Multiple sequence alignment - TraesCS1A01G376000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G376000 chr1A 100.000 4214 0 0 1 4214 550423474 550427687 0.000000e+00 7782.0
1 TraesCS1A01G376000 chr1A 79.030 1588 248 44 1427 2986 575190131 575188601 0.000000e+00 1009.0
2 TraesCS1A01G376000 chr1A 76.206 1576 286 60 1411 2950 575227621 575226099 0.000000e+00 750.0
3 TraesCS1A01G376000 chr1A 76.206 1576 286 60 1411 2950 575246092 575244570 0.000000e+00 750.0
4 TraesCS1A01G376000 chr1A 96.000 75 3 0 3855 3929 100688894 100688820 5.720000e-24 122.0
5 TraesCS1A01G376000 chr1B 91.697 1903 104 21 1399 3281 628008195 628010063 0.000000e+00 2590.0
6 TraesCS1A01G376000 chr1B 84.587 2180 248 49 1023 3164 628030940 628033069 0.000000e+00 2084.0
7 TraesCS1A01G376000 chr1B 90.494 789 73 2 2 789 322418331 322417544 0.000000e+00 1040.0
8 TraesCS1A01G376000 chr1B 78.891 1587 274 41 1427 2987 667058764 667057213 0.000000e+00 1018.0
9 TraesCS1A01G376000 chr1B 77.384 1552 273 48 1428 2950 666977704 666979206 0.000000e+00 850.0
10 TraesCS1A01G376000 chr1B 76.894 1584 289 57 1411 2950 667136291 667134741 0.000000e+00 826.0
11 TraesCS1A01G376000 chr1B 85.143 525 39 20 822 1318 628007679 628008192 6.290000e-138 501.0
12 TraesCS1A01G376000 chr1B 92.070 227 12 3 3988 4214 628010242 628010462 8.800000e-82 315.0
13 TraesCS1A01G376000 chr1B 95.833 72 2 1 3856 3926 314737695 314737624 9.570000e-22 115.0
14 TraesCS1A01G376000 chr1B 100.000 28 0 0 3083 3110 628009776 628009803 8.000000e-03 52.8
15 TraesCS1A01G376000 chr1D 93.846 845 25 11 2993 3817 457950693 457951530 0.000000e+00 1247.0
16 TraesCS1A01G376000 chr1D 94.687 734 29 4 2264 2997 457949890 457950613 0.000000e+00 1131.0
17 TraesCS1A01G376000 chr1D 94.146 615 33 2 1359 1970 457947323 457947937 0.000000e+00 933.0
18 TraesCS1A01G376000 chr1D 78.147 1414 242 37 1600 2987 478942461 478941089 0.000000e+00 837.0
19 TraesCS1A01G376000 chr1D 77.360 1462 266 50 1438 2879 478992222 478990806 0.000000e+00 806.0
20 TraesCS1A01G376000 chr1D 87.200 500 33 13 824 1306 457946821 457947306 1.330000e-149 540.0
21 TraesCS1A01G376000 chr1D 92.105 266 16 1 1968 2228 457949625 457949890 1.850000e-98 370.0
22 TraesCS1A01G376000 chr1D 84.127 189 22 7 1427 1611 478961706 478961522 4.330000e-40 176.0
23 TraesCS1A01G376000 chr1D 79.231 130 27 0 1433 1562 423645850 423645979 1.610000e-14 91.6
24 TraesCS1A01G376000 chr3D 91.403 791 64 4 1 789 159574347 159575135 0.000000e+00 1081.0
25 TraesCS1A01G376000 chr3D 90.152 792 75 3 1 789 228165501 228166292 0.000000e+00 1027.0
26 TraesCS1A01G376000 chr7D 90.680 794 69 5 1 789 475724344 475723551 0.000000e+00 1051.0
27 TraesCS1A01G376000 chr7D 90.633 790 73 1 1 789 575750852 575750063 0.000000e+00 1048.0
28 TraesCS1A01G376000 chr7D 90.278 792 73 4 1 789 581023846 581023056 0.000000e+00 1033.0
29 TraesCS1A01G376000 chr5D 90.152 792 75 3 1 789 106691159 106690368 0.000000e+00 1027.0
30 TraesCS1A01G376000 chr5B 90.114 789 77 1 2 789 400552616 400551828 0.000000e+00 1024.0
31 TraesCS1A01G376000 chr6D 89.381 791 82 2 1 789 19643706 19644496 0.000000e+00 994.0
32 TraesCS1A01G376000 chr5A 74.709 344 63 18 1805 2133 24798124 24797790 9.510000e-27 132.0
33 TraesCS1A01G376000 chr5A 100.000 31 0 0 785 815 609858513 609858483 1.640000e-04 58.4
34 TraesCS1A01G376000 chr7B 97.260 73 1 1 3855 3926 686837836 686837908 5.720000e-24 122.0
35 TraesCS1A01G376000 chr7A 97.260 73 1 1 3855 3926 393486897 393486825 5.720000e-24 122.0
36 TraesCS1A01G376000 chr2A 95.890 73 3 0 3857 3929 117364504 117364432 7.400000e-23 119.0
37 TraesCS1A01G376000 chr2A 95.890 73 3 0 3857 3929 682545627 682545555 7.400000e-23 119.0
38 TraesCS1A01G376000 chr2A 95.833 72 3 0 3855 3926 729485471 729485542 2.660000e-22 117.0
39 TraesCS1A01G376000 chr6A 95.833 72 2 1 3856 3926 135052542 135052613 9.570000e-22 115.0
40 TraesCS1A01G376000 chr3A 94.667 75 3 1 3856 3929 732473096 732473022 9.570000e-22 115.0
41 TraesCS1A01G376000 chr4D 100.000 32 0 0 785 816 405710396 405710427 4.550000e-05 60.2
42 TraesCS1A01G376000 chr3B 96.774 31 1 0 785 815 139197735 139197765 8.000000e-03 52.8
43 TraesCS1A01G376000 chr3B 96.774 31 1 0 785 815 704264306 704264336 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G376000 chr1A 550423474 550427687 4213 False 7782.0 7782 100.0000 1 4214 1 chr1A.!!$F1 4213
1 TraesCS1A01G376000 chr1A 575188601 575190131 1530 True 1009.0 1009 79.0300 1427 2986 1 chr1A.!!$R2 1559
2 TraesCS1A01G376000 chr1A 575226099 575227621 1522 True 750.0 750 76.2060 1411 2950 1 chr1A.!!$R3 1539
3 TraesCS1A01G376000 chr1A 575244570 575246092 1522 True 750.0 750 76.2060 1411 2950 1 chr1A.!!$R4 1539
4 TraesCS1A01G376000 chr1B 628030940 628033069 2129 False 2084.0 2084 84.5870 1023 3164 1 chr1B.!!$F1 2141
5 TraesCS1A01G376000 chr1B 322417544 322418331 787 True 1040.0 1040 90.4940 2 789 1 chr1B.!!$R2 787
6 TraesCS1A01G376000 chr1B 667057213 667058764 1551 True 1018.0 1018 78.8910 1427 2987 1 chr1B.!!$R3 1560
7 TraesCS1A01G376000 chr1B 628007679 628010462 2783 False 864.7 2590 92.2275 822 4214 4 chr1B.!!$F3 3392
8 TraesCS1A01G376000 chr1B 666977704 666979206 1502 False 850.0 850 77.3840 1428 2950 1 chr1B.!!$F2 1522
9 TraesCS1A01G376000 chr1B 667134741 667136291 1550 True 826.0 826 76.8940 1411 2950 1 chr1B.!!$R4 1539
10 TraesCS1A01G376000 chr1D 457946821 457951530 4709 False 844.2 1247 92.3968 824 3817 5 chr1D.!!$F2 2993
11 TraesCS1A01G376000 chr1D 478941089 478942461 1372 True 837.0 837 78.1470 1600 2987 1 chr1D.!!$R1 1387
12 TraesCS1A01G376000 chr1D 478990806 478992222 1416 True 806.0 806 77.3600 1438 2879 1 chr1D.!!$R3 1441
13 TraesCS1A01G376000 chr3D 159574347 159575135 788 False 1081.0 1081 91.4030 1 789 1 chr3D.!!$F1 788
14 TraesCS1A01G376000 chr3D 228165501 228166292 791 False 1027.0 1027 90.1520 1 789 1 chr3D.!!$F2 788
15 TraesCS1A01G376000 chr7D 475723551 475724344 793 True 1051.0 1051 90.6800 1 789 1 chr7D.!!$R1 788
16 TraesCS1A01G376000 chr7D 575750063 575750852 789 True 1048.0 1048 90.6330 1 789 1 chr7D.!!$R2 788
17 TraesCS1A01G376000 chr7D 581023056 581023846 790 True 1033.0 1033 90.2780 1 789 1 chr7D.!!$R3 788
18 TraesCS1A01G376000 chr5D 106690368 106691159 791 True 1027.0 1027 90.1520 1 789 1 chr5D.!!$R1 788
19 TraesCS1A01G376000 chr5B 400551828 400552616 788 True 1024.0 1024 90.1140 2 789 1 chr5B.!!$R1 787
20 TraesCS1A01G376000 chr6D 19643706 19644496 790 False 994.0 994 89.3810 1 789 1 chr6D.!!$F1 788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 805 0.031857 CATGCAAACTCAAACGCCCA 59.968 50.0 0.00 0.0 0.00 5.36 F
794 806 0.031994 ATGCAAACTCAAACGCCCAC 59.968 50.0 0.00 0.0 0.00 4.61 F
810 822 0.108520 CCACACGTATGGGCGTTAGT 60.109 55.0 4.49 0.0 43.83 2.24 F
1406 1468 0.250081 GACAGCAGATTCCCGGATCC 60.250 60.0 0.73 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2238 4127 0.097674 ATAACCGTCGAGTCGAACGG 59.902 55.000 34.36 34.36 46.81 4.44 R
2465 4383 0.744281 ACAACTTTTCCAAGCACGGG 59.256 50.000 0.00 0.00 32.57 5.28 R
2593 4530 2.618709 CCTGGTCCACTTGACTGAAAAC 59.381 50.000 0.00 0.00 43.89 2.43 R
3241 5298 2.826428 AGCATATCAATTCGTGCGACT 58.174 42.857 0.00 0.00 42.18 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 1.755959 ACAGTTGCCATGTTGCTGAAA 59.244 42.857 9.69 0.00 0.00 2.69
58 59 6.278172 TGTTGCTGAAATACAATTGCCATA 57.722 33.333 5.05 0.00 0.00 2.74
91 92 0.664166 GTTGCCATGGTTGCTCAACG 60.664 55.000 14.67 0.00 42.02 4.10
107 108 2.479566 AACGGCAGTTGTCATCTCAT 57.520 45.000 0.00 0.00 39.48 2.90
135 138 1.134907 GCCAGATGCCATTTTGGACAG 60.135 52.381 11.95 0.00 40.96 3.51
138 141 2.232941 CAGATGCCATTTTGGACAGCTT 59.767 45.455 0.00 0.00 40.96 3.74
218 222 6.073314 AGGAGTTGTCACCTACTAACACTAA 58.927 40.000 0.00 0.00 33.06 2.24
225 229 6.491062 TGTCACCTACTAACACTAAGCAGTTA 59.509 38.462 0.00 0.00 30.46 2.24
230 234 7.616935 ACCTACTAACACTAAGCAGTTACCATA 59.383 37.037 0.00 0.00 30.46 2.74
241 245 5.844004 AGCAGTTACCATATAGCACTACAC 58.156 41.667 0.00 0.00 0.00 2.90
260 266 7.814107 CACTACACAAAGACATGGCAAAATAAT 59.186 33.333 0.00 0.00 0.00 1.28
267 274 9.368674 CAAAGACATGGCAAAATAATATGTTCA 57.631 29.630 0.00 0.00 32.58 3.18
333 342 1.935799 TGCCATGTACCCTGCAAAAT 58.064 45.000 0.00 0.00 0.00 1.82
335 344 3.641046 TGCCATGTACCCTGCAAAATAT 58.359 40.909 0.00 0.00 0.00 1.28
343 352 5.837979 TGTACCCTGCAAAATATATGGCAAT 59.162 36.000 0.00 0.00 35.59 3.56
345 354 6.992664 ACCCTGCAAAATATATGGCAATTA 57.007 33.333 0.00 0.00 35.59 1.40
495 506 5.127845 CAGGTAAAGAGAGAGTTGCCATCTA 59.872 44.000 0.00 0.00 32.40 1.98
504 515 5.482175 AGAGAGTTGCCATCTACTTACAAGT 59.518 40.000 0.00 0.00 42.91 3.16
543 554 2.937519 TGTACCCTGCAAAACACATGA 58.062 42.857 0.00 0.00 0.00 3.07
547 558 2.699846 ACCCTGCAAAACACATGACAAT 59.300 40.909 0.00 0.00 0.00 2.71
554 565 6.157904 TGCAAAACACATGACAATTGATAGG 58.842 36.000 13.59 4.69 0.00 2.57
587 598 3.681835 GGAGACGAGCGTGTGGGT 61.682 66.667 0.00 0.00 0.00 4.51
595 606 1.222115 GAGCGTGTGGGTGAACTGAC 61.222 60.000 0.00 0.00 0.00 3.51
609 620 1.750193 ACTGACAAACACCCACACAG 58.250 50.000 0.00 0.00 0.00 3.66
670 682 3.784412 CTAAACGCCCACGCACCG 61.784 66.667 0.00 0.00 45.53 4.94
671 683 4.605634 TAAACGCCCACGCACCGT 62.606 61.111 0.00 0.00 45.53 4.83
690 702 0.105964 TCACCTCCGTGTGTGGAAAG 59.894 55.000 0.00 0.00 41.09 2.62
702 714 0.112412 GTGGAAAGGGATGTGTGGGT 59.888 55.000 0.00 0.00 0.00 4.51
789 801 5.116074 GTCAAGATTCATGCAAACTCAAACG 59.884 40.000 0.00 0.00 0.00 3.60
790 802 3.568538 AGATTCATGCAAACTCAAACGC 58.431 40.909 0.00 0.00 0.00 4.84
791 803 2.132740 TTCATGCAAACTCAAACGCC 57.867 45.000 0.00 0.00 0.00 5.68
792 804 0.313672 TCATGCAAACTCAAACGCCC 59.686 50.000 0.00 0.00 0.00 6.13
793 805 0.031857 CATGCAAACTCAAACGCCCA 59.968 50.000 0.00 0.00 0.00 5.36
794 806 0.031994 ATGCAAACTCAAACGCCCAC 59.968 50.000 0.00 0.00 0.00 4.61
795 807 1.315981 TGCAAACTCAAACGCCCACA 61.316 50.000 0.00 0.00 0.00 4.17
796 808 0.869880 GCAAACTCAAACGCCCACAC 60.870 55.000 0.00 0.00 0.00 3.82
797 809 0.591236 CAAACTCAAACGCCCACACG 60.591 55.000 0.00 0.00 39.50 4.49
808 820 4.915298 CCACACGTATGGGCGTTA 57.085 55.556 4.49 0.00 43.83 3.18
809 821 2.673074 CCACACGTATGGGCGTTAG 58.327 57.895 4.49 0.00 43.83 2.34
810 822 0.108520 CCACACGTATGGGCGTTAGT 60.109 55.000 4.49 0.00 43.83 2.24
811 823 1.134753 CCACACGTATGGGCGTTAGTA 59.865 52.381 4.49 0.00 43.83 1.82
812 824 2.223876 CCACACGTATGGGCGTTAGTAT 60.224 50.000 4.49 0.00 43.83 2.12
813 825 3.450578 CACACGTATGGGCGTTAGTATT 58.549 45.455 0.00 0.00 43.83 1.89
814 826 3.866910 CACACGTATGGGCGTTAGTATTT 59.133 43.478 0.00 0.00 43.83 1.40
815 827 4.026310 CACACGTATGGGCGTTAGTATTTC 60.026 45.833 0.00 0.00 43.83 2.17
816 828 4.142093 ACACGTATGGGCGTTAGTATTTCT 60.142 41.667 0.00 0.00 43.83 2.52
817 829 4.208460 CACGTATGGGCGTTAGTATTTCTG 59.792 45.833 0.00 0.00 43.83 3.02
818 830 4.098349 ACGTATGGGCGTTAGTATTTCTGA 59.902 41.667 0.00 0.00 43.04 3.27
819 831 4.443394 CGTATGGGCGTTAGTATTTCTGAC 59.557 45.833 0.00 0.00 0.00 3.51
820 832 3.965379 TGGGCGTTAGTATTTCTGACA 57.035 42.857 0.00 0.00 33.05 3.58
857 870 6.631971 TTGCACTTGTCACTGAATCAATAA 57.368 33.333 0.00 0.00 0.00 1.40
920 933 4.319177 GCCCAATGTATCAGCTACCTAAG 58.681 47.826 0.00 0.00 0.00 2.18
939 952 5.531659 CCTAAGAGAAAATCATCAGCAGCAT 59.468 40.000 0.00 0.00 0.00 3.79
940 953 5.916661 AAGAGAAAATCATCAGCAGCATT 57.083 34.783 0.00 0.00 0.00 3.56
941 954 5.916661 AGAGAAAATCATCAGCAGCATTT 57.083 34.783 0.00 0.00 0.00 2.32
942 955 5.651530 AGAGAAAATCATCAGCAGCATTTG 58.348 37.500 0.00 0.00 0.00 2.32
997 1020 9.923143 TGTCCAGACTATTATATTATCAAACCG 57.077 33.333 0.00 0.00 0.00 4.44
998 1021 9.924650 GTCCAGACTATTATATTATCAAACCGT 57.075 33.333 0.00 0.00 0.00 4.83
1112 1145 1.741770 ACGCTCTCACGCATTTCCC 60.742 57.895 0.00 0.00 36.19 3.97
1175 1216 2.103143 CTCTGATCGCGTCGGCTT 59.897 61.111 5.77 0.00 36.88 4.35
1225 1276 2.837291 CCAGCCTCCTCCTCCTCG 60.837 72.222 0.00 0.00 0.00 4.63
1226 1277 3.535962 CAGCCTCCTCCTCCTCGC 61.536 72.222 0.00 0.00 0.00 5.03
1229 1280 3.522731 CCTCCTCCTCCTCGCGTG 61.523 72.222 5.77 2.75 0.00 5.34
1230 1281 4.200283 CTCCTCCTCCTCGCGTGC 62.200 72.222 5.77 0.00 0.00 5.34
1393 1455 3.311110 GGAGGACCGTGGACAGCA 61.311 66.667 0.00 0.00 0.00 4.41
1394 1456 2.262915 GAGGACCGTGGACAGCAG 59.737 66.667 0.00 0.00 0.00 4.24
1395 1457 2.203640 AGGACCGTGGACAGCAGA 60.204 61.111 0.00 0.00 0.00 4.26
1406 1468 0.250081 GACAGCAGATTCCCGGATCC 60.250 60.000 0.73 0.00 0.00 3.36
2029 3886 6.603095 GTTGTGTCAGAATCAACTCCATTAC 58.397 40.000 10.15 0.00 38.52 1.89
2067 3924 0.790814 GAGCGGTTATAGCAATCGGC 59.209 55.000 0.00 0.00 45.30 5.54
2180 4045 2.125685 GTAATCTCCGCGCCTAAACTC 58.874 52.381 0.00 0.00 0.00 3.01
2189 4054 1.560923 CGCCTAAACTCGAGGTCATG 58.439 55.000 18.41 2.96 36.37 3.07
2233 4122 9.745880 TTATGGTATTAGAATCTCGTTTGACTC 57.254 33.333 0.00 0.00 0.00 3.36
2234 4123 6.263344 TGGTATTAGAATCTCGTTTGACTCG 58.737 40.000 0.00 0.00 0.00 4.18
2235 4124 5.686397 GGTATTAGAATCTCGTTTGACTCGG 59.314 44.000 0.00 0.00 0.00 4.63
2236 4125 1.997669 AGAATCTCGTTTGACTCGGC 58.002 50.000 0.00 0.00 0.00 5.54
2237 4126 1.272490 AGAATCTCGTTTGACTCGGCA 59.728 47.619 0.00 0.00 0.00 5.69
2238 4127 1.390463 GAATCTCGTTTGACTCGGCAC 59.610 52.381 0.00 0.00 0.00 5.01
2239 4128 0.389948 ATCTCGTTTGACTCGGCACC 60.390 55.000 0.00 0.00 0.00 5.01
2240 4129 2.355363 TCGTTTGACTCGGCACCG 60.355 61.111 1.73 1.73 41.35 4.94
2241 4130 2.660552 CGTTTGACTCGGCACCGT 60.661 61.111 9.23 0.00 40.74 4.83
2242 4131 2.241880 CGTTTGACTCGGCACCGTT 61.242 57.895 9.23 0.00 40.74 4.44
2243 4132 1.568025 GTTTGACTCGGCACCGTTC 59.432 57.895 9.23 7.63 40.74 3.95
2274 4164 3.532542 GTTATTCAGGTAGTGTGCCCTC 58.467 50.000 0.00 0.00 0.00 4.30
2372 4290 1.234821 TGAAGCGAATGGGTGTTGAC 58.765 50.000 0.00 0.00 0.00 3.18
2414 4332 5.732288 CGCACTGTCAAGATTTTAGCTATC 58.268 41.667 0.00 0.00 0.00 2.08
2465 4383 5.410746 TGTTCTTGACTTGATGAGATGCTTC 59.589 40.000 0.00 0.00 0.00 3.86
2593 4530 9.813080 TGGTTTTTATTTTGTTTTCTTTGTTCG 57.187 25.926 0.00 0.00 0.00 3.95
3005 5026 7.807680 AGCTTTGCTAACTGTTAGTTTGTATC 58.192 34.615 24.13 9.83 39.51 2.24
3029 5062 8.178313 TCATCTCCTTATTATCGCAGTTAAGA 57.822 34.615 0.00 0.00 0.00 2.10
3070 5107 8.871686 ATGTTAGTTCTGTTGAAACCAATTTC 57.128 30.769 0.00 0.00 43.96 2.17
3358 5416 4.148079 TGGCATGATTTGTGGTTACTTGA 58.852 39.130 0.00 0.00 0.00 3.02
3407 5465 6.845302 TCTAGTTTGCATCAACTATTTGCAG 58.155 36.000 10.64 1.94 46.10 4.41
3442 5506 5.737063 GCTTTGTCTTGGAAGCAAGAAATGA 60.737 40.000 0.00 0.00 45.74 2.57
3452 5516 7.918643 TGGAAGCAAGAAATGAATTTTGTTTC 58.081 30.769 6.41 6.41 32.11 2.78
3453 5517 7.769970 TGGAAGCAAGAAATGAATTTTGTTTCT 59.230 29.630 11.93 9.76 42.30 2.52
3470 5534 6.072112 TGTTTCTTGATGCTGAAAGTAACC 57.928 37.500 10.44 0.00 34.57 2.85
3510 5574 1.734655 TTTTTGCCCCTTGCCCAATA 58.265 45.000 0.00 0.00 40.16 1.90
3535 5599 1.669760 TTCGCGTGGGATGTGGTTC 60.670 57.895 5.77 0.00 0.00 3.62
3591 5659 5.618863 CGGTTTGCATCAACTATTTGCAGTA 60.619 40.000 1.52 0.00 46.10 2.74
3698 5767 1.981636 CTGCTGCTCCTCTCCTTGT 59.018 57.895 0.00 0.00 0.00 3.16
3703 5772 2.581354 CTCCTCTCCTTGTGCGGG 59.419 66.667 0.00 0.00 0.00 6.13
3709 5778 0.472471 TCTCCTTGTGCGGGTTTCTT 59.528 50.000 0.00 0.00 0.00 2.52
3778 5851 2.570468 TTGTTTGTCGATTCGCTTCG 57.430 45.000 0.00 1.00 40.46 3.79
3800 5873 2.201732 GCCGACGATAAATGCTGAAGA 58.798 47.619 0.00 0.00 0.00 2.87
3822 5895 4.582701 TGGAACATTGTAAACTTGCTGG 57.417 40.909 0.00 0.00 0.00 4.85
3823 5896 3.957497 TGGAACATTGTAAACTTGCTGGT 59.043 39.130 0.00 0.00 0.00 4.00
3824 5897 4.202101 TGGAACATTGTAAACTTGCTGGTG 60.202 41.667 0.00 0.00 0.00 4.17
3825 5898 4.037446 GGAACATTGTAAACTTGCTGGTGA 59.963 41.667 0.00 0.00 0.00 4.02
3826 5899 5.451242 GGAACATTGTAAACTTGCTGGTGAA 60.451 40.000 0.00 0.00 0.00 3.18
3827 5900 5.789643 ACATTGTAAACTTGCTGGTGAAT 57.210 34.783 0.00 0.00 0.00 2.57
3828 5901 5.772521 ACATTGTAAACTTGCTGGTGAATC 58.227 37.500 0.00 0.00 0.00 2.52
3829 5902 5.301551 ACATTGTAAACTTGCTGGTGAATCA 59.698 36.000 0.00 0.00 0.00 2.57
3830 5903 5.437289 TTGTAAACTTGCTGGTGAATCAG 57.563 39.130 0.00 0.00 37.79 2.90
3831 5904 4.460263 TGTAAACTTGCTGGTGAATCAGT 58.540 39.130 0.00 0.00 37.12 3.41
3832 5905 4.887071 TGTAAACTTGCTGGTGAATCAGTT 59.113 37.500 0.00 0.00 37.12 3.16
3833 5906 6.058833 TGTAAACTTGCTGGTGAATCAGTTA 58.941 36.000 0.00 0.00 37.12 2.24
3834 5907 6.714810 TGTAAACTTGCTGGTGAATCAGTTAT 59.285 34.615 0.00 0.00 37.12 1.89
3835 5908 6.655078 AAACTTGCTGGTGAATCAGTTATT 57.345 33.333 0.00 0.00 37.12 1.40
3836 5909 5.886960 ACTTGCTGGTGAATCAGTTATTC 57.113 39.130 0.00 0.00 43.77 1.75
3837 5910 4.702131 ACTTGCTGGTGAATCAGTTATTCC 59.298 41.667 0.00 0.00 42.97 3.01
3838 5911 4.299586 TGCTGGTGAATCAGTTATTCCA 57.700 40.909 0.00 0.00 42.97 3.53
3839 5912 4.009675 TGCTGGTGAATCAGTTATTCCAC 58.990 43.478 0.00 0.00 42.97 4.02
3840 5913 4.263462 TGCTGGTGAATCAGTTATTCCACT 60.263 41.667 0.00 0.00 42.97 4.00
3841 5914 4.702131 GCTGGTGAATCAGTTATTCCACTT 59.298 41.667 0.00 0.00 42.97 3.16
3842 5915 5.163713 GCTGGTGAATCAGTTATTCCACTTC 60.164 44.000 0.00 0.00 42.97 3.01
3843 5916 6.126863 TGGTGAATCAGTTATTCCACTTCT 57.873 37.500 0.00 0.00 42.97 2.85
3844 5917 6.542821 TGGTGAATCAGTTATTCCACTTCTT 58.457 36.000 0.00 0.00 42.97 2.52
3845 5918 7.004086 TGGTGAATCAGTTATTCCACTTCTTT 58.996 34.615 0.00 0.00 42.97 2.52
3846 5919 7.174946 TGGTGAATCAGTTATTCCACTTCTTTC 59.825 37.037 0.00 0.00 42.97 2.62
3847 5920 7.362142 GGTGAATCAGTTATTCCACTTCTTTCC 60.362 40.741 0.00 0.00 42.97 3.13
3848 5921 7.174946 GTGAATCAGTTATTCCACTTCTTTCCA 59.825 37.037 0.00 0.00 42.97 3.53
3849 5922 7.391554 TGAATCAGTTATTCCACTTCTTTCCAG 59.608 37.037 0.00 0.00 42.97 3.86
3850 5923 5.003804 TCAGTTATTCCACTTCTTTCCAGC 58.996 41.667 0.00 0.00 0.00 4.85
3851 5924 4.761739 CAGTTATTCCACTTCTTTCCAGCA 59.238 41.667 0.00 0.00 0.00 4.41
3852 5925 4.762251 AGTTATTCCACTTCTTTCCAGCAC 59.238 41.667 0.00 0.00 0.00 4.40
3853 5926 2.727123 TTCCACTTCTTTCCAGCACA 57.273 45.000 0.00 0.00 0.00 4.57
3854 5927 2.957402 TCCACTTCTTTCCAGCACAT 57.043 45.000 0.00 0.00 0.00 3.21
3855 5928 4.365514 TTCCACTTCTTTCCAGCACATA 57.634 40.909 0.00 0.00 0.00 2.29
3856 5929 4.365514 TCCACTTCTTTCCAGCACATAA 57.634 40.909 0.00 0.00 0.00 1.90
3857 5930 4.724399 TCCACTTCTTTCCAGCACATAAA 58.276 39.130 0.00 0.00 0.00 1.40
3858 5931 5.136828 TCCACTTCTTTCCAGCACATAAAA 58.863 37.500 0.00 0.00 0.00 1.52
3859 5932 5.596361 TCCACTTCTTTCCAGCACATAAAAA 59.404 36.000 0.00 0.00 0.00 1.94
3884 5957 6.825944 AAATAAGAACAGAGGGAAAGAAGC 57.174 37.500 0.00 0.00 0.00 3.86
3885 5958 2.869101 AGAACAGAGGGAAAGAAGCC 57.131 50.000 0.00 0.00 0.00 4.35
3886 5959 1.352687 AGAACAGAGGGAAAGAAGCCC 59.647 52.381 0.00 0.00 46.40 5.19
3891 5964 3.181282 GGGAAAGAAGCCCCCTGT 58.819 61.111 0.00 0.00 39.81 4.00
3892 5965 1.000771 GGGAAAGAAGCCCCCTGTC 60.001 63.158 0.00 0.00 39.81 3.51
3893 5966 1.501654 GGGAAAGAAGCCCCCTGTCT 61.502 60.000 0.00 0.00 39.81 3.41
3894 5967 0.405973 GGAAAGAAGCCCCCTGTCTT 59.594 55.000 0.00 0.00 33.01 3.01
3895 5968 1.633945 GGAAAGAAGCCCCCTGTCTTA 59.366 52.381 0.00 0.00 31.41 2.10
3896 5969 2.242452 GGAAAGAAGCCCCCTGTCTTAT 59.758 50.000 0.00 0.00 31.41 1.73
3897 5970 3.309193 GGAAAGAAGCCCCCTGTCTTATT 60.309 47.826 0.00 0.00 31.41 1.40
3898 5971 3.653835 AAGAAGCCCCCTGTCTTATTC 57.346 47.619 0.00 0.00 29.85 1.75
3899 5972 2.852130 AGAAGCCCCCTGTCTTATTCT 58.148 47.619 0.00 0.00 0.00 2.40
3900 5973 3.193782 AGAAGCCCCCTGTCTTATTCTT 58.806 45.455 0.00 0.00 0.00 2.52
3901 5974 4.371681 AGAAGCCCCCTGTCTTATTCTTA 58.628 43.478 0.00 0.00 0.00 2.10
3902 5975 4.978388 AGAAGCCCCCTGTCTTATTCTTAT 59.022 41.667 0.00 0.00 0.00 1.73
3903 5976 6.151049 AGAAGCCCCCTGTCTTATTCTTATA 58.849 40.000 0.00 0.00 0.00 0.98
3904 5977 6.271159 AGAAGCCCCCTGTCTTATTCTTATAG 59.729 42.308 0.00 0.00 0.00 1.31
3905 5978 4.846940 AGCCCCCTGTCTTATTCTTATAGG 59.153 45.833 0.00 0.00 0.00 2.57
3906 5979 4.844655 GCCCCCTGTCTTATTCTTATAGGA 59.155 45.833 0.00 0.00 0.00 2.94
3907 5980 5.046231 GCCCCCTGTCTTATTCTTATAGGAG 60.046 48.000 0.00 0.00 0.00 3.69
3908 5981 6.323737 CCCCCTGTCTTATTCTTATAGGAGA 58.676 44.000 0.00 0.00 0.00 3.71
3909 5982 6.787957 CCCCCTGTCTTATTCTTATAGGAGAA 59.212 42.308 0.00 0.00 39.76 2.87
3910 5983 7.459444 CCCCCTGTCTTATTCTTATAGGAGAAT 59.541 40.741 5.27 5.27 45.65 2.40
3911 5984 8.317679 CCCCTGTCTTATTCTTATAGGAGAATG 58.682 40.741 9.14 0.00 44.05 2.67
3912 5985 9.094578 CCCTGTCTTATTCTTATAGGAGAATGA 57.905 37.037 9.14 2.05 44.05 2.57
3915 5988 9.883293 TGTCTTATTCTTATAGGAGAATGAGGA 57.117 33.333 14.39 6.71 44.02 3.71
3920 5993 8.650143 ATTCTTATAGGAGAATGAGGAGACTC 57.350 38.462 0.00 0.00 45.83 3.36
3921 5994 6.712998 TTCTTATAGGAGAATGAGGAGACTCG 59.287 42.308 0.00 0.00 44.22 4.18
3922 5995 7.420330 TTCTTATAGGAGAATGAGGAGACTCGA 60.420 40.741 0.00 0.00 44.22 4.04
3937 6010 4.099380 GACTCGAACCTAGTCTTTCCAG 57.901 50.000 0.00 0.00 40.21 3.86
3938 6011 2.231721 ACTCGAACCTAGTCTTTCCAGC 59.768 50.000 0.00 0.00 0.00 4.85
3939 6012 2.231478 CTCGAACCTAGTCTTTCCAGCA 59.769 50.000 0.00 0.00 0.00 4.41
3940 6013 2.029290 TCGAACCTAGTCTTTCCAGCAC 60.029 50.000 0.00 0.00 0.00 4.40
3941 6014 2.288825 CGAACCTAGTCTTTCCAGCACA 60.289 50.000 0.00 0.00 0.00 4.57
3942 6015 3.617531 CGAACCTAGTCTTTCCAGCACAT 60.618 47.826 0.00 0.00 0.00 3.21
3943 6016 4.381612 CGAACCTAGTCTTTCCAGCACATA 60.382 45.833 0.00 0.00 0.00 2.29
3944 6017 5.488341 GAACCTAGTCTTTCCAGCACATAA 58.512 41.667 0.00 0.00 0.00 1.90
3945 6018 5.499004 ACCTAGTCTTTCCAGCACATAAA 57.501 39.130 0.00 0.00 0.00 1.40
3946 6019 6.067217 ACCTAGTCTTTCCAGCACATAAAT 57.933 37.500 0.00 0.00 0.00 1.40
3947 6020 7.195374 ACCTAGTCTTTCCAGCACATAAATA 57.805 36.000 0.00 0.00 0.00 1.40
3948 6021 7.275920 ACCTAGTCTTTCCAGCACATAAATAG 58.724 38.462 0.00 0.00 0.00 1.73
3949 6022 6.203723 CCTAGTCTTTCCAGCACATAAATAGC 59.796 42.308 0.00 0.00 0.00 2.97
3950 6023 4.884164 AGTCTTTCCAGCACATAAATAGCC 59.116 41.667 0.00 0.00 0.00 3.93
3951 6024 4.036852 GTCTTTCCAGCACATAAATAGCCC 59.963 45.833 0.00 0.00 0.00 5.19
3952 6025 3.951563 TTCCAGCACATAAATAGCCCT 57.048 42.857 0.00 0.00 0.00 5.19
3953 6026 3.213206 TCCAGCACATAAATAGCCCTG 57.787 47.619 0.00 0.00 0.00 4.45
3954 6027 2.777114 TCCAGCACATAAATAGCCCTGA 59.223 45.455 0.00 0.00 0.00 3.86
3955 6028 3.395607 TCCAGCACATAAATAGCCCTGAT 59.604 43.478 0.00 0.00 0.00 2.90
3956 6029 3.504906 CCAGCACATAAATAGCCCTGATG 59.495 47.826 0.00 0.00 0.00 3.07
3957 6030 4.139786 CAGCACATAAATAGCCCTGATGT 58.860 43.478 0.00 0.00 0.00 3.06
3958 6031 4.581824 CAGCACATAAATAGCCCTGATGTT 59.418 41.667 0.00 0.00 0.00 2.71
3959 6032 4.581824 AGCACATAAATAGCCCTGATGTTG 59.418 41.667 0.00 0.00 0.00 3.33
3960 6033 4.580167 GCACATAAATAGCCCTGATGTTGA 59.420 41.667 0.00 0.00 0.00 3.18
3961 6034 5.278169 GCACATAAATAGCCCTGATGTTGAG 60.278 44.000 0.00 0.00 0.00 3.02
3962 6035 4.823989 ACATAAATAGCCCTGATGTTGAGC 59.176 41.667 0.00 0.00 0.00 4.26
3963 6036 3.659183 AAATAGCCCTGATGTTGAGCT 57.341 42.857 0.00 0.00 37.58 4.09
3964 6037 2.634815 ATAGCCCTGATGTTGAGCTG 57.365 50.000 0.00 0.00 35.03 4.24
3965 6038 0.107508 TAGCCCTGATGTTGAGCTGC 60.108 55.000 0.00 0.00 35.03 5.25
3966 6039 1.378250 GCCCTGATGTTGAGCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
3967 6040 1.375098 GCCCTGATGTTGAGCTGCTC 61.375 60.000 22.38 22.38 0.00 4.26
3968 6041 0.252479 CCCTGATGTTGAGCTGCTCT 59.748 55.000 28.04 9.96 0.00 4.09
3969 6042 1.370609 CCTGATGTTGAGCTGCTCTG 58.629 55.000 28.04 7.58 0.00 3.35
3977 6050 0.903236 TGAGCTGCTCTGATCAAGCT 59.097 50.000 28.04 17.50 40.50 3.74
3984 6057 1.339438 GCTCTGATCAAGCTCCAACCA 60.339 52.381 17.40 0.00 36.80 3.67
4025 6104 0.250901 TGCAGGGTTCTTGCCTCTTC 60.251 55.000 0.00 0.00 0.00 2.87
4044 6123 1.741401 CGCTTGCTGTCGGAATCCA 60.741 57.895 0.00 0.00 0.00 3.41
4047 6126 2.013563 GCTTGCTGTCGGAATCCATGA 61.014 52.381 0.00 0.00 0.00 3.07
4048 6127 1.938577 CTTGCTGTCGGAATCCATGAG 59.061 52.381 0.00 0.00 0.00 2.90
4052 6131 0.462581 TGTCGGAATCCATGAGCTGC 60.463 55.000 0.00 0.00 0.00 5.25
4060 6139 4.098349 GGAATCCATGAGCTGCACAATTTA 59.902 41.667 3.43 0.00 0.00 1.40
4114 6193 4.269183 TGCCAGTGAATCAATTATTCGGT 58.731 39.130 0.00 0.00 46.03 4.69
4128 6207 1.628447 TTCGGTAATTGCACGCGTCC 61.628 55.000 9.86 0.00 0.00 4.79
4160 6239 3.155470 GAATCGACGGTGCATGGCG 62.155 63.158 10.60 10.60 0.00 5.69
4162 6241 2.566057 AATCGACGGTGCATGGCGTA 62.566 55.000 15.57 4.80 0.00 4.42
4169 6248 0.882042 GGTGCATGGCGTATCAGAGG 60.882 60.000 0.00 0.00 0.00 3.69
4170 6249 1.227645 TGCATGGCGTATCAGAGGC 60.228 57.895 0.00 0.00 38.26 4.70
4171 6250 1.227645 GCATGGCGTATCAGAGGCA 60.228 57.895 0.00 0.00 46.75 4.75
4172 6251 1.226686 GCATGGCGTATCAGAGGCAG 61.227 60.000 0.00 0.00 45.93 4.85
4173 6252 0.390492 CATGGCGTATCAGAGGCAGA 59.610 55.000 0.00 0.00 45.93 4.26
4174 6253 0.678395 ATGGCGTATCAGAGGCAGAG 59.322 55.000 0.00 0.00 45.93 3.35
4181 6260 2.254737 ATCAGAGGCAGAGCACAGCC 62.255 60.000 9.58 9.58 46.85 4.85
4191 6270 2.969238 GCACAGCCGATCGATGGG 60.969 66.667 21.14 21.14 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.958355 AGCAACATGGCAACTGTAGTTT 59.042 40.909 0.00 0.00 35.83 2.66
45 46 5.376625 AGTTGTCCGATATGGCAATTGTAT 58.623 37.500 7.40 5.06 36.56 2.29
91 92 2.703416 TGACATGAGATGACAACTGCC 58.297 47.619 0.00 0.00 32.34 4.85
107 108 1.455412 TGGCATCTGGCACTTGACA 59.545 52.632 1.83 0.00 46.12 3.58
190 194 7.234988 AGTGTTAGTAGGTGACAACTCCTAAAT 59.765 37.037 7.08 0.00 41.78 1.40
218 222 5.362717 TGTGTAGTGCTATATGGTAACTGCT 59.637 40.000 11.12 0.00 37.61 4.24
225 229 6.294361 TGTCTTTGTGTAGTGCTATATGGT 57.706 37.500 0.00 0.00 0.00 3.55
230 234 3.941483 GCCATGTCTTTGTGTAGTGCTAT 59.059 43.478 0.00 0.00 0.00 2.97
241 245 9.368674 TGAACATATTATTTTGCCATGTCTTTG 57.631 29.630 0.00 0.00 0.00 2.77
260 266 6.398918 GCAACTCTCTCTTTACCTGAACATA 58.601 40.000 0.00 0.00 0.00 2.29
267 274 4.081198 CAGATGGCAACTCTCTCTTTACCT 60.081 45.833 0.00 0.00 37.61 3.08
333 342 7.287466 ACATCCAAAGCTGTTAATTGCCATATA 59.713 33.333 0.00 0.00 0.00 0.86
335 344 5.421693 ACATCCAAAGCTGTTAATTGCCATA 59.578 36.000 0.00 0.00 0.00 2.74
343 352 3.073798 TCTCCCACATCCAAAGCTGTTAA 59.926 43.478 0.00 0.00 0.00 2.01
345 354 1.425066 TCTCCCACATCCAAAGCTGTT 59.575 47.619 0.00 0.00 0.00 3.16
434 443 5.106197 TGCCATGTCTTTTTGTAGTGCTATG 60.106 40.000 0.00 0.00 0.00 2.23
495 506 7.904205 ACAACTGCCTTAGTATACTTGTAAGT 58.096 34.615 11.40 6.43 39.18 2.24
504 515 6.183360 GGGTACATGACAACTGCCTTAGTATA 60.183 42.308 0.00 0.00 39.18 1.47
511 522 1.003580 CAGGGTACATGACAACTGCCT 59.996 52.381 0.00 0.00 30.77 4.75
543 554 3.831911 CCACACCCAAACCTATCAATTGT 59.168 43.478 5.13 0.00 0.00 2.71
547 558 2.041081 CTCCCACACCCAAACCTATCAA 59.959 50.000 0.00 0.00 0.00 2.57
554 565 0.036875 CTCCTCTCCCACACCCAAAC 59.963 60.000 0.00 0.00 0.00 2.93
587 598 2.088423 GTGTGGGTGTTTGTCAGTTCA 58.912 47.619 0.00 0.00 0.00 3.18
595 606 1.066257 GCTGCTGTGTGGGTGTTTG 59.934 57.895 0.00 0.00 0.00 2.93
618 630 1.918543 GCCAGTTTTCAACGCACGTAC 60.919 52.381 0.00 0.00 36.23 3.67
680 692 1.478471 CCACACATCCCTTTCCACACA 60.478 52.381 0.00 0.00 0.00 3.72
690 702 2.046314 CGGTCACCCACACATCCC 60.046 66.667 0.00 0.00 0.00 3.85
702 714 0.037447 TGTGGGCATTCATTCGGTCA 59.963 50.000 0.00 0.00 0.00 4.02
708 720 1.259609 CTGGTGTGTGGGCATTCATT 58.740 50.000 0.00 0.00 0.00 2.57
796 808 4.443394 GTCAGAAATACTAACGCCCATACG 59.557 45.833 0.00 0.00 39.50 3.06
797 809 5.353938 TGTCAGAAATACTAACGCCCATAC 58.646 41.667 0.00 0.00 0.00 2.39
798 810 5.601583 TGTCAGAAATACTAACGCCCATA 57.398 39.130 0.00 0.00 0.00 2.74
799 811 4.481368 TGTCAGAAATACTAACGCCCAT 57.519 40.909 0.00 0.00 0.00 4.00
800 812 3.965379 TGTCAGAAATACTAACGCCCA 57.035 42.857 0.00 0.00 0.00 5.36
801 813 5.813080 ATTTGTCAGAAATACTAACGCCC 57.187 39.130 0.00 0.00 0.00 6.13
802 814 7.593644 ACAAAATTTGTCAGAAATACTAACGCC 59.406 33.333 5.41 0.00 40.56 5.68
803 815 8.502161 ACAAAATTTGTCAGAAATACTAACGC 57.498 30.769 5.41 0.00 40.56 4.84
812 824 9.809096 TGCAAATACTACAAAATTTGTCAGAAA 57.191 25.926 15.22 0.00 44.12 2.52
813 825 9.243637 GTGCAAATACTACAAAATTTGTCAGAA 57.756 29.630 15.22 0.00 44.12 3.02
814 826 8.629158 AGTGCAAATACTACAAAATTTGTCAGA 58.371 29.630 15.22 2.03 44.12 3.27
815 827 8.801715 AGTGCAAATACTACAAAATTTGTCAG 57.198 30.769 15.22 12.69 44.12 3.51
816 828 9.029243 CAAGTGCAAATACTACAAAATTTGTCA 57.971 29.630 15.22 1.75 44.12 3.58
817 829 9.030301 ACAAGTGCAAATACTACAAAATTTGTC 57.970 29.630 15.22 0.00 44.12 3.18
819 831 9.029243 TGACAAGTGCAAATACTACAAAATTTG 57.971 29.630 3.89 3.89 43.05 2.32
820 832 9.030301 GTGACAAGTGCAAATACTACAAAATTT 57.970 29.630 0.00 0.00 0.00 1.82
828 840 6.934083 TGATTCAGTGACAAGTGCAAATACTA 59.066 34.615 0.00 0.00 0.00 1.82
873 886 7.619161 GCGACACATCATTTTTCCAATTTGTAC 60.619 37.037 0.00 0.00 0.00 2.90
878 891 4.244862 GGCGACACATCATTTTTCCAATT 58.755 39.130 0.00 0.00 0.00 2.32
920 933 5.647589 TCAAATGCTGCTGATGATTTTCTC 58.352 37.500 0.00 0.00 0.00 2.87
953 966 1.134965 ACAAGTCGCTGCTGATACTCC 60.135 52.381 0.00 0.00 0.00 3.85
965 978 9.291664 GATAATATAATAGTCTGGACAAGTCGC 57.708 37.037 3.51 0.00 0.00 5.19
1048 1071 3.150949 CCCACTCACAGGCTGACA 58.849 61.111 23.66 5.71 0.00 3.58
1054 1077 0.036010 ATTCGAAGCCCACTCACAGG 60.036 55.000 3.35 0.00 0.00 4.00
1358 1420 2.960129 GATGTAGGTTCCGCGGCG 60.960 66.667 23.51 16.78 0.00 6.46
1359 1421 2.960129 CGATGTAGGTTCCGCGGC 60.960 66.667 23.51 7.37 0.00 6.53
1360 1422 2.279252 CCGATGTAGGTTCCGCGG 60.279 66.667 22.12 22.12 0.00 6.46
1393 1455 1.674057 GCATCGGATCCGGGAATCT 59.326 57.895 32.79 9.09 40.25 2.40
1394 1456 1.738099 CGCATCGGATCCGGGAATC 60.738 63.158 32.79 16.41 40.25 2.52
1395 1457 2.343758 CGCATCGGATCCGGGAAT 59.656 61.111 32.79 17.23 40.25 3.01
1406 1468 4.271816 CCTCCTCCGTCCGCATCG 62.272 72.222 0.00 0.00 0.00 3.84
1472 1606 2.557372 GGGGAGGAGCGAGACGATC 61.557 68.421 0.79 0.79 41.76 3.69
2029 3886 3.012518 CTCACACCAATGCTTCTAAGGG 58.987 50.000 0.00 0.00 0.00 3.95
2067 3924 9.103861 GATGAGTTCCTTAAATTTGGTCTCTAG 57.896 37.037 0.00 0.00 0.00 2.43
2068 3925 8.602424 TGATGAGTTCCTTAAATTTGGTCTCTA 58.398 33.333 0.00 1.20 0.00 2.43
2180 4045 2.826777 AAAGGCAGCCCATGACCTCG 62.827 60.000 8.22 0.00 37.86 4.63
2189 4054 2.426842 AATGAGTAGAAAGGCAGCCC 57.573 50.000 8.22 0.00 0.00 5.19
2229 4118 2.804090 GTCGAACGGTGCCGAGTC 60.804 66.667 18.16 12.31 42.83 3.36
2230 4119 3.264866 GAGTCGAACGGTGCCGAGT 62.265 63.158 18.16 11.61 42.83 4.18
2231 4120 2.504244 GAGTCGAACGGTGCCGAG 60.504 66.667 18.16 8.19 42.83 4.63
2232 4121 4.394078 CGAGTCGAACGGTGCCGA 62.394 66.667 18.16 2.40 42.83 5.54
2233 4122 4.394078 TCGAGTCGAACGGTGCCG 62.394 66.667 13.98 9.29 46.03 5.69
2234 4123 2.804090 GTCGAGTCGAACGGTGCC 60.804 66.667 18.42 0.00 37.72 5.01
2235 4124 3.164011 CGTCGAGTCGAACGGTGC 61.164 66.667 18.42 2.43 37.72 5.01
2236 4125 2.501222 CCGTCGAGTCGAACGGTG 60.501 66.667 31.04 17.34 41.59 4.94
2238 4127 0.097674 ATAACCGTCGAGTCGAACGG 59.902 55.000 34.36 34.36 46.81 4.44
2239 4128 1.836555 GAATAACCGTCGAGTCGAACG 59.163 52.381 18.42 20.86 37.72 3.95
2240 4129 2.844804 CTGAATAACCGTCGAGTCGAAC 59.155 50.000 18.42 10.62 37.72 3.95
2241 4130 2.159476 CCTGAATAACCGTCGAGTCGAA 60.159 50.000 18.42 0.79 37.72 3.71
2242 4131 1.399440 CCTGAATAACCGTCGAGTCGA 59.601 52.381 12.09 12.09 0.00 4.20
2243 4132 1.131883 ACCTGAATAACCGTCGAGTCG 59.868 52.381 6.09 6.09 0.00 4.18
2274 4164 2.821969 AGCACATTGAAAGCAAGTAGGG 59.178 45.455 0.00 0.00 37.45 3.53
2335 4252 3.548745 TCATGGAGCATGAAAGACGAT 57.451 42.857 0.00 0.00 46.17 3.73
2414 4332 7.714377 ACATCAAGACTAAGAGAATGCATAAGG 59.286 37.037 0.00 0.00 0.00 2.69
2465 4383 0.744281 ACAACTTTTCCAAGCACGGG 59.256 50.000 0.00 0.00 32.57 5.28
2576 4502 8.132604 ACTGAAAACGAACAAAGAAAACAAAA 57.867 26.923 0.00 0.00 0.00 2.44
2577 4503 7.435488 TGACTGAAAACGAACAAAGAAAACAAA 59.565 29.630 0.00 0.00 0.00 2.83
2578 4504 6.918569 TGACTGAAAACGAACAAAGAAAACAA 59.081 30.769 0.00 0.00 0.00 2.83
2579 4505 6.439599 TGACTGAAAACGAACAAAGAAAACA 58.560 32.000 0.00 0.00 0.00 2.83
2580 4506 6.921332 TGACTGAAAACGAACAAAGAAAAC 57.079 33.333 0.00 0.00 0.00 2.43
2581 4507 7.114247 CACTTGACTGAAAACGAACAAAGAAAA 59.886 33.333 0.00 0.00 0.00 2.29
2582 4508 6.580791 CACTTGACTGAAAACGAACAAAGAAA 59.419 34.615 0.00 0.00 0.00 2.52
2583 4509 6.083630 CACTTGACTGAAAACGAACAAAGAA 58.916 36.000 0.00 0.00 0.00 2.52
2593 4530 2.618709 CCTGGTCCACTTGACTGAAAAC 59.381 50.000 0.00 0.00 43.89 2.43
2974 4912 7.979444 ACTAACAGTTAGCAAAGCTCAAATA 57.021 32.000 18.77 0.00 40.44 1.40
2975 4913 6.884280 ACTAACAGTTAGCAAAGCTCAAAT 57.116 33.333 18.77 0.00 40.44 2.32
3005 5026 8.818141 TTCTTAACTGCGATAATAAGGAGATG 57.182 34.615 0.00 0.00 0.00 2.90
3238 5295 3.001228 GCATATCAATTCGTGCGACTTCA 59.999 43.478 0.00 0.00 0.00 3.02
3239 5296 3.246226 AGCATATCAATTCGTGCGACTTC 59.754 43.478 0.00 0.00 42.18 3.01
3240 5297 3.198068 AGCATATCAATTCGTGCGACTT 58.802 40.909 0.00 0.00 42.18 3.01
3241 5298 2.826428 AGCATATCAATTCGTGCGACT 58.174 42.857 0.00 0.00 42.18 4.18
3242 5299 3.246226 AGAAGCATATCAATTCGTGCGAC 59.754 43.478 0.00 0.00 42.18 5.19
3243 5300 3.245990 CAGAAGCATATCAATTCGTGCGA 59.754 43.478 0.00 0.00 42.18 5.10
3407 5465 0.178990 AGACAAAGCCCAGGTGGAAC 60.179 55.000 0.00 0.00 37.39 3.62
3442 5506 9.598517 TTACTTTCAGCATCAAGAAACAAAATT 57.401 25.926 0.00 0.00 31.11 1.82
3452 5516 3.120199 CCACGGTTACTTTCAGCATCAAG 60.120 47.826 0.00 0.00 0.00 3.02
3453 5517 2.811431 CCACGGTTACTTTCAGCATCAA 59.189 45.455 0.00 0.00 0.00 2.57
3455 5519 2.159627 CACCACGGTTACTTTCAGCATC 59.840 50.000 0.00 0.00 0.00 3.91
3470 5534 3.896648 ACAATGACTTTTAGCACCACG 57.103 42.857 0.00 0.00 0.00 4.94
3510 5574 3.329542 ATCCCACGCGAACCATGCT 62.330 57.895 15.93 0.00 0.00 3.79
3591 5659 0.622665 CAAGATGAAGTCCCAGCCCT 59.377 55.000 0.00 0.00 0.00 5.19
3626 5694 2.614057 AGTTCAGCGTCAGGAAACAAAG 59.386 45.455 0.00 0.00 0.00 2.77
3703 5772 3.742882 GCAAATGAAAGAGGGCAAGAAAC 59.257 43.478 0.00 0.00 0.00 2.78
3709 5778 1.888512 GACAGCAAATGAAAGAGGGCA 59.111 47.619 0.00 0.00 0.00 5.36
3749 5818 7.692291 AGCGAATCGACAAACAAATTAATACTG 59.308 33.333 6.91 0.00 0.00 2.74
3778 5851 1.286501 TCAGCATTTATCGTCGGCAC 58.713 50.000 0.00 0.00 0.00 5.01
3795 5868 6.265196 AGCAAGTTTACAATGTTCCATCTTCA 59.735 34.615 0.00 0.00 0.00 3.02
3800 5873 4.588528 ACCAGCAAGTTTACAATGTTCCAT 59.411 37.500 0.00 0.00 0.00 3.41
3817 5890 4.009675 GTGGAATAACTGATTCACCAGCA 58.990 43.478 0.00 0.00 45.15 4.41
3818 5891 4.265073 AGTGGAATAACTGATTCACCAGC 58.735 43.478 0.00 0.00 45.15 4.85
3819 5892 6.176183 AGAAGTGGAATAACTGATTCACCAG 58.824 40.000 0.00 0.00 45.15 4.00
3820 5893 6.126863 AGAAGTGGAATAACTGATTCACCA 57.873 37.500 0.17 0.00 45.15 4.17
3821 5894 7.362142 GGAAAGAAGTGGAATAACTGATTCACC 60.362 40.741 0.17 0.00 45.15 4.02
3822 5895 7.174946 TGGAAAGAAGTGGAATAACTGATTCAC 59.825 37.037 0.17 0.00 45.15 3.18
3823 5896 7.230747 TGGAAAGAAGTGGAATAACTGATTCA 58.769 34.615 0.17 0.00 45.15 2.57
3824 5897 7.627300 GCTGGAAAGAAGTGGAATAACTGATTC 60.627 40.741 0.00 0.00 42.97 2.52
3825 5898 6.151817 GCTGGAAAGAAGTGGAATAACTGATT 59.848 38.462 0.00 0.00 0.00 2.57
3826 5899 5.649831 GCTGGAAAGAAGTGGAATAACTGAT 59.350 40.000 0.00 0.00 0.00 2.90
3827 5900 5.003804 GCTGGAAAGAAGTGGAATAACTGA 58.996 41.667 0.00 0.00 0.00 3.41
3828 5901 4.761739 TGCTGGAAAGAAGTGGAATAACTG 59.238 41.667 0.00 0.00 0.00 3.16
3829 5902 4.762251 GTGCTGGAAAGAAGTGGAATAACT 59.238 41.667 0.00 0.00 0.00 2.24
3830 5903 4.518970 TGTGCTGGAAAGAAGTGGAATAAC 59.481 41.667 0.00 0.00 0.00 1.89
3831 5904 4.724399 TGTGCTGGAAAGAAGTGGAATAA 58.276 39.130 0.00 0.00 0.00 1.40
3832 5905 4.365514 TGTGCTGGAAAGAAGTGGAATA 57.634 40.909 0.00 0.00 0.00 1.75
3833 5906 3.228188 TGTGCTGGAAAGAAGTGGAAT 57.772 42.857 0.00 0.00 0.00 3.01
3834 5907 2.727123 TGTGCTGGAAAGAAGTGGAA 57.273 45.000 0.00 0.00 0.00 3.53
3835 5908 2.957402 ATGTGCTGGAAAGAAGTGGA 57.043 45.000 0.00 0.00 0.00 4.02
3836 5909 5.452078 TTTTATGTGCTGGAAAGAAGTGG 57.548 39.130 0.00 0.00 0.00 4.00
3859 5932 7.255977 GGCTTCTTTCCCTCTGTTCTTATTTTT 60.256 37.037 0.00 0.00 0.00 1.94
3860 5933 6.209589 GGCTTCTTTCCCTCTGTTCTTATTTT 59.790 38.462 0.00 0.00 0.00 1.82
3861 5934 5.712446 GGCTTCTTTCCCTCTGTTCTTATTT 59.288 40.000 0.00 0.00 0.00 1.40
3862 5935 5.257262 GGCTTCTTTCCCTCTGTTCTTATT 58.743 41.667 0.00 0.00 0.00 1.40
3863 5936 4.324641 GGGCTTCTTTCCCTCTGTTCTTAT 60.325 45.833 0.00 0.00 40.66 1.73
3864 5937 3.009143 GGGCTTCTTTCCCTCTGTTCTTA 59.991 47.826 0.00 0.00 40.66 2.10
3865 5938 2.224892 GGGCTTCTTTCCCTCTGTTCTT 60.225 50.000 0.00 0.00 40.66 2.52
3866 5939 1.352687 GGGCTTCTTTCCCTCTGTTCT 59.647 52.381 0.00 0.00 40.66 3.01
3867 5940 1.614583 GGGGCTTCTTTCCCTCTGTTC 60.615 57.143 0.00 0.00 43.41 3.18
3868 5941 0.405973 GGGGCTTCTTTCCCTCTGTT 59.594 55.000 0.00 0.00 43.41 3.16
3869 5942 1.501654 GGGGGCTTCTTTCCCTCTGT 61.502 60.000 0.00 0.00 41.20 3.41
3870 5943 1.304617 GGGGGCTTCTTTCCCTCTG 59.695 63.158 0.00 0.00 41.20 3.35
3871 5944 3.842570 GGGGGCTTCTTTCCCTCT 58.157 61.111 0.00 0.00 41.20 3.69
3874 5947 1.000771 GACAGGGGGCTTCTTTCCC 60.001 63.158 0.00 0.00 43.15 3.97
3875 5948 0.405973 AAGACAGGGGGCTTCTTTCC 59.594 55.000 0.00 0.00 0.00 3.13
3876 5949 3.653835 ATAAGACAGGGGGCTTCTTTC 57.346 47.619 0.00 0.00 31.93 2.62
3877 5950 3.593780 AGAATAAGACAGGGGGCTTCTTT 59.406 43.478 0.00 0.00 31.93 2.52
3878 5951 3.193782 AGAATAAGACAGGGGGCTTCTT 58.806 45.455 0.00 0.00 34.04 2.52
3879 5952 2.852130 AGAATAAGACAGGGGGCTTCT 58.148 47.619 0.00 0.00 0.00 2.85
3880 5953 3.653835 AAGAATAAGACAGGGGGCTTC 57.346 47.619 0.00 0.00 0.00 3.86
3881 5954 5.310857 CCTATAAGAATAAGACAGGGGGCTT 59.689 44.000 0.00 0.00 0.00 4.35
3882 5955 4.846940 CCTATAAGAATAAGACAGGGGGCT 59.153 45.833 0.00 0.00 0.00 5.19
3883 5956 4.844655 TCCTATAAGAATAAGACAGGGGGC 59.155 45.833 0.00 0.00 0.00 5.80
3884 5957 6.323737 TCTCCTATAAGAATAAGACAGGGGG 58.676 44.000 0.00 0.00 0.00 5.40
3885 5958 7.857404 TTCTCCTATAAGAATAAGACAGGGG 57.143 40.000 0.00 0.00 30.38 4.79
3886 5959 9.094578 TCATTCTCCTATAAGAATAAGACAGGG 57.905 37.037 0.36 0.00 42.68 4.45
3889 5962 9.883293 TCCTCATTCTCCTATAAGAATAAGACA 57.117 33.333 0.48 0.00 42.68 3.41
3894 5967 9.747898 GAGTCTCCTCATTCTCCTATAAGAATA 57.252 37.037 0.36 0.00 42.68 1.75
3895 5968 7.393234 CGAGTCTCCTCATTCTCCTATAAGAAT 59.607 40.741 0.00 0.00 44.84 2.40
3896 5969 6.712998 CGAGTCTCCTCATTCTCCTATAAGAA 59.287 42.308 0.00 0.00 39.49 2.52
3897 5970 6.043358 TCGAGTCTCCTCATTCTCCTATAAGA 59.957 42.308 0.00 0.00 37.59 2.10
3898 5971 6.234920 TCGAGTCTCCTCATTCTCCTATAAG 58.765 44.000 0.00 0.00 37.59 1.73
3899 5972 6.189036 TCGAGTCTCCTCATTCTCCTATAA 57.811 41.667 0.00 0.00 37.59 0.98
3900 5973 5.827326 TCGAGTCTCCTCATTCTCCTATA 57.173 43.478 0.00 0.00 37.59 1.31
3901 5974 4.715534 TCGAGTCTCCTCATTCTCCTAT 57.284 45.455 0.00 0.00 37.59 2.57
3902 5975 4.200874 GTTCGAGTCTCCTCATTCTCCTA 58.799 47.826 0.00 0.00 37.59 2.94
3903 5976 3.020984 GTTCGAGTCTCCTCATTCTCCT 58.979 50.000 0.00 0.00 37.59 3.69
3904 5977 2.100087 GGTTCGAGTCTCCTCATTCTCC 59.900 54.545 0.00 0.00 37.59 3.71
3905 5978 3.020984 AGGTTCGAGTCTCCTCATTCTC 58.979 50.000 0.00 0.00 37.59 2.87
3906 5979 3.094484 AGGTTCGAGTCTCCTCATTCT 57.906 47.619 0.00 0.00 37.59 2.40
3907 5980 3.949113 ACTAGGTTCGAGTCTCCTCATTC 59.051 47.826 0.00 0.00 37.59 2.67
3908 5981 3.949113 GACTAGGTTCGAGTCTCCTCATT 59.051 47.826 0.00 0.00 40.23 2.57
3909 5982 3.547746 GACTAGGTTCGAGTCTCCTCAT 58.452 50.000 0.00 0.00 40.23 2.90
3910 5983 2.988570 GACTAGGTTCGAGTCTCCTCA 58.011 52.381 0.00 0.00 40.23 3.86
3916 5989 3.673866 GCTGGAAAGACTAGGTTCGAGTC 60.674 52.174 13.03 0.89 43.12 3.36
3917 5990 2.231721 GCTGGAAAGACTAGGTTCGAGT 59.768 50.000 13.03 0.00 33.54 4.18
3918 5991 2.231478 TGCTGGAAAGACTAGGTTCGAG 59.769 50.000 9.35 9.35 33.97 4.04
3919 5992 2.029290 GTGCTGGAAAGACTAGGTTCGA 60.029 50.000 0.00 0.00 0.00 3.71
3920 5993 2.288825 TGTGCTGGAAAGACTAGGTTCG 60.289 50.000 0.00 0.00 0.00 3.95
3921 5994 3.402628 TGTGCTGGAAAGACTAGGTTC 57.597 47.619 0.00 0.00 0.00 3.62
3922 5995 5.499004 TTATGTGCTGGAAAGACTAGGTT 57.501 39.130 0.00 0.00 0.00 3.50
3923 5996 5.499004 TTTATGTGCTGGAAAGACTAGGT 57.501 39.130 0.00 0.00 0.00 3.08
3924 5997 6.203723 GCTATTTATGTGCTGGAAAGACTAGG 59.796 42.308 0.00 0.00 0.00 3.02
3925 5998 6.203723 GGCTATTTATGTGCTGGAAAGACTAG 59.796 42.308 0.00 0.00 0.00 2.57
3926 5999 6.055588 GGCTATTTATGTGCTGGAAAGACTA 58.944 40.000 0.00 0.00 0.00 2.59
3927 6000 4.884164 GGCTATTTATGTGCTGGAAAGACT 59.116 41.667 0.00 0.00 0.00 3.24
3928 6001 4.036852 GGGCTATTTATGTGCTGGAAAGAC 59.963 45.833 0.00 0.00 0.00 3.01
3929 6002 4.079787 AGGGCTATTTATGTGCTGGAAAGA 60.080 41.667 0.00 0.00 0.00 2.52
3930 6003 4.037208 CAGGGCTATTTATGTGCTGGAAAG 59.963 45.833 0.00 0.00 0.00 2.62
3931 6004 3.953612 CAGGGCTATTTATGTGCTGGAAA 59.046 43.478 0.00 0.00 0.00 3.13
3932 6005 3.201930 TCAGGGCTATTTATGTGCTGGAA 59.798 43.478 0.00 0.00 0.00 3.53
3933 6006 2.777114 TCAGGGCTATTTATGTGCTGGA 59.223 45.455 0.00 0.00 0.00 3.86
3934 6007 3.213206 TCAGGGCTATTTATGTGCTGG 57.787 47.619 0.00 0.00 0.00 4.85
3935 6008 4.139786 ACATCAGGGCTATTTATGTGCTG 58.860 43.478 0.00 0.00 29.93 4.41
3936 6009 4.443978 ACATCAGGGCTATTTATGTGCT 57.556 40.909 0.00 0.00 29.93 4.40
3937 6010 4.580167 TCAACATCAGGGCTATTTATGTGC 59.420 41.667 0.00 0.00 31.44 4.57
3938 6011 5.278169 GCTCAACATCAGGGCTATTTATGTG 60.278 44.000 0.00 0.00 31.44 3.21
3939 6012 4.823989 GCTCAACATCAGGGCTATTTATGT 59.176 41.667 0.00 0.00 32.32 2.29
3940 6013 5.048921 CAGCTCAACATCAGGGCTATTTATG 60.049 44.000 0.00 0.00 0.00 1.90
3941 6014 5.068636 CAGCTCAACATCAGGGCTATTTAT 58.931 41.667 0.00 0.00 0.00 1.40
3942 6015 4.454678 CAGCTCAACATCAGGGCTATTTA 58.545 43.478 0.00 0.00 0.00 1.40
3943 6016 3.285484 CAGCTCAACATCAGGGCTATTT 58.715 45.455 0.00 0.00 0.00 1.40
3944 6017 2.928334 CAGCTCAACATCAGGGCTATT 58.072 47.619 0.00 0.00 0.00 1.73
3945 6018 1.476471 GCAGCTCAACATCAGGGCTAT 60.476 52.381 0.00 0.00 0.00 2.97
3946 6019 0.107508 GCAGCTCAACATCAGGGCTA 60.108 55.000 0.00 0.00 0.00 3.93
3947 6020 1.378250 GCAGCTCAACATCAGGGCT 60.378 57.895 0.00 0.00 0.00 5.19
3948 6021 1.375098 GAGCAGCTCAACATCAGGGC 61.375 60.000 18.17 0.00 0.00 5.19
3949 6022 0.252479 AGAGCAGCTCAACATCAGGG 59.748 55.000 24.64 0.00 32.06 4.45
3950 6023 1.066358 TCAGAGCAGCTCAACATCAGG 60.066 52.381 24.64 3.55 32.06 3.86
3951 6024 2.381725 TCAGAGCAGCTCAACATCAG 57.618 50.000 24.64 5.22 32.06 2.90
3952 6025 2.235402 TGATCAGAGCAGCTCAACATCA 59.765 45.455 24.64 21.70 32.06 3.07
3953 6026 2.902523 TGATCAGAGCAGCTCAACATC 58.097 47.619 24.64 19.66 32.06 3.06
3954 6027 3.271729 CTTGATCAGAGCAGCTCAACAT 58.728 45.455 24.64 12.28 32.06 2.71
3955 6028 2.696506 CTTGATCAGAGCAGCTCAACA 58.303 47.619 24.64 14.41 32.06 3.33
3956 6029 1.397692 GCTTGATCAGAGCAGCTCAAC 59.602 52.381 24.64 12.15 39.89 3.18
3957 6030 1.278413 AGCTTGATCAGAGCAGCTCAA 59.722 47.619 24.64 12.32 42.56 3.02
3958 6031 0.903236 AGCTTGATCAGAGCAGCTCA 59.097 50.000 24.64 4.93 42.56 4.26
3959 6032 1.574134 GAGCTTGATCAGAGCAGCTC 58.426 55.000 24.20 24.20 42.56 4.09
3960 6033 0.178533 GGAGCTTGATCAGAGCAGCT 59.821 55.000 17.50 17.50 42.56 4.24
3961 6034 0.107800 TGGAGCTTGATCAGAGCAGC 60.108 55.000 23.08 17.16 42.56 5.25
3962 6035 2.008329 GTTGGAGCTTGATCAGAGCAG 58.992 52.381 23.08 9.47 42.56 4.24
3963 6036 1.339438 GGTTGGAGCTTGATCAGAGCA 60.339 52.381 23.08 7.89 42.56 4.26
3964 6037 1.339438 TGGTTGGAGCTTGATCAGAGC 60.339 52.381 17.13 17.13 40.43 4.09
3965 6038 2.775911 TGGTTGGAGCTTGATCAGAG 57.224 50.000 0.00 0.00 0.00 3.35
3966 6039 2.356432 CCATGGTTGGAGCTTGATCAGA 60.356 50.000 2.57 0.00 46.92 3.27
3967 6040 2.022195 CCATGGTTGGAGCTTGATCAG 58.978 52.381 2.57 0.00 46.92 2.90
3968 6041 1.956636 GCCATGGTTGGAGCTTGATCA 60.957 52.381 14.67 0.00 46.92 2.92
3969 6042 0.743097 GCCATGGTTGGAGCTTGATC 59.257 55.000 14.67 0.00 46.92 2.92
3977 6050 2.677524 GCAGCAGCCATGGTTGGA 60.678 61.111 27.53 0.00 46.92 3.53
3984 6057 1.064611 AGAGAAATGAGCAGCAGCCAT 60.065 47.619 0.00 0.00 43.56 4.40
4042 6121 5.657474 AGAAATAAATTGTGCAGCTCATGG 58.343 37.500 0.00 0.00 0.00 3.66
4044 6123 5.355071 TCGAGAAATAAATTGTGCAGCTCAT 59.645 36.000 0.00 0.00 0.00 2.90
4047 6126 5.824904 ATCGAGAAATAAATTGTGCAGCT 57.175 34.783 0.00 0.00 0.00 4.24
4048 6127 6.875926 AAATCGAGAAATAAATTGTGCAGC 57.124 33.333 0.00 0.00 0.00 5.25
4060 6139 5.681105 CGTCACACAACAAAAATCGAGAAAT 59.319 36.000 0.00 0.00 0.00 2.17
4114 6193 3.173853 GCAGGACGCGTGCAATTA 58.826 55.556 32.28 0.00 43.54 1.40
4160 6239 1.805871 GCTGTGCTCTGCCTCTGATAC 60.806 57.143 6.39 0.00 33.40 2.24
4162 6241 1.221293 GCTGTGCTCTGCCTCTGAT 59.779 57.895 6.39 0.00 33.40 2.90
4169 6248 2.967929 ATCGATCGGCTGTGCTCTGC 62.968 60.000 16.41 8.93 37.71 4.26
4170 6249 1.067084 ATCGATCGGCTGTGCTCTG 59.933 57.895 16.41 0.00 0.00 3.35
4171 6250 1.067084 CATCGATCGGCTGTGCTCT 59.933 57.895 16.41 0.00 0.00 4.09
4172 6251 1.953138 CCATCGATCGGCTGTGCTC 60.953 63.158 16.41 0.00 0.00 4.26
4173 6252 2.107750 CCATCGATCGGCTGTGCT 59.892 61.111 16.41 0.00 0.00 4.40
4174 6253 2.969238 CCCATCGATCGGCTGTGC 60.969 66.667 16.41 0.00 0.00 4.57
4181 6260 2.470821 GGTTCTACAACCCATCGATCG 58.529 52.381 9.36 9.36 46.01 3.69
4191 6270 1.067071 CCTCCTGACCGGTTCTACAAC 60.067 57.143 9.42 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.