Multiple sequence alignment - TraesCS1A01G376100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G376100 chr1A 100.000 5757 0 0 1 5757 550446793 550441037 0.000000e+00 10632.0
1 TraesCS1A01G376100 chr1A 81.828 930 104 31 2764 3664 560844107 560845000 0.000000e+00 721.0
2 TraesCS1A01G376100 chr1A 76.976 582 80 35 4472 5033 560850089 560850636 3.400000e-72 283.0
3 TraesCS1A01G376100 chr1A 77.490 502 57 34 3935 4404 560845113 560845590 3.440000e-62 250.0
4 TraesCS1A01G376100 chr1A 94.030 67 4 0 307 373 550446441 550446375 1.020000e-17 102.0
5 TraesCS1A01G376100 chr1A 94.030 67 4 0 353 419 550446487 550446421 1.020000e-17 102.0
6 TraesCS1A01G376100 chr1B 94.019 3561 128 39 169 3685 628055043 628051524 0.000000e+00 5317.0
7 TraesCS1A01G376100 chr1B 92.801 764 48 3 4356 5119 628050650 628049894 0.000000e+00 1099.0
8 TraesCS1A01G376100 chr1B 88.393 448 25 15 3798 4226 628051525 628051086 1.110000e-141 514.0
9 TraesCS1A01G376100 chr1B 88.131 396 35 10 4886 5278 628116126 628115740 1.460000e-125 460.0
10 TraesCS1A01G376100 chr1B 94.531 128 6 1 1 127 572209661 572209788 4.550000e-46 196.0
11 TraesCS1A01G376100 chr1B 92.969 128 8 1 1 127 656450466 656450339 9.850000e-43 185.0
12 TraesCS1A01G376100 chr1B 92.308 130 9 1 3677 3805 654278681 654278552 3.540000e-42 183.0
13 TraesCS1A01G376100 chr1B 89.916 119 11 1 4230 4347 628050987 628050869 9.990000e-33 152.0
14 TraesCS1A01G376100 chr1B 81.081 185 17 6 5566 5746 628048840 628048670 1.300000e-26 132.0
15 TraesCS1A01G376100 chr1B 100.000 36 0 0 4229 4264 628050689 628050654 3.720000e-07 67.6
16 TraesCS1A01G376100 chr1D 94.346 3219 107 30 508 3685 457976574 457973390 0.000000e+00 4867.0
17 TraesCS1A01G376100 chr1D 91.451 1661 95 28 3798 5434 457973391 457971754 0.000000e+00 2237.0
18 TraesCS1A01G376100 chr1D 92.083 240 9 3 261 490 457977164 457976925 4.300000e-86 329.0
19 TraesCS1A01G376100 chr2B 91.829 2876 162 43 857 3682 23110294 23107442 0.000000e+00 3941.0
20 TraesCS1A01G376100 chr2B 88.294 1794 162 35 1158 2922 360972700 360974474 0.000000e+00 2106.0
21 TraesCS1A01G376100 chr2B 80.466 1116 144 37 4229 5287 23106830 23105732 0.000000e+00 785.0
22 TraesCS1A01G376100 chr2B 75.150 1163 166 73 3843 4934 360979004 360980114 3.190000e-117 433.0
23 TraesCS1A01G376100 chr2B 84.735 452 35 22 3797 4225 23107434 23106994 6.900000e-114 422.0
24 TraesCS1A01G376100 chr2B 86.531 245 28 2 2938 3182 360978272 360978511 1.230000e-66 265.0
25 TraesCS1A01G376100 chr2B 85.039 254 28 6 904 1150 360971682 360971932 3.440000e-62 250.0
26 TraesCS1A01G376100 chr2B 80.451 266 40 7 439 704 23110708 23110455 5.890000e-45 193.0
27 TraesCS1A01G376100 chr2A 87.577 1465 121 29 1756 3182 387645893 387644452 0.000000e+00 1640.0
28 TraesCS1A01G376100 chr2A 87.373 887 91 14 904 1778 387646776 387645899 0.000000e+00 998.0
29 TraesCS1A01G376100 chr2A 75.669 1159 154 75 3843 4934 387643960 387642863 1.460000e-125 460.0
30 TraesCS1A01G376100 chr2D 84.640 1237 134 35 904 2102 307028303 307027085 0.000000e+00 1181.0
31 TraesCS1A01G376100 chr2D 90.000 420 33 3 2764 3182 307027069 307026658 8.490000e-148 534.0
32 TraesCS1A01G376100 chr2D 75.648 1158 161 71 3843 4934 307026165 307025063 1.130000e-126 464.0
33 TraesCS1A01G376100 chr2D 93.600 125 6 1 1 125 480562957 480562835 9.850000e-43 185.0
34 TraesCS1A01G376100 chr5D 93.893 131 8 0 3676 3806 138565548 138565678 1.270000e-46 198.0
35 TraesCS1A01G376100 chr5D 93.130 131 9 0 3676 3806 312934224 312934354 5.890000e-45 193.0
36 TraesCS1A01G376100 chr5B 95.902 122 5 0 3679 3800 659171478 659171599 1.270000e-46 198.0
37 TraesCS1A01G376100 chr5B 94.309 123 7 0 3682 3804 531648772 531648894 7.620000e-44 189.0
38 TraesCS1A01G376100 chr3A 97.414 116 3 0 3684 3799 600026646 600026531 1.270000e-46 198.0
39 TraesCS1A01G376100 chr3A 95.082 122 6 0 1 122 435816532 435816653 5.890000e-45 193.0
40 TraesCS1A01G376100 chr3A 93.600 125 8 0 3676 3800 741036551 741036427 2.740000e-43 187.0
41 TraesCS1A01G376100 chr5A 94.574 129 4 3 3682 3807 115018754 115018626 4.550000e-46 196.0
42 TraesCS1A01G376100 chr7D 94.400 125 7 0 1 125 62683323 62683447 5.890000e-45 193.0
43 TraesCS1A01G376100 chr6B 95.798 119 5 0 3683 3801 141070084 141070202 5.890000e-45 193.0
44 TraesCS1A01G376100 chr6B 92.913 127 9 0 1 127 8719541 8719667 9.850000e-43 185.0
45 TraesCS1A01G376100 chrUn 92.913 127 9 0 1 127 200756107 200756233 9.850000e-43 185.0
46 TraesCS1A01G376100 chrUn 92.913 127 9 0 1 127 391166789 391166915 9.850000e-43 185.0
47 TraesCS1A01G376100 chr7A 93.548 124 8 0 1 124 464248716 464248593 9.850000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G376100 chr1A 550441037 550446793 5756 True 3612.000000 10632 96.020000 1 5757 3 chr1A.!!$R1 5756
1 TraesCS1A01G376100 chr1A 560844107 560845590 1483 False 485.500000 721 79.659000 2764 4404 2 chr1A.!!$F2 1640
2 TraesCS1A01G376100 chr1A 560850089 560850636 547 False 283.000000 283 76.976000 4472 5033 1 chr1A.!!$F1 561
3 TraesCS1A01G376100 chr1B 628048670 628055043 6373 True 1213.600000 5317 91.035000 169 5746 6 chr1B.!!$R4 5577
4 TraesCS1A01G376100 chr1D 457971754 457977164 5410 True 2477.666667 4867 92.626667 261 5434 3 chr1D.!!$R1 5173
5 TraesCS1A01G376100 chr2B 23105732 23110708 4976 True 1335.250000 3941 84.370250 439 5287 4 chr2B.!!$R1 4848
6 TraesCS1A01G376100 chr2B 360971682 360980114 8432 False 763.500000 2106 83.753500 904 4934 4 chr2B.!!$F1 4030
7 TraesCS1A01G376100 chr2A 387642863 387646776 3913 True 1032.666667 1640 83.539667 904 4934 3 chr2A.!!$R1 4030
8 TraesCS1A01G376100 chr2D 307025063 307028303 3240 True 726.333333 1181 83.429333 904 4934 3 chr2D.!!$R2 4030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 173 0.185175 AACAACACCACCCCTCCTTC 59.815 55.0 0.00 0.0 0.00 3.46 F
228 229 0.335361 TCCCCTCGCCTATATCTCCC 59.665 60.0 0.00 0.0 0.00 4.30 F
233 234 0.697079 TCGCCTATATCTCCCGACCT 59.303 55.0 0.00 0.0 0.00 3.85 F
776 1139 0.823356 TGGAGTTTGGACAGGCTTGC 60.823 55.0 0.00 0.0 0.00 4.01 F
1749 2950 1.180029 TCCGTCGGGACCTTTCTTAG 58.820 55.0 12.29 0.0 37.43 2.18 F
3624 8822 0.814010 AACAAGAACTGGTTCGCGCT 60.814 50.0 5.56 0.0 43.97 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1085 1510 2.489329 CTGTGAAGTGGCACCATTTAGG 59.511 50.000 15.27 0.0 45.67 2.69 R
2003 3273 2.682856 TCCTTCAACTTTCTGCACACAC 59.317 45.455 0.00 0.0 0.00 3.82 R
2354 3624 9.045223 GCTTCAATTGTTTTTACCAAATTCTCT 57.955 29.630 5.13 0.0 0.00 3.10 R
2372 3642 2.490903 GGCTCTGTCACATGCTTCAATT 59.509 45.455 0.00 0.0 0.00 2.32 R
3776 8981 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.0 44.66 2.12 R
5148 11104 0.109412 GCAGCACATGAAGCAGAACC 60.109 55.000 15.23 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 7.285783 CAAAATGTTGCATGACTAAGGATTG 57.714 36.000 0.00 0.00 0.00 2.67
28 29 5.587388 AATGTTGCATGACTAAGGATTGG 57.413 39.130 0.00 0.00 0.00 3.16
29 30 4.299586 TGTTGCATGACTAAGGATTGGA 57.700 40.909 0.00 0.00 0.00 3.53
30 31 4.858850 TGTTGCATGACTAAGGATTGGAT 58.141 39.130 0.00 0.00 0.00 3.41
31 32 6.000246 TGTTGCATGACTAAGGATTGGATA 58.000 37.500 0.00 0.00 0.00 2.59
32 33 6.057533 TGTTGCATGACTAAGGATTGGATAG 58.942 40.000 0.00 0.00 0.00 2.08
33 34 6.126796 TGTTGCATGACTAAGGATTGGATAGA 60.127 38.462 0.00 0.00 0.00 1.98
34 35 6.106648 TGCATGACTAAGGATTGGATAGAG 57.893 41.667 0.00 0.00 0.00 2.43
35 36 5.840693 TGCATGACTAAGGATTGGATAGAGA 59.159 40.000 0.00 0.00 0.00 3.10
36 37 6.327365 TGCATGACTAAGGATTGGATAGAGAA 59.673 38.462 0.00 0.00 0.00 2.87
37 38 6.873076 GCATGACTAAGGATTGGATAGAGAAG 59.127 42.308 0.00 0.00 0.00 2.85
38 39 6.412362 TGACTAAGGATTGGATAGAGAAGC 57.588 41.667 0.00 0.00 0.00 3.86
39 40 5.305644 TGACTAAGGATTGGATAGAGAAGCC 59.694 44.000 0.00 0.00 0.00 4.35
40 41 4.595350 ACTAAGGATTGGATAGAGAAGCCC 59.405 45.833 0.00 0.00 0.00 5.19
41 42 3.066208 AGGATTGGATAGAGAAGCCCA 57.934 47.619 0.00 0.00 0.00 5.36
42 43 3.606972 AGGATTGGATAGAGAAGCCCAT 58.393 45.455 0.00 0.00 0.00 4.00
43 44 3.330110 AGGATTGGATAGAGAAGCCCATG 59.670 47.826 0.00 0.00 0.00 3.66
44 45 3.328931 GGATTGGATAGAGAAGCCCATGA 59.671 47.826 0.00 0.00 0.00 3.07
45 46 4.202503 GGATTGGATAGAGAAGCCCATGAA 60.203 45.833 0.00 0.00 0.00 2.57
46 47 4.860802 TTGGATAGAGAAGCCCATGAAA 57.139 40.909 0.00 0.00 0.00 2.69
47 48 4.860802 TGGATAGAGAAGCCCATGAAAA 57.139 40.909 0.00 0.00 0.00 2.29
48 49 5.191727 TGGATAGAGAAGCCCATGAAAAA 57.808 39.130 0.00 0.00 0.00 1.94
49 50 5.769835 TGGATAGAGAAGCCCATGAAAAAT 58.230 37.500 0.00 0.00 0.00 1.82
50 51 5.829924 TGGATAGAGAAGCCCATGAAAAATC 59.170 40.000 0.00 0.00 0.00 2.17
51 52 6.067350 GGATAGAGAAGCCCATGAAAAATCT 58.933 40.000 0.00 0.00 0.00 2.40
52 53 6.548993 GGATAGAGAAGCCCATGAAAAATCTT 59.451 38.462 0.00 0.00 0.00 2.40
53 54 5.656213 AGAGAAGCCCATGAAAAATCTTG 57.344 39.130 0.00 0.00 0.00 3.02
54 55 5.082425 AGAGAAGCCCATGAAAAATCTTGT 58.918 37.500 0.00 0.00 0.00 3.16
55 56 6.248433 AGAGAAGCCCATGAAAAATCTTGTA 58.752 36.000 0.00 0.00 0.00 2.41
56 57 6.721208 AGAGAAGCCCATGAAAAATCTTGTAA 59.279 34.615 0.00 0.00 0.00 2.41
57 58 6.691508 AGAAGCCCATGAAAAATCTTGTAAC 58.308 36.000 0.00 0.00 0.00 2.50
58 59 6.494835 AGAAGCCCATGAAAAATCTTGTAACT 59.505 34.615 0.00 0.00 0.00 2.24
59 60 6.272822 AGCCCATGAAAAATCTTGTAACTC 57.727 37.500 0.00 0.00 0.00 3.01
60 61 6.012745 AGCCCATGAAAAATCTTGTAACTCT 58.987 36.000 0.00 0.00 0.00 3.24
61 62 6.494835 AGCCCATGAAAAATCTTGTAACTCTT 59.505 34.615 0.00 0.00 0.00 2.85
62 63 6.808704 GCCCATGAAAAATCTTGTAACTCTTC 59.191 38.462 0.00 0.00 0.00 2.87
63 64 7.309438 GCCCATGAAAAATCTTGTAACTCTTCT 60.309 37.037 0.00 0.00 0.00 2.85
64 65 8.025445 CCCATGAAAAATCTTGTAACTCTTCTG 58.975 37.037 0.00 0.00 0.00 3.02
65 66 8.786898 CCATGAAAAATCTTGTAACTCTTCTGA 58.213 33.333 0.00 0.00 0.00 3.27
71 72 8.918961 AAATCTTGTAACTCTTCTGATAGACG 57.081 34.615 0.00 0.00 0.00 4.18
72 73 7.867305 ATCTTGTAACTCTTCTGATAGACGA 57.133 36.000 0.00 0.00 0.00 4.20
73 74 7.867305 TCTTGTAACTCTTCTGATAGACGAT 57.133 36.000 0.00 0.00 0.00 3.73
74 75 7.698628 TCTTGTAACTCTTCTGATAGACGATG 58.301 38.462 0.00 0.00 0.00 3.84
75 76 7.337184 TCTTGTAACTCTTCTGATAGACGATGT 59.663 37.037 0.00 0.00 0.00 3.06
76 77 8.502105 TTGTAACTCTTCTGATAGACGATGTA 57.498 34.615 0.00 0.00 0.00 2.29
77 78 8.502105 TGTAACTCTTCTGATAGACGATGTAA 57.498 34.615 0.00 0.00 0.00 2.41
78 79 8.396390 TGTAACTCTTCTGATAGACGATGTAAC 58.604 37.037 0.00 0.00 0.00 2.50
79 80 7.633193 AACTCTTCTGATAGACGATGTAACT 57.367 36.000 0.00 0.00 0.00 2.24
80 81 8.734218 AACTCTTCTGATAGACGATGTAACTA 57.266 34.615 0.00 0.00 0.00 2.24
81 82 8.911918 ACTCTTCTGATAGACGATGTAACTAT 57.088 34.615 0.00 0.00 0.00 2.12
82 83 9.344772 ACTCTTCTGATAGACGATGTAACTATT 57.655 33.333 0.00 0.00 0.00 1.73
169 170 1.491668 AAAAACAACACCACCCCTCC 58.508 50.000 0.00 0.00 0.00 4.30
170 171 0.634465 AAAACAACACCACCCCTCCT 59.366 50.000 0.00 0.00 0.00 3.69
171 172 0.634465 AAACAACACCACCCCTCCTT 59.366 50.000 0.00 0.00 0.00 3.36
172 173 0.185175 AACAACACCACCCCTCCTTC 59.815 55.000 0.00 0.00 0.00 3.46
173 174 0.697854 ACAACACCACCCCTCCTTCT 60.698 55.000 0.00 0.00 0.00 2.85
189 190 5.110814 TCCTTCTTGTCTGTCAAAAGGAA 57.889 39.130 18.60 7.63 39.34 3.36
190 191 5.505780 TCCTTCTTGTCTGTCAAAAGGAAA 58.494 37.500 18.60 7.04 39.34 3.13
191 192 5.949354 TCCTTCTTGTCTGTCAAAAGGAAAA 59.051 36.000 18.60 6.61 39.34 2.29
192 193 6.435904 TCCTTCTTGTCTGTCAAAAGGAAAAA 59.564 34.615 18.60 6.39 39.34 1.94
222 223 2.859422 CCCCTCCCCTCGCCTATA 59.141 66.667 0.00 0.00 0.00 1.31
227 228 1.686741 CCTCCCCTCGCCTATATCTCC 60.687 61.905 0.00 0.00 0.00 3.71
228 229 0.335361 TCCCCTCGCCTATATCTCCC 59.665 60.000 0.00 0.00 0.00 4.30
232 233 1.096416 CTCGCCTATATCTCCCGACC 58.904 60.000 0.00 0.00 0.00 4.79
233 234 0.697079 TCGCCTATATCTCCCGACCT 59.303 55.000 0.00 0.00 0.00 3.85
234 235 1.096416 CGCCTATATCTCCCGACCTC 58.904 60.000 0.00 0.00 0.00 3.85
235 236 1.096416 GCCTATATCTCCCGACCTCG 58.904 60.000 0.00 0.00 39.44 4.63
236 237 1.096416 CCTATATCTCCCGACCTCGC 58.904 60.000 0.00 0.00 38.18 5.03
237 238 1.096416 CTATATCTCCCGACCTCGCC 58.904 60.000 0.00 0.00 38.18 5.54
239 240 3.687509 TATATCTCCCGACCTCGCCCC 62.688 61.905 0.00 0.00 38.18 5.80
503 532 4.761304 TCTCCTCCCCCTCCCCCT 62.761 72.222 0.00 0.00 0.00 4.79
512 874 2.040359 CCTCCCCCTCCCTCCTTC 60.040 72.222 0.00 0.00 0.00 3.46
513 875 2.040359 CTCCCCCTCCCTCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
535 897 1.206371 CCCTAGGGTTTCGTTGTCGAT 59.794 52.381 20.88 0.00 45.65 3.59
776 1139 0.823356 TGGAGTTTGGACAGGCTTGC 60.823 55.000 0.00 0.00 0.00 4.01
900 1307 4.712337 TGTAGTTTTTGCCTTTTTGGGAGA 59.288 37.500 0.00 0.00 37.50 3.71
902 1309 3.774766 AGTTTTTGCCTTTTTGGGAGACT 59.225 39.130 0.00 0.00 37.50 3.24
923 1331 6.495872 AGACTTATCCGGGCACTACATATTTA 59.504 38.462 0.00 0.00 0.00 1.40
941 1351 9.407380 ACATATTTATTGTGATTGAGCTAACCA 57.593 29.630 0.00 0.00 0.00 3.67
947 1360 5.426689 TGTGATTGAGCTAACCATCTTCT 57.573 39.130 0.00 0.00 0.00 2.85
948 1361 5.809001 TGTGATTGAGCTAACCATCTTCTT 58.191 37.500 0.00 0.00 0.00 2.52
1016 1433 4.813161 CGAGATAATGGTGAGTTCATTGCT 59.187 41.667 0.00 0.00 36.40 3.91
1046 1467 6.826668 TGTTAAGCAGCTAGGCAATCTTATA 58.173 36.000 0.00 0.00 35.83 0.98
1085 1510 2.884827 GCATTGGTCTCATGCCTTTTC 58.115 47.619 0.00 0.00 35.44 2.29
1414 2599 4.152223 TGCAAGTATGTGATCAAACTCGTG 59.848 41.667 0.00 0.00 0.00 4.35
1733 2934 1.473278 GACCAACCAGAGACTAGTCCG 59.527 57.143 19.38 8.28 0.00 4.79
1749 2950 1.180029 TCCGTCGGGACCTTTCTTAG 58.820 55.000 12.29 0.00 37.43 2.18
1954 3209 7.201609 CGCTGTTCATCTGTATTTTAGCCTTAA 60.202 37.037 0.00 0.00 0.00 1.85
2354 3624 2.057922 AGTGGGAAGCCTCTTTCTCAA 58.942 47.619 0.00 0.00 39.16 3.02
2372 3642 9.801873 CTTTCTCAAGAGAATTTGGTAAAAACA 57.198 29.630 12.84 0.00 45.78 2.83
2660 3932 2.234908 AGCCGAAGTATTTCAGAGCACT 59.765 45.455 0.00 0.00 32.67 4.40
2981 8044 8.055279 TCATGCTTATTTTTCCCTTGAACTAG 57.945 34.615 0.00 0.00 0.00 2.57
3243 8420 4.393062 CACATCTTGTTATCACCAGGTGAC 59.607 45.833 25.35 13.43 45.65 3.67
3456 8640 1.533756 CGCAATGGAGGTTTTATGCCG 60.534 52.381 0.00 0.00 0.00 5.69
3622 8820 0.934496 TCAACAAGAACTGGTTCGCG 59.066 50.000 0.00 0.00 43.97 5.87
3624 8822 0.814010 AACAAGAACTGGTTCGCGCT 60.814 50.000 5.56 0.00 43.97 5.92
3634 8832 1.131420 GTTCGCGCTGCTTTCTCTG 59.869 57.895 5.56 0.00 0.00 3.35
3682 8887 4.103153 TCCCACTTCCCAGAGCTTAATATG 59.897 45.833 0.00 0.00 0.00 1.78
3684 8889 5.071788 CCCACTTCCCAGAGCTTAATATGTA 59.928 44.000 0.00 0.00 0.00 2.29
3685 8890 5.992217 CCACTTCCCAGAGCTTAATATGTAC 59.008 44.000 0.00 0.00 0.00 2.90
3686 8891 6.183361 CCACTTCCCAGAGCTTAATATGTACT 60.183 42.308 0.00 0.00 0.00 2.73
3687 8892 6.926272 CACTTCCCAGAGCTTAATATGTACTC 59.074 42.308 0.00 0.00 0.00 2.59
3688 8893 6.042208 ACTTCCCAGAGCTTAATATGTACTCC 59.958 42.308 0.00 0.00 0.00 3.85
3689 8894 4.838986 TCCCAGAGCTTAATATGTACTCCC 59.161 45.833 0.00 0.00 0.00 4.30
3690 8895 4.841246 CCCAGAGCTTAATATGTACTCCCT 59.159 45.833 0.00 0.00 0.00 4.20
3691 8896 5.046950 CCCAGAGCTTAATATGTACTCCCTC 60.047 48.000 0.00 0.00 0.00 4.30
3692 8897 5.046950 CCAGAGCTTAATATGTACTCCCTCC 60.047 48.000 0.00 0.00 0.00 4.30
3693 8898 5.540337 CAGAGCTTAATATGTACTCCCTCCA 59.460 44.000 0.00 0.00 0.00 3.86
3694 8899 6.212388 CAGAGCTTAATATGTACTCCCTCCAT 59.788 42.308 0.00 0.00 0.00 3.41
3695 8900 6.439058 AGAGCTTAATATGTACTCCCTCCATC 59.561 42.308 0.00 0.00 0.00 3.51
3696 8901 5.485708 AGCTTAATATGTACTCCCTCCATCC 59.514 44.000 0.00 0.00 0.00 3.51
3697 8902 5.248477 GCTTAATATGTACTCCCTCCATCCA 59.752 44.000 0.00 0.00 0.00 3.41
3698 8903 6.575254 GCTTAATATGTACTCCCTCCATCCAG 60.575 46.154 0.00 0.00 0.00 3.86
3699 8904 4.767000 ATATGTACTCCCTCCATCCAGA 57.233 45.455 0.00 0.00 0.00 3.86
3700 8905 2.940514 TGTACTCCCTCCATCCAGAA 57.059 50.000 0.00 0.00 0.00 3.02
3701 8906 3.199442 TGTACTCCCTCCATCCAGAAA 57.801 47.619 0.00 0.00 0.00 2.52
3702 8907 3.736094 TGTACTCCCTCCATCCAGAAAT 58.264 45.455 0.00 0.00 0.00 2.17
3703 8908 4.890988 TGTACTCCCTCCATCCAGAAATA 58.109 43.478 0.00 0.00 0.00 1.40
3704 8909 4.654262 TGTACTCCCTCCATCCAGAAATAC 59.346 45.833 0.00 0.00 0.00 1.89
3705 8910 4.014273 ACTCCCTCCATCCAGAAATACT 57.986 45.455 0.00 0.00 0.00 2.12
3706 8911 4.375313 ACTCCCTCCATCCAGAAATACTT 58.625 43.478 0.00 0.00 0.00 2.24
3707 8912 4.164988 ACTCCCTCCATCCAGAAATACTTG 59.835 45.833 0.00 0.00 0.00 3.16
3708 8913 4.111577 TCCCTCCATCCAGAAATACTTGT 58.888 43.478 0.00 0.00 0.00 3.16
3709 8914 4.164221 TCCCTCCATCCAGAAATACTTGTC 59.836 45.833 0.00 0.00 0.00 3.18
3710 8915 4.455606 CCTCCATCCAGAAATACTTGTCC 58.544 47.826 0.00 0.00 0.00 4.02
3711 8916 4.164988 CCTCCATCCAGAAATACTTGTCCT 59.835 45.833 0.00 0.00 0.00 3.85
3712 8917 5.366768 CCTCCATCCAGAAATACTTGTCCTA 59.633 44.000 0.00 0.00 0.00 2.94
3713 8918 6.463614 CCTCCATCCAGAAATACTTGTCCTAG 60.464 46.154 0.00 0.00 0.00 3.02
3714 8919 6.202331 TCCATCCAGAAATACTTGTCCTAGA 58.798 40.000 0.00 0.00 0.00 2.43
3715 8920 6.672218 TCCATCCAGAAATACTTGTCCTAGAA 59.328 38.462 0.00 0.00 0.00 2.10
3716 8921 7.182026 TCCATCCAGAAATACTTGTCCTAGAAA 59.818 37.037 0.00 0.00 0.00 2.52
3717 8922 7.995488 CCATCCAGAAATACTTGTCCTAGAAAT 59.005 37.037 0.00 0.00 0.00 2.17
3718 8923 8.834465 CATCCAGAAATACTTGTCCTAGAAATG 58.166 37.037 0.00 0.00 0.00 2.32
3719 8924 8.146053 TCCAGAAATACTTGTCCTAGAAATGA 57.854 34.615 0.00 0.00 0.00 2.57
3720 8925 8.602424 TCCAGAAATACTTGTCCTAGAAATGAA 58.398 33.333 0.00 0.00 0.00 2.57
3721 8926 9.401058 CCAGAAATACTTGTCCTAGAAATGAAT 57.599 33.333 0.00 0.00 0.00 2.57
3723 8928 9.965902 AGAAATACTTGTCCTAGAAATGAATGT 57.034 29.630 0.00 0.00 0.00 2.71
3732 8937 9.647918 TGTCCTAGAAATGAATGTATCTAGACT 57.352 33.333 9.60 0.00 42.48 3.24
3774 8979 8.697507 ACATCCATTTTATCCATTTCTAGGAC 57.302 34.615 0.00 0.00 38.13 3.85
3775 8980 8.281531 ACATCCATTTTATCCATTTCTAGGACA 58.718 33.333 0.00 0.00 38.13 4.02
3776 8981 9.135189 CATCCATTTTATCCATTTCTAGGACAA 57.865 33.333 0.00 0.00 38.13 3.18
3777 8982 8.752005 TCCATTTTATCCATTTCTAGGACAAG 57.248 34.615 0.00 0.00 38.13 3.16
3778 8983 8.336235 TCCATTTTATCCATTTCTAGGACAAGT 58.664 33.333 0.00 0.00 38.13 3.16
3779 8984 9.627123 CCATTTTATCCATTTCTAGGACAAGTA 57.373 33.333 0.00 0.00 38.13 2.24
3784 8989 9.847224 TTATCCATTTCTAGGACAAGTATTTCC 57.153 33.333 0.00 0.00 38.13 3.13
3785 8990 6.346096 TCCATTTCTAGGACAAGTATTTCCG 58.654 40.000 0.00 0.00 36.95 4.30
3786 8991 5.527582 CCATTTCTAGGACAAGTATTTCCGG 59.472 44.000 0.00 0.00 36.95 5.14
3787 8992 6.346096 CATTTCTAGGACAAGTATTTCCGGA 58.654 40.000 0.00 0.00 36.95 5.14
3788 8993 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
3789 8994 2.667473 AGGACAAGTATTTCCGGACG 57.333 50.000 1.83 0.00 36.95 4.79
3790 8995 1.206371 AGGACAAGTATTTCCGGACGG 59.794 52.381 1.83 3.96 36.95 4.79
3791 8996 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
3792 8997 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
3793 8998 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
3794 8999 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
3795 9000 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3846 9064 8.725148 CCTTATATCTATGTTTCCTGCACATTC 58.275 37.037 0.00 0.00 36.28 2.67
3858 9076 0.310543 GCACATTCAGGTGTTTGCGA 59.689 50.000 0.00 0.00 40.89 5.10
3901 9120 1.686355 TTTGCACCCTGTACCAGTTG 58.314 50.000 0.00 0.00 0.00 3.16
3991 9229 4.641989 ACCTCTTTTGTGATATCATGCACC 59.358 41.667 9.02 0.00 34.19 5.01
3992 9230 4.885907 CCTCTTTTGTGATATCATGCACCT 59.114 41.667 9.02 0.00 34.19 4.00
3993 9231 5.220989 CCTCTTTTGTGATATCATGCACCTG 60.221 44.000 9.02 0.00 34.19 4.00
3994 9232 4.096833 TCTTTTGTGATATCATGCACCTGC 59.903 41.667 9.02 0.00 42.50 4.85
4013 9272 4.383880 CCTGCAAATCTCTCTCTGATTCCA 60.384 45.833 0.00 0.00 33.54 3.53
4014 9273 5.369409 TGCAAATCTCTCTCTGATTCCAT 57.631 39.130 0.00 0.00 33.54 3.41
4015 9274 6.464039 CCTGCAAATCTCTCTCTGATTCCATA 60.464 42.308 0.00 0.00 33.54 2.74
4227 9767 8.827677 AGGTCGCTATGTAATTTTTATCTTGTC 58.172 33.333 0.00 0.00 0.00 3.18
4378 10145 6.488006 AGTCATCATGGACAATATAGTTTGCC 59.512 38.462 5.12 0.00 40.29 4.52
4406 10173 5.663456 TGTTAGTTTTACCTATGCTACCGG 58.337 41.667 0.00 0.00 0.00 5.28
4499 10287 8.924303 ACATTTAGCACCTTGTGTATAGATAGA 58.076 33.333 0.00 0.00 35.75 1.98
4500 10288 9.935241 CATTTAGCACCTTGTGTATAGATAGAT 57.065 33.333 0.00 0.00 35.75 1.98
4776 10600 1.065854 ACCGAGCTTGGAATCTGAAGG 60.066 52.381 27.65 0.00 0.00 3.46
4777 10601 1.012841 CGAGCTTGGAATCTGAAGGC 58.987 55.000 0.00 0.00 0.00 4.35
4778 10602 1.676916 CGAGCTTGGAATCTGAAGGCA 60.677 52.381 0.00 0.00 0.00 4.75
4785 10609 3.575805 TGGAATCTGAAGGCAAAAAGGT 58.424 40.909 0.00 0.00 0.00 3.50
4903 10740 4.874966 ACAGAATCAGCTTGTATTCTCAGC 59.125 41.667 11.15 0.00 39.79 4.26
4955 10801 0.790207 AAGCGCACTACAACATCACG 59.210 50.000 11.47 0.00 0.00 4.35
5003 10849 1.385528 TACCTATGCTTCGAGCGTCA 58.614 50.000 5.08 0.00 46.26 4.35
5010 10860 1.852280 TGCTTCGAGCGTCAATAATCG 59.148 47.619 3.08 0.00 46.26 3.34
5063 10914 3.498774 ACTGTCTTGCCTGAAACATCT 57.501 42.857 0.00 0.00 0.00 2.90
5122 11078 3.589988 AGCTTTGAATGAGTACTCGTGG 58.410 45.455 18.26 7.82 0.00 4.94
5126 11082 5.614887 GCTTTGAATGAGTACTCGTGGTTTC 60.615 44.000 18.26 12.10 0.00 2.78
5161 11117 4.713824 ATGATTGTGGTTCTGCTTCATG 57.286 40.909 0.00 0.00 0.00 3.07
5192 11153 3.014623 GTTTGGTAATGGCAGGTCCTAC 58.985 50.000 0.00 0.00 35.26 3.18
5229 11194 7.384439 TGAGATGTTACAAAGAAACAACACA 57.616 32.000 0.00 0.00 40.05 3.72
5238 11203 6.930731 ACAAAGAAACAACACAACCAGTAAT 58.069 32.000 0.00 0.00 0.00 1.89
5240 11205 7.330700 ACAAAGAAACAACACAACCAGTAATTG 59.669 33.333 0.00 0.00 33.73 2.32
5292 11272 8.648693 AGGCGTATTATTATGAGTTTTCCTAGT 58.351 33.333 0.00 0.00 0.00 2.57
5305 11285 2.803030 TCCTAGTGGAAGACGTAGCT 57.197 50.000 0.00 0.00 39.87 3.32
5306 11286 3.083122 TCCTAGTGGAAGACGTAGCTT 57.917 47.619 0.00 0.00 39.87 3.74
5307 11287 4.226427 TCCTAGTGGAAGACGTAGCTTA 57.774 45.455 0.00 0.00 39.87 3.09
5308 11288 4.197750 TCCTAGTGGAAGACGTAGCTTAG 58.802 47.826 0.00 0.00 39.87 2.18
5309 11289 2.943449 AGTGGAAGACGTAGCTTAGC 57.057 50.000 0.00 0.00 0.00 3.09
5310 11290 2.168496 AGTGGAAGACGTAGCTTAGCA 58.832 47.619 7.07 0.00 0.00 3.49
5311 11291 2.761208 AGTGGAAGACGTAGCTTAGCAT 59.239 45.455 7.07 0.00 0.00 3.79
5312 11292 3.117046 GTGGAAGACGTAGCTTAGCATC 58.883 50.000 7.07 0.00 0.00 3.91
5313 11293 3.024547 TGGAAGACGTAGCTTAGCATCT 58.975 45.455 7.07 0.69 0.00 2.90
5324 11304 4.285863 AGCTTAGCATCTCCAGACTACTT 58.714 43.478 7.07 0.00 0.00 2.24
5329 11309 5.234466 AGCATCTCCAGACTACTTGTTTT 57.766 39.130 0.00 0.00 0.00 2.43
5330 11310 5.625150 AGCATCTCCAGACTACTTGTTTTT 58.375 37.500 0.00 0.00 0.00 1.94
5331 11311 5.703130 AGCATCTCCAGACTACTTGTTTTTC 59.297 40.000 0.00 0.00 0.00 2.29
5366 11346 8.081517 TCTTAAGTGGAATTTCGAGGGTATTA 57.918 34.615 1.63 0.00 0.00 0.98
5391 11371 2.439156 GGCTCTTTCGCTGGCCAT 60.439 61.111 5.51 0.00 43.59 4.40
5420 11400 3.256960 GCACCCACTCCTTCCCCA 61.257 66.667 0.00 0.00 0.00 4.96
5422 11402 2.936032 ACCCACTCCTTCCCCAGC 60.936 66.667 0.00 0.00 0.00 4.85
5433 11413 2.036572 CCCCAGCGCCCCTTTTTA 59.963 61.111 2.29 0.00 0.00 1.52
5434 11414 2.052104 CCCCAGCGCCCCTTTTTAG 61.052 63.158 2.29 0.00 0.00 1.85
5435 11415 2.052104 CCCAGCGCCCCTTTTTAGG 61.052 63.158 2.29 0.00 0.00 2.69
5440 11420 3.298958 GCCCCTTTTTAGGCTGGC 58.701 61.111 0.00 0.00 46.14 4.85
5441 11421 2.359169 GCCCCTTTTTAGGCTGGCC 61.359 63.158 3.00 3.00 46.14 5.36
5442 11422 1.685765 CCCCTTTTTAGGCTGGCCC 60.686 63.158 8.11 0.00 36.58 5.80
5443 11423 1.078347 CCCTTTTTAGGCTGGCCCA 59.922 57.895 8.11 0.00 36.58 5.36
5444 11424 0.325577 CCCTTTTTAGGCTGGCCCAT 60.326 55.000 8.11 0.00 36.58 4.00
5445 11425 0.826062 CCTTTTTAGGCTGGCCCATG 59.174 55.000 8.11 0.00 36.58 3.66
5446 11426 0.176449 CTTTTTAGGCTGGCCCATGC 59.824 55.000 8.11 1.41 36.58 4.06
5447 11427 1.603236 TTTTTAGGCTGGCCCATGCG 61.603 55.000 8.11 0.00 38.85 4.73
5495 11475 8.791327 TTTTCATTTCTCTTTTTGCCTTTTCT 57.209 26.923 0.00 0.00 0.00 2.52
5499 11479 8.352942 TCATTTCTCTTTTTGCCTTTTCTAGTC 58.647 33.333 0.00 0.00 0.00 2.59
5501 11481 6.867662 TCTCTTTTTGCCTTTTCTAGTCTG 57.132 37.500 0.00 0.00 0.00 3.51
5502 11482 6.357367 TCTCTTTTTGCCTTTTCTAGTCTGT 58.643 36.000 0.00 0.00 0.00 3.41
5513 11493 9.704098 GCCTTTTCTAGTCTGTAAAATAATTCG 57.296 33.333 0.00 0.00 0.00 3.34
5580 12133 1.149101 TTGAGGGTTTTGCTCCTCCT 58.851 50.000 6.88 0.00 46.71 3.69
5581 12134 0.693049 TGAGGGTTTTGCTCCTCCTC 59.307 55.000 6.88 0.00 46.71 3.71
5582 12135 0.693049 GAGGGTTTTGCTCCTCCTCA 59.307 55.000 0.00 0.00 42.72 3.86
5583 12136 1.073923 GAGGGTTTTGCTCCTCCTCAA 59.926 52.381 0.00 0.00 42.72 3.02
5586 12139 1.266989 GGTTTTGCTCCTCCTCAAACG 59.733 52.381 0.00 0.00 32.58 3.60
5607 12160 2.545322 GGTCGTCGTTTTGAGTCTTCCT 60.545 50.000 0.00 0.00 0.00 3.36
5617 12170 3.935818 TGAGTCTTCCTCTCCGTATCT 57.064 47.619 0.00 0.00 41.11 1.98
5618 12171 3.546724 TGAGTCTTCCTCTCCGTATCTG 58.453 50.000 0.00 0.00 41.11 2.90
5621 12174 1.215673 TCTTCCTCTCCGTATCTGCCT 59.784 52.381 0.00 0.00 0.00 4.75
5622 12175 2.035632 CTTCCTCTCCGTATCTGCCTT 58.964 52.381 0.00 0.00 0.00 4.35
5625 12178 0.461548 CTCTCCGTATCTGCCTTGCA 59.538 55.000 0.00 0.00 36.92 4.08
5629 12182 0.179048 CCGTATCTGCCTTGCATCCA 60.179 55.000 0.00 0.00 38.13 3.41
5631 12184 1.473965 CGTATCTGCCTTGCATCCACT 60.474 52.381 0.00 0.00 38.13 4.00
5632 12185 2.648059 GTATCTGCCTTGCATCCACTT 58.352 47.619 0.00 0.00 38.13 3.16
5633 12186 1.760192 ATCTGCCTTGCATCCACTTC 58.240 50.000 0.00 0.00 38.13 3.01
5634 12187 0.674581 TCTGCCTTGCATCCACTTCG 60.675 55.000 0.00 0.00 38.13 3.79
5635 12188 0.674581 CTGCCTTGCATCCACTTCGA 60.675 55.000 0.00 0.00 38.13 3.71
5636 12189 0.955428 TGCCTTGCATCCACTTCGAC 60.955 55.000 0.00 0.00 31.71 4.20
5637 12190 0.955428 GCCTTGCATCCACTTCGACA 60.955 55.000 0.00 0.00 0.00 4.35
5638 12191 1.522668 CCTTGCATCCACTTCGACAA 58.477 50.000 0.00 0.00 0.00 3.18
5639 12192 1.197721 CCTTGCATCCACTTCGACAAC 59.802 52.381 0.00 0.00 0.00 3.32
5640 12193 2.146342 CTTGCATCCACTTCGACAACT 58.854 47.619 0.00 0.00 0.00 3.16
5641 12194 2.254546 TGCATCCACTTCGACAACTT 57.745 45.000 0.00 0.00 0.00 2.66
5647 12200 1.299541 CACTTCGACAACTTGGCTGT 58.700 50.000 0.00 0.00 0.00 4.40
5661 12214 1.152756 GCTGTTCCAGGGGTGTGTT 60.153 57.895 0.00 0.00 31.21 3.32
5674 12227 1.949525 GGTGTGTTGTGTGCATCTTCT 59.050 47.619 0.00 0.00 0.00 2.85
5679 12232 2.223782 TGTTGTGTGCATCTTCTTTGCC 60.224 45.455 0.00 0.00 39.39 4.52
5681 12234 2.309613 TGTGTGCATCTTCTTTGCCTT 58.690 42.857 0.00 0.00 39.39 4.35
5683 12236 1.614903 TGTGCATCTTCTTTGCCTTGG 59.385 47.619 0.00 0.00 39.39 3.61
5684 12237 1.615392 GTGCATCTTCTTTGCCTTGGT 59.385 47.619 0.00 0.00 39.39 3.67
5685 12238 1.888512 TGCATCTTCTTTGCCTTGGTC 59.111 47.619 0.00 0.00 39.39 4.02
5686 12239 1.135575 GCATCTTCTTTGCCTTGGTCG 60.136 52.381 0.00 0.00 33.95 4.79
5688 12241 2.631160 TCTTCTTTGCCTTGGTCGAA 57.369 45.000 0.00 0.00 0.00 3.71
5690 12243 3.486383 TCTTCTTTGCCTTGGTCGAATT 58.514 40.909 0.00 0.00 0.00 2.17
5743 12298 0.805614 TCGCAGAAGAGTTCGAGGAG 59.194 55.000 0.00 0.00 34.02 3.69
5745 12300 1.178276 GCAGAAGAGTTCGAGGAGGA 58.822 55.000 0.00 0.00 34.02 3.71
5747 12302 2.416701 GCAGAAGAGTTCGAGGAGGAAG 60.417 54.545 0.00 0.00 34.02 3.46
5748 12303 2.165437 CAGAAGAGTTCGAGGAGGAAGG 59.835 54.545 0.00 0.00 34.02 3.46
5749 12304 2.041891 AGAAGAGTTCGAGGAGGAAGGA 59.958 50.000 0.00 0.00 34.02 3.36
5750 12305 2.137810 AGAGTTCGAGGAGGAAGGAG 57.862 55.000 0.00 0.00 0.00 3.69
5751 12306 1.636519 AGAGTTCGAGGAGGAAGGAGA 59.363 52.381 0.00 0.00 0.00 3.71
5752 12307 2.041891 AGAGTTCGAGGAGGAAGGAGAA 59.958 50.000 0.00 0.00 0.00 2.87
5753 12308 2.425668 GAGTTCGAGGAGGAAGGAGAAG 59.574 54.545 0.00 0.00 0.00 2.85
5754 12309 2.041891 AGTTCGAGGAGGAAGGAGAAGA 59.958 50.000 0.00 0.00 0.00 2.87
5755 12310 3.028130 GTTCGAGGAGGAAGGAGAAGAT 58.972 50.000 0.00 0.00 0.00 2.40
5756 12311 2.938838 TCGAGGAGGAAGGAGAAGATC 58.061 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.311935 CCAATCCTTAGTCATGCAACATTTTG 59.688 38.462 0.00 0.00 35.62 2.44
4 5 6.211184 TCCAATCCTTAGTCATGCAACATTTT 59.789 34.615 0.00 0.00 0.00 1.82
5 6 5.716228 TCCAATCCTTAGTCATGCAACATTT 59.284 36.000 0.00 0.00 0.00 2.32
6 7 5.263599 TCCAATCCTTAGTCATGCAACATT 58.736 37.500 0.00 0.00 0.00 2.71
7 8 4.858850 TCCAATCCTTAGTCATGCAACAT 58.141 39.130 0.00 0.00 0.00 2.71
8 9 4.299586 TCCAATCCTTAGTCATGCAACA 57.700 40.909 0.00 0.00 0.00 3.33
9 10 6.291377 TCTATCCAATCCTTAGTCATGCAAC 58.709 40.000 0.00 0.00 0.00 4.17
10 11 6.327365 TCTCTATCCAATCCTTAGTCATGCAA 59.673 38.462 0.00 0.00 0.00 4.08
11 12 5.840693 TCTCTATCCAATCCTTAGTCATGCA 59.159 40.000 0.00 0.00 0.00 3.96
12 13 6.352016 TCTCTATCCAATCCTTAGTCATGC 57.648 41.667 0.00 0.00 0.00 4.06
13 14 6.873076 GCTTCTCTATCCAATCCTTAGTCATG 59.127 42.308 0.00 0.00 0.00 3.07
14 15 6.013812 GGCTTCTCTATCCAATCCTTAGTCAT 60.014 42.308 0.00 0.00 0.00 3.06
15 16 5.305644 GGCTTCTCTATCCAATCCTTAGTCA 59.694 44.000 0.00 0.00 0.00 3.41
16 17 5.279758 GGGCTTCTCTATCCAATCCTTAGTC 60.280 48.000 0.00 0.00 0.00 2.59
17 18 4.595350 GGGCTTCTCTATCCAATCCTTAGT 59.405 45.833 0.00 0.00 0.00 2.24
18 19 4.594920 TGGGCTTCTCTATCCAATCCTTAG 59.405 45.833 0.00 0.00 0.00 2.18
19 20 4.566837 TGGGCTTCTCTATCCAATCCTTA 58.433 43.478 0.00 0.00 0.00 2.69
20 21 3.397527 TGGGCTTCTCTATCCAATCCTT 58.602 45.455 0.00 0.00 0.00 3.36
21 22 3.066208 TGGGCTTCTCTATCCAATCCT 57.934 47.619 0.00 0.00 0.00 3.24
22 23 3.328931 TCATGGGCTTCTCTATCCAATCC 59.671 47.826 0.00 0.00 32.56 3.01
23 24 4.630644 TCATGGGCTTCTCTATCCAATC 57.369 45.455 0.00 0.00 32.56 2.67
24 25 5.393068 TTTCATGGGCTTCTCTATCCAAT 57.607 39.130 0.00 0.00 32.56 3.16
25 26 4.860802 TTTCATGGGCTTCTCTATCCAA 57.139 40.909 0.00 0.00 32.56 3.53
26 27 4.860802 TTTTCATGGGCTTCTCTATCCA 57.139 40.909 0.00 0.00 0.00 3.41
27 28 6.067350 AGATTTTTCATGGGCTTCTCTATCC 58.933 40.000 0.00 0.00 0.00 2.59
28 29 7.067981 ACAAGATTTTTCATGGGCTTCTCTATC 59.932 37.037 0.00 0.00 0.00 2.08
29 30 6.894103 ACAAGATTTTTCATGGGCTTCTCTAT 59.106 34.615 0.00 0.00 0.00 1.98
30 31 6.248433 ACAAGATTTTTCATGGGCTTCTCTA 58.752 36.000 0.00 0.00 0.00 2.43
31 32 5.082425 ACAAGATTTTTCATGGGCTTCTCT 58.918 37.500 0.00 0.00 0.00 3.10
32 33 5.397142 ACAAGATTTTTCATGGGCTTCTC 57.603 39.130 0.00 0.00 0.00 2.87
33 34 6.494835 AGTTACAAGATTTTTCATGGGCTTCT 59.505 34.615 0.00 0.00 0.00 2.85
34 35 6.691508 AGTTACAAGATTTTTCATGGGCTTC 58.308 36.000 0.00 0.00 0.00 3.86
35 36 6.494835 AGAGTTACAAGATTTTTCATGGGCTT 59.505 34.615 0.00 0.00 0.00 4.35
36 37 6.012745 AGAGTTACAAGATTTTTCATGGGCT 58.987 36.000 0.00 0.00 0.00 5.19
37 38 6.272822 AGAGTTACAAGATTTTTCATGGGC 57.727 37.500 0.00 0.00 0.00 5.36
38 39 8.025445 CAGAAGAGTTACAAGATTTTTCATGGG 58.975 37.037 0.00 0.00 0.00 4.00
39 40 8.786898 TCAGAAGAGTTACAAGATTTTTCATGG 58.213 33.333 0.00 0.00 0.00 3.66
45 46 9.360093 CGTCTATCAGAAGAGTTACAAGATTTT 57.640 33.333 0.00 0.00 0.00 1.82
46 47 8.740906 TCGTCTATCAGAAGAGTTACAAGATTT 58.259 33.333 0.00 0.00 29.58 2.17
47 48 8.282455 TCGTCTATCAGAAGAGTTACAAGATT 57.718 34.615 0.00 0.00 29.58 2.40
48 49 7.867305 TCGTCTATCAGAAGAGTTACAAGAT 57.133 36.000 0.00 0.00 29.58 2.40
49 50 7.337184 ACATCGTCTATCAGAAGAGTTACAAGA 59.663 37.037 0.00 0.00 36.25 3.02
50 51 7.476667 ACATCGTCTATCAGAAGAGTTACAAG 58.523 38.462 0.00 0.00 36.25 3.16
51 52 7.392494 ACATCGTCTATCAGAAGAGTTACAA 57.608 36.000 0.00 0.00 36.25 2.41
52 53 8.396390 GTTACATCGTCTATCAGAAGAGTTACA 58.604 37.037 0.00 0.00 36.25 2.41
53 54 8.614346 AGTTACATCGTCTATCAGAAGAGTTAC 58.386 37.037 0.00 2.31 36.25 2.50
54 55 8.734218 AGTTACATCGTCTATCAGAAGAGTTA 57.266 34.615 0.00 0.00 36.25 2.24
55 56 7.633193 AGTTACATCGTCTATCAGAAGAGTT 57.367 36.000 0.00 0.00 36.25 3.01
56 57 8.911918 ATAGTTACATCGTCTATCAGAAGAGT 57.088 34.615 0.00 0.78 36.25 3.24
150 151 1.007842 AGGAGGGGTGGTGTTGTTTTT 59.992 47.619 0.00 0.00 0.00 1.94
151 152 0.634465 AGGAGGGGTGGTGTTGTTTT 59.366 50.000 0.00 0.00 0.00 2.43
152 153 0.634465 AAGGAGGGGTGGTGTTGTTT 59.366 50.000 0.00 0.00 0.00 2.83
153 154 0.185175 GAAGGAGGGGTGGTGTTGTT 59.815 55.000 0.00 0.00 0.00 2.83
154 155 0.697854 AGAAGGAGGGGTGGTGTTGT 60.698 55.000 0.00 0.00 0.00 3.32
155 156 0.478507 AAGAAGGAGGGGTGGTGTTG 59.521 55.000 0.00 0.00 0.00 3.33
156 157 0.478507 CAAGAAGGAGGGGTGGTGTT 59.521 55.000 0.00 0.00 0.00 3.32
157 158 0.697854 ACAAGAAGGAGGGGTGGTGT 60.698 55.000 0.00 0.00 0.00 4.16
158 159 0.036875 GACAAGAAGGAGGGGTGGTG 59.963 60.000 0.00 0.00 0.00 4.17
159 160 0.104409 AGACAAGAAGGAGGGGTGGT 60.104 55.000 0.00 0.00 0.00 4.16
160 161 0.326264 CAGACAAGAAGGAGGGGTGG 59.674 60.000 0.00 0.00 0.00 4.61
161 162 1.002544 GACAGACAAGAAGGAGGGGTG 59.997 57.143 0.00 0.00 0.00 4.61
162 163 1.353091 GACAGACAAGAAGGAGGGGT 58.647 55.000 0.00 0.00 0.00 4.95
163 164 1.352083 TGACAGACAAGAAGGAGGGG 58.648 55.000 0.00 0.00 0.00 4.79
164 165 3.492102 TTTGACAGACAAGAAGGAGGG 57.508 47.619 0.00 0.00 39.77 4.30
165 166 3.817647 CCTTTTGACAGACAAGAAGGAGG 59.182 47.826 15.09 4.75 42.40 4.30
166 167 4.708177 TCCTTTTGACAGACAAGAAGGAG 58.292 43.478 17.11 2.49 42.87 3.69
167 168 4.771114 TCCTTTTGACAGACAAGAAGGA 57.229 40.909 17.11 17.11 43.95 3.36
168 169 5.835113 TTTCCTTTTGACAGACAAGAAGG 57.165 39.130 14.51 14.51 41.88 3.46
192 193 1.895231 GAGGGGGCGTGTCGTTTTT 60.895 57.895 0.00 0.00 0.00 1.94
193 194 2.281276 GAGGGGGCGTGTCGTTTT 60.281 61.111 0.00 0.00 0.00 2.43
218 219 1.096416 GGCGAGGTCGGGAGATATAG 58.904 60.000 0.89 0.00 43.27 1.31
549 911 0.317269 CCAATTATTCGCCGCAGCAG 60.317 55.000 0.00 0.00 39.83 4.24
553 915 0.393132 TCCACCAATTATTCGCCGCA 60.393 50.000 0.00 0.00 0.00 5.69
559 921 4.918810 AGCCGAAATCCACCAATTATTC 57.081 40.909 0.00 0.00 0.00 1.75
900 1307 5.562298 AAATATGTAGTGCCCGGATAAGT 57.438 39.130 0.73 0.00 0.00 2.24
902 1309 7.389330 CACAATAAATATGTAGTGCCCGGATAA 59.611 37.037 0.73 0.00 0.00 1.75
923 1331 6.421485 AGAAGATGGTTAGCTCAATCACAAT 58.579 36.000 0.00 0.00 27.35 2.71
974 1391 3.009115 CCCAAGCCTTCCCCTCGA 61.009 66.667 0.00 0.00 0.00 4.04
1046 1467 8.148999 ACCAATGCCAAAATAAATTGCAAATTT 58.851 25.926 1.71 2.15 0.00 1.82
1085 1510 2.489329 CTGTGAAGTGGCACCATTTAGG 59.511 50.000 15.27 0.00 45.67 2.69
1124 1549 2.688507 TCGTCAAGATCAGCCAAGAAC 58.311 47.619 0.00 0.00 0.00 3.01
1414 2599 8.706521 AGAAAGGTATAAGGTTAGTGGAGATTC 58.293 37.037 0.00 0.00 0.00 2.52
1652 2840 5.428457 TCTCCATTTGCTCCCTAAGAACATA 59.572 40.000 0.00 0.00 0.00 2.29
1733 2934 3.509184 ACTACACTAAGAAAGGTCCCGAC 59.491 47.826 0.00 0.00 0.00 4.79
1745 2946 6.680874 ATCAGGTCGTCTTACTACACTAAG 57.319 41.667 0.00 0.00 0.00 2.18
1749 2950 5.094134 GTGAATCAGGTCGTCTTACTACAC 58.906 45.833 0.00 0.00 0.00 2.90
1891 3126 4.478203 TGGACTCAAAATGAATGGACCAA 58.522 39.130 0.00 0.00 0.00 3.67
1954 3209 2.772224 TGCATGGGGGTTGCAGAT 59.228 55.556 0.00 0.00 44.73 2.90
2003 3273 2.682856 TCCTTCAACTTTCTGCACACAC 59.317 45.455 0.00 0.00 0.00 3.82
2354 3624 9.045223 GCTTCAATTGTTTTTACCAAATTCTCT 57.955 29.630 5.13 0.00 0.00 3.10
2372 3642 2.490903 GGCTCTGTCACATGCTTCAATT 59.509 45.455 0.00 0.00 0.00 2.32
3148 8212 0.106268 TCCAGCAGCCCTGTCAAAAA 60.106 50.000 0.00 0.00 40.06 1.94
3191 8366 8.450964 CGTGTCAATATTAAGGTGAAGTGAAAT 58.549 33.333 0.00 0.00 0.00 2.17
3200 8375 6.902224 TGTGATCGTGTCAATATTAAGGTG 57.098 37.500 0.00 0.00 38.90 4.00
3243 8420 1.470051 CATAACCTTCCCCCAAACCG 58.530 55.000 0.00 0.00 0.00 4.44
3488 8672 6.758886 AGAAAGTCAGAAAGAACACAGTACAG 59.241 38.462 0.00 0.00 0.00 2.74
3622 8820 0.237761 CACAGTGCAGAGAAAGCAGC 59.762 55.000 0.00 0.00 43.63 5.25
3624 8822 2.042686 AACACAGTGCAGAGAAAGCA 57.957 45.000 0.00 0.00 40.19 3.91
3634 8832 4.517453 TCAAGGTGGTTATAAACACAGTGC 59.483 41.667 29.73 15.57 39.31 4.40
3682 8887 4.902448 AGTATTTCTGGATGGAGGGAGTAC 59.098 45.833 0.00 0.00 0.00 2.73
3684 8889 4.014273 AGTATTTCTGGATGGAGGGAGT 57.986 45.455 0.00 0.00 0.00 3.85
3685 8890 4.164988 ACAAGTATTTCTGGATGGAGGGAG 59.835 45.833 0.00 0.00 0.00 4.30
3686 8891 4.111577 ACAAGTATTTCTGGATGGAGGGA 58.888 43.478 0.00 0.00 0.00 4.20
3687 8892 4.455606 GACAAGTATTTCTGGATGGAGGG 58.544 47.826 0.00 0.00 0.00 4.30
3688 8893 4.164988 AGGACAAGTATTTCTGGATGGAGG 59.835 45.833 0.00 0.00 0.00 4.30
3689 8894 5.365021 AGGACAAGTATTTCTGGATGGAG 57.635 43.478 0.00 0.00 0.00 3.86
3690 8895 6.202331 TCTAGGACAAGTATTTCTGGATGGA 58.798 40.000 0.00 0.00 0.00 3.41
3691 8896 6.485830 TCTAGGACAAGTATTTCTGGATGG 57.514 41.667 0.00 0.00 0.00 3.51
3692 8897 8.834465 CATTTCTAGGACAAGTATTTCTGGATG 58.166 37.037 0.00 0.00 0.00 3.51
3693 8898 8.772250 TCATTTCTAGGACAAGTATTTCTGGAT 58.228 33.333 0.00 0.00 0.00 3.41
3694 8899 8.146053 TCATTTCTAGGACAAGTATTTCTGGA 57.854 34.615 0.00 0.00 0.00 3.86
3695 8900 8.792830 TTCATTTCTAGGACAAGTATTTCTGG 57.207 34.615 0.00 0.00 0.00 3.86
3697 8902 9.965902 ACATTCATTTCTAGGACAAGTATTTCT 57.034 29.630 0.00 0.00 0.00 2.52
3706 8911 9.647918 AGTCTAGATACATTCATTTCTAGGACA 57.352 33.333 0.00 0.00 38.67 4.02
3748 8953 9.793259 GTCCTAGAAATGGATAAAATGGATGTA 57.207 33.333 0.00 0.00 35.87 2.29
3749 8954 8.281531 TGTCCTAGAAATGGATAAAATGGATGT 58.718 33.333 0.00 0.00 35.87 3.06
3750 8955 8.696043 TGTCCTAGAAATGGATAAAATGGATG 57.304 34.615 0.00 0.00 35.87 3.51
3751 8956 9.359653 CTTGTCCTAGAAATGGATAAAATGGAT 57.640 33.333 0.00 0.00 34.98 3.41
3752 8957 8.336235 ACTTGTCCTAGAAATGGATAAAATGGA 58.664 33.333 0.00 0.00 34.98 3.41
3753 8958 8.525290 ACTTGTCCTAGAAATGGATAAAATGG 57.475 34.615 0.00 0.00 34.98 3.16
3758 8963 9.847224 GGAAATACTTGTCCTAGAAATGGATAA 57.153 33.333 0.00 0.00 35.87 1.75
3759 8964 8.148351 CGGAAATACTTGTCCTAGAAATGGATA 58.852 37.037 0.00 0.00 35.87 2.59
3760 8965 6.992715 CGGAAATACTTGTCCTAGAAATGGAT 59.007 38.462 0.00 0.00 35.87 3.41
3761 8966 6.346096 CGGAAATACTTGTCCTAGAAATGGA 58.654 40.000 0.00 0.00 0.00 3.41
3762 8967 5.527582 CCGGAAATACTTGTCCTAGAAATGG 59.472 44.000 0.00 0.00 0.00 3.16
3763 8968 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
3764 8969 6.346896 GTCCGGAAATACTTGTCCTAGAAAT 58.653 40.000 5.23 0.00 0.00 2.17
3765 8970 5.622914 CGTCCGGAAATACTTGTCCTAGAAA 60.623 44.000 5.23 0.00 0.00 2.52
3766 8971 4.142315 CGTCCGGAAATACTTGTCCTAGAA 60.142 45.833 5.23 0.00 0.00 2.10
3767 8972 3.379372 CGTCCGGAAATACTTGTCCTAGA 59.621 47.826 5.23 0.00 0.00 2.43
3768 8973 3.490419 CCGTCCGGAAATACTTGTCCTAG 60.490 52.174 5.23 0.00 37.50 3.02
3769 8974 2.428171 CCGTCCGGAAATACTTGTCCTA 59.572 50.000 5.23 0.00 37.50 2.94
3770 8975 1.206371 CCGTCCGGAAATACTTGTCCT 59.794 52.381 5.23 0.00 37.50 3.85
3771 8976 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
3772 8977 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3773 8978 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
3774 8979 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
3775 8980 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
3776 8981 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
3777 8982 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
3778 8983 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3779 8984 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3780 8985 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3781 8986 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3782 8987 2.304056 ACTACTCCCTCCGTCCGGA 61.304 63.158 0.00 0.00 42.90 5.14
3783 8988 2.119655 CACTACTCCCTCCGTCCGG 61.120 68.421 0.00 0.00 0.00 5.14
3784 8989 2.772691 GCACTACTCCCTCCGTCCG 61.773 68.421 0.00 0.00 0.00 4.79
3785 8990 0.971447 AAGCACTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
3786 8991 0.896226 AAAGCACTACTCCCTCCGTC 59.104 55.000 0.00 0.00 0.00 4.79
3787 8992 2.226962 TAAAGCACTACTCCCTCCGT 57.773 50.000 0.00 0.00 0.00 4.69
3788 8993 2.803492 GCATAAAGCACTACTCCCTCCG 60.803 54.545 0.00 0.00 44.79 4.63
3789 8994 2.839975 GCATAAAGCACTACTCCCTCC 58.160 52.381 0.00 0.00 44.79 4.30
3846 9064 2.138596 AAAATGCTCGCAAACACCTG 57.861 45.000 0.00 0.00 0.00 4.00
3991 9229 4.767478 TGGAATCAGAGAGAGATTTGCAG 58.233 43.478 0.00 0.00 35.93 4.41
3992 9230 4.831674 TGGAATCAGAGAGAGATTTGCA 57.168 40.909 0.00 0.00 35.93 4.08
3993 9231 8.313292 AGTATATGGAATCAGAGAGAGATTTGC 58.687 37.037 0.00 0.00 35.93 3.68
4203 9486 8.325997 ACGACAAGATAAAAATTACATAGCGAC 58.674 33.333 0.00 0.00 0.00 5.19
4227 9767 3.747099 AGCAACAGCTAAGCAAATACG 57.253 42.857 6.93 0.00 36.70 3.06
4318 9873 6.374417 AAATCTAGGAACTTTCTACTGGCA 57.626 37.500 0.00 0.00 41.75 4.92
4319 9874 6.403746 GCAAAATCTAGGAACTTTCTACTGGC 60.404 42.308 0.00 0.00 41.75 4.85
4378 10145 8.395633 GGTAGCATAGGTAAAACTAACAACATG 58.604 37.037 0.00 0.00 0.00 3.21
4498 10286 8.030106 GCTACAACCTACTGATTACCATCTATC 58.970 40.741 0.00 0.00 0.00 2.08
4499 10287 7.509318 TGCTACAACCTACTGATTACCATCTAT 59.491 37.037 0.00 0.00 0.00 1.98
4500 10288 6.837048 TGCTACAACCTACTGATTACCATCTA 59.163 38.462 0.00 0.00 0.00 1.98
4501 10289 5.661312 TGCTACAACCTACTGATTACCATCT 59.339 40.000 0.00 0.00 0.00 2.90
4548 10345 6.861065 AATAACGAAAGCTGACTGAAAAGA 57.139 33.333 0.00 0.00 0.00 2.52
4776 10600 5.940470 TCTTCTAATCTCAGGACCTTTTTGC 59.060 40.000 0.00 0.00 0.00 3.68
4777 10601 6.597280 CCTCTTCTAATCTCAGGACCTTTTTG 59.403 42.308 0.00 0.00 0.00 2.44
4778 10602 6.296720 CCCTCTTCTAATCTCAGGACCTTTTT 60.297 42.308 0.00 0.00 0.00 1.94
4785 10609 4.746466 GATCCCCTCTTCTAATCTCAGGA 58.254 47.826 0.00 0.00 0.00 3.86
4813 10643 2.996168 GATGGAATCGCTGGGACCGG 62.996 65.000 0.00 0.00 31.13 5.28
4903 10740 2.012937 TACAAAACCCCGCGATACAG 57.987 50.000 8.23 0.00 0.00 2.74
4934 10772 2.574322 GTGATGTTGTAGTGCGCTTTG 58.426 47.619 9.73 0.00 0.00 2.77
4955 10801 0.972883 ACTGCCTGACTTCAGACCTC 59.027 55.000 7.87 0.00 46.59 3.85
5003 10849 5.293569 CAGCGGGTTTTCTAGAACGATTATT 59.706 40.000 15.15 0.00 0.00 1.40
5010 10860 2.467566 TCCAGCGGGTTTTCTAGAAC 57.532 50.000 4.18 0.00 34.93 3.01
5084 10955 1.001974 AGCTCAACTCGCATTGTGGTA 59.998 47.619 0.00 0.00 33.39 3.25
5107 10978 6.541111 AAAAGAAACCACGAGTACTCATTC 57.459 37.500 22.37 15.85 0.00 2.67
5148 11104 0.109412 GCAGCACATGAAGCAGAACC 60.109 55.000 15.23 0.00 0.00 3.62
5161 11117 2.195123 ATTACCAAACGCCGCAGCAC 62.195 55.000 0.00 0.00 39.83 4.40
5269 11249 9.976511 TCCACTAGGAAAACTCATAATAATACG 57.023 33.333 0.00 0.00 42.23 3.06
5288 11268 3.377485 TGCTAAGCTACGTCTTCCACTAG 59.623 47.826 0.00 0.00 0.00 2.57
5292 11272 3.024547 AGATGCTAAGCTACGTCTTCCA 58.975 45.455 0.00 0.00 0.00 3.53
5297 11277 2.619177 TCTGGAGATGCTAAGCTACGTC 59.381 50.000 0.00 0.00 0.00 4.34
5298 11278 2.359531 GTCTGGAGATGCTAAGCTACGT 59.640 50.000 0.00 0.00 0.00 3.57
5299 11279 2.621055 AGTCTGGAGATGCTAAGCTACG 59.379 50.000 0.00 0.00 0.00 3.51
5300 11280 4.825085 AGTAGTCTGGAGATGCTAAGCTAC 59.175 45.833 0.00 0.00 0.00 3.58
5303 11283 4.142049 ACAAGTAGTCTGGAGATGCTAAGC 60.142 45.833 0.00 0.00 0.00 3.09
5304 11284 5.590530 ACAAGTAGTCTGGAGATGCTAAG 57.409 43.478 0.00 0.00 0.00 2.18
5305 11285 6.360370 AAACAAGTAGTCTGGAGATGCTAA 57.640 37.500 0.00 0.00 0.00 3.09
5306 11286 6.360370 AAAACAAGTAGTCTGGAGATGCTA 57.640 37.500 0.00 0.00 0.00 3.49
5307 11287 4.899352 AAACAAGTAGTCTGGAGATGCT 57.101 40.909 0.00 0.00 0.00 3.79
5308 11288 5.703130 AGAAAAACAAGTAGTCTGGAGATGC 59.297 40.000 0.00 0.00 0.00 3.91
5309 11289 7.736447 AAGAAAAACAAGTAGTCTGGAGATG 57.264 36.000 0.00 0.00 0.00 2.90
5310 11290 8.753497 AAAAGAAAAACAAGTAGTCTGGAGAT 57.247 30.769 0.00 0.00 0.00 2.75
5311 11291 8.575649 AAAAAGAAAAACAAGTAGTCTGGAGA 57.424 30.769 0.00 0.00 0.00 3.71
5312 11292 8.678199 AGAAAAAGAAAAACAAGTAGTCTGGAG 58.322 33.333 0.00 0.00 0.00 3.86
5313 11293 8.575649 AGAAAAAGAAAAACAAGTAGTCTGGA 57.424 30.769 0.00 0.00 0.00 3.86
5366 11346 2.420687 CCAGCGAAAGAGCCCTCTAAAT 60.421 50.000 0.00 0.00 39.39 1.40
5420 11400 1.678970 CAGCCTAAAAAGGGGCGCT 60.679 57.895 7.64 0.00 0.00 5.92
5422 11402 2.710902 GCCAGCCTAAAAAGGGGCG 61.711 63.158 0.00 0.00 0.00 6.13
5428 11408 1.603236 CGCATGGGCCAGCCTAAAAA 61.603 55.000 13.78 0.00 36.38 1.94
5469 11449 9.230122 AGAAAAGGCAAAAAGAGAAATGAAAAA 57.770 25.926 0.00 0.00 0.00 1.94
5470 11450 8.791327 AGAAAAGGCAAAAAGAGAAATGAAAA 57.209 26.923 0.00 0.00 0.00 2.29
5471 11451 9.533253 CTAGAAAAGGCAAAAAGAGAAATGAAA 57.467 29.630 0.00 0.00 0.00 2.69
5472 11452 8.695456 ACTAGAAAAGGCAAAAAGAGAAATGAA 58.305 29.630 0.00 0.00 0.00 2.57
5473 11453 8.237811 ACTAGAAAAGGCAAAAAGAGAAATGA 57.762 30.769 0.00 0.00 0.00 2.57
5474 11454 8.355913 AGACTAGAAAAGGCAAAAAGAGAAATG 58.644 33.333 0.00 0.00 34.57 2.32
5475 11455 8.355913 CAGACTAGAAAAGGCAAAAAGAGAAAT 58.644 33.333 0.00 0.00 34.57 2.17
5476 11456 7.339466 ACAGACTAGAAAAGGCAAAAAGAGAAA 59.661 33.333 0.00 0.00 34.57 2.52
5477 11457 6.828785 ACAGACTAGAAAAGGCAAAAAGAGAA 59.171 34.615 0.00 0.00 34.57 2.87
5478 11458 6.357367 ACAGACTAGAAAAGGCAAAAAGAGA 58.643 36.000 0.00 0.00 34.57 3.10
5479 11459 6.625873 ACAGACTAGAAAAGGCAAAAAGAG 57.374 37.500 0.00 0.00 34.57 2.85
5480 11460 8.514330 TTTACAGACTAGAAAAGGCAAAAAGA 57.486 30.769 0.00 0.00 34.57 2.52
5481 11461 9.750125 ATTTTACAGACTAGAAAAGGCAAAAAG 57.250 29.630 0.00 0.00 34.57 2.27
5487 11467 9.704098 CGAATTATTTTACAGACTAGAAAAGGC 57.296 33.333 0.00 0.00 0.00 4.35
5490 11470 9.947433 TCCCGAATTATTTTACAGACTAGAAAA 57.053 29.630 0.00 0.00 0.00 2.29
5495 11475 9.893634 TGAAATCCCGAATTATTTTACAGACTA 57.106 29.630 0.00 0.00 0.00 2.59
5541 11521 9.112725 CCCTCAACATTTTTCAAAATTCTCTTT 57.887 29.630 0.00 0.00 36.52 2.52
5542 11522 8.267183 ACCCTCAACATTTTTCAAAATTCTCTT 58.733 29.630 0.00 0.00 36.52 2.85
5544 11524 8.437360 AACCCTCAACATTTTTCAAAATTCTC 57.563 30.769 0.00 0.00 36.52 2.87
5546 11526 9.288124 CAAAACCCTCAACATTTTTCAAAATTC 57.712 29.630 0.00 0.00 36.52 2.17
5548 11528 7.122501 AGCAAAACCCTCAACATTTTTCAAAAT 59.877 29.630 0.00 0.00 39.07 1.82
5549 11529 6.432472 AGCAAAACCCTCAACATTTTTCAAAA 59.568 30.769 0.00 0.00 0.00 2.44
5563 11569 0.693049 TGAGGAGGAGCAAAACCCTC 59.307 55.000 0.00 0.00 46.29 4.30
5586 12139 1.791204 GGAAGACTCAAAACGACGACC 59.209 52.381 0.00 0.00 0.00 4.79
5602 12155 1.698506 AGGCAGATACGGAGAGGAAG 58.301 55.000 0.00 0.00 0.00 3.46
5607 12160 1.069204 GATGCAAGGCAGATACGGAGA 59.931 52.381 0.00 0.00 43.65 3.71
5617 12170 0.955428 GTCGAAGTGGATGCAAGGCA 60.955 55.000 0.00 0.00 44.86 4.75
5618 12171 0.955428 TGTCGAAGTGGATGCAAGGC 60.955 55.000 0.00 0.00 0.00 4.35
5621 12174 2.254546 AGTTGTCGAAGTGGATGCAA 57.745 45.000 0.00 0.00 0.00 4.08
5622 12175 1.872952 CAAGTTGTCGAAGTGGATGCA 59.127 47.619 0.00 0.00 0.00 3.96
5625 12178 1.072331 AGCCAAGTTGTCGAAGTGGAT 59.928 47.619 1.45 0.00 0.00 3.41
5629 12182 1.940613 GAACAGCCAAGTTGTCGAAGT 59.059 47.619 1.45 0.00 0.00 3.01
5631 12184 1.305201 GGAACAGCCAAGTTGTCGAA 58.695 50.000 1.45 0.00 36.34 3.71
5632 12185 0.179234 TGGAACAGCCAAGTTGTCGA 59.821 50.000 1.45 0.00 45.87 4.20
5633 12186 2.701587 TGGAACAGCCAAGTTGTCG 58.298 52.632 1.45 0.00 45.87 4.35
5647 12200 0.395036 CACACAACACACCCCTGGAA 60.395 55.000 0.00 0.00 0.00 3.53
5661 12214 1.985473 AGGCAAAGAAGATGCACACA 58.015 45.000 0.00 0.00 45.60 3.72
5690 12243 2.512476 GGTCCCCATAGGCCTAGAAAAA 59.488 50.000 19.33 0.00 34.51 1.94
5696 12251 0.192566 ATTCGGTCCCCATAGGCCTA 59.807 55.000 16.60 16.60 34.51 3.93
5707 12262 1.301009 GATCCGCTCCATTCGGTCC 60.301 63.158 1.22 0.00 46.49 4.46
5708 12263 1.661821 CGATCCGCTCCATTCGGTC 60.662 63.158 1.22 0.00 46.49 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.