084 34.783 8.78 0.00 38.17 2.57
5995 6206 5.411361 TCCAATTTCGTCGAATCTGAAACAT 59.589 36.000 8.78 0.00 34.73 2.71
5996 6207 4.752604 TCCAATTTCGTCGAATCTGAAACA 59.247 37.500 8.78 0.00 34.73 2.83
5998 6209 5.673568 GCATCCAATTTCGTCGAATCTGAAA 60.674 40.000 8.78 0.00 36.19 2.69
6000 6211 3.309682 GCATCCAATTTCGTCGAATCTGA 59.690 43.478 8.78 4.23 0.00 3.27
6001 6212 3.546815 GGCATCCAATTTCGTCGAATCTG 60.547 47.826 8.78 8.89 0.00 2.90
6002 6213 2.614057 GGCATCCAATTTCGTCGAATCT 59.386 45.455 8.78 0.00 0.00 2.40
6003 6214 2.614057 AGGCATCCAATTTCGTCGAATC 59.386 45.455 8.78 0.00 0.00 2.52
6006 6217 2.483013 CCTAGGCATCCAATTTCGTCGA 60.483 50.000 0.00 0.00 0.00 4.20
6007 6218 1.867233 CCTAGGCATCCAATTTCGTCG 59.133 52.381 0.00 0.00 0.00 5.12
6008 6219 2.614057 CACCTAGGCATCCAATTTCGTC 59.386 50.000 9.30 0.00 0.00 4.20
6009 6220 2.238646 TCACCTAGGCATCCAATTTCGT 59.761 45.455 9.30 0.00 0.00 3.85
6010 6221 2.917933 TCACCTAGGCATCCAATTTCG 58.082 47.619 9.30 0.00 0.00 3.46
6012 6223 4.591321 TCTTCACCTAGGCATCCAATTT 57.409 40.909 9.30 0.00 0.00 1.82
6013 6224 4.530875 CTTCTTCACCTAGGCATCCAATT 58.469 43.478 9.30 0.00 0.00 2.32
6015 6226 2.356125 GCTTCTTCACCTAGGCATCCAA 60.356 50.000 9.30 0.00 0.00 3.53
6016 6227 1.210478 GCTTCTTCACCTAGGCATCCA 59.790 52.381 9.30 0.00 0.00 3.41
6017 6228 1.488393 AGCTTCTTCACCTAGGCATCC 59.512 52.381 9.30 0.00 0.00 3.51
6018 6229 2.559440 CAGCTTCTTCACCTAGGCATC 58.441 52.381 9.30 0.00 0.00 3.91
6021 6232 0.615850 ACCAGCTTCTTCACCTAGGC 59.384 55.000 9.30 0.00 0.00 3.93
6023 6234 1.677217 GCCACCAGCTTCTTCACCTAG 60.677 57.143 0.00 0.00 38.99 3.02
6024 6235 0.324943 GCCACCAGCTTCTTCACCTA 59.675 55.000 0.00 0.00 38.99 3.08
6026 6237 2.328099 CGCCACCAGCTTCTTCACC 61.328 63.158 0.00 0.00 40.39 4.02
6028 6239 1.004560 CTCGCCACCAGCTTCTTCA 60.005 57.895 0.00 0.00 40.39 3.02
6029 6240 0.107945 ATCTCGCCACCAGCTTCTTC 60.108 55.000 0.00 0.00 40.39 2.87
6030 6241 1.134670 GTATCTCGCCACCAGCTTCTT 60.135 52.381 0.00 0.00 40.39 2.52
6031 6242 0.461961 GTATCTCGCCACCAGCTTCT 59.538 55.000 0.00 0.00 40.39 2.85
6032 6243 0.461961 AGTATCTCGCCACCAGCTTC 59.538 55.000 0.00 0.00 40.39 3.86
6033 6244 0.905357 AAGTATCTCGCCACCAGCTT 59.095 50.000 0.00 0.00 40.39 3.74
6034 6245 0.905357 AAAGTATCTCGCCACCAGCT 59.095 50.000 0.00 0.00 40.39 4.24
6035 6246 1.291132 GAAAGTATCTCGCCACCAGC 58.709 55.000 0.00 0.00 38.52 4.85
6036 6247 1.482593 AGGAAAGTATCTCGCCACCAG 59.517 52.381 0.00 0.00 0.00 4.00
6038 6249 1.536284 CGAGGAAAGTATCTCGCCACC 60.536 57.143 0.00 0.00 44.68 4.61
6044 6255 3.978217 CGATTGAGCGAGGAAAGTATCTC 59.022 47.826 0.00 0.00 0.00 2.75
6045 6256 3.381908 ACGATTGAGCGAGGAAAGTATCT 59.618 43.478 0.00 0.00 34.83 1.98
6046 6257 3.707793 ACGATTGAGCGAGGAAAGTATC 58.292 45.455 0.00 0.00 34.83 2.24
6047 6258 3.130516 TGACGATTGAGCGAGGAAAGTAT 59.869 43.478 0.00 0.00 34.83 2.12
6048 6259 2.490509 TGACGATTGAGCGAGGAAAGTA 59.509 45.455 0.00 0.00 34.83 2.24
6049 6260 1.272490 TGACGATTGAGCGAGGAAAGT 59.728 47.619 0.00 0.00 34.83 2.66
6050 6261 1.656095 GTGACGATTGAGCGAGGAAAG 59.344 52.381 0.00 0.00 34.83 2.62
6053 6264 1.136774 CGTGACGATTGAGCGAGGA 59.863 57.895 0.00 0.00 34.83 3.71
6054 6265 0.248661 ATCGTGACGATTGAGCGAGG 60.249 55.000 15.60 0.00 44.59 4.63
6055 6266 2.384899 TATCGTGACGATTGAGCGAG 57.615 50.000 26.26 0.00 44.59 5.03
6056 6267 2.836479 TTATCGTGACGATTGAGCGA 57.164 45.000 26.26 3.56 44.59 4.93
6057 6268 3.899835 TTTTATCGTGACGATTGAGCG 57.100 42.857 26.26 0.00 44.59 5.03
6058 6269 5.204673 ACTTTTTATCGTGACGATTGAGC 57.795 39.130 26.26 0.00 44.59 4.26
6059 6270 6.887763 CGTAACTTTTTATCGTGACGATTGAG 59.112 38.462 26.26 18.57 44.59 3.02
6060 6271 6.668090 GCGTAACTTTTTATCGTGACGATTGA 60.668 38.462 26.26 12.34 44.59 2.57
6061 6272 5.443763 GCGTAACTTTTTATCGTGACGATTG 59.556 40.000 26.26 12.99 44.59 2.67
6062 6273 5.118971 TGCGTAACTTTTTATCGTGACGATT 59.881 36.000 26.26 9.32 44.59 3.34
6065 6276 4.296537 TGCGTAACTTTTTATCGTGACG 57.703 40.909 0.00 0.00 40.20 4.35
6067 6278 7.124347 AGAATTGCGTAACTTTTTATCGTGA 57.876 32.000 0.00 0.00 0.00 4.35
6068 6279 8.166706 AGTAGAATTGCGTAACTTTTTATCGTG 58.833 33.333 0.00 0.00 0.00 4.35
6075 6286 9.702494 ACTAGTAAGTAGAATTGCGTAACTTTT 57.298 29.630 0.00 0.00 32.84 2.27
6115 6326 4.385447 GCTTTTTATCGTGAATTGCAGCAA 59.615 37.500 11.07 11.07 0.00 3.91
6123 6334 3.697166 AGGGGTGCTTTTTATCGTGAAT 58.303 40.909 0.00 0.00 0.00 2.57
6125 6336 2.871096 AGGGGTGCTTTTTATCGTGA 57.129 45.000 0.00 0.00 0.00 4.35
6128 6339 2.943033 CCTGTAGGGGTGCTTTTTATCG 59.057 50.000 0.00 0.00 0.00 2.92
6130 6341 2.311841 AGCCTGTAGGGGTGCTTTTTAT 59.688 45.455 0.00 0.00 45.16 1.40
6131 6342 1.708551 AGCCTGTAGGGGTGCTTTTTA 59.291 47.619 0.00 0.00 45.16 1.52
6133 6344 1.004394 GTAGCCTGTAGGGGTGCTTTT 59.996 52.381 0.00 0.00 46.46 2.27
6134 6345 0.618981 GTAGCCTGTAGGGGTGCTTT 59.381 55.000 0.00 0.00 46.46 3.51
6143 6354 3.380004 CCTTGAGTCTCTGTAGCCTGTAG 59.620 52.174 0.65 0.00 0.00 2.74
6144 6355 3.357203 CCTTGAGTCTCTGTAGCCTGTA 58.643 50.000 0.65 0.00 0.00 2.74
6145 6356 2.175202 CCTTGAGTCTCTGTAGCCTGT 58.825 52.381 0.65 0.00 0.00 4.00
6146 6357 1.480137 CCCTTGAGTCTCTGTAGCCTG 59.520 57.143 0.65 0.00 0.00 4.85
6147 6358 1.359474 TCCCTTGAGTCTCTGTAGCCT 59.641 52.381 0.65 0.00 0.00 4.58
6148 6359 1.853963 TCCCTTGAGTCTCTGTAGCC 58.146 55.000 0.65 0.00 0.00 3.93
6149 6360 5.048083 CAGATATCCCTTGAGTCTCTGTAGC 60.048 48.000 0.00 0.00 0.00 3.58
6165 6376 2.890808 TCACAACGGAGCAGATATCC 57.109 50.000 0.00 0.00 0.00 2.59
6167 6378 4.406648 TTCATCACAACGGAGCAGATAT 57.593 40.909 0.00 0.00 0.00 1.63
6175 6386 3.942115 TGTCTGTTTTTCATCACAACGGA 59.058 39.130 0.00 0.00 34.16 4.69
6176 6387 4.285807 TGTCTGTTTTTCATCACAACGG 57.714 40.909 0.00 0.00 0.00 4.44
6177 6388 5.113975 CGATTGTCTGTTTTTCATCACAACG 59.886 40.000 0.00 0.00 34.06 4.10
6178 6389 5.399301 CCGATTGTCTGTTTTTCATCACAAC 59.601 40.000 0.00 0.00 34.06 3.32
6180 6391 4.556501 GCCGATTGTCTGTTTTTCATCACA 60.557 41.667 0.00 0.00 0.00 3.58
6181 6392 3.914364 GCCGATTGTCTGTTTTTCATCAC 59.086 43.478 0.00 0.00 0.00 3.06
6182 6393 3.820467 AGCCGATTGTCTGTTTTTCATCA 59.180 39.130 0.00 0.00 0.00 3.07
6183 6394 4.425577 AGCCGATTGTCTGTTTTTCATC 57.574 40.909 0.00 0.00 0.00 2.92
6184 6395 4.853924 AAGCCGATTGTCTGTTTTTCAT 57.146 36.364 0.00 0.00 0.00 2.57
6185 6396 4.320202 GCTAAGCCGATTGTCTGTTTTTCA 60.320 41.667 0.00 0.00 0.00 2.69
6186 6397 4.083271 AGCTAAGCCGATTGTCTGTTTTTC 60.083 41.667 0.00 0.00 0.00 2.29
6188 6399 3.412386 AGCTAAGCCGATTGTCTGTTTT 58.588 40.909 0.00 0.00 0.00 2.43
6189 6400 3.059352 AGCTAAGCCGATTGTCTGTTT 57.941 42.857 0.00 0.00 0.00 2.83
6191 6402 2.770164 AAGCTAAGCCGATTGTCTGT 57.230 45.000 0.00 0.00 0.00 3.41
6193 6404 5.648092 ACAAATTAAGCTAAGCCGATTGTCT 59.352 36.000 0.00 0.00 0.00 3.41
6195 6406 5.640732 CACAAATTAAGCTAAGCCGATTGT 58.359 37.500 0.00 0.00 0.00 2.71
6196 6407 4.500477 GCACAAATTAAGCTAAGCCGATTG 59.500 41.667 0.00 0.00 0.00 2.67
6197 6408 4.672409 GCACAAATTAAGCTAAGCCGATT 58.328 39.130 0.00 0.00 0.00 3.34
6199 6410 2.095213 CGCACAAATTAAGCTAAGCCGA 59.905 45.455 0.00 0.00 0.00 5.54
6200 6411 2.440501 CGCACAAATTAAGCTAAGCCG 58.559 47.619 0.00 0.00 0.00 5.52
6201 6412 2.159379 AGCGCACAAATTAAGCTAAGCC 60.159 45.455 11.47 0.00 36.28 4.35
6202 6413 2.848302 CAGCGCACAAATTAAGCTAAGC 59.152 45.455 11.47 0.00 36.28 3.09
6203 6414 4.093408 TCTCAGCGCACAAATTAAGCTAAG 59.907 41.667 11.47 0.00 36.28 2.18
6205 6416 3.595173 TCTCAGCGCACAAATTAAGCTA 58.405 40.909 11.47 0.00 36.28 3.32
6207 6418 2.476854 CCTCTCAGCGCACAAATTAAGC 60.477 50.000 11.47 0.00 0.00 3.09
6208 6419 2.096496 CCCTCTCAGCGCACAAATTAAG 59.904 50.000 11.47 0.00 0.00 1.85
6209 6420 2.083774 CCCTCTCAGCGCACAAATTAA 58.916 47.619 11.47 0.00 0.00 1.40
6210 6421 1.277842 TCCCTCTCAGCGCACAAATTA 59.722 47.619 11.47 0.00 0.00 1.40
6211 6422 0.036732 TCCCTCTCAGCGCACAAATT 59.963 50.000 11.47 0.00 0.00 1.82
6212 6423 0.392193 CTCCCTCTCAGCGCACAAAT 60.392 55.000 11.47 0.00 0.00 2.32
6213 6424 1.004560 CTCCCTCTCAGCGCACAAA 60.005 57.895 11.47 0.00 0.00 2.83
6214 6425 2.659016 CTCCCTCTCAGCGCACAA 59.341 61.111 11.47 0.00 0.00 3.33
6215 6426 4.074526 GCTCCCTCTCAGCGCACA 62.075 66.667 11.47 0.00 0.00 4.57
6216 6427 4.828925 GGCTCCCTCTCAGCGCAC 62.829 72.222 11.47 0.00 37.81 5.34
6218 6429 4.527583 CTGGCTCCCTCTCAGCGC 62.528 72.222 0.00 0.00 37.81 5.92
6221 6432 0.906756 TGTTCCTGGCTCCCTCTCAG 60.907 60.000 0.00 0.00 0.00 3.35
6222 6433 0.252881 ATGTTCCTGGCTCCCTCTCA 60.253 55.000 0.00 0.00 0.00 3.27
6274 6666 1.416813 GCTCGCCGTTGAGACTGATG 61.417 60.000 5.42 0.00 38.28 3.07
6276 6668 2.258591 GCTCGCCGTTGAGACTGA 59.741 61.111 5.42 0.00 38.28 3.41
6285 6677 6.373774 GGTATATATATATAGTGGCTCGCCGT 59.626 42.308 11.94 0.00 39.42 5.68
6292 6684 8.521176 CCGGTCTTGGTATATATATATAGTGGC 58.479 40.741 11.94 5.43 0.00 5.01
6297 6689 8.450434 TGAGGCCGGTCTTGGTATATATATATA 58.550 37.037 11.49 8.16 0.00 0.86
6298 6690 7.302948 TGAGGCCGGTCTTGGTATATATATAT 58.697 38.462 11.49 10.10 0.00 0.86
6369 6770 3.181510 GGCCCGCATTATAAAATAGAGCG 60.182 47.826 0.00 0.00 42.93 5.03
6378 6779 4.042311 TGGAAATAGAGGCCCGCATTATAA 59.958 41.667 0.00 0.00 0.00 0.98
6385 6789 0.398318 AGATGGAAATAGAGGCCCGC 59.602 55.000 0.00 0.00 0.00 6.13
6388 6792 2.947127 AGCAGATGGAAATAGAGGCC 57.053 50.000 0.00 0.00 0.00 5.19
6395 6799 7.284944 CCATAGAAGAAGAAAGCAGATGGAAAT 59.715 37.037 0.00 0.00 34.48 2.17
6396 6800 6.600822 CCATAGAAGAAGAAAGCAGATGGAAA 59.399 38.462 0.00 0.00 34.48 3.13
6403 6807 5.976458 ACTCTCCATAGAAGAAGAAAGCAG 58.024 41.667 0.00 0.00 0.00 4.24
6405 6809 5.971763 TGACTCTCCATAGAAGAAGAAAGC 58.028 41.667 0.00 0.00 0.00 3.51
6406 6810 6.529829 CGTTGACTCTCCATAGAAGAAGAAAG 59.470 42.308 0.00 0.00 0.00 2.62
6418 6822 1.971357 AGAACACCGTTGACTCTCCAT 59.029 47.619 0.00 0.00 0.00 3.41
6422 6826 3.800506 CGTTTAAGAACACCGTTGACTCT 59.199 43.478 0.00 0.00 35.44 3.24
6430 6837 5.399604 GGATTATCCGTTTAAGAACACCG 57.600 43.478 0.00 0.00 35.44 4.94
6451 6858 9.277565 CATATGTTTGTTTATTTCAGAAGACGG 57.722 33.333 0.00 0.00 0.00 4.79
6460 6867 8.995906 GCTCGTACACATATGTTTGTTTATTTC 58.004 33.333 5.37 0.00 40.48 2.17
6509 6916 3.272581 GTTGGCCCGTTAGTTAAGCATA 58.727 45.455 0.00 0.00 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.