Multiple sequence alignment - TraesCS1A01G374900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G374900 chr1A 100.000 5746 0 0 1 5746 549858107 549852362 0.000000e+00 10611
1 TraesCS1A01G374900 chr1B 91.221 3645 250 26 1573 5171 626726369 626722749 0.000000e+00 4894
2 TraesCS1A01G374900 chr1B 89.502 1486 67 46 70 1506 626728278 626726833 0.000000e+00 1797
3 TraesCS1A01G374900 chr1B 83.333 246 22 9 5162 5398 626721637 626721402 5.830000e-50 209
4 TraesCS1A01G374900 chr1D 92.054 2303 163 7 1582 3871 457179570 457177275 0.000000e+00 3221
5 TraesCS1A01G374900 chr1D 89.941 1521 78 41 67 1560 457181151 457179679 0.000000e+00 1892
6 TraesCS1A01G374900 chr1D 89.495 971 67 16 3917 4882 457177272 457176332 0.000000e+00 1195
7 TraesCS1A01G374900 chr1D 90.169 295 12 7 4957 5240 457176301 457176013 9.100000e-98 368
8 TraesCS1A01G374900 chr1D 88.000 125 8 5 5401 5524 487353257 487353375 2.160000e-29 141
9 TraesCS1A01G374900 chr1D 82.432 148 11 6 5232 5376 457175825 457175690 1.310000e-21 115
10 TraesCS1A01G374900 chr2D 76.505 515 67 27 3898 4395 43247449 43246972 1.250000e-56 231
11 TraesCS1A01G374900 chr7D 77.212 452 60 21 3898 4342 403148724 403148309 2.080000e-54 224
12 TraesCS1A01G374900 chr7D 93.496 123 6 1 5626 5746 12304052 12304174 1.270000e-41 182
13 TraesCS1A01G374900 chr7D 87.597 129 11 4 5397 5524 582646709 582646585 1.670000e-30 145
14 TraesCS1A01G374900 chr7D 87.500 128 11 4 5398 5524 599077700 599077577 6.000000e-30 143
15 TraesCS1A01G374900 chr7D 86.719 128 13 4 5397 5524 582540885 582540762 7.760000e-29 139
16 TraesCS1A01G374900 chr3A 75.800 500 67 31 3913 4395 125423131 125423593 2.710000e-48 204
17 TraesCS1A01G374900 chr3A 90.226 133 7 4 5620 5746 628191909 628192041 9.900000e-38 169
18 TraesCS1A01G374900 chrUn 95.000 120 4 2 5627 5746 474962510 474962393 2.730000e-43 187
19 TraesCS1A01G374900 chr6D 88.732 142 12 3 5385 5524 143644240 143644101 2.750000e-38 171
20 TraesCS1A01G374900 chr2A 93.220 118 5 2 5629 5746 715471724 715471610 2.750000e-38 171
21 TraesCS1A01G374900 chr2A 90.909 121 10 1 5623 5742 759451672 759451792 1.660000e-35 161
22 TraesCS1A01G374900 chr5A 91.270 126 6 3 5626 5746 657457157 657457032 3.560000e-37 167
23 TraesCS1A01G374900 chr5A 88.710 124 11 2 5401 5524 70498820 70498940 1.290000e-31 148
24 TraesCS1A01G374900 chr6A 91.057 123 7 3 5627 5746 38404450 38404571 4.610000e-36 163
25 TraesCS1A01G374900 chr6A 87.943 141 10 3 5612 5746 1691692 1691553 5.960000e-35 159
26 TraesCS1A01G374900 chr5D 91.129 124 6 2 5628 5746 379133293 379133170 4.610000e-36 163
27 TraesCS1A01G374900 chr5D 82.090 134 17 4 5392 5524 445881438 445881565 2.190000e-19 108
28 TraesCS1A01G374900 chr6B 88.281 128 9 5 5397 5523 702667462 702667584 1.290000e-31 148
29 TraesCS1A01G374900 chr4D 86.822 129 14 3 5397 5524 31757809 31757683 2.160000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G374900 chr1A 549852362 549858107 5745 True 10611.0 10611 100.000000 1 5746 1 chr1A.!!$R1 5745
1 TraesCS1A01G374900 chr1B 626721402 626728278 6876 True 2300.0 4894 88.018667 70 5398 3 chr1B.!!$R1 5328
2 TraesCS1A01G374900 chr1D 457175690 457181151 5461 True 1358.2 3221 88.818200 67 5376 5 chr1D.!!$R1 5309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.032815 GGCGGGAGATGCTCTTACTC 59.967 60.0 0.00 0.0 0.00 2.59 F
422 446 0.537188 TGTCGCTTCCTCTGAATCCC 59.463 55.0 0.00 0.0 0.00 3.85 F
469 500 0.692756 CTTTCTCCCTCCTCCCCTCC 60.693 65.0 0.00 0.0 0.00 4.30 F
751 796 0.749454 ATTTGTCCCTCATGGCTCGC 60.749 55.0 0.00 0.0 0.00 5.03 F
2361 2868 0.108804 CGATGGTGTGGCGACTACTT 60.109 55.0 0.00 0.0 0.00 2.24 F
2764 3271 0.097674 CAGAACGCATTGCCTACAGC 59.902 55.0 2.41 0.0 44.14 4.40 F
3704 4211 0.251354 TCTGATGACAGCTCCTTGGC 59.749 55.0 0.00 0.0 43.17 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1252 0.034767 TAGCAAATGCAGCTGCTCCT 60.035 50.0 36.61 25.03 45.79 3.69 R
2119 2623 0.031178 GCCGGCATTGTCATTCCATC 59.969 55.0 24.80 0.00 0.00 3.51 R
2124 2628 0.968405 AACTTGCCGGCATTGTCATT 59.032 45.0 33.25 15.11 0.00 2.57 R
2695 3202 0.680921 AGCAACATTCCCACGGGATG 60.681 55.0 5.43 9.00 44.74 3.51 R
3596 4103 0.473694 TGGAGGACAGGGAAGAGCAA 60.474 55.0 0.00 0.00 0.00 3.91 R
3781 4288 0.679505 TGCATATGTAGGCCGGAGTC 59.320 55.0 5.05 0.00 30.87 3.36 R
5590 7496 0.390340 TTGCAGTCTCCTGATCACGC 60.390 55.0 0.00 0.00 41.50 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.574780 GCCTTAGACGGCGCTTTT 58.425 55.556 6.90 0.00 40.79 2.27
19 20 1.873863 GCCTTAGACGGCGCTTTTT 59.126 52.632 6.90 0.00 40.79 1.94
20 21 0.454452 GCCTTAGACGGCGCTTTTTG 60.454 55.000 6.90 0.00 40.79 2.44
21 22 0.168128 CCTTAGACGGCGCTTTTTGG 59.832 55.000 6.90 0.00 0.00 3.28
22 23 0.454452 CTTAGACGGCGCTTTTTGGC 60.454 55.000 6.90 0.00 0.00 4.52
31 32 1.581447 GCTTTTTGGCGTCCTGAGG 59.419 57.895 0.00 0.00 0.00 3.86
32 33 1.866853 GCTTTTTGGCGTCCTGAGGG 61.867 60.000 0.00 0.00 0.00 4.30
33 34 1.866853 CTTTTTGGCGTCCTGAGGGC 61.867 60.000 0.00 0.00 41.37 5.19
38 39 4.509737 GCGTCCTGAGGGCCGTAC 62.510 72.222 0.00 0.00 0.00 3.67
39 40 4.189188 CGTCCTGAGGGCCGTACG 62.189 72.222 8.69 8.69 0.00 3.67
40 41 3.834799 GTCCTGAGGGCCGTACGG 61.835 72.222 30.06 30.06 38.57 4.02
51 52 3.900892 CGTACGGCGGGAGATGCT 61.901 66.667 13.24 0.00 36.85 3.79
52 53 2.027751 GTACGGCGGGAGATGCTC 59.972 66.667 13.24 0.00 0.00 4.26
53 54 2.123854 TACGGCGGGAGATGCTCT 60.124 61.111 13.24 0.00 0.00 4.09
54 55 1.756950 TACGGCGGGAGATGCTCTT 60.757 57.895 13.24 0.00 0.00 2.85
55 56 0.466739 TACGGCGGGAGATGCTCTTA 60.467 55.000 13.24 0.00 0.00 2.10
56 57 1.300233 CGGCGGGAGATGCTCTTAC 60.300 63.158 0.00 0.00 0.00 2.34
57 58 1.739338 CGGCGGGAGATGCTCTTACT 61.739 60.000 0.00 0.00 0.00 2.24
58 59 0.032815 GGCGGGAGATGCTCTTACTC 59.967 60.000 0.00 0.00 0.00 2.59
59 60 1.036707 GCGGGAGATGCTCTTACTCT 58.963 55.000 0.00 0.00 0.00 3.24
60 61 1.269517 GCGGGAGATGCTCTTACTCTG 60.270 57.143 0.00 0.00 0.00 3.35
61 62 1.339610 CGGGAGATGCTCTTACTCTGG 59.660 57.143 0.00 0.00 0.00 3.86
62 63 1.691434 GGGAGATGCTCTTACTCTGGG 59.309 57.143 0.00 0.00 0.00 4.45
63 64 1.691434 GGAGATGCTCTTACTCTGGGG 59.309 57.143 0.00 0.00 0.00 4.96
64 65 2.393646 GAGATGCTCTTACTCTGGGGT 58.606 52.381 0.00 0.00 0.00 4.95
65 66 3.567397 GAGATGCTCTTACTCTGGGGTA 58.433 50.000 0.00 0.00 0.00 3.69
82 83 5.337788 TGGGGTAGTAGCATGGAAATTTTT 58.662 37.500 1.13 0.00 0.00 1.94
83 84 5.420739 TGGGGTAGTAGCATGGAAATTTTTC 59.579 40.000 1.13 0.00 36.46 2.29
84 85 5.449999 GGGGTAGTAGCATGGAAATTTTTCG 60.450 44.000 1.13 0.00 38.06 3.46
89 93 2.827921 AGCATGGAAATTTTTCGCCTCT 59.172 40.909 0.00 0.00 38.06 3.69
122 126 1.666189 GCATCGGTTTTCAGCTCCTAC 59.334 52.381 0.00 0.00 0.00 3.18
210 221 3.535561 CAGTCCAAAGTAGCATAGTGGG 58.464 50.000 0.00 0.00 0.00 4.61
211 222 3.197766 CAGTCCAAAGTAGCATAGTGGGA 59.802 47.826 0.00 0.00 0.00 4.37
212 223 3.452627 AGTCCAAAGTAGCATAGTGGGAG 59.547 47.826 0.00 0.00 31.35 4.30
213 224 2.170607 TCCAAAGTAGCATAGTGGGAGC 59.829 50.000 0.00 0.00 0.00 4.70
221 238 2.570752 AGCATAGTGGGAGCATAGGATG 59.429 50.000 0.00 0.00 0.00 3.51
230 247 0.548031 AGCATAGGATGGTGGTGGTG 59.452 55.000 0.00 0.00 39.92 4.17
264 281 0.984230 TTAGACCAGTCCCAAGCCAG 59.016 55.000 0.00 0.00 0.00 4.85
289 306 2.941025 TGGCCAGGGAAGGAAGGG 60.941 66.667 0.00 0.00 0.00 3.95
312 329 3.495753 AGCAAGCAAACAAAAGCATTAGC 59.504 39.130 0.00 0.00 42.56 3.09
361 378 1.061566 CAGCTACACATGCACATCACG 59.938 52.381 0.00 0.00 0.00 4.35
422 446 0.537188 TGTCGCTTCCTCTGAATCCC 59.463 55.000 0.00 0.00 0.00 3.85
452 476 2.866015 AGCCAGGCCCCCTTTCTT 60.866 61.111 8.22 0.00 0.00 2.52
453 477 2.120496 GCCAGGCCCCCTTTCTTT 59.880 61.111 0.00 0.00 0.00 2.52
454 478 1.984570 GCCAGGCCCCCTTTCTTTC 60.985 63.158 0.00 0.00 0.00 2.62
458 482 1.000486 GGCCCCCTTTCTTTCTCCC 60.000 63.158 0.00 0.00 0.00 4.30
459 483 1.510431 GGCCCCCTTTCTTTCTCCCT 61.510 60.000 0.00 0.00 0.00 4.20
467 498 0.800239 TTCTTTCTCCCTCCTCCCCT 59.200 55.000 0.00 0.00 0.00 4.79
469 500 0.692756 CTTTCTCCCTCCTCCCCTCC 60.693 65.000 0.00 0.00 0.00 4.30
470 501 1.162951 TTTCTCCCTCCTCCCCTCCT 61.163 60.000 0.00 0.00 0.00 3.69
506 537 0.902531 TCTTTTCACCTCTAGGCCCG 59.097 55.000 0.00 0.00 39.32 6.13
534 571 1.645402 CCCAATCCCCCAACTCCGAT 61.645 60.000 0.00 0.00 0.00 4.18
572 609 1.098712 AGATCTCCGCACCGTCTCTC 61.099 60.000 0.00 0.00 0.00 3.20
574 611 3.827898 CTCCGCACCGTCTCTCCC 61.828 72.222 0.00 0.00 0.00 4.30
638 683 1.893919 GAGCCGGGCAGAGAGTCTTT 61.894 60.000 23.09 0.00 0.00 2.52
640 685 1.674057 CCGGGCAGAGAGTCTTTGT 59.326 57.895 11.96 0.00 0.00 2.83
667 712 0.753262 CCGGTTCATGAGTAGGGAGG 59.247 60.000 0.00 0.00 0.00 4.30
751 796 0.749454 ATTTGTCCCTCATGGCTCGC 60.749 55.000 0.00 0.00 0.00 5.03
841 886 4.084328 TCAAGTTTTGGTGTTGCGTTTTTG 60.084 37.500 0.00 0.00 0.00 2.44
842 887 3.394719 AGTTTTGGTGTTGCGTTTTTGT 58.605 36.364 0.00 0.00 0.00 2.83
843 888 3.430556 AGTTTTGGTGTTGCGTTTTTGTC 59.569 39.130 0.00 0.00 0.00 3.18
844 889 3.305398 TTTGGTGTTGCGTTTTTGTCT 57.695 38.095 0.00 0.00 0.00 3.41
887 934 5.741388 TTTGAGTTTTTCTGTGAGAGAGC 57.259 39.130 0.00 0.00 30.18 4.09
968 1015 3.181510 CGTGAGGAATCGGGTTTGAATTC 60.182 47.826 0.00 0.00 0.00 2.17
1029 1079 4.467107 GGGTCCTCCTCCTCCGCT 62.467 72.222 0.00 0.00 0.00 5.52
1199 1252 1.833630 AGGTGAGATGAGATTGCGGAA 59.166 47.619 0.00 0.00 0.00 4.30
1233 1293 5.458891 CATTTGCTAATTGCTATGGCTCTC 58.541 41.667 1.68 0.00 43.37 3.20
1275 1335 6.738114 TCCTCAGCTTTATTTTGTGTCTTTG 58.262 36.000 0.00 0.00 0.00 2.77
1310 1370 2.030363 CGAGCAGAGATTCTTATCGCCT 60.030 50.000 0.00 0.00 35.85 5.52
1385 1445 2.042843 AGGCCTCTCCTGGTACGG 60.043 66.667 0.00 0.00 45.54 4.02
1406 1469 4.760204 CGGTACATCTTTCCTTCACCTTTT 59.240 41.667 0.00 0.00 0.00 2.27
1407 1470 5.935789 CGGTACATCTTTCCTTCACCTTTTA 59.064 40.000 0.00 0.00 0.00 1.52
1408 1471 6.128363 CGGTACATCTTTCCTTCACCTTTTAC 60.128 42.308 0.00 0.00 0.00 2.01
1445 1508 5.525745 TGCAGTAAGTTTCGTTCTGAATTCA 59.474 36.000 8.12 8.12 36.22 2.57
1446 1509 6.204688 TGCAGTAAGTTTCGTTCTGAATTCAT 59.795 34.615 8.96 0.00 36.22 2.57
1447 1510 7.386573 TGCAGTAAGTTTCGTTCTGAATTCATA 59.613 33.333 8.96 0.00 36.22 2.15
1448 1511 7.900352 GCAGTAAGTTTCGTTCTGAATTCATAG 59.100 37.037 8.96 0.00 36.22 2.23
1468 1871 7.796054 TCATAGTGATTTTTCCCCAACAAAAA 58.204 30.769 0.00 0.00 37.18 1.94
1477 1880 2.978278 TCCCCAACAAAAATTGCCTCAT 59.022 40.909 0.00 0.00 0.00 2.90
1513 1916 4.262851 GCTTTTCCCCAAGCCAAGATTTTA 60.263 41.667 0.00 0.00 43.03 1.52
1514 1917 4.882842 TTTCCCCAAGCCAAGATTTTAC 57.117 40.909 0.00 0.00 0.00 2.01
1540 1943 5.589855 CCCTTGGTTTTGCATTTTCTTTTCT 59.410 36.000 0.00 0.00 0.00 2.52
1541 1944 6.238456 CCCTTGGTTTTGCATTTTCTTTTCTC 60.238 38.462 0.00 0.00 0.00 2.87
1545 1948 7.973601 TGGTTTTGCATTTTCTTTTCTCTTTC 58.026 30.769 0.00 0.00 0.00 2.62
1617 2111 9.941325 AATTGTTTACTTTGCATCCATGATTTA 57.059 25.926 0.00 0.00 0.00 1.40
1664 2159 2.489722 GTGGTTCTCCCTTTTCATCTGC 59.510 50.000 0.00 0.00 0.00 4.26
1702 2197 2.006873 TCCCAATGATTTTCCCCCAGA 58.993 47.619 0.00 0.00 0.00 3.86
1742 2237 1.070601 GCATTTTGCACACCTTTCCCT 59.929 47.619 0.00 0.00 44.26 4.20
1813 2308 5.991328 TGTATGCTAAATTGCTAGCTCAC 57.009 39.130 17.23 8.09 43.96 3.51
1816 2311 1.599542 GCTAAATTGCTAGCTCACCCG 59.400 52.381 17.23 1.93 41.01 5.28
1824 2319 2.897641 CTAGCTCACCCGTGCTGCTC 62.898 65.000 15.03 0.00 41.86 4.26
1841 2336 1.805871 GCTCTCCTCCAGCTTGATTCG 60.806 57.143 0.00 0.00 33.75 3.34
1865 2360 5.476752 CAGACTATGCAAGGAGTAAAAGC 57.523 43.478 0.00 0.00 0.00 3.51
1922 2417 2.886523 CCAAGACAGCAATTCCAGTGAA 59.113 45.455 0.00 0.00 34.33 3.18
2006 2501 2.417558 AAAGGTCAGCCAGAGCCACC 62.418 60.000 2.68 0.00 45.87 4.61
2018 2513 3.379445 GCCACCGACTCCTCCGAA 61.379 66.667 0.00 0.00 0.00 4.30
2119 2623 1.152819 CAGGGCAGGTCATGGATGG 60.153 63.158 0.00 0.00 0.00 3.51
2124 2628 0.475475 GCAGGTCATGGATGGATGGA 59.525 55.000 0.00 0.00 0.00 3.41
2174 2678 2.154139 ACAGGCATTGTGGTCAGGA 58.846 52.632 0.00 0.00 38.99 3.86
2243 2747 1.039856 TTTCAAGCAGGAACAAGGCC 58.960 50.000 0.00 0.00 0.00 5.19
2247 2751 4.660938 GCAGGAACAAGGCCCGGT 62.661 66.667 0.00 0.00 0.00 5.28
2263 2767 1.016130 CGGTTGATCGAAGCAGCAGT 61.016 55.000 0.00 0.00 31.92 4.40
2361 2868 0.108804 CGATGGTGTGGCGACTACTT 60.109 55.000 0.00 0.00 0.00 2.24
2408 2915 0.940126 CGCCGGATCAATTCTCAAGG 59.060 55.000 5.05 0.00 0.00 3.61
2417 2924 3.711863 TCAATTCTCAAGGGAAATGGGG 58.288 45.455 0.00 0.00 29.87 4.96
2418 2925 3.336391 TCAATTCTCAAGGGAAATGGGGA 59.664 43.478 0.00 0.00 29.87 4.81
2425 2932 2.236893 CAAGGGAAATGGGGAATGTTGG 59.763 50.000 0.00 0.00 0.00 3.77
2475 2982 0.392729 AGCTGCCTCTCTGCACAATC 60.393 55.000 0.00 0.00 41.48 2.67
2514 3021 3.745458 GTCTGAAGAGAACTGCAAGAAGG 59.255 47.826 0.00 0.00 37.43 3.46
2581 3088 3.087370 ACCTGGAGGAAACATTAAGGC 57.913 47.619 0.00 0.00 38.94 4.35
2603 3110 0.679505 TGCCTGTAAGCAACTCGAGT 59.320 50.000 13.58 13.58 40.56 4.18
2649 3156 1.589803 TGCGATGATCCTCAATGCTG 58.410 50.000 0.00 0.00 33.49 4.41
2692 3199 1.071605 CGAAAAGTTCAGCCGAGGAG 58.928 55.000 0.00 0.00 0.00 3.69
2695 3202 3.941657 AAGTTCAGCCGAGGAGCGC 62.942 63.158 0.00 0.00 39.11 5.92
2764 3271 0.097674 CAGAACGCATTGCCTACAGC 59.902 55.000 2.41 0.00 44.14 4.40
2807 3314 6.147985 CACATCATATGATTCAGAGGCAGAAG 59.852 42.308 15.74 2.77 31.21 2.85
2858 3365 3.321968 GCACAGGGAAGGATTTTGTTTCT 59.678 43.478 0.00 0.00 0.00 2.52
2861 3368 5.754890 CACAGGGAAGGATTTTGTTTCTTTG 59.245 40.000 0.00 0.00 0.00 2.77
2942 3449 2.400798 CTGCCACGTAGCAATGCG 59.599 61.111 10.49 0.00 43.52 4.73
2959 3466 0.514691 GCGCAGAACAAGAACCTGAG 59.485 55.000 0.30 0.00 0.00 3.35
2988 3495 1.219664 CATCGAACCGGTGGCCTAA 59.780 57.895 8.52 0.00 34.00 2.69
2990 3497 1.968050 ATCGAACCGGTGGCCTAAGG 61.968 60.000 8.52 6.87 0.00 2.69
3035 3542 1.962807 CCAAGGACTGCATCACCAAAA 59.037 47.619 0.00 0.00 0.00 2.44
3036 3543 2.364970 CCAAGGACTGCATCACCAAAAA 59.635 45.455 0.00 0.00 0.00 1.94
3219 3726 1.338136 ACCGATGAAGGCTACCCCTG 61.338 60.000 0.00 0.00 45.62 4.45
3225 3732 1.273609 TGAAGGCTACCCCTGCTTCTA 60.274 52.381 0.00 0.00 45.62 2.10
3231 3738 1.000283 CTACCCCTGCTTCTATGCTCG 60.000 57.143 0.00 0.00 0.00 5.03
3392 3899 7.118496 AGAATCAGTCTGGTTTAATCGAGAT 57.882 36.000 0.00 0.00 34.29 2.75
3423 3930 4.718774 AGAACAGAGATATTCCTGGAAGCA 59.281 41.667 15.34 5.67 34.85 3.91
3427 3934 4.344679 CAGAGATATTCCTGGAAGCAGAGT 59.655 45.833 15.34 0.00 0.00 3.24
3428 3935 5.538053 CAGAGATATTCCTGGAAGCAGAGTA 59.462 44.000 15.34 1.57 0.00 2.59
3438 3945 4.417437 TGGAAGCAGAGTAAGAGTAACCT 58.583 43.478 0.00 0.00 0.00 3.50
3453 3960 6.335022 AGAGTAACCTCTTCATGGTCTGAGG 61.335 48.000 16.76 16.76 46.08 3.86
3458 3965 1.202330 CTTCATGGTCTGAGGAGGCT 58.798 55.000 0.00 0.00 32.85 4.58
3467 3974 2.100584 GTCTGAGGAGGCTAGTGATGTG 59.899 54.545 0.00 0.00 0.00 3.21
3478 3985 1.518572 GTGATGTGCCCGTCCTACG 60.519 63.158 0.00 0.00 42.11 3.51
3536 4043 1.134580 AGTCTGATGCATGTCTTCGGG 60.135 52.381 2.46 0.00 0.00 5.14
3554 4061 1.202663 GGGGAGCTTCCTAATTCCGTC 60.203 57.143 11.94 0.00 36.57 4.79
3561 4068 3.846360 CTTCCTAATTCCGTCGAGTTGT 58.154 45.455 0.00 0.00 0.00 3.32
3581 4088 7.547227 AGTTGTGTGAAACTCATAAAAAGCTT 58.453 30.769 0.00 0.00 40.36 3.74
3596 4103 9.271828 CATAAAAAGCTTGAGGTTGGTAAATTT 57.728 29.630 0.00 0.00 35.72 1.82
3614 4121 0.693049 TTTGCTCTTCCCTGTCCTCC 59.307 55.000 0.00 0.00 0.00 4.30
3635 4142 6.716628 CCTCCACCATGTATGTTAATATTGCT 59.283 38.462 0.00 0.00 0.00 3.91
3676 4183 8.783833 ATATAGATCACCATAACATCAAGCAC 57.216 34.615 0.00 0.00 0.00 4.40
3695 4202 5.417811 AGCACTCTGTTTATCTGATGACAG 58.582 41.667 20.76 20.76 44.66 3.51
3704 4211 0.251354 TCTGATGACAGCTCCTTGGC 59.749 55.000 0.00 0.00 43.17 4.52
3755 4262 6.619744 AGCTAATGATACATCTCGATCTGTG 58.380 40.000 9.57 0.00 0.00 3.66
3774 4281 1.672356 CCTGGAGGCAACCGACAAG 60.672 63.158 0.00 0.00 37.17 3.16
3781 4288 0.955919 GGCAACCGACAAGGAGGAAG 60.956 60.000 0.00 0.00 45.00 3.46
3887 4394 8.902540 TTTGAGCATGTTCTAGTTTCTTTCTA 57.097 30.769 11.09 0.00 0.00 2.10
3894 4401 7.925703 TGTTCTAGTTTCTTTCTACACTTCG 57.074 36.000 0.00 0.00 0.00 3.79
3895 4402 7.486647 TGTTCTAGTTTCTTTCTACACTTCGT 58.513 34.615 0.00 0.00 0.00 3.85
3896 4403 7.977853 TGTTCTAGTTTCTTTCTACACTTCGTT 59.022 33.333 0.00 0.00 0.00 3.85
3897 4404 8.815189 GTTCTAGTTTCTTTCTACACTTCGTTT 58.185 33.333 0.00 0.00 0.00 3.60
3898 4405 8.348983 TCTAGTTTCTTTCTACACTTCGTTTG 57.651 34.615 0.00 0.00 0.00 2.93
3899 4406 6.980051 AGTTTCTTTCTACACTTCGTTTGT 57.020 33.333 0.00 0.00 0.00 2.83
3900 4407 9.241317 CTAGTTTCTTTCTACACTTCGTTTGTA 57.759 33.333 0.00 0.00 0.00 2.41
3901 4408 7.903062 AGTTTCTTTCTACACTTCGTTTGTAC 58.097 34.615 0.00 0.00 0.00 2.90
3902 4409 7.546667 AGTTTCTTTCTACACTTCGTTTGTACA 59.453 33.333 0.00 0.00 0.00 2.90
4001 4509 7.624360 TCGGAAAATGCATAGTTCAAATAGT 57.376 32.000 19.36 0.00 0.00 2.12
4002 4510 8.725405 TCGGAAAATGCATAGTTCAAATAGTA 57.275 30.769 19.36 0.95 0.00 1.82
4016 4524 7.394923 AGTTCAAATAGTAGACTGAGTAGCACT 59.605 37.037 0.00 0.00 0.00 4.40
4272 4781 0.317436 GACCGTCGATCTGCTGCTAG 60.317 60.000 0.00 0.00 0.00 3.42
4309 4818 0.395724 GGCCTACACCATTCCAAGGG 60.396 60.000 0.00 0.00 35.59 3.95
4311 4820 1.295020 CCTACACCATTCCAAGGGGA 58.705 55.000 0.00 0.00 43.03 4.81
4362 4871 3.077556 CCACCCTGACCCCGAGAG 61.078 72.222 0.00 0.00 0.00 3.20
4374 4883 2.997315 CGAGAGGCTCCACCACCA 60.997 66.667 11.71 0.00 43.14 4.17
4375 4884 2.665603 GAGAGGCTCCACCACCAC 59.334 66.667 11.71 0.00 43.14 4.16
4397 4906 3.710722 AGCAGACCCAAGGCCTCG 61.711 66.667 5.23 0.00 0.00 4.63
4405 4914 4.521062 CAAGGCCTCGGGAGCGAG 62.521 72.222 5.23 0.00 35.91 5.03
4478 4987 3.821055 GCCGAGCTCTGCGACTCT 61.821 66.667 14.62 0.00 0.00 3.24
4730 5242 3.260483 GACATGCTCAGAGCGGCG 61.260 66.667 17.81 0.51 46.26 6.46
4749 5261 2.406130 CGGCCGTAAACTTGTAACAGA 58.594 47.619 19.50 0.00 0.00 3.41
4750 5262 2.410730 CGGCCGTAAACTTGTAACAGAG 59.589 50.000 19.50 0.00 0.00 3.35
4753 5268 4.151867 GGCCGTAAACTTGTAACAGAGAAG 59.848 45.833 0.00 0.00 34.56 2.85
4784 5299 4.454728 TTCGTGGTAGTGGTATTGGTAC 57.545 45.455 0.00 0.00 0.00 3.34
4789 5304 3.295973 GGTAGTGGTATTGGTACGGGTA 58.704 50.000 0.00 0.00 0.00 3.69
4790 5305 3.897505 GGTAGTGGTATTGGTACGGGTAT 59.102 47.826 0.00 0.00 0.00 2.73
4791 5306 5.076873 GGTAGTGGTATTGGTACGGGTATA 58.923 45.833 0.00 0.00 0.00 1.47
4792 5307 5.183904 GGTAGTGGTATTGGTACGGGTATAG 59.816 48.000 0.00 0.00 0.00 1.31
4793 5308 4.154942 AGTGGTATTGGTACGGGTATAGG 58.845 47.826 0.00 0.00 0.00 2.57
4794 5309 4.140947 AGTGGTATTGGTACGGGTATAGGA 60.141 45.833 0.00 0.00 0.00 2.94
4795 5310 4.219288 GTGGTATTGGTACGGGTATAGGAG 59.781 50.000 0.00 0.00 0.00 3.69
4796 5311 3.766051 GGTATTGGTACGGGTATAGGAGG 59.234 52.174 0.00 0.00 0.00 4.30
4797 5312 3.909427 ATTGGTACGGGTATAGGAGGA 57.091 47.619 0.00 0.00 0.00 3.71
4798 5313 2.965671 TGGTACGGGTATAGGAGGAG 57.034 55.000 0.00 0.00 0.00 3.69
4799 5314 2.138542 TGGTACGGGTATAGGAGGAGT 58.861 52.381 0.00 0.00 0.00 3.85
4800 5315 2.515429 TGGTACGGGTATAGGAGGAGTT 59.485 50.000 0.00 0.00 0.00 3.01
4801 5316 2.889678 GGTACGGGTATAGGAGGAGTTG 59.110 54.545 0.00 0.00 0.00 3.16
4802 5317 2.842645 ACGGGTATAGGAGGAGTTGT 57.157 50.000 0.00 0.00 0.00 3.32
4803 5318 2.385803 ACGGGTATAGGAGGAGTTGTG 58.614 52.381 0.00 0.00 0.00 3.33
4813 5344 2.569404 GGAGGAGTTGTGATGAAGAGGT 59.431 50.000 0.00 0.00 0.00 3.85
4847 5378 1.236616 TGCGGTGACATTTGCAGAGG 61.237 55.000 0.00 0.00 32.73 3.69
4927 5480 1.035139 TCCGGACCCTAATACGCTTC 58.965 55.000 0.00 0.00 0.00 3.86
4930 5483 1.343465 CGGACCCTAATACGCTTCCAT 59.657 52.381 0.00 0.00 0.00 3.41
4931 5484 2.224209 CGGACCCTAATACGCTTCCATT 60.224 50.000 0.00 0.00 0.00 3.16
4939 5492 6.544564 CCCTAATACGCTTCCATTAAAGGAAA 59.455 38.462 12.91 0.00 46.44 3.13
4940 5493 7.255139 CCCTAATACGCTTCCATTAAAGGAAAG 60.255 40.741 12.91 11.83 46.44 2.62
4941 5494 6.451064 AATACGCTTCCATTAAAGGAAAGG 57.549 37.500 12.91 9.88 46.44 3.11
4943 5496 4.403734 ACGCTTCCATTAAAGGAAAGGAA 58.596 39.130 12.91 3.87 46.44 3.36
4950 5511 4.332828 CATTAAAGGAAAGGAACCCGTCT 58.667 43.478 0.00 0.00 0.00 4.18
4953 5514 4.442401 AAAGGAAAGGAACCCGTCTTAA 57.558 40.909 0.00 0.00 0.00 1.85
5022 5583 3.254654 CGTCCGGTGCGTGCATAG 61.255 66.667 0.00 0.00 0.00 2.23
5023 5584 3.564027 GTCCGGTGCGTGCATAGC 61.564 66.667 0.00 9.79 0.00 2.97
5024 5585 4.075854 TCCGGTGCGTGCATAGCA 62.076 61.111 14.56 14.56 42.99 3.49
5025 5586 2.896854 CCGGTGCGTGCATAGCAT 60.897 61.111 20.06 0.00 46.96 3.79
5026 5587 1.594021 CCGGTGCGTGCATAGCATA 60.594 57.895 20.06 0.00 46.96 3.14
5068 5634 0.318441 TCGATTGCCGATCCATCTCC 59.682 55.000 0.00 0.00 43.23 3.71
5070 5636 0.034059 GATTGCCGATCCATCTCCGT 59.966 55.000 0.00 0.00 0.00 4.69
5179 6879 1.078497 TGGCCACCAAGTATCAGCG 60.078 57.895 0.00 0.00 0.00 5.18
5201 6901 2.110006 GAGATGGCGGAGGAAGGC 59.890 66.667 0.00 0.00 0.00 4.35
5337 7243 8.609478 TTTTGTTCTTTCTCAAACGTGTATTC 57.391 30.769 0.00 0.00 34.05 1.75
5341 7247 8.761497 TGTTCTTTCTCAAACGTGTATTCTTAG 58.239 33.333 0.00 0.00 0.00 2.18
5382 7288 6.631971 TCAGCTATGTTTTGTGAATTGTGA 57.368 33.333 0.00 0.00 0.00 3.58
5415 7321 8.729805 ATTTTGTTTTCAGTTTGCCTAATTCA 57.270 26.923 0.00 0.00 0.00 2.57
5416 7322 7.532682 TTTGTTTTCAGTTTGCCTAATTCAC 57.467 32.000 0.00 0.00 0.00 3.18
5417 7323 6.214191 TGTTTTCAGTTTGCCTAATTCACA 57.786 33.333 0.00 0.00 0.00 3.58
5418 7324 6.815089 TGTTTTCAGTTTGCCTAATTCACAT 58.185 32.000 0.00 0.00 0.00 3.21
5419 7325 6.922957 TGTTTTCAGTTTGCCTAATTCACATC 59.077 34.615 0.00 0.00 0.00 3.06
5420 7326 6.899393 TTTCAGTTTGCCTAATTCACATCT 57.101 33.333 0.00 0.00 0.00 2.90
5421 7327 7.994425 TTTCAGTTTGCCTAATTCACATCTA 57.006 32.000 0.00 0.00 0.00 1.98
5422 7328 7.615582 TTCAGTTTGCCTAATTCACATCTAG 57.384 36.000 0.00 0.00 0.00 2.43
5423 7329 6.946340 TCAGTTTGCCTAATTCACATCTAGA 58.054 36.000 0.00 0.00 0.00 2.43
5424 7330 7.568349 TCAGTTTGCCTAATTCACATCTAGAT 58.432 34.615 0.00 0.00 0.00 1.98
5425 7331 7.496920 TCAGTTTGCCTAATTCACATCTAGATG 59.503 37.037 27.63 27.63 44.15 2.90
5457 7363 9.587772 TTTAAGATGTTACATCTAAGCTCTCAC 57.412 33.333 25.68 0.00 0.00 3.51
5458 7364 6.782082 AGATGTTACATCTAAGCTCTCACA 57.218 37.500 24.46 0.00 0.00 3.58
5459 7365 7.175347 AGATGTTACATCTAAGCTCTCACAA 57.825 36.000 24.46 0.00 0.00 3.33
5460 7366 7.615403 AGATGTTACATCTAAGCTCTCACAAA 58.385 34.615 24.46 0.00 0.00 2.83
5461 7367 8.263640 AGATGTTACATCTAAGCTCTCACAAAT 58.736 33.333 24.46 0.00 0.00 2.32
5462 7368 9.534565 GATGTTACATCTAAGCTCTCACAAATA 57.465 33.333 17.19 0.00 0.00 1.40
5463 7369 8.703604 TGTTACATCTAAGCTCTCACAAATAC 57.296 34.615 0.00 0.00 0.00 1.89
5464 7370 8.311109 TGTTACATCTAAGCTCTCACAAATACA 58.689 33.333 0.00 0.00 0.00 2.29
5465 7371 8.596380 GTTACATCTAAGCTCTCACAAATACAC 58.404 37.037 0.00 0.00 0.00 2.90
5466 7372 6.701340 ACATCTAAGCTCTCACAAATACACA 58.299 36.000 0.00 0.00 0.00 3.72
5467 7373 7.161404 ACATCTAAGCTCTCACAAATACACAA 58.839 34.615 0.00 0.00 0.00 3.33
5468 7374 7.118390 ACATCTAAGCTCTCACAAATACACAAC 59.882 37.037 0.00 0.00 0.00 3.32
5469 7375 6.521162 TCTAAGCTCTCACAAATACACAACA 58.479 36.000 0.00 0.00 0.00 3.33
5470 7376 6.989759 TCTAAGCTCTCACAAATACACAACAA 59.010 34.615 0.00 0.00 0.00 2.83
5471 7377 5.424121 AGCTCTCACAAATACACAACAAC 57.576 39.130 0.00 0.00 0.00 3.32
5472 7378 4.881273 AGCTCTCACAAATACACAACAACA 59.119 37.500 0.00 0.00 0.00 3.33
5473 7379 5.356751 AGCTCTCACAAATACACAACAACAA 59.643 36.000 0.00 0.00 0.00 2.83
5474 7380 6.033341 GCTCTCACAAATACACAACAACAAA 58.967 36.000 0.00 0.00 0.00 2.83
5475 7381 6.197096 GCTCTCACAAATACACAACAACAAAG 59.803 38.462 0.00 0.00 0.00 2.77
5476 7382 7.384439 TCTCACAAATACACAACAACAAAGA 57.616 32.000 0.00 0.00 0.00 2.52
5477 7383 7.821652 TCTCACAAATACACAACAACAAAGAA 58.178 30.769 0.00 0.00 0.00 2.52
5478 7384 8.465999 TCTCACAAATACACAACAACAAAGAAT 58.534 29.630 0.00 0.00 0.00 2.40
5479 7385 8.994429 TCACAAATACACAACAACAAAGAATT 57.006 26.923 0.00 0.00 0.00 2.17
5528 7434 9.541884 AAAAATATACCACAAACATAGTCCCTT 57.458 29.630 0.00 0.00 0.00 3.95
5529 7435 9.541884 AAAATATACCACAAACATAGTCCCTTT 57.458 29.630 0.00 0.00 0.00 3.11
5530 7436 9.541884 AAATATACCACAAACATAGTCCCTTTT 57.458 29.630 0.00 0.00 0.00 2.27
5531 7437 6.834168 ATACCACAAACATAGTCCCTTTTG 57.166 37.500 0.00 0.00 35.49 2.44
5532 7438 4.542697 ACCACAAACATAGTCCCTTTTGT 58.457 39.130 0.00 0.00 41.69 2.83
5533 7439 4.959839 ACCACAAACATAGTCCCTTTTGTT 59.040 37.500 0.00 0.00 39.56 2.83
5534 7440 5.423931 ACCACAAACATAGTCCCTTTTGTTT 59.576 36.000 0.00 0.00 39.56 2.83
5535 7441 6.070481 ACCACAAACATAGTCCCTTTTGTTTT 60.070 34.615 0.00 0.00 39.56 2.43
5536 7442 6.821160 CCACAAACATAGTCCCTTTTGTTTTT 59.179 34.615 0.00 0.00 39.56 1.94
5568 7474 9.832445 GGATACTTATATTTTGTTGGACAGAGA 57.168 33.333 0.00 0.00 0.00 3.10
5572 7478 9.574516 ACTTATATTTTGTTGGACAGAGAAACT 57.425 29.630 0.00 0.00 0.00 2.66
5576 7482 6.582677 TTTTGTTGGACAGAGAAACTTTCA 57.417 33.333 4.34 0.00 0.00 2.69
5577 7483 5.560966 TTGTTGGACAGAGAAACTTTCAC 57.439 39.130 4.34 0.00 0.00 3.18
5578 7484 4.584874 TGTTGGACAGAGAAACTTTCACA 58.415 39.130 4.34 0.00 0.00 3.58
5579 7485 5.007034 TGTTGGACAGAGAAACTTTCACAA 58.993 37.500 4.34 0.00 0.00 3.33
5580 7486 5.106317 TGTTGGACAGAGAAACTTTCACAAC 60.106 40.000 4.34 0.00 37.21 3.32
5581 7487 4.584874 TGGACAGAGAAACTTTCACAACA 58.415 39.130 4.34 0.00 0.00 3.33
5582 7488 5.007034 TGGACAGAGAAACTTTCACAACAA 58.993 37.500 4.34 0.00 0.00 2.83
5583 7489 5.652014 TGGACAGAGAAACTTTCACAACAAT 59.348 36.000 4.34 0.00 0.00 2.71
5584 7490 6.826231 TGGACAGAGAAACTTTCACAACAATA 59.174 34.615 4.34 0.00 0.00 1.90
5585 7491 7.338196 TGGACAGAGAAACTTTCACAACAATAA 59.662 33.333 4.34 0.00 0.00 1.40
5586 7492 8.188139 GGACAGAGAAACTTTCACAACAATAAA 58.812 33.333 4.34 0.00 0.00 1.40
5587 7493 8.911247 ACAGAGAAACTTTCACAACAATAAAC 57.089 30.769 4.34 0.00 0.00 2.01
5588 7494 8.739972 ACAGAGAAACTTTCACAACAATAAACT 58.260 29.630 4.34 0.00 0.00 2.66
5591 7497 9.170584 GAGAAACTTTCACAACAATAAACTAGC 57.829 33.333 4.34 0.00 0.00 3.42
5592 7498 7.855904 AGAAACTTTCACAACAATAAACTAGCG 59.144 33.333 4.34 0.00 0.00 4.26
5593 7499 6.613755 ACTTTCACAACAATAAACTAGCGT 57.386 33.333 0.00 0.00 0.00 5.07
5594 7500 6.427150 ACTTTCACAACAATAAACTAGCGTG 58.573 36.000 0.00 0.00 0.00 5.34
5595 7501 6.259167 ACTTTCACAACAATAAACTAGCGTGA 59.741 34.615 0.00 0.00 0.00 4.35
5596 7502 6.795098 TTCACAACAATAAACTAGCGTGAT 57.205 33.333 0.00 0.00 32.65 3.06
5597 7503 6.403333 TCACAACAATAAACTAGCGTGATC 57.597 37.500 0.00 0.00 0.00 2.92
5598 7504 5.929415 TCACAACAATAAACTAGCGTGATCA 59.071 36.000 0.00 0.00 0.00 2.92
5599 7505 6.090763 TCACAACAATAAACTAGCGTGATCAG 59.909 38.462 0.00 0.00 0.00 2.90
5600 7506 5.351465 ACAACAATAAACTAGCGTGATCAGG 59.649 40.000 11.07 11.07 0.00 3.86
5601 7507 5.339008 ACAATAAACTAGCGTGATCAGGA 57.661 39.130 19.26 0.00 0.00 3.86
5602 7508 5.352284 ACAATAAACTAGCGTGATCAGGAG 58.648 41.667 19.26 10.57 0.00 3.69
5603 7509 5.127194 ACAATAAACTAGCGTGATCAGGAGA 59.873 40.000 19.26 4.73 0.00 3.71
5604 7510 3.512033 AAACTAGCGTGATCAGGAGAC 57.488 47.619 19.26 1.68 0.00 3.36
5605 7511 2.428544 ACTAGCGTGATCAGGAGACT 57.571 50.000 19.26 9.07 46.44 3.24
5620 7526 5.441718 AGGAGACTGCAATTATCAGGAAA 57.558 39.130 10.49 0.00 41.13 3.13
5621 7527 5.189180 AGGAGACTGCAATTATCAGGAAAC 58.811 41.667 10.49 1.18 41.13 2.78
5622 7528 5.045286 AGGAGACTGCAATTATCAGGAAACT 60.045 40.000 10.49 5.45 40.72 2.66
5635 7541 3.753294 AGGAAACTGTGTGTGTCTAGG 57.247 47.619 0.00 0.00 41.13 3.02
5636 7542 2.368875 AGGAAACTGTGTGTGTCTAGGG 59.631 50.000 0.00 0.00 41.13 3.53
5637 7543 2.143925 GAAACTGTGTGTGTCTAGGGC 58.856 52.381 0.00 0.00 30.29 5.19
5638 7544 1.128200 AACTGTGTGTGTCTAGGGCA 58.872 50.000 0.00 0.00 0.00 5.36
5639 7545 0.393077 ACTGTGTGTGTCTAGGGCAC 59.607 55.000 10.20 10.20 37.37 5.01
5640 7546 0.392706 CTGTGTGTGTCTAGGGCACA 59.607 55.000 14.22 14.22 43.60 4.57
5641 7547 1.002430 CTGTGTGTGTCTAGGGCACAT 59.998 52.381 18.92 0.00 46.66 3.21
5642 7548 1.001974 TGTGTGTGTCTAGGGCACATC 59.998 52.381 18.92 15.81 46.66 3.06
5643 7549 1.276421 GTGTGTGTCTAGGGCACATCT 59.724 52.381 18.92 0.00 46.66 2.90
5644 7550 2.496070 GTGTGTGTCTAGGGCACATCTA 59.504 50.000 18.92 9.83 46.66 1.98
5645 7551 2.760650 TGTGTGTCTAGGGCACATCTAG 59.239 50.000 18.92 0.00 46.66 2.43
5646 7552 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
5647 7553 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
5648 7554 4.827835 GTGTGTCTAGGGCACATCTAGATA 59.172 45.833 18.92 0.00 46.66 1.98
5649 7555 5.478679 GTGTGTCTAGGGCACATCTAGATAT 59.521 44.000 18.92 0.00 46.66 1.63
5650 7556 5.478332 TGTGTCTAGGGCACATCTAGATATG 59.522 44.000 6.64 6.64 43.25 1.78
5651 7557 4.464244 TGTCTAGGGCACATCTAGATATGC 59.536 45.833 24.83 24.83 43.25 3.14
5652 7558 4.709397 GTCTAGGGCACATCTAGATATGCT 59.291 45.833 29.70 17.06 43.25 3.79
5653 7559 4.952957 TCTAGGGCACATCTAGATATGCTC 59.047 45.833 29.70 27.72 41.84 4.26
5654 7560 3.788933 AGGGCACATCTAGATATGCTCT 58.211 45.455 28.95 28.95 46.41 4.09
5674 7580 8.593492 TGCTCTAGTTATTGCACATATAAGTG 57.407 34.615 3.71 3.71 42.37 3.16
5675 7581 7.657354 TGCTCTAGTTATTGCACATATAAGTGG 59.343 37.037 9.94 4.93 39.87 4.00
5676 7582 7.118390 GCTCTAGTTATTGCACATATAAGTGGG 59.882 40.741 9.94 0.00 39.87 4.61
5677 7583 8.029782 TCTAGTTATTGCACATATAAGTGGGT 57.970 34.615 9.94 0.00 39.87 4.51
5678 7584 6.942532 AGTTATTGCACATATAAGTGGGTG 57.057 37.500 9.94 0.00 39.87 4.61
5679 7585 6.658849 AGTTATTGCACATATAAGTGGGTGA 58.341 36.000 9.94 0.00 39.87 4.02
5680 7586 7.116075 AGTTATTGCACATATAAGTGGGTGAA 58.884 34.615 9.94 0.00 39.87 3.18
5681 7587 7.779798 AGTTATTGCACATATAAGTGGGTGAAT 59.220 33.333 9.94 0.00 39.87 2.57
5682 7588 6.639632 ATTGCACATATAAGTGGGTGAATC 57.360 37.500 9.94 0.00 39.87 2.52
5683 7589 5.109500 TGCACATATAAGTGGGTGAATCA 57.891 39.130 9.94 0.00 39.87 2.57
5684 7590 5.504853 TGCACATATAAGTGGGTGAATCAA 58.495 37.500 9.94 0.00 39.87 2.57
5685 7591 5.589855 TGCACATATAAGTGGGTGAATCAAG 59.410 40.000 9.94 0.00 39.87 3.02
5686 7592 5.506317 GCACATATAAGTGGGTGAATCAAGC 60.506 44.000 9.94 0.00 39.87 4.01
5687 7593 5.589855 CACATATAAGTGGGTGAATCAAGCA 59.410 40.000 0.00 0.00 35.88 3.91
5688 7594 6.263842 CACATATAAGTGGGTGAATCAAGCAT 59.736 38.462 0.00 0.00 35.88 3.79
5689 7595 7.445096 CACATATAAGTGGGTGAATCAAGCATA 59.555 37.037 0.00 0.00 35.88 3.14
5690 7596 7.998383 ACATATAAGTGGGTGAATCAAGCATAA 59.002 33.333 0.00 0.00 0.00 1.90
5691 7597 8.849168 CATATAAGTGGGTGAATCAAGCATAAA 58.151 33.333 0.00 0.00 0.00 1.40
5692 7598 5.649782 AAGTGGGTGAATCAAGCATAAAG 57.350 39.130 0.00 0.00 0.00 1.85
5693 7599 4.922206 AGTGGGTGAATCAAGCATAAAGA 58.078 39.130 0.00 0.00 0.00 2.52
5694 7600 5.324409 AGTGGGTGAATCAAGCATAAAGAA 58.676 37.500 0.00 0.00 0.00 2.52
5695 7601 5.774690 AGTGGGTGAATCAAGCATAAAGAAA 59.225 36.000 0.00 0.00 0.00 2.52
5696 7602 6.267471 AGTGGGTGAATCAAGCATAAAGAAAA 59.733 34.615 0.00 0.00 0.00 2.29
5697 7603 6.928492 GTGGGTGAATCAAGCATAAAGAAAAA 59.072 34.615 0.00 0.00 0.00 1.94
5722 7628 7.921786 AAAGAAAATATCCACACGAATCTCA 57.078 32.000 0.00 0.00 0.00 3.27
5723 7629 7.921786 AAGAAAATATCCACACGAATCTCAA 57.078 32.000 0.00 0.00 0.00 3.02
5724 7630 7.308782 AGAAAATATCCACACGAATCTCAAC 57.691 36.000 0.00 0.00 0.00 3.18
5725 7631 5.718649 AAATATCCACACGAATCTCAACG 57.281 39.130 0.00 0.00 0.00 4.10
5726 7632 2.743636 ATCCACACGAATCTCAACGT 57.256 45.000 0.00 0.00 43.50 3.99
5727 7633 3.861276 ATCCACACGAATCTCAACGTA 57.139 42.857 0.00 0.00 40.76 3.57
5728 7634 3.646611 TCCACACGAATCTCAACGTAA 57.353 42.857 0.00 0.00 40.76 3.18
5729 7635 3.571571 TCCACACGAATCTCAACGTAAG 58.428 45.455 0.00 0.00 40.76 2.34
5730 7636 3.253921 TCCACACGAATCTCAACGTAAGA 59.746 43.478 3.32 3.32 40.76 2.10
5731 7637 4.082408 TCCACACGAATCTCAACGTAAGAT 60.082 41.667 7.39 7.39 40.76 2.40
5732 7638 4.265556 CCACACGAATCTCAACGTAAGATC 59.734 45.833 12.34 6.90 40.76 2.75
5733 7639 4.857037 CACACGAATCTCAACGTAAGATCA 59.143 41.667 12.34 0.00 40.76 2.92
5734 7640 5.344933 CACACGAATCTCAACGTAAGATCAA 59.655 40.000 12.34 0.00 40.76 2.57
5735 7641 6.035005 CACACGAATCTCAACGTAAGATCAAT 59.965 38.462 12.34 0.02 40.76 2.57
5736 7642 6.035005 ACACGAATCTCAACGTAAGATCAATG 59.965 38.462 12.34 12.21 40.76 2.82
5737 7643 6.253512 CACGAATCTCAACGTAAGATCAATGA 59.746 38.462 12.34 0.00 40.76 2.57
5738 7644 6.253727 ACGAATCTCAACGTAAGATCAATGAC 59.746 38.462 12.34 2.89 40.92 3.06
5739 7645 6.253512 CGAATCTCAACGTAAGATCAATGACA 59.746 38.462 12.34 0.00 43.62 3.58
5740 7646 7.043125 CGAATCTCAACGTAAGATCAATGACAT 60.043 37.037 12.34 0.00 43.62 3.06
5741 7647 9.249457 GAATCTCAACGTAAGATCAATGACATA 57.751 33.333 12.34 0.00 43.62 2.29
5742 7648 8.809159 ATCTCAACGTAAGATCAATGACATAG 57.191 34.615 7.39 0.00 43.62 2.23
5743 7649 7.203218 TCTCAACGTAAGATCAATGACATAGG 58.797 38.462 0.00 0.00 43.62 2.57
5744 7650 7.068226 TCTCAACGTAAGATCAATGACATAGGA 59.932 37.037 0.00 0.00 43.62 2.94
5745 7651 6.978659 TCAACGTAAGATCAATGACATAGGAC 59.021 38.462 0.00 0.00 43.62 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.168128 CCAAAAAGCGCCGTCTAAGG 59.832 55.000 2.29 0.00 0.00 2.69
4 5 1.577421 GCCAAAAAGCGCCGTCTAA 59.423 52.632 2.29 0.00 0.00 2.10
5 6 3.259930 GCCAAAAAGCGCCGTCTA 58.740 55.556 2.29 0.00 0.00 2.59
13 14 1.581447 CCTCAGGACGCCAAAAAGC 59.419 57.895 0.00 0.00 0.00 3.51
14 15 1.866853 GCCCTCAGGACGCCAAAAAG 61.867 60.000 0.00 0.00 33.47 2.27
15 16 1.901464 GCCCTCAGGACGCCAAAAA 60.901 57.895 0.00 0.00 33.47 1.94
16 17 2.282180 GCCCTCAGGACGCCAAAA 60.282 61.111 0.00 0.00 33.47 2.44
17 18 4.344865 GGCCCTCAGGACGCCAAA 62.345 66.667 6.11 0.00 42.52 3.28
23 24 3.834799 CCGTACGGCCCTCAGGAC 61.835 72.222 23.44 0.00 38.13 3.85
34 35 3.825833 GAGCATCTCCCGCCGTACG 62.826 68.421 8.69 8.69 43.15 3.67
35 36 2.027751 GAGCATCTCCCGCCGTAC 59.972 66.667 0.00 0.00 0.00 3.67
46 47 3.301274 ACTACCCCAGAGTAAGAGCATC 58.699 50.000 0.00 0.00 0.00 3.91
47 48 3.406512 ACTACCCCAGAGTAAGAGCAT 57.593 47.619 0.00 0.00 0.00 3.79
48 49 2.921834 ACTACCCCAGAGTAAGAGCA 57.078 50.000 0.00 0.00 0.00 4.26
49 50 2.624364 GCTACTACCCCAGAGTAAGAGC 59.376 54.545 0.00 0.00 0.00 4.09
50 51 3.899726 TGCTACTACCCCAGAGTAAGAG 58.100 50.000 0.00 0.00 0.00 2.85
51 52 4.215908 CATGCTACTACCCCAGAGTAAGA 58.784 47.826 0.00 0.00 0.00 2.10
52 53 3.322254 CCATGCTACTACCCCAGAGTAAG 59.678 52.174 0.00 0.00 0.00 2.34
53 54 3.052414 TCCATGCTACTACCCCAGAGTAA 60.052 47.826 0.00 0.00 0.00 2.24
54 55 2.516702 TCCATGCTACTACCCCAGAGTA 59.483 50.000 0.00 0.00 0.00 2.59
55 56 1.291033 TCCATGCTACTACCCCAGAGT 59.709 52.381 0.00 0.00 0.00 3.24
56 57 2.088104 TCCATGCTACTACCCCAGAG 57.912 55.000 0.00 0.00 0.00 3.35
57 58 2.561209 TTCCATGCTACTACCCCAGA 57.439 50.000 0.00 0.00 0.00 3.86
58 59 3.864789 ATTTCCATGCTACTACCCCAG 57.135 47.619 0.00 0.00 0.00 4.45
59 60 4.601406 AAATTTCCATGCTACTACCCCA 57.399 40.909 0.00 0.00 0.00 4.96
60 61 5.449999 CGAAAAATTTCCATGCTACTACCCC 60.450 44.000 0.00 0.00 33.68 4.95
61 62 5.578776 CGAAAAATTTCCATGCTACTACCC 58.421 41.667 0.00 0.00 33.68 3.69
62 63 5.034797 GCGAAAAATTTCCATGCTACTACC 58.965 41.667 0.00 0.00 33.68 3.18
63 64 5.034797 GGCGAAAAATTTCCATGCTACTAC 58.965 41.667 0.00 0.00 33.68 2.73
64 65 4.947388 AGGCGAAAAATTTCCATGCTACTA 59.053 37.500 0.00 0.00 33.68 1.82
65 66 3.763897 AGGCGAAAAATTTCCATGCTACT 59.236 39.130 0.00 0.00 33.68 2.57
82 83 2.739932 GCTTAAGATGCAAGAGAGGCGA 60.740 50.000 6.67 0.00 0.00 5.54
83 84 1.596727 GCTTAAGATGCAAGAGAGGCG 59.403 52.381 6.67 0.00 0.00 5.52
84 85 2.636830 TGCTTAAGATGCAAGAGAGGC 58.363 47.619 6.67 0.00 37.51 4.70
89 93 3.266510 ACCGATGCTTAAGATGCAAGA 57.733 42.857 6.67 0.00 44.01 3.02
122 126 7.095017 GCTATAATAAGCAACTTTGGCCTCTAG 60.095 40.741 3.32 0.53 42.30 2.43
210 221 0.839946 ACCACCACCATCCTATGCTC 59.160 55.000 0.00 0.00 0.00 4.26
211 222 0.548031 CACCACCACCATCCTATGCT 59.452 55.000 0.00 0.00 0.00 3.79
212 223 1.103398 GCACCACCACCATCCTATGC 61.103 60.000 0.00 0.00 0.00 3.14
213 224 0.548031 AGCACCACCACCATCCTATG 59.452 55.000 0.00 0.00 0.00 2.23
221 238 4.947388 TCTTGATTAATTAGCACCACCACC 59.053 41.667 0.00 0.00 0.00 4.61
230 247 8.994170 GGACTGGTCTAATCTTGATTAATTAGC 58.006 37.037 4.85 4.36 36.06 3.09
279 296 0.251341 TTGCTTGCTCCCTTCCTTCC 60.251 55.000 0.00 0.00 0.00 3.46
289 306 4.376717 GCTAATGCTTTTGTTTGCTTGCTC 60.377 41.667 0.00 0.00 36.03 4.26
312 329 2.422832 GGAGAAGCTTTCCATTGCTGAG 59.577 50.000 17.61 0.00 39.71 3.35
361 378 1.806542 AGCGTTGTGATGGATGTGTTC 59.193 47.619 0.00 0.00 0.00 3.18
422 446 0.392729 CCTGGCTCTTTCTGCAGAGG 60.393 60.000 17.43 13.76 40.79 3.69
452 476 1.550374 AGGAGGGGAGGAGGGAGAA 60.550 63.158 0.00 0.00 0.00 2.87
453 477 2.015726 GAGGAGGGGAGGAGGGAGA 61.016 68.421 0.00 0.00 0.00 3.71
454 478 2.612251 GAGGAGGGGAGGAGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
458 482 3.368501 TGGGGAGGAGGGGAGGAG 61.369 72.222 0.00 0.00 0.00 3.69
459 483 3.695825 GTGGGGAGGAGGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
467 498 1.778383 AGGGCTTTTGTGGGGAGGA 60.778 57.895 0.00 0.00 0.00 3.71
469 500 0.322906 GAGAGGGCTTTTGTGGGGAG 60.323 60.000 0.00 0.00 0.00 4.30
470 501 0.772124 AGAGAGGGCTTTTGTGGGGA 60.772 55.000 0.00 0.00 0.00 4.81
506 537 3.502875 GGGATTGGGGAGGGGAGC 61.503 72.222 0.00 0.00 0.00 4.70
534 571 1.329913 TAGAGCGGATGAGCCAAGCA 61.330 55.000 0.00 0.00 38.01 3.91
574 611 1.177401 GCTAGAGCAAACAAAGGGGG 58.823 55.000 0.00 0.00 41.59 5.40
638 683 3.505790 ATGAACCGGCCAAGGCACA 62.506 57.895 13.87 1.13 44.11 4.57
640 685 2.676121 CATGAACCGGCCAAGGCA 60.676 61.111 13.87 0.00 44.11 4.75
751 796 0.462759 GCCGAATCTTGGAGAGGTGG 60.463 60.000 0.00 0.00 0.00 4.61
841 886 6.705863 ATAAATGCAGAAATCCCTCAAGAC 57.294 37.500 0.00 0.00 0.00 3.01
842 887 7.722949 AAATAAATGCAGAAATCCCTCAAGA 57.277 32.000 0.00 0.00 0.00 3.02
843 888 8.036575 TCAAAATAAATGCAGAAATCCCTCAAG 58.963 33.333 0.00 0.00 0.00 3.02
844 889 7.905265 TCAAAATAAATGCAGAAATCCCTCAA 58.095 30.769 0.00 0.00 0.00 3.02
887 934 3.628942 TCCTGAATCTTGAATGAATGCCG 59.371 43.478 0.00 0.00 0.00 5.69
951 998 3.089284 ACAGGAATTCAAACCCGATTCC 58.911 45.455 7.93 6.29 40.66 3.01
968 1015 1.671901 GCGAGGAGGAAGGAGACAGG 61.672 65.000 0.00 0.00 0.00 4.00
1129 1182 0.744281 GAGGAGGAGAAGAGCTTCCG 59.256 60.000 6.61 0.00 40.33 4.30
1199 1252 0.034767 TAGCAAATGCAGCTGCTCCT 60.035 50.000 36.61 25.03 45.79 3.69
1233 1293 1.666888 GGAACAGCACCGATTTTGCAG 60.667 52.381 0.00 0.00 42.83 4.41
1262 1322 4.111916 CTGAAACGGCAAAGACACAAAAT 58.888 39.130 0.00 0.00 0.00 1.82
1265 1325 2.088423 ACTGAAACGGCAAAGACACAA 58.912 42.857 0.00 0.00 0.00 3.33
1275 1335 4.430423 CTCGCGCACTGAAACGGC 62.430 66.667 8.75 0.00 0.00 5.68
1385 1445 7.981102 AGTAAAAGGTGAAGGAAAGATGTAC 57.019 36.000 0.00 0.00 0.00 2.90
1445 1508 9.065798 CAATTTTTGTTGGGGAAAAATCACTAT 57.934 29.630 0.00 0.00 40.48 2.12
1446 1509 7.012799 GCAATTTTTGTTGGGGAAAAATCACTA 59.987 33.333 0.00 0.00 40.48 2.74
1447 1510 6.183360 GCAATTTTTGTTGGGGAAAAATCACT 60.183 34.615 0.00 0.00 40.48 3.41
1448 1511 5.976534 GCAATTTTTGTTGGGGAAAAATCAC 59.023 36.000 0.00 0.00 40.48 3.06
1468 1871 9.841295 AAAGCAAAATGATATTTATGAGGCAAT 57.159 25.926 0.00 0.00 0.00 3.56
1513 1916 3.711190 AGAAAATGCAAAACCAAGGGAGT 59.289 39.130 0.00 0.00 0.00 3.85
1514 1917 4.341366 AGAAAATGCAAAACCAAGGGAG 57.659 40.909 0.00 0.00 0.00 4.30
1603 2097 7.776500 TCTCTCAAGAAATAAATCATGGATGCA 59.224 33.333 0.00 0.00 0.00 3.96
1604 2098 8.162878 TCTCTCAAGAAATAAATCATGGATGC 57.837 34.615 0.00 0.00 0.00 3.91
1617 2111 7.601705 TTGTTTTGGGAATCTCTCAAGAAAT 57.398 32.000 0.00 0.00 38.23 2.17
1702 2197 2.915349 CTAGATGCTGAACCTGCACAT 58.085 47.619 0.75 0.00 40.77 3.21
1739 2234 2.876581 AGTTGTAAAGGAGGCAAAGGG 58.123 47.619 0.00 0.00 0.00 3.95
1742 2237 5.923733 TGAAAAGTTGTAAAGGAGGCAAA 57.076 34.783 0.00 0.00 0.00 3.68
1790 2285 5.471456 GGTGAGCTAGCAATTTAGCATACAT 59.529 40.000 18.83 0.00 46.69 2.29
1803 2298 2.997315 AGCACGGGTGAGCTAGCA 60.997 61.111 18.83 0.00 40.44 3.49
1813 2308 4.154347 GGAGGAGAGCAGCACGGG 62.154 72.222 0.00 0.00 0.00 5.28
1816 2311 2.125188 GCTGGAGGAGAGCAGCAC 60.125 66.667 0.00 0.00 40.14 4.40
1824 2319 0.813210 GCCGAATCAAGCTGGAGGAG 60.813 60.000 0.00 0.00 0.00 3.69
1865 2360 2.879907 CTGGTGCCATGGCTTTCG 59.120 61.111 35.53 18.41 42.51 3.46
1900 2395 1.542915 CACTGGAATTGCTGTCTTGGG 59.457 52.381 6.51 0.00 0.00 4.12
2006 2501 1.649815 CTCGGATTCGGAGGAGTCG 59.350 63.158 12.21 0.00 36.95 4.18
2119 2623 0.031178 GCCGGCATTGTCATTCCATC 59.969 55.000 24.80 0.00 0.00 3.51
2124 2628 0.968405 AACTTGCCGGCATTGTCATT 59.032 45.000 33.25 15.11 0.00 2.57
2174 2678 1.331214 CCTTGTGATTGTGGTGCCTT 58.669 50.000 0.00 0.00 0.00 4.35
2207 2711 3.157087 TGAAATTGACCTTGGGCTCTTC 58.843 45.455 0.00 0.00 0.00 2.87
2243 2747 1.699656 CTGCTGCTTCGATCAACCGG 61.700 60.000 0.00 0.00 0.00 5.28
2247 2751 1.673923 CCTGACTGCTGCTTCGATCAA 60.674 52.381 0.00 0.00 0.00 2.57
2361 2868 4.405671 GGCAGCAGCAGGAGCAGA 62.406 66.667 2.65 0.00 45.49 4.26
2408 2915 1.066215 GCACCAACATTCCCCATTTCC 60.066 52.381 0.00 0.00 0.00 3.13
2417 2924 4.171005 CAGACATTGATGCACCAACATTC 58.829 43.478 0.00 0.00 0.00 2.67
2418 2925 3.056393 CCAGACATTGATGCACCAACATT 60.056 43.478 0.00 0.00 0.00 2.71
2425 2932 1.135489 CAGCACCAGACATTGATGCAC 60.135 52.381 0.00 0.00 38.79 4.57
2475 2982 2.177594 GACCACTGTCTGGGAGCAGG 62.178 65.000 0.00 0.00 45.78 4.85
2514 3021 1.020437 GGCTTCCTATCAGCAGCAAC 58.980 55.000 0.00 0.00 39.21 4.17
2603 3110 5.309806 ACTTTCCTTAAACCTAGCCTTCTCA 59.690 40.000 0.00 0.00 0.00 3.27
2649 3156 4.248859 ACATCTTGATATGTATCAGCGGC 58.751 43.478 3.23 0.00 42.99 6.53
2692 3199 3.585990 CATTCCCACGGGATGCGC 61.586 66.667 5.43 0.00 44.74 6.09
2695 3202 0.680921 AGCAACATTCCCACGGGATG 60.681 55.000 5.43 9.00 44.74 3.51
2786 3293 4.102054 TGCTTCTGCCTCTGAATCATATGA 59.898 41.667 8.10 8.10 38.71 2.15
2807 3314 4.768968 ACATATTGCTCCCCATTTCTATGC 59.231 41.667 0.00 0.00 0.00 3.14
2858 3365 4.876125 TGCTGTTCACACTTTTGTTCAAA 58.124 34.783 0.00 0.00 31.66 2.69
2861 3368 4.096732 ACTGCTGTTCACACTTTTGTTC 57.903 40.909 0.00 0.00 31.66 3.18
2871 3378 4.153117 CCTCAAAGATGTACTGCTGTTCAC 59.847 45.833 0.09 0.00 0.00 3.18
2942 3449 1.265365 GTGCTCAGGTTCTTGTTCTGC 59.735 52.381 0.00 0.00 0.00 4.26
2959 3466 0.388520 GGTTCGATGGCCTTTTGTGC 60.389 55.000 3.32 0.00 0.00 4.57
3149 3656 2.415512 GTCGTTACACCTGGAAGCATTC 59.584 50.000 0.00 0.00 46.67 2.67
3219 3726 2.095263 TGTTTTTGCCGAGCATAGAAGC 60.095 45.455 0.00 0.00 38.76 3.86
3225 3732 2.226437 CACTAGTGTTTTTGCCGAGCAT 59.774 45.455 15.06 0.00 38.76 3.79
3231 3738 3.066760 AGAACAGCACTAGTGTTTTTGCC 59.933 43.478 23.44 6.92 38.26 4.52
3392 3899 7.326454 CAGGAATATCTCTGTTCTTCAACTCA 58.674 38.462 0.00 0.00 33.17 3.41
3438 3945 1.198713 GCCTCCTCAGACCATGAAGA 58.801 55.000 0.00 0.00 37.52 2.87
3458 3965 1.108776 GTAGGACGGGCACATCACTA 58.891 55.000 0.00 0.00 0.00 2.74
3467 3974 1.008767 CGATCTTCGTAGGACGGGC 60.009 63.158 0.00 0.00 42.81 6.13
3510 4017 4.652421 AGACATGCATCAGACTGTCTAG 57.348 45.455 15.04 5.54 44.80 2.43
3536 4043 1.407979 TCGACGGAATTAGGAAGCTCC 59.592 52.381 0.00 0.00 36.58 4.70
3561 4068 6.321181 ACCTCAAGCTTTTTATGAGTTTCACA 59.679 34.615 10.65 0.00 39.10 3.58
3581 4088 5.010617 GGAAGAGCAAAATTTACCAACCTCA 59.989 40.000 0.00 0.00 0.00 3.86
3596 4103 0.473694 TGGAGGACAGGGAAGAGCAA 60.474 55.000 0.00 0.00 0.00 3.91
3614 4121 8.382030 TCTCAGCAATATTAACATACATGGTG 57.618 34.615 0.00 0.00 36.14 4.17
3676 4183 5.049167 GGAGCTGTCATCAGATAAACAGAG 58.951 45.833 21.47 5.24 40.59 3.35
3781 4288 0.679505 TGCATATGTAGGCCGGAGTC 59.320 55.000 5.05 0.00 30.87 3.36
3788 4295 4.689812 CAGTTCTCATCTGCATATGTAGGC 59.310 45.833 19.19 0.00 0.00 3.93
3887 4394 3.375922 CCCAAACTGTACAAACGAAGTGT 59.624 43.478 0.00 0.00 45.00 3.55
3894 4401 2.429250 AGTTGGCCCAAACTGTACAAAC 59.571 45.455 7.64 0.00 38.95 2.93
3895 4402 2.741145 AGTTGGCCCAAACTGTACAAA 58.259 42.857 7.64 0.00 38.95 2.83
3896 4403 2.445682 AGTTGGCCCAAACTGTACAA 57.554 45.000 7.64 0.00 38.95 2.41
3902 4409 1.859302 TTTGTCAGTTGGCCCAAACT 58.141 45.000 0.00 0.32 41.08 2.66
3957 4465 3.806521 CGAAAATATGCTGACAGAGGGAG 59.193 47.826 6.65 0.00 0.00 4.30
3958 4466 3.432186 CCGAAAATATGCTGACAGAGGGA 60.432 47.826 6.65 0.00 0.00 4.20
4001 4509 4.580995 GCCAAGATAGTGCTACTCAGTCTA 59.419 45.833 0.00 0.00 0.00 2.59
4002 4510 3.383185 GCCAAGATAGTGCTACTCAGTCT 59.617 47.826 0.00 0.00 0.00 3.24
4006 4514 3.679917 GCAAGCCAAGATAGTGCTACTCA 60.680 47.826 0.00 0.00 34.29 3.41
4016 4524 2.019249 GTCAGCATGCAAGCCAAGATA 58.981 47.619 21.98 0.00 34.76 1.98
4230 4739 3.134127 GACCTCGGCATGCCCAAC 61.134 66.667 30.79 13.81 0.00 3.77
4272 4781 2.383527 CGGAGGAGCAGACGTTTGC 61.384 63.158 22.50 22.50 44.41 3.68
4309 4818 1.645710 TGTTCTCAGGAGGAAGGTCC 58.354 55.000 0.00 0.00 36.58 4.46
4311 4820 2.192263 GGATGTTCTCAGGAGGAAGGT 58.808 52.381 0.00 0.00 0.00 3.50
4313 4822 2.100584 CTCGGATGTTCTCAGGAGGAAG 59.899 54.545 0.00 0.00 0.00 3.46
4362 4871 2.597510 GTTGGTGGTGGTGGAGCC 60.598 66.667 0.00 0.00 37.90 4.70
4368 4877 1.152963 GTCTGCTGTTGGTGGTGGT 60.153 57.895 0.00 0.00 0.00 4.16
4369 4878 1.898574 GGTCTGCTGTTGGTGGTGG 60.899 63.158 0.00 0.00 0.00 4.61
4372 4881 1.152777 TTGGGTCTGCTGTTGGTGG 60.153 57.895 0.00 0.00 0.00 4.61
4373 4882 1.174712 CCTTGGGTCTGCTGTTGGTG 61.175 60.000 0.00 0.00 0.00 4.17
4374 4883 1.151450 CCTTGGGTCTGCTGTTGGT 59.849 57.895 0.00 0.00 0.00 3.67
4375 4884 2.270986 GCCTTGGGTCTGCTGTTGG 61.271 63.158 0.00 0.00 0.00 3.77
4730 5242 3.656559 TCTCTGTTACAAGTTTACGGCC 58.343 45.455 0.00 0.00 0.00 6.13
4749 5261 4.086706 ACCACGAAAGAACATTCCTTCT 57.913 40.909 0.00 0.00 31.41 2.85
4750 5262 4.995487 ACTACCACGAAAGAACATTCCTTC 59.005 41.667 0.00 0.00 0.00 3.46
4753 5268 3.435671 CCACTACCACGAAAGAACATTCC 59.564 47.826 0.00 0.00 0.00 3.01
4784 5299 2.662866 TCACAACTCCTCCTATACCCG 58.337 52.381 0.00 0.00 0.00 5.28
4789 5304 4.653341 CCTCTTCATCACAACTCCTCCTAT 59.347 45.833 0.00 0.00 0.00 2.57
4790 5305 4.026744 CCTCTTCATCACAACTCCTCCTA 58.973 47.826 0.00 0.00 0.00 2.94
4791 5306 2.836981 CCTCTTCATCACAACTCCTCCT 59.163 50.000 0.00 0.00 0.00 3.69
4792 5307 2.569404 ACCTCTTCATCACAACTCCTCC 59.431 50.000 0.00 0.00 0.00 4.30
4793 5308 3.971245 ACCTCTTCATCACAACTCCTC 57.029 47.619 0.00 0.00 0.00 3.71
4794 5309 4.646572 GAAACCTCTTCATCACAACTCCT 58.353 43.478 0.00 0.00 0.00 3.69
4795 5310 3.433615 CGAAACCTCTTCATCACAACTCC 59.566 47.826 0.00 0.00 0.00 3.85
4796 5311 4.058817 ACGAAACCTCTTCATCACAACTC 58.941 43.478 0.00 0.00 0.00 3.01
4797 5312 4.073293 ACGAAACCTCTTCATCACAACT 57.927 40.909 0.00 0.00 0.00 3.16
4798 5313 4.813296 AACGAAACCTCTTCATCACAAC 57.187 40.909 0.00 0.00 0.00 3.32
4799 5314 4.025229 CGAAACGAAACCTCTTCATCACAA 60.025 41.667 0.00 0.00 0.00 3.33
4800 5315 3.493129 CGAAACGAAACCTCTTCATCACA 59.507 43.478 0.00 0.00 0.00 3.58
4801 5316 3.739300 TCGAAACGAAACCTCTTCATCAC 59.261 43.478 0.00 0.00 31.06 3.06
4802 5317 3.985008 TCGAAACGAAACCTCTTCATCA 58.015 40.909 0.00 0.00 31.06 3.07
4803 5318 4.389077 ACATCGAAACGAAACCTCTTCATC 59.611 41.667 0.00 0.00 39.99 2.92
4813 5344 1.331138 ACCGCAAACATCGAAACGAAA 59.669 42.857 0.00 0.00 39.99 3.46
4927 5480 3.427573 ACGGGTTCCTTTCCTTTAATGG 58.572 45.455 0.83 0.83 34.40 3.16
4930 5483 4.442401 AAGACGGGTTCCTTTCCTTTAA 57.558 40.909 0.00 0.00 0.00 1.52
4931 5484 5.565455 TTAAGACGGGTTCCTTTCCTTTA 57.435 39.130 0.00 0.00 0.00 1.85
4979 5540 4.866486 GCTGGGTTCAATTTATTTCAGCAG 59.134 41.667 12.27 0.00 43.82 4.24
4980 5541 4.322650 GGCTGGGTTCAATTTATTTCAGCA 60.323 41.667 16.52 0.00 45.49 4.41
4981 5542 4.183865 GGCTGGGTTCAATTTATTTCAGC 58.816 43.478 0.00 0.00 43.70 4.26
5010 5571 1.728971 GATCTATGCTATGCACGCACC 59.271 52.381 14.00 0.11 43.04 5.01
5022 5583 1.080434 GAGGCGGACGGATCTATGC 60.080 63.158 0.00 0.00 0.00 3.14
5023 5584 0.523966 GAGAGGCGGACGGATCTATG 59.476 60.000 0.00 0.00 0.00 2.23
5024 5585 0.609681 GGAGAGGCGGACGGATCTAT 60.610 60.000 0.00 0.00 0.00 1.98
5025 5586 1.228184 GGAGAGGCGGACGGATCTA 60.228 63.158 0.00 0.00 0.00 1.98
5026 5587 2.519780 GGAGAGGCGGACGGATCT 60.520 66.667 0.00 0.00 0.00 2.75
5062 5628 1.267732 GCATCGCAAAAGACGGAGATG 60.268 52.381 0.00 0.00 42.09 2.90
5068 5634 1.059369 CTCGGCATCGCAAAAGACG 59.941 57.895 0.00 0.00 36.13 4.18
5070 5636 2.398554 GCCTCGGCATCGCAAAAGA 61.399 57.895 2.41 0.00 41.49 2.52
5314 7219 7.548196 AGAATACACGTTTGAGAAAGAACAA 57.452 32.000 0.00 0.00 0.00 2.83
5316 7221 8.762426 ACTAAGAATACACGTTTGAGAAAGAAC 58.238 33.333 0.00 0.00 0.00 3.01
5317 7222 8.882415 ACTAAGAATACACGTTTGAGAAAGAA 57.118 30.769 0.00 0.00 0.00 2.52
5318 7223 8.882415 AACTAAGAATACACGTTTGAGAAAGA 57.118 30.769 0.00 0.00 0.00 2.52
5320 7225 9.925268 GAAAACTAAGAATACACGTTTGAGAAA 57.075 29.630 0.00 0.00 0.00 2.52
5321 7226 9.321562 AGAAAACTAAGAATACACGTTTGAGAA 57.678 29.630 0.00 0.00 0.00 2.87
5337 7243 7.043059 GCTGATCGGACAATCTAGAAAACTAAG 60.043 40.741 5.48 0.00 0.00 2.18
5341 7247 5.112686 AGCTGATCGGACAATCTAGAAAAC 58.887 41.667 5.48 0.00 0.00 2.43
5353 7259 3.932710 TCACAAAACATAGCTGATCGGAC 59.067 43.478 5.48 0.00 0.00 4.79
5393 7299 6.634805 TGTGAATTAGGCAAACTGAAAACAA 58.365 32.000 0.00 0.00 0.00 2.83
5398 7304 7.394016 TCTAGATGTGAATTAGGCAAACTGAA 58.606 34.615 0.00 0.00 0.00 3.02
5399 7305 6.946340 TCTAGATGTGAATTAGGCAAACTGA 58.054 36.000 0.00 0.00 0.00 3.41
5400 7306 7.637229 CATCTAGATGTGAATTAGGCAAACTG 58.363 38.462 22.42 0.00 34.23 3.16
5401 7307 7.798596 CATCTAGATGTGAATTAGGCAAACT 57.201 36.000 22.42 0.00 34.23 2.66
5431 7337 9.587772 GTGAGAGCTTAGATGTAACATCTTAAA 57.412 33.333 0.00 0.00 0.00 1.52
5432 7338 8.749354 TGTGAGAGCTTAGATGTAACATCTTAA 58.251 33.333 0.00 0.00 0.00 1.85
5433 7339 8.293699 TGTGAGAGCTTAGATGTAACATCTTA 57.706 34.615 0.00 0.00 0.00 2.10
5434 7340 7.175347 TGTGAGAGCTTAGATGTAACATCTT 57.825 36.000 0.00 0.00 0.00 2.40
5435 7341 6.782082 TGTGAGAGCTTAGATGTAACATCT 57.218 37.500 0.00 0.00 0.00 2.90
5436 7342 7.834068 TTTGTGAGAGCTTAGATGTAACATC 57.166 36.000 0.00 0.00 0.00 3.06
5437 7343 9.319143 GTATTTGTGAGAGCTTAGATGTAACAT 57.681 33.333 0.00 0.00 0.00 2.71
5438 7344 8.311109 TGTATTTGTGAGAGCTTAGATGTAACA 58.689 33.333 0.00 0.00 0.00 2.41
5439 7345 8.596380 GTGTATTTGTGAGAGCTTAGATGTAAC 58.404 37.037 0.00 0.00 0.00 2.50
5440 7346 8.311109 TGTGTATTTGTGAGAGCTTAGATGTAA 58.689 33.333 0.00 0.00 0.00 2.41
5441 7347 7.836842 TGTGTATTTGTGAGAGCTTAGATGTA 58.163 34.615 0.00 0.00 0.00 2.29
5442 7348 6.701340 TGTGTATTTGTGAGAGCTTAGATGT 58.299 36.000 0.00 0.00 0.00 3.06
5443 7349 7.118245 TGTTGTGTATTTGTGAGAGCTTAGATG 59.882 37.037 0.00 0.00 0.00 2.90
5444 7350 7.161404 TGTTGTGTATTTGTGAGAGCTTAGAT 58.839 34.615 0.00 0.00 0.00 1.98
5445 7351 6.521162 TGTTGTGTATTTGTGAGAGCTTAGA 58.479 36.000 0.00 0.00 0.00 2.10
5446 7352 6.785488 TGTTGTGTATTTGTGAGAGCTTAG 57.215 37.500 0.00 0.00 0.00 2.18
5447 7353 6.540551 TGTTGTTGTGTATTTGTGAGAGCTTA 59.459 34.615 0.00 0.00 0.00 3.09
5448 7354 5.356751 TGTTGTTGTGTATTTGTGAGAGCTT 59.643 36.000 0.00 0.00 0.00 3.74
5449 7355 4.881273 TGTTGTTGTGTATTTGTGAGAGCT 59.119 37.500 0.00 0.00 0.00 4.09
5450 7356 5.168526 TGTTGTTGTGTATTTGTGAGAGC 57.831 39.130 0.00 0.00 0.00 4.09
5451 7357 7.471721 TCTTTGTTGTTGTGTATTTGTGAGAG 58.528 34.615 0.00 0.00 0.00 3.20
5452 7358 7.384439 TCTTTGTTGTTGTGTATTTGTGAGA 57.616 32.000 0.00 0.00 0.00 3.27
5453 7359 8.633075 ATTCTTTGTTGTTGTGTATTTGTGAG 57.367 30.769 0.00 0.00 0.00 3.51
5454 7360 8.994429 AATTCTTTGTTGTTGTGTATTTGTGA 57.006 26.923 0.00 0.00 0.00 3.58
5502 7408 9.541884 AAGGGACTATGTTTGTGGTATATTTTT 57.458 29.630 0.00 0.00 38.49 1.94
5503 7409 9.541884 AAAGGGACTATGTTTGTGGTATATTTT 57.458 29.630 0.00 0.00 38.49 1.82
5504 7410 9.541884 AAAAGGGACTATGTTTGTGGTATATTT 57.458 29.630 0.00 0.00 38.49 1.40
5505 7411 8.966868 CAAAAGGGACTATGTTTGTGGTATATT 58.033 33.333 0.00 0.00 38.49 1.28
5506 7412 8.113462 ACAAAAGGGACTATGTTTGTGGTATAT 58.887 33.333 0.16 0.00 41.40 0.86
5507 7413 7.463431 ACAAAAGGGACTATGTTTGTGGTATA 58.537 34.615 0.16 0.00 41.40 1.47
5508 7414 6.311735 ACAAAAGGGACTATGTTTGTGGTAT 58.688 36.000 0.16 0.00 41.40 2.73
5509 7415 5.697067 ACAAAAGGGACTATGTTTGTGGTA 58.303 37.500 0.16 0.00 41.40 3.25
5510 7416 4.542697 ACAAAAGGGACTATGTTTGTGGT 58.457 39.130 0.16 0.00 41.40 4.16
5511 7417 5.529581 AACAAAAGGGACTATGTTTGTGG 57.470 39.130 1.73 0.00 43.11 4.17
5541 7447 9.838339 CTCTGTCCAACAAAATATAAGTATCCT 57.162 33.333 0.00 0.00 0.00 3.24
5542 7448 9.832445 TCTCTGTCCAACAAAATATAAGTATCC 57.168 33.333 0.00 0.00 0.00 2.59
5546 7452 9.574516 AGTTTCTCTGTCCAACAAAATATAAGT 57.425 29.630 0.00 0.00 0.00 2.24
5550 7456 8.912988 TGAAAGTTTCTCTGTCCAACAAAATAT 58.087 29.630 16.33 0.00 29.59 1.28
5551 7457 8.188139 GTGAAAGTTTCTCTGTCCAACAAAATA 58.812 33.333 16.33 0.00 29.59 1.40
5552 7458 7.035612 GTGAAAGTTTCTCTGTCCAACAAAAT 58.964 34.615 16.33 0.00 29.59 1.82
5553 7459 6.015856 TGTGAAAGTTTCTCTGTCCAACAAAA 60.016 34.615 16.33 0.00 29.59 2.44
5554 7460 5.475220 TGTGAAAGTTTCTCTGTCCAACAAA 59.525 36.000 16.33 0.00 29.59 2.83
5555 7461 5.007034 TGTGAAAGTTTCTCTGTCCAACAA 58.993 37.500 16.33 0.00 29.59 2.83
5556 7462 4.584874 TGTGAAAGTTTCTCTGTCCAACA 58.415 39.130 16.33 7.04 29.59 3.33
5557 7463 5.106317 TGTTGTGAAAGTTTCTCTGTCCAAC 60.106 40.000 16.33 16.18 39.38 3.77
5558 7464 5.007034 TGTTGTGAAAGTTTCTCTGTCCAA 58.993 37.500 16.33 7.08 29.59 3.53
5559 7465 4.584874 TGTTGTGAAAGTTTCTCTGTCCA 58.415 39.130 16.33 6.23 29.59 4.02
5560 7466 5.560966 TTGTTGTGAAAGTTTCTCTGTCC 57.439 39.130 16.33 4.10 29.59 4.02
5561 7467 9.010366 GTTTATTGTTGTGAAAGTTTCTCTGTC 57.990 33.333 16.33 8.21 0.00 3.51
5562 7468 8.739972 AGTTTATTGTTGTGAAAGTTTCTCTGT 58.260 29.630 16.33 2.81 0.00 3.41
5565 7471 9.170584 GCTAGTTTATTGTTGTGAAAGTTTCTC 57.829 33.333 16.33 13.11 0.00 2.87
5566 7472 7.855904 CGCTAGTTTATTGTTGTGAAAGTTTCT 59.144 33.333 16.33 0.00 0.00 2.52
5567 7473 7.642586 ACGCTAGTTTATTGTTGTGAAAGTTTC 59.357 33.333 8.75 8.75 0.00 2.78
5568 7474 7.431084 CACGCTAGTTTATTGTTGTGAAAGTTT 59.569 33.333 0.00 0.00 0.00 2.66
5569 7475 6.910433 CACGCTAGTTTATTGTTGTGAAAGTT 59.090 34.615 0.00 0.00 0.00 2.66
5570 7476 6.259167 TCACGCTAGTTTATTGTTGTGAAAGT 59.741 34.615 0.00 0.00 32.68 2.66
5571 7477 6.655062 TCACGCTAGTTTATTGTTGTGAAAG 58.345 36.000 0.00 0.00 32.68 2.62
5572 7478 6.606234 TCACGCTAGTTTATTGTTGTGAAA 57.394 33.333 0.00 0.00 32.68 2.69
5573 7479 6.425417 TGATCACGCTAGTTTATTGTTGTGAA 59.575 34.615 0.00 0.00 38.44 3.18
5574 7480 5.929415 TGATCACGCTAGTTTATTGTTGTGA 59.071 36.000 0.00 0.00 39.18 3.58
5575 7481 6.164408 TGATCACGCTAGTTTATTGTTGTG 57.836 37.500 0.00 0.00 0.00 3.33
5576 7482 5.351465 CCTGATCACGCTAGTTTATTGTTGT 59.649 40.000 0.00 0.00 0.00 3.32
5577 7483 5.580691 TCCTGATCACGCTAGTTTATTGTTG 59.419 40.000 0.00 0.00 0.00 3.33
5578 7484 5.730550 TCCTGATCACGCTAGTTTATTGTT 58.269 37.500 0.00 0.00 0.00 2.83
5579 7485 5.127194 TCTCCTGATCACGCTAGTTTATTGT 59.873 40.000 0.00 0.00 0.00 2.71
5580 7486 5.460419 GTCTCCTGATCACGCTAGTTTATTG 59.540 44.000 0.00 0.00 0.00 1.90
5581 7487 5.361285 AGTCTCCTGATCACGCTAGTTTATT 59.639 40.000 0.00 0.00 0.00 1.40
5582 7488 4.890581 AGTCTCCTGATCACGCTAGTTTAT 59.109 41.667 0.00 0.00 0.00 1.40
5583 7489 4.096532 CAGTCTCCTGATCACGCTAGTTTA 59.903 45.833 0.00 0.00 41.50 2.01
5584 7490 3.093057 AGTCTCCTGATCACGCTAGTTT 58.907 45.455 0.00 0.00 0.00 2.66
5585 7491 2.425312 CAGTCTCCTGATCACGCTAGTT 59.575 50.000 0.00 0.00 41.50 2.24
5586 7492 2.020720 CAGTCTCCTGATCACGCTAGT 58.979 52.381 0.00 0.00 41.50 2.57
5587 7493 1.268999 GCAGTCTCCTGATCACGCTAG 60.269 57.143 0.00 0.00 41.50 3.42
5588 7494 0.741326 GCAGTCTCCTGATCACGCTA 59.259 55.000 0.00 0.00 41.50 4.26
5589 7495 1.253593 TGCAGTCTCCTGATCACGCT 61.254 55.000 0.00 0.00 41.50 5.07
5590 7496 0.390340 TTGCAGTCTCCTGATCACGC 60.390 55.000 0.00 0.00 41.50 5.34
5591 7497 2.306341 ATTGCAGTCTCCTGATCACG 57.694 50.000 0.00 0.00 41.50 4.35
5592 7498 5.363101 TGATAATTGCAGTCTCCTGATCAC 58.637 41.667 0.00 0.00 41.50 3.06
5593 7499 5.454329 CCTGATAATTGCAGTCTCCTGATCA 60.454 44.000 0.00 0.00 41.50 2.92
5594 7500 4.996122 CCTGATAATTGCAGTCTCCTGATC 59.004 45.833 8.68 0.00 41.50 2.92
5595 7501 4.657504 TCCTGATAATTGCAGTCTCCTGAT 59.342 41.667 8.68 0.00 41.50 2.90
5596 7502 4.033009 TCCTGATAATTGCAGTCTCCTGA 58.967 43.478 8.68 0.00 41.50 3.86
5597 7503 4.412796 TCCTGATAATTGCAGTCTCCTG 57.587 45.455 8.68 0.00 41.91 3.86
5598 7504 5.045286 AGTTTCCTGATAATTGCAGTCTCCT 60.045 40.000 8.68 0.00 0.00 3.69
5599 7505 5.065731 CAGTTTCCTGATAATTGCAGTCTCC 59.934 44.000 8.68 0.00 41.50 3.71
5600 7506 5.645497 ACAGTTTCCTGATAATTGCAGTCTC 59.355 40.000 8.68 0.00 41.50 3.36
5601 7507 5.413833 CACAGTTTCCTGATAATTGCAGTCT 59.586 40.000 8.68 1.49 41.50 3.24
5602 7508 5.182001 ACACAGTTTCCTGATAATTGCAGTC 59.818 40.000 8.68 0.00 41.50 3.51
5603 7509 5.048504 CACACAGTTTCCTGATAATTGCAGT 60.049 40.000 8.68 0.00 41.50 4.40
5604 7510 5.048504 ACACACAGTTTCCTGATAATTGCAG 60.049 40.000 0.00 3.82 41.50 4.41
5605 7511 4.826733 ACACACAGTTTCCTGATAATTGCA 59.173 37.500 0.00 0.00 41.50 4.08
5606 7512 5.156355 CACACACAGTTTCCTGATAATTGC 58.844 41.667 0.00 0.00 41.50 3.56
5607 7513 6.205464 AGACACACACAGTTTCCTGATAATTG 59.795 38.462 0.00 0.00 41.50 2.32
5608 7514 6.299141 AGACACACACAGTTTCCTGATAATT 58.701 36.000 0.00 0.00 41.50 1.40
5609 7515 5.869579 AGACACACACAGTTTCCTGATAAT 58.130 37.500 0.00 0.00 41.50 1.28
5610 7516 5.290493 AGACACACACAGTTTCCTGATAA 57.710 39.130 0.00 0.00 41.50 1.75
5611 7517 4.955811 AGACACACACAGTTTCCTGATA 57.044 40.909 0.00 0.00 41.50 2.15
5612 7518 3.845781 AGACACACACAGTTTCCTGAT 57.154 42.857 0.00 0.00 41.50 2.90
5613 7519 3.069586 CCTAGACACACACAGTTTCCTGA 59.930 47.826 0.00 0.00 41.50 3.86
5614 7520 3.393800 CCTAGACACACACAGTTTCCTG 58.606 50.000 0.00 0.00 44.68 3.86
5615 7521 2.368875 CCCTAGACACACACAGTTTCCT 59.631 50.000 0.00 0.00 0.00 3.36
5616 7522 2.767505 CCCTAGACACACACAGTTTCC 58.232 52.381 0.00 0.00 0.00 3.13
5617 7523 2.143925 GCCCTAGACACACACAGTTTC 58.856 52.381 0.00 0.00 0.00 2.78
5618 7524 1.488812 TGCCCTAGACACACACAGTTT 59.511 47.619 0.00 0.00 0.00 2.66
5619 7525 1.128200 TGCCCTAGACACACACAGTT 58.872 50.000 0.00 0.00 0.00 3.16
5620 7526 0.393077 GTGCCCTAGACACACACAGT 59.607 55.000 10.07 0.00 37.96 3.55
5621 7527 0.392706 TGTGCCCTAGACACACACAG 59.607 55.000 12.81 0.00 42.88 3.66
5622 7528 2.522271 TGTGCCCTAGACACACACA 58.478 52.632 12.81 6.76 42.88 3.72
5627 7533 5.623368 GCATATCTAGATGTGCCCTAGACAC 60.623 48.000 32.93 11.25 46.14 3.67
5628 7534 4.464244 GCATATCTAGATGTGCCCTAGACA 59.536 45.833 32.93 4.75 46.14 3.41
5629 7535 5.004922 GCATATCTAGATGTGCCCTAGAC 57.995 47.826 32.93 12.44 46.14 2.59
5648 7554 9.212641 CACTTATATGTGCAATAACTAGAGCAT 57.787 33.333 5.88 0.00 39.43 3.79
5649 7555 7.657354 CCACTTATATGTGCAATAACTAGAGCA 59.343 37.037 12.20 0.00 36.68 4.26
5650 7556 7.118390 CCCACTTATATGTGCAATAACTAGAGC 59.882 40.741 12.20 0.00 36.68 4.09
5651 7557 8.150945 ACCCACTTATATGTGCAATAACTAGAG 58.849 37.037 12.20 0.00 36.68 2.43
5652 7558 7.931407 CACCCACTTATATGTGCAATAACTAGA 59.069 37.037 12.20 0.00 36.68 2.43
5653 7559 7.931407 TCACCCACTTATATGTGCAATAACTAG 59.069 37.037 12.20 0.00 36.68 2.57
5654 7560 7.797062 TCACCCACTTATATGTGCAATAACTA 58.203 34.615 12.20 0.00 36.68 2.24
5655 7561 6.658849 TCACCCACTTATATGTGCAATAACT 58.341 36.000 12.20 0.00 36.68 2.24
5656 7562 6.935741 TCACCCACTTATATGTGCAATAAC 57.064 37.500 12.20 0.00 36.68 1.89
5657 7563 7.777440 TGATTCACCCACTTATATGTGCAATAA 59.223 33.333 12.20 5.63 36.68 1.40
5658 7564 7.286313 TGATTCACCCACTTATATGTGCAATA 58.714 34.615 12.20 0.00 36.68 1.90
5659 7565 6.128486 TGATTCACCCACTTATATGTGCAAT 58.872 36.000 12.20 7.74 36.68 3.56
5660 7566 5.504853 TGATTCACCCACTTATATGTGCAA 58.495 37.500 12.20 4.07 36.68 4.08
5661 7567 5.109500 TGATTCACCCACTTATATGTGCA 57.891 39.130 12.20 2.18 36.68 4.57
5662 7568 5.506317 GCTTGATTCACCCACTTATATGTGC 60.506 44.000 12.20 0.00 36.68 4.57
5663 7569 5.589855 TGCTTGATTCACCCACTTATATGTG 59.410 40.000 10.98 10.98 37.66 3.21
5664 7570 5.754782 TGCTTGATTCACCCACTTATATGT 58.245 37.500 0.00 0.00 0.00 2.29
5665 7571 6.889301 ATGCTTGATTCACCCACTTATATG 57.111 37.500 0.00 0.00 0.00 1.78
5666 7572 8.995027 TTTATGCTTGATTCACCCACTTATAT 57.005 30.769 0.00 0.00 0.00 0.86
5667 7573 8.271458 TCTTTATGCTTGATTCACCCACTTATA 58.729 33.333 0.00 0.00 0.00 0.98
5668 7574 7.118723 TCTTTATGCTTGATTCACCCACTTAT 58.881 34.615 0.00 0.00 0.00 1.73
5669 7575 6.480763 TCTTTATGCTTGATTCACCCACTTA 58.519 36.000 0.00 0.00 0.00 2.24
5670 7576 5.324409 TCTTTATGCTTGATTCACCCACTT 58.676 37.500 0.00 0.00 0.00 3.16
5671 7577 4.922206 TCTTTATGCTTGATTCACCCACT 58.078 39.130 0.00 0.00 0.00 4.00
5672 7578 5.643379 TTCTTTATGCTTGATTCACCCAC 57.357 39.130 0.00 0.00 0.00 4.61
5673 7579 6.662865 TTTTCTTTATGCTTGATTCACCCA 57.337 33.333 0.00 0.00 0.00 4.51
5696 7602 8.792633 TGAGATTCGTGTGGATATTTTCTTTTT 58.207 29.630 0.00 0.00 0.00 1.94
5697 7603 8.335532 TGAGATTCGTGTGGATATTTTCTTTT 57.664 30.769 0.00 0.00 0.00 2.27
5698 7604 7.921786 TGAGATTCGTGTGGATATTTTCTTT 57.078 32.000 0.00 0.00 0.00 2.52
5699 7605 7.413000 CGTTGAGATTCGTGTGGATATTTTCTT 60.413 37.037 0.00 0.00 0.00 2.52
5700 7606 6.036083 CGTTGAGATTCGTGTGGATATTTTCT 59.964 38.462 0.00 0.00 0.00 2.52
5701 7607 6.183360 ACGTTGAGATTCGTGTGGATATTTTC 60.183 38.462 0.00 0.00 38.85 2.29
5702 7608 5.642063 ACGTTGAGATTCGTGTGGATATTTT 59.358 36.000 0.00 0.00 38.85 1.82
5703 7609 5.175859 ACGTTGAGATTCGTGTGGATATTT 58.824 37.500 0.00 0.00 38.85 1.40
5704 7610 4.755411 ACGTTGAGATTCGTGTGGATATT 58.245 39.130 0.00 0.00 38.85 1.28
5705 7611 4.386867 ACGTTGAGATTCGTGTGGATAT 57.613 40.909 0.00 0.00 38.85 1.63
5706 7612 3.861276 ACGTTGAGATTCGTGTGGATA 57.139 42.857 0.00 0.00 38.85 2.59
5707 7613 2.743636 ACGTTGAGATTCGTGTGGAT 57.256 45.000 0.00 0.00 38.85 3.41
5708 7614 3.253921 TCTTACGTTGAGATTCGTGTGGA 59.746 43.478 0.00 0.00 40.50 4.02
5709 7615 3.571571 TCTTACGTTGAGATTCGTGTGG 58.428 45.455 0.00 0.00 40.50 4.17
5710 7616 4.857037 TGATCTTACGTTGAGATTCGTGTG 59.143 41.667 13.35 0.00 40.50 3.82
5711 7617 5.055642 TGATCTTACGTTGAGATTCGTGT 57.944 39.130 13.35 0.00 40.50 4.49
5712 7618 6.253512 TCATTGATCTTACGTTGAGATTCGTG 59.746 38.462 13.35 11.92 40.50 4.35
5713 7619 6.253727 GTCATTGATCTTACGTTGAGATTCGT 59.746 38.462 13.35 0.00 42.82 3.85
5714 7620 6.253512 TGTCATTGATCTTACGTTGAGATTCG 59.746 38.462 13.35 5.46 34.13 3.34
5715 7621 7.525688 TGTCATTGATCTTACGTTGAGATTC 57.474 36.000 13.35 8.73 34.13 2.52
5716 7622 9.254133 CTATGTCATTGATCTTACGTTGAGATT 57.746 33.333 13.35 0.00 34.13 2.40
5717 7623 7.869937 CCTATGTCATTGATCTTACGTTGAGAT 59.130 37.037 12.34 12.34 36.60 2.75
5718 7624 7.068226 TCCTATGTCATTGATCTTACGTTGAGA 59.932 37.037 0.00 0.00 0.00 3.27
5719 7625 7.168302 GTCCTATGTCATTGATCTTACGTTGAG 59.832 40.741 0.00 0.00 0.00 3.02
5720 7626 6.978659 GTCCTATGTCATTGATCTTACGTTGA 59.021 38.462 0.00 0.00 0.00 3.18
5721 7627 7.166628 GTCCTATGTCATTGATCTTACGTTG 57.833 40.000 0.00 0.00 0.00 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.