Multiple sequence alignment - TraesCS1A01G374600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G374600 chr1A 100.000 4167 0 0 1 4167 549701523 549705689 0.000000e+00 7696.0
1 TraesCS1A01G374600 chr1D 96.082 3012 85 9 367 3359 457047882 457050879 0.000000e+00 4878.0
2 TraesCS1A01G374600 chr1D 83.784 333 29 10 3591 3915 457063505 457063820 4.070000e-75 292.0
3 TraesCS1A01G374600 chr1D 89.189 222 23 1 8 229 103723610 103723830 4.100000e-70 276.0
4 TraesCS1A01G374600 chr1D 90.099 202 19 1 3967 4167 457066176 457066377 1.150000e-65 261.0
5 TraesCS1A01G374600 chr1D 98.413 63 1 0 3918 3980 457064384 457064446 1.220000e-20 111.0
6 TraesCS1A01G374600 chr1D 88.312 77 6 3 3414 3490 457051001 457051074 5.740000e-14 89.8
7 TraesCS1A01G374600 chr1B 96.317 1575 47 5 932 2497 626656502 626658074 0.000000e+00 2577.0
8 TraesCS1A01G374600 chr1B 94.385 1407 57 12 2481 3872 626666432 626667831 0.000000e+00 2141.0
9 TraesCS1A01G374600 chr1B 88.468 581 13 11 367 928 626651485 626652030 0.000000e+00 652.0
10 TraesCS1A01G374600 chr1B 87.560 209 20 4 21 228 669211029 669211232 1.940000e-58 237.0
11 TraesCS1A01G374600 chr6B 85.421 439 58 4 2723 3161 33712248 33711816 6.350000e-123 451.0
12 TraesCS1A01G374600 chr6B 78.292 562 74 25 2883 3404 35544531 35545084 6.720000e-83 318.0
13 TraesCS1A01G374600 chr6B 78.292 562 74 25 2883 3404 35558295 35558848 6.720000e-83 318.0
14 TraesCS1A01G374600 chr6B 89.730 185 17 2 2488 2670 35544194 35544378 6.960000e-58 235.0
15 TraesCS1A01G374600 chr6B 89.730 185 17 2 2488 2670 35557958 35558142 6.960000e-58 235.0
16 TraesCS1A01G374600 chr3D 93.665 221 13 1 11 231 500107945 500107726 3.110000e-86 329.0
17 TraesCS1A01G374600 chr3D 89.189 222 22 2 8 228 451231910 451231690 4.100000e-70 276.0
18 TraesCS1A01G374600 chr7D 91.743 218 17 1 8 225 200475347 200475131 6.770000e-78 302.0
19 TraesCS1A01G374600 chr6D 91.031 223 20 0 8 230 34590836 34590614 6.770000e-78 302.0
20 TraesCS1A01G374600 chr3A 89.686 223 21 2 8 230 28997329 28997109 2.450000e-72 283.0
21 TraesCS1A01G374600 chr3A 88.393 224 22 4 8 230 28967006 28966786 2.470000e-67 267.0
22 TraesCS1A01G374600 chr2B 86.036 222 28 3 8 228 131837435 131837216 6.960000e-58 235.0
23 TraesCS1A01G374600 chr2B 77.444 133 20 7 2533 2656 548948037 548948168 2.080000e-08 71.3
24 TraesCS1A01G374600 chr4A 87.838 148 18 0 1722 1869 728919542 728919689 1.540000e-39 174.0
25 TraesCS1A01G374600 chr4A 83.544 79 13 0 2622 2700 573361523 573361445 1.610000e-09 75.0
26 TraesCS1A01G374600 chr4D 82.927 82 14 0 2619 2700 29801759 29801840 1.610000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G374600 chr1A 549701523 549705689 4166 False 7696.000000 7696 100.000000 1 4167 1 chr1A.!!$F1 4166
1 TraesCS1A01G374600 chr1D 457047882 457051074 3192 False 2483.900000 4878 92.197000 367 3490 2 chr1D.!!$F2 3123
2 TraesCS1A01G374600 chr1D 457063505 457066377 2872 False 221.333333 292 90.765333 3591 4167 3 chr1D.!!$F3 576
3 TraesCS1A01G374600 chr1B 626656502 626658074 1572 False 2577.000000 2577 96.317000 932 2497 1 chr1B.!!$F2 1565
4 TraesCS1A01G374600 chr1B 626666432 626667831 1399 False 2141.000000 2141 94.385000 2481 3872 1 chr1B.!!$F3 1391
5 TraesCS1A01G374600 chr1B 626651485 626652030 545 False 652.000000 652 88.468000 367 928 1 chr1B.!!$F1 561
6 TraesCS1A01G374600 chr6B 35544194 35545084 890 False 276.500000 318 84.011000 2488 3404 2 chr6B.!!$F1 916
7 TraesCS1A01G374600 chr6B 35557958 35558848 890 False 276.500000 318 84.011000 2488 3404 2 chr6B.!!$F2 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 346 0.037326 GAAGCACCACATCTGGACGA 60.037 55.0 0.0 0.0 40.55 4.20 F
346 347 0.320771 AAGCACCACATCTGGACGAC 60.321 55.0 0.0 0.0 40.55 4.34 F
1308 1329 0.951040 CTCTGGACAAGGACAACGGC 60.951 60.0 0.0 0.0 0.00 5.68 F
2545 2580 1.541310 CCTCGGCTGACAACCACCTA 61.541 60.0 0.0 0.0 0.00 3.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2084 2.866750 TGCCATGCGCAGTAAACG 59.133 55.556 18.32 0.0 44.64 3.60 R
2268 2297 9.525409 AATAGAAAAATCACTGCAATTATGAGC 57.475 29.630 0.00 0.0 0.00 4.26 R
3078 3113 0.880278 AAATCGGCGATCATCACGGG 60.880 55.000 24.20 0.0 0.00 5.28 R
3637 3793 0.381089 CGAGTCCACGGTAGACCATC 59.619 60.000 3.03 0.0 34.67 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.750125 TGATCTATGTAGTATGTTGTGATGAAC 57.250 33.333 0.00 0.00 0.00 3.18
54 55 9.973450 GATCTATGTAGTATGTTGTGATGAACT 57.027 33.333 0.00 0.00 0.00 3.01
71 72 9.888878 GTGATGAACTATGAATAATCAATGTGG 57.111 33.333 0.00 0.00 39.49 4.17
72 73 9.631257 TGATGAACTATGAATAATCAATGTGGT 57.369 29.630 0.00 0.00 39.49 4.16
75 76 8.190122 TGAACTATGAATAATCAATGTGGTTGC 58.810 33.333 0.00 0.00 39.49 4.17
76 77 7.643569 ACTATGAATAATCAATGTGGTTGCA 57.356 32.000 0.00 0.00 39.49 4.08
77 78 8.065473 ACTATGAATAATCAATGTGGTTGCAA 57.935 30.769 0.00 0.00 39.49 4.08
78 79 8.698210 ACTATGAATAATCAATGTGGTTGCAAT 58.302 29.630 0.59 0.00 39.49 3.56
79 80 9.537192 CTATGAATAATCAATGTGGTTGCAATT 57.463 29.630 0.59 0.00 39.49 2.32
80 81 8.795842 ATGAATAATCAATGTGGTTGCAATTT 57.204 26.923 0.59 0.00 39.49 1.82
81 82 8.254178 TGAATAATCAATGTGGTTGCAATTTC 57.746 30.769 0.59 0.00 37.74 2.17
82 83 8.095792 TGAATAATCAATGTGGTTGCAATTTCT 58.904 29.630 0.59 0.00 37.74 2.52
83 84 8.483307 AATAATCAATGTGGTTGCAATTTCTC 57.517 30.769 0.59 0.00 37.74 2.87
84 85 4.255833 TCAATGTGGTTGCAATTTCTCC 57.744 40.909 0.59 0.00 37.74 3.71
85 86 3.006752 TCAATGTGGTTGCAATTTCTCCC 59.993 43.478 0.59 0.00 37.74 4.30
86 87 0.958091 TGTGGTTGCAATTTCTCCCG 59.042 50.000 0.59 0.00 0.00 5.14
87 88 0.388520 GTGGTTGCAATTTCTCCCGC 60.389 55.000 0.59 0.22 0.00 6.13
88 89 1.154035 GGTTGCAATTTCTCCCGCG 60.154 57.895 0.59 0.00 0.00 6.46
89 90 1.582610 GGTTGCAATTTCTCCCGCGA 61.583 55.000 8.23 0.00 0.00 5.87
90 91 0.239879 GTTGCAATTTCTCCCGCGAA 59.760 50.000 8.23 0.00 0.00 4.70
91 92 0.955178 TTGCAATTTCTCCCGCGAAA 59.045 45.000 8.23 0.00 37.31 3.46
92 93 0.521291 TGCAATTTCTCCCGCGAAAG 59.479 50.000 8.23 4.21 36.44 2.62
134 135 9.784531 ACAATTTCATATACAGGGTCTATTCTG 57.215 33.333 0.00 0.00 37.07 3.02
135 136 8.725148 CAATTTCATATACAGGGTCTATTCTGC 58.275 37.037 0.00 0.00 34.57 4.26
136 137 6.994421 TTCATATACAGGGTCTATTCTGCA 57.006 37.500 0.00 0.00 34.57 4.41
137 138 6.596309 TCATATACAGGGTCTATTCTGCAG 57.404 41.667 7.63 7.63 34.57 4.41
138 139 3.760580 ATACAGGGTCTATTCTGCAGC 57.239 47.619 9.47 0.00 34.57 5.25
139 140 0.176680 ACAGGGTCTATTCTGCAGCG 59.823 55.000 9.47 0.00 34.57 5.18
140 141 1.144936 AGGGTCTATTCTGCAGCGC 59.855 57.895 9.47 0.00 0.00 5.92
141 142 1.153369 GGGTCTATTCTGCAGCGCA 60.153 57.895 11.47 3.35 36.92 6.09
142 143 1.432270 GGGTCTATTCTGCAGCGCAC 61.432 60.000 11.47 0.68 33.79 5.34
143 144 1.633171 GTCTATTCTGCAGCGCACG 59.367 57.895 11.47 0.01 33.79 5.34
144 145 0.802222 GTCTATTCTGCAGCGCACGA 60.802 55.000 11.47 0.45 33.79 4.35
145 146 0.103026 TCTATTCTGCAGCGCACGAT 59.897 50.000 11.47 0.00 33.79 3.73
146 147 0.933097 CTATTCTGCAGCGCACGATT 59.067 50.000 11.47 3.12 33.79 3.34
147 148 1.328680 CTATTCTGCAGCGCACGATTT 59.671 47.619 11.47 0.00 33.79 2.17
148 149 0.523072 ATTCTGCAGCGCACGATTTT 59.477 45.000 11.47 0.00 33.79 1.82
149 150 0.385849 TTCTGCAGCGCACGATTTTG 60.386 50.000 11.47 0.00 33.79 2.44
150 151 2.428902 TGCAGCGCACGATTTTGC 60.429 55.556 11.47 9.66 39.28 3.68
151 152 3.174573 GCAGCGCACGATTTTGCC 61.175 61.111 11.47 0.00 39.53 4.52
152 153 2.504681 CAGCGCACGATTTTGCCC 60.505 61.111 11.47 0.00 39.53 5.36
153 154 3.747976 AGCGCACGATTTTGCCCC 61.748 61.111 11.47 0.00 39.53 5.80
156 157 4.049640 GCACGATTTTGCCCCGCA 62.050 61.111 0.00 0.00 36.42 5.69
166 167 2.435372 TTGCCCCGCAAAATAGATCT 57.565 45.000 0.00 0.00 45.96 2.75
167 168 2.435372 TGCCCCGCAAAATAGATCTT 57.565 45.000 0.00 0.00 34.76 2.40
168 169 2.297701 TGCCCCGCAAAATAGATCTTC 58.702 47.619 0.00 0.00 34.76 2.87
169 170 1.609072 GCCCCGCAAAATAGATCTTCC 59.391 52.381 0.00 0.00 0.00 3.46
170 171 2.749800 GCCCCGCAAAATAGATCTTCCT 60.750 50.000 0.00 0.00 0.00 3.36
171 172 3.142174 CCCCGCAAAATAGATCTTCCTC 58.858 50.000 0.00 0.00 0.00 3.71
172 173 2.802816 CCCGCAAAATAGATCTTCCTCG 59.197 50.000 0.00 0.00 0.00 4.63
173 174 3.492656 CCCGCAAAATAGATCTTCCTCGA 60.493 47.826 0.00 0.00 0.00 4.04
174 175 4.119862 CCGCAAAATAGATCTTCCTCGAA 58.880 43.478 0.00 0.00 0.00 3.71
175 176 4.025647 CCGCAAAATAGATCTTCCTCGAAC 60.026 45.833 0.00 0.00 0.00 3.95
176 177 4.806247 CGCAAAATAGATCTTCCTCGAACT 59.194 41.667 0.00 0.00 0.00 3.01
177 178 5.977725 CGCAAAATAGATCTTCCTCGAACTA 59.022 40.000 0.00 0.00 0.00 2.24
178 179 6.642950 CGCAAAATAGATCTTCCTCGAACTAT 59.357 38.462 0.00 0.00 32.44 2.12
179 180 7.808381 CGCAAAATAGATCTTCCTCGAACTATA 59.192 37.037 0.00 0.00 31.33 1.31
180 181 9.477484 GCAAAATAGATCTTCCTCGAACTATAA 57.523 33.333 0.00 0.00 31.33 0.98
184 185 9.646427 AATAGATCTTCCTCGAACTATAAATGC 57.354 33.333 0.00 0.00 31.33 3.56
185 186 6.153067 AGATCTTCCTCGAACTATAAATGCG 58.847 40.000 0.00 0.00 0.00 4.73
186 187 5.258456 TCTTCCTCGAACTATAAATGCGT 57.742 39.130 0.00 0.00 0.00 5.24
187 188 5.657474 TCTTCCTCGAACTATAAATGCGTT 58.343 37.500 0.00 0.00 0.00 4.84
188 189 6.798482 TCTTCCTCGAACTATAAATGCGTTA 58.202 36.000 0.00 0.00 0.00 3.18
189 190 7.431249 TCTTCCTCGAACTATAAATGCGTTAT 58.569 34.615 0.00 0.00 36.37 1.89
190 191 7.381408 TCTTCCTCGAACTATAAATGCGTTATG 59.619 37.037 0.00 0.00 34.18 1.90
191 192 5.404366 TCCTCGAACTATAAATGCGTTATGC 59.596 40.000 0.00 0.00 46.70 3.14
200 201 4.639824 GCGTTATGCGGGTCGATA 57.360 55.556 0.00 0.00 41.69 2.92
201 202 3.117589 GCGTTATGCGGGTCGATAT 57.882 52.632 0.00 0.00 41.69 1.63
202 203 1.425412 GCGTTATGCGGGTCGATATT 58.575 50.000 0.00 0.00 41.69 1.28
203 204 2.598589 GCGTTATGCGGGTCGATATTA 58.401 47.619 0.00 0.00 41.69 0.98
204 205 3.184541 GCGTTATGCGGGTCGATATTAT 58.815 45.455 0.00 0.00 41.69 1.28
205 206 4.353737 GCGTTATGCGGGTCGATATTATA 58.646 43.478 0.00 0.00 41.69 0.98
206 207 4.205792 GCGTTATGCGGGTCGATATTATAC 59.794 45.833 0.00 0.00 41.69 1.47
207 208 5.334319 CGTTATGCGGGTCGATATTATACA 58.666 41.667 0.00 0.00 36.85 2.29
208 209 5.454554 CGTTATGCGGGTCGATATTATACAG 59.545 44.000 0.00 0.00 36.85 2.74
209 210 3.861276 TGCGGGTCGATATTATACAGG 57.139 47.619 0.00 0.00 0.00 4.00
210 211 2.494471 TGCGGGTCGATATTATACAGGG 59.506 50.000 0.00 0.00 0.00 4.45
211 212 2.494870 GCGGGTCGATATTATACAGGGT 59.505 50.000 0.00 0.00 0.00 4.34
212 213 3.428589 GCGGGTCGATATTATACAGGGTC 60.429 52.174 0.00 0.00 0.00 4.46
213 214 4.015084 CGGGTCGATATTATACAGGGTCT 58.985 47.826 0.00 0.00 0.00 3.85
214 215 4.142447 CGGGTCGATATTATACAGGGTCTG 60.142 50.000 0.00 0.00 37.52 3.51
215 216 4.381718 GGGTCGATATTATACAGGGTCTGC 60.382 50.000 0.00 0.00 34.37 4.26
216 217 4.463186 GGTCGATATTATACAGGGTCTGCT 59.537 45.833 0.00 0.00 34.37 4.24
217 218 5.651139 GGTCGATATTATACAGGGTCTGCTA 59.349 44.000 0.00 0.00 34.37 3.49
218 219 6.183360 GGTCGATATTATACAGGGTCTGCTAG 60.183 46.154 0.00 0.00 34.37 3.42
219 220 6.598457 GTCGATATTATACAGGGTCTGCTAGA 59.402 42.308 0.00 0.00 34.37 2.43
220 221 6.824196 TCGATATTATACAGGGTCTGCTAGAG 59.176 42.308 0.00 0.00 34.37 2.43
221 222 6.600032 CGATATTATACAGGGTCTGCTAGAGT 59.400 42.308 0.00 0.00 34.37 3.24
222 223 7.121463 CGATATTATACAGGGTCTGCTAGAGTT 59.879 40.741 0.00 0.00 34.37 3.01
223 224 5.854010 TTATACAGGGTCTGCTAGAGTTG 57.146 43.478 0.00 0.00 34.37 3.16
224 225 0.610687 ACAGGGTCTGCTAGAGTTGC 59.389 55.000 0.00 0.00 34.37 4.17
225 226 0.901124 CAGGGTCTGCTAGAGTTGCT 59.099 55.000 0.00 0.00 0.00 3.91
226 227 1.134848 CAGGGTCTGCTAGAGTTGCTC 60.135 57.143 0.00 0.00 0.00 4.26
227 228 1.190643 GGGTCTGCTAGAGTTGCTCT 58.809 55.000 4.02 4.02 43.83 4.09
228 229 1.552792 GGGTCTGCTAGAGTTGCTCTT 59.447 52.381 3.87 0.00 41.50 2.85
229 230 2.761208 GGGTCTGCTAGAGTTGCTCTTA 59.239 50.000 3.87 0.00 41.50 2.10
230 231 3.386402 GGGTCTGCTAGAGTTGCTCTTAT 59.614 47.826 3.87 0.00 41.50 1.73
231 232 4.500716 GGGTCTGCTAGAGTTGCTCTTATC 60.501 50.000 3.87 0.00 41.50 1.75
232 233 4.286910 GTCTGCTAGAGTTGCTCTTATCG 58.713 47.826 3.87 0.00 41.50 2.92
233 234 4.035792 GTCTGCTAGAGTTGCTCTTATCGA 59.964 45.833 3.87 0.00 41.50 3.59
234 235 4.274705 TCTGCTAGAGTTGCTCTTATCGAG 59.725 45.833 3.87 0.00 41.50 4.04
235 236 3.316588 TGCTAGAGTTGCTCTTATCGAGG 59.683 47.826 3.87 0.00 41.50 4.63
236 237 3.566322 GCTAGAGTTGCTCTTATCGAGGA 59.434 47.826 3.87 0.00 41.50 3.71
237 238 4.036971 GCTAGAGTTGCTCTTATCGAGGAA 59.963 45.833 3.87 0.00 46.21 3.36
242 243 3.753294 TGCTCTTATCGAGGAATTCCC 57.247 47.619 21.22 11.43 37.13 3.97
253 254 3.760580 AGGAATTCCCTGATCGATGTC 57.239 47.619 21.22 0.00 45.61 3.06
254 255 3.312890 AGGAATTCCCTGATCGATGTCT 58.687 45.455 21.22 0.00 45.61 3.41
255 256 3.713764 AGGAATTCCCTGATCGATGTCTT 59.286 43.478 21.22 0.00 45.61 3.01
256 257 4.061596 GGAATTCCCTGATCGATGTCTTC 58.938 47.826 14.03 0.00 0.00 2.87
257 258 7.466670 AGGAATTCCCTGATCGATGTCTTCG 62.467 48.000 21.22 1.81 45.61 3.79
282 283 3.503365 TCGGAGAGTCTAAGGGAAAACA 58.497 45.455 0.00 0.00 0.00 2.83
283 284 3.510360 TCGGAGAGTCTAAGGGAAAACAG 59.490 47.826 0.00 0.00 0.00 3.16
284 285 3.510360 CGGAGAGTCTAAGGGAAAACAGA 59.490 47.826 0.00 0.00 0.00 3.41
285 286 4.021368 CGGAGAGTCTAAGGGAAAACAGAA 60.021 45.833 0.00 0.00 0.00 3.02
286 287 5.337652 CGGAGAGTCTAAGGGAAAACAGAAT 60.338 44.000 0.00 0.00 0.00 2.40
287 288 6.477253 GGAGAGTCTAAGGGAAAACAGAATT 58.523 40.000 0.00 0.00 0.00 2.17
288 289 6.596106 GGAGAGTCTAAGGGAAAACAGAATTC 59.404 42.308 0.00 0.00 0.00 2.17
289 290 6.166982 AGAGTCTAAGGGAAAACAGAATTCG 58.833 40.000 0.00 0.00 0.00 3.34
290 291 5.246307 AGTCTAAGGGAAAACAGAATTCGG 58.754 41.667 3.87 3.87 0.00 4.30
291 292 5.001874 GTCTAAGGGAAAACAGAATTCGGT 58.998 41.667 5.32 5.32 0.00 4.69
292 293 5.121925 GTCTAAGGGAAAACAGAATTCGGTC 59.878 44.000 11.76 0.00 0.00 4.79
293 294 3.790089 AGGGAAAACAGAATTCGGTCT 57.210 42.857 11.76 2.59 0.00 3.85
294 295 3.676093 AGGGAAAACAGAATTCGGTCTC 58.324 45.455 11.76 10.97 0.00 3.36
295 296 2.747989 GGGAAAACAGAATTCGGTCTCC 59.252 50.000 21.63 21.63 0.00 3.71
296 297 2.747989 GGAAAACAGAATTCGGTCTCCC 59.252 50.000 20.22 14.03 0.00 4.30
297 298 3.559384 GGAAAACAGAATTCGGTCTCCCT 60.559 47.826 20.22 2.39 0.00 4.20
298 299 3.790089 AAACAGAATTCGGTCTCCCTT 57.210 42.857 11.76 0.00 0.00 3.95
299 300 4.903045 AAACAGAATTCGGTCTCCCTTA 57.097 40.909 11.76 0.00 0.00 2.69
300 301 4.903045 AACAGAATTCGGTCTCCCTTAA 57.097 40.909 11.76 0.00 0.00 1.85
301 302 4.473477 ACAGAATTCGGTCTCCCTTAAG 57.527 45.455 5.32 0.00 0.00 1.85
302 303 3.197983 ACAGAATTCGGTCTCCCTTAAGG 59.802 47.826 15.14 15.14 0.00 2.69
318 319 6.715347 CCTTAAGGGGGAAACATAGAATTG 57.285 41.667 14.25 0.00 0.00 2.32
319 320 6.194967 CCTTAAGGGGGAAACATAGAATTGT 58.805 40.000 14.25 0.00 0.00 2.71
320 321 6.321435 CCTTAAGGGGGAAACATAGAATTGTC 59.679 42.308 14.25 0.00 0.00 3.18
321 322 4.251103 AGGGGGAAACATAGAATTGTCC 57.749 45.455 0.00 0.00 0.00 4.02
322 323 3.596046 AGGGGGAAACATAGAATTGTCCA 59.404 43.478 0.00 0.00 0.00 4.02
323 324 4.045334 AGGGGGAAACATAGAATTGTCCAA 59.955 41.667 0.00 0.00 0.00 3.53
324 325 4.159693 GGGGGAAACATAGAATTGTCCAAC 59.840 45.833 0.00 0.00 0.00 3.77
325 326 5.016831 GGGGAAACATAGAATTGTCCAACT 58.983 41.667 0.00 0.00 0.00 3.16
326 327 5.105756 GGGGAAACATAGAATTGTCCAACTG 60.106 44.000 0.00 0.00 0.00 3.16
327 328 5.710099 GGGAAACATAGAATTGTCCAACTGA 59.290 40.000 0.00 0.00 0.00 3.41
328 329 6.208599 GGGAAACATAGAATTGTCCAACTGAA 59.791 38.462 0.00 0.00 0.00 3.02
329 330 7.308435 GGAAACATAGAATTGTCCAACTGAAG 58.692 38.462 0.00 0.00 0.00 3.02
330 331 5.886960 ACATAGAATTGTCCAACTGAAGC 57.113 39.130 0.00 0.00 0.00 3.86
331 332 5.316167 ACATAGAATTGTCCAACTGAAGCA 58.684 37.500 0.00 0.00 0.00 3.91
332 333 5.182001 ACATAGAATTGTCCAACTGAAGCAC 59.818 40.000 0.00 0.00 0.00 4.40
333 334 2.887152 AGAATTGTCCAACTGAAGCACC 59.113 45.455 0.00 0.00 0.00 5.01
334 335 2.363306 ATTGTCCAACTGAAGCACCA 57.637 45.000 0.00 0.00 0.00 4.17
335 336 1.388547 TTGTCCAACTGAAGCACCAC 58.611 50.000 0.00 0.00 0.00 4.16
336 337 0.254462 TGTCCAACTGAAGCACCACA 59.746 50.000 0.00 0.00 0.00 4.17
337 338 1.133823 TGTCCAACTGAAGCACCACAT 60.134 47.619 0.00 0.00 0.00 3.21
338 339 1.537202 GTCCAACTGAAGCACCACATC 59.463 52.381 0.00 0.00 0.00 3.06
339 340 1.421268 TCCAACTGAAGCACCACATCT 59.579 47.619 0.00 0.00 0.00 2.90
340 341 1.538512 CCAACTGAAGCACCACATCTG 59.461 52.381 0.00 0.00 0.00 2.90
341 342 1.538512 CAACTGAAGCACCACATCTGG 59.461 52.381 0.00 0.00 44.26 3.86
342 343 1.059098 ACTGAAGCACCACATCTGGA 58.941 50.000 0.00 0.00 40.55 3.86
343 344 1.271054 ACTGAAGCACCACATCTGGAC 60.271 52.381 0.00 0.00 40.55 4.02
344 345 0.320683 TGAAGCACCACATCTGGACG 60.321 55.000 0.00 0.00 40.55 4.79
345 346 0.037326 GAAGCACCACATCTGGACGA 60.037 55.000 0.00 0.00 40.55 4.20
346 347 0.320771 AAGCACCACATCTGGACGAC 60.321 55.000 0.00 0.00 40.55 4.34
347 348 1.188219 AGCACCACATCTGGACGACT 61.188 55.000 0.00 0.00 40.55 4.18
348 349 0.320771 GCACCACATCTGGACGACTT 60.321 55.000 0.00 0.00 40.55 3.01
349 350 1.432514 CACCACATCTGGACGACTTG 58.567 55.000 0.00 0.00 40.55 3.16
350 351 1.048601 ACCACATCTGGACGACTTGT 58.951 50.000 0.00 0.00 40.55 3.16
351 352 2.029380 CACCACATCTGGACGACTTGTA 60.029 50.000 0.00 0.00 40.55 2.41
352 353 2.631062 ACCACATCTGGACGACTTGTAA 59.369 45.455 0.00 0.00 40.55 2.41
353 354 3.070446 ACCACATCTGGACGACTTGTAAA 59.930 43.478 0.00 0.00 40.55 2.01
354 355 4.062293 CCACATCTGGACGACTTGTAAAA 58.938 43.478 0.00 0.00 40.55 1.52
355 356 4.513692 CCACATCTGGACGACTTGTAAAAA 59.486 41.667 0.00 0.00 40.55 1.94
458 459 3.538379 GGAAAGGCCCAAAGCATTG 57.462 52.632 0.00 0.00 46.79 2.82
549 550 2.271173 GACCACCCACCGATTCCC 59.729 66.667 0.00 0.00 0.00 3.97
656 657 2.565841 GTCTTCGCAGCCTGGATTTAT 58.434 47.619 0.00 0.00 0.00 1.40
665 666 4.563580 GCAGCCTGGATTTATCGGAATAGA 60.564 45.833 0.00 0.00 0.00 1.98
859 879 2.141517 GGATGGTCGCTGATTCATGAG 58.858 52.381 0.00 0.00 0.00 2.90
902 922 2.293955 GCCCGTGGTTAGATCTCTAGAC 59.706 54.545 0.00 0.00 0.00 2.59
984 1005 7.124147 TGAATTCCTCTGACAATTTTTATCCCC 59.876 37.037 2.27 0.00 0.00 4.81
1042 1063 4.290093 TGCTTCTGATCCTAAGAGGCTAA 58.710 43.478 14.22 0.00 44.62 3.09
1256 1277 4.665833 TTCTTGACCGTCTCAAAGAGAA 57.334 40.909 0.00 0.00 40.59 2.87
1308 1329 0.951040 CTCTGGACAAGGACAACGGC 60.951 60.000 0.00 0.00 0.00 5.68
1430 1451 6.515272 TTTTTCCATCTATGAAGGAACTGC 57.485 37.500 4.08 0.00 38.82 4.40
1772 1793 4.600062 TCCTTTTGATAAGGGAGCCTTTC 58.400 43.478 1.83 0.00 41.69 2.62
1819 1840 2.417933 CGCTATTGAACTTTGCTCTGCT 59.582 45.455 0.00 0.00 0.00 4.24
1871 1892 7.566760 TGATTCGTGGTATGATTTGCTATTT 57.433 32.000 0.00 0.00 0.00 1.40
1884 1905 9.846248 ATGATTTGCTATTTAACACTCAAAGTC 57.154 29.630 0.00 0.00 0.00 3.01
1887 1908 7.817418 TTGCTATTTAACACTCAAAGTCCTT 57.183 32.000 0.00 0.00 0.00 3.36
1888 1909 7.435068 TGCTATTTAACACTCAAAGTCCTTC 57.565 36.000 0.00 0.00 0.00 3.46
1890 1911 7.500892 TGCTATTTAACACTCAAAGTCCTTCAA 59.499 33.333 0.00 0.00 0.00 2.69
1892 1913 9.884465 CTATTTAACACTCAAAGTCCTTCAAAG 57.116 33.333 0.00 0.00 0.00 2.77
2055 2084 7.509546 TGGAATGTTACCTATCTTCCAGAATC 58.490 38.462 0.00 0.00 40.21 2.52
2063 2092 6.574350 ACCTATCTTCCAGAATCGTTTACTG 58.426 40.000 0.00 0.00 0.00 2.74
2064 2093 5.463724 CCTATCTTCCAGAATCGTTTACTGC 59.536 44.000 0.00 0.00 0.00 4.40
2289 2318 9.309516 CATAAGCTCATAATTGCAGTGATTTTT 57.690 29.630 0.00 0.00 0.00 1.94
2354 2383 7.156000 TGTATGTAAAAACTACAGTGCTGCTA 58.844 34.615 0.00 0.00 0.00 3.49
2446 2475 9.809096 TTTTTATGTTATGTTTGCTGAGAAACA 57.191 25.926 10.87 10.87 46.93 2.83
2545 2580 1.541310 CCTCGGCTGACAACCACCTA 61.541 60.000 0.00 0.00 0.00 3.08
2815 2850 4.101585 ACTGATGGTGAGAGTTGTCAAGAA 59.898 41.667 0.00 0.00 0.00 2.52
2929 2964 4.000988 TCATTAAGAGGCCGAGAACAAAC 58.999 43.478 0.00 0.00 0.00 2.93
3014 3049 5.880332 TCAAGTTCCCCTGAAATAATCTTCG 59.120 40.000 0.00 0.00 30.79 3.79
3250 3310 0.250381 CATGCTCCTGATGCTCCCTC 60.250 60.000 0.00 0.00 0.00 4.30
3263 3329 3.731431 TGCTCCCTCCCTGATTAGTTAA 58.269 45.455 0.00 0.00 0.00 2.01
3264 3330 3.711704 TGCTCCCTCCCTGATTAGTTAAG 59.288 47.826 0.00 0.00 0.00 1.85
3265 3331 3.712218 GCTCCCTCCCTGATTAGTTAAGT 59.288 47.826 0.00 0.00 0.00 2.24
3266 3332 4.202274 GCTCCCTCCCTGATTAGTTAAGTC 60.202 50.000 0.00 0.00 0.00 3.01
3267 3333 5.212745 CTCCCTCCCTGATTAGTTAAGTCT 58.787 45.833 0.00 0.00 0.00 3.24
3268 3334 5.209659 TCCCTCCCTGATTAGTTAAGTCTC 58.790 45.833 0.00 0.00 0.00 3.36
3269 3335 4.962995 CCCTCCCTGATTAGTTAAGTCTCA 59.037 45.833 0.00 0.00 0.00 3.27
3270 3336 5.163395 CCCTCCCTGATTAGTTAAGTCTCAC 60.163 48.000 0.00 0.00 0.00 3.51
3271 3337 5.659079 CCTCCCTGATTAGTTAAGTCTCACT 59.341 44.000 0.00 0.00 0.00 3.41
3327 3394 4.334759 CCAGGAGCAATGCTGTATATATGC 59.665 45.833 14.48 0.00 39.88 3.14
3448 3601 5.510671 ACTGAGTGTTAAATTGTCGCAAAG 58.489 37.500 0.00 0.00 0.00 2.77
3450 3603 6.125327 TGAGTGTTAAATTGTCGCAAAGAA 57.875 33.333 0.00 0.00 0.00 2.52
3451 3604 6.734137 TGAGTGTTAAATTGTCGCAAAGAAT 58.266 32.000 0.00 0.00 0.00 2.40
3452 3605 7.199766 TGAGTGTTAAATTGTCGCAAAGAATT 58.800 30.769 0.00 0.00 32.51 2.17
3540 3696 6.961359 ACTTTGTTGAACTTTAGTTTTGGC 57.039 33.333 0.00 0.00 38.56 4.52
3555 3711 0.320771 TTGGCGCTTCTCCAAGACTC 60.321 55.000 7.64 0.00 38.57 3.36
3596 3752 2.095617 TGACGAAACTCGCGAATCTACA 60.096 45.455 11.33 8.73 45.12 2.74
3637 3793 6.402983 GGAGCACAATCTGAAACACTAGAATG 60.403 42.308 0.00 0.00 31.69 2.67
3672 3828 6.505888 CGTGGACTCGTGAATTTAATTACTCG 60.506 42.308 0.00 0.00 0.00 4.18
3686 3842 0.320683 TACTCGAGGTTCACCGACGA 60.321 55.000 18.41 16.21 43.04 4.20
3779 3935 1.002544 GATCCGGGGATCTGAATGTCC 59.997 57.143 18.37 0.00 45.42 4.02
3806 3962 3.983344 CCACTTGGCAAAGAAAAGAATCG 59.017 43.478 8.15 0.00 36.84 3.34
3827 3983 6.696441 TCGTCTTCCCTTCTTAGATTAGAC 57.304 41.667 0.00 0.00 0.00 2.59
3843 3999 2.349297 AGACGAGGAAACGTGCTTAG 57.651 50.000 0.00 0.00 46.52 2.18
3845 4001 2.816087 AGACGAGGAAACGTGCTTAGTA 59.184 45.455 0.00 0.00 46.52 1.82
3878 4046 3.428870 AGTCGTTCGATGATGTCAACAAC 59.571 43.478 0.00 0.00 0.00 3.32
3890 4058 2.093394 TGTCAACAACTGTCGAAAGGGA 60.093 45.455 7.69 0.00 0.00 4.20
3901 4069 2.423538 GTCGAAAGGGAAATGGACATGG 59.576 50.000 0.00 0.00 0.00 3.66
3903 4071 2.423538 CGAAAGGGAAATGGACATGGAC 59.576 50.000 0.00 0.00 0.00 4.02
3904 4072 3.430453 GAAAGGGAAATGGACATGGACA 58.570 45.455 0.00 0.00 0.00 4.02
3905 4073 2.814805 AGGGAAATGGACATGGACAG 57.185 50.000 0.00 0.00 0.00 3.51
3907 4075 1.106285 GGAAATGGACATGGACAGGC 58.894 55.000 0.00 0.00 0.00 4.85
3908 4076 1.616725 GGAAATGGACATGGACAGGCA 60.617 52.381 0.00 0.00 0.00 4.75
3910 4078 0.682209 AATGGACATGGACAGGCAGC 60.682 55.000 0.00 0.00 0.00 5.25
3911 4079 2.439156 GGACATGGACAGGCAGCC 60.439 66.667 1.84 1.84 0.00 4.85
3912 4080 2.821366 GACATGGACAGGCAGCCG 60.821 66.667 5.55 3.56 0.00 5.52
3913 4081 3.612247 GACATGGACAGGCAGCCGT 62.612 63.158 5.55 7.25 0.00 5.68
3914 4082 2.821366 CATGGACAGGCAGCCGTC 60.821 66.667 21.49 21.49 0.00 4.79
3915 4083 3.321648 ATGGACAGGCAGCCGTCA 61.322 61.111 27.09 16.33 32.00 4.35
3916 4084 3.612247 ATGGACAGGCAGCCGTCAC 62.612 63.158 27.09 19.76 32.00 3.67
3974 4697 3.118223 CCTACCTGACAGGGATTCTTTCC 60.118 52.174 25.34 0.00 40.58 3.13
4005 6471 3.223157 CGCCGTTAGTAAAGCTTGTTTG 58.777 45.455 0.00 0.00 0.00 2.93
4029 6495 1.377202 TGGGCTTCCATCTCAACGC 60.377 57.895 0.00 0.00 35.21 4.84
4039 6505 3.755905 TCCATCTCAACGCAGCAATTTTA 59.244 39.130 0.00 0.00 0.00 1.52
4063 6529 4.630111 TGCAACCCATAAGCTTGAAAAAG 58.370 39.130 9.86 0.00 0.00 2.27
4077 6543 3.731089 TGAAAAAGCAATGGCCAAGAAG 58.269 40.909 10.96 0.32 42.56 2.85
4092 6558 4.329256 GCCAAGAAGTCGTTAATGTAGACC 59.671 45.833 0.00 0.00 35.65 3.85
4104 6570 3.526931 ATGTAGACCACAAGATGTCGG 57.473 47.619 0.00 0.00 41.55 4.79
4111 6577 0.792640 CACAAGATGTCGGCAGTCAC 59.207 55.000 0.00 0.00 0.00 3.67
4114 6580 0.532573 AAGATGTCGGCAGTCACGAT 59.467 50.000 0.00 0.00 42.82 3.73
4116 6582 1.202973 GATGTCGGCAGTCACGATCG 61.203 60.000 14.88 14.88 42.82 3.69
4117 6583 1.654023 ATGTCGGCAGTCACGATCGA 61.654 55.000 24.34 0.00 42.82 3.59
4137 6603 6.003234 TCGAGAAAGATCGCTATCCTAAAG 57.997 41.667 0.00 0.00 42.43 1.85
4146 6613 6.550108 AGATCGCTATCCTAAAGAGTTGGTAA 59.450 38.462 0.00 0.00 31.98 2.85
4151 6618 4.796038 TCCTAAAGAGTTGGTAACGAGG 57.204 45.455 0.00 0.00 42.51 4.63
4155 6622 3.611766 AAGAGTTGGTAACGAGGATGG 57.388 47.619 0.00 0.00 42.51 3.51
4156 6623 1.207329 AGAGTTGGTAACGAGGATGGC 59.793 52.381 0.00 0.00 42.51 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.750125 GTTCATCACAACATACTACATAGATCA 57.250 33.333 0.00 0.00 0.00 2.92
28 29 9.973450 AGTTCATCACAACATACTACATAGATC 57.027 33.333 0.00 0.00 0.00 2.75
45 46 9.888878 CCACATTGATTATTCATAGTTCATCAC 57.111 33.333 0.00 0.00 0.00 3.06
46 47 9.631257 ACCACATTGATTATTCATAGTTCATCA 57.369 29.630 0.00 0.00 0.00 3.07
49 50 8.190122 GCAACCACATTGATTATTCATAGTTCA 58.810 33.333 0.00 0.00 41.23 3.18
50 51 8.190122 TGCAACCACATTGATTATTCATAGTTC 58.810 33.333 0.00 0.00 41.23 3.01
51 52 8.065473 TGCAACCACATTGATTATTCATAGTT 57.935 30.769 0.00 0.00 41.23 2.24
52 53 7.643569 TGCAACCACATTGATTATTCATAGT 57.356 32.000 0.00 0.00 41.23 2.12
53 54 9.537192 AATTGCAACCACATTGATTATTCATAG 57.463 29.630 0.00 0.00 41.23 2.23
54 55 9.887629 AAATTGCAACCACATTGATTATTCATA 57.112 25.926 0.00 0.00 41.23 2.15
55 56 8.795842 AAATTGCAACCACATTGATTATTCAT 57.204 26.923 0.00 0.00 41.23 2.57
56 57 8.095792 AGAAATTGCAACCACATTGATTATTCA 58.904 29.630 0.00 0.00 41.23 2.57
57 58 8.483307 AGAAATTGCAACCACATTGATTATTC 57.517 30.769 0.00 0.00 41.23 1.75
58 59 7.550196 GGAGAAATTGCAACCACATTGATTATT 59.450 33.333 0.00 0.00 41.23 1.40
59 60 7.043565 GGAGAAATTGCAACCACATTGATTAT 58.956 34.615 0.00 0.00 41.23 1.28
60 61 6.397272 GGAGAAATTGCAACCACATTGATTA 58.603 36.000 0.00 0.00 41.23 1.75
61 62 5.240121 GGAGAAATTGCAACCACATTGATT 58.760 37.500 0.00 0.00 41.23 2.57
62 63 4.322953 GGGAGAAATTGCAACCACATTGAT 60.323 41.667 0.00 0.00 41.23 2.57
63 64 3.006752 GGGAGAAATTGCAACCACATTGA 59.993 43.478 0.00 0.00 41.23 2.57
64 65 3.328505 GGGAGAAATTGCAACCACATTG 58.671 45.455 0.00 0.00 41.69 2.82
65 66 2.029110 CGGGAGAAATTGCAACCACATT 60.029 45.455 0.00 0.00 0.00 2.71
66 67 1.545582 CGGGAGAAATTGCAACCACAT 59.454 47.619 0.00 0.00 0.00 3.21
67 68 0.958091 CGGGAGAAATTGCAACCACA 59.042 50.000 0.00 0.00 0.00 4.17
68 69 0.388520 GCGGGAGAAATTGCAACCAC 60.389 55.000 0.00 0.00 0.00 4.16
69 70 1.861542 CGCGGGAGAAATTGCAACCA 61.862 55.000 0.00 0.00 0.00 3.67
70 71 1.154035 CGCGGGAGAAATTGCAACC 60.154 57.895 0.00 0.00 0.00 3.77
71 72 0.239879 TTCGCGGGAGAAATTGCAAC 59.760 50.000 6.13 0.00 0.00 4.17
72 73 0.955178 TTTCGCGGGAGAAATTGCAA 59.045 45.000 6.13 0.00 35.44 4.08
73 74 0.521291 CTTTCGCGGGAGAAATTGCA 59.479 50.000 6.13 0.00 39.13 4.08
74 75 0.798389 GCTTTCGCGGGAGAAATTGC 60.798 55.000 6.13 0.00 39.13 3.56
75 76 0.804989 AGCTTTCGCGGGAGAAATTG 59.195 50.000 6.13 0.00 39.13 2.32
76 77 1.534729 AAGCTTTCGCGGGAGAAATT 58.465 45.000 6.13 0.00 39.13 1.82
77 78 1.534729 AAAGCTTTCGCGGGAGAAAT 58.465 45.000 5.69 0.00 39.13 2.17
78 79 1.314730 AAAAGCTTTCGCGGGAGAAA 58.685 45.000 13.10 0.00 42.32 2.52
79 80 1.314730 AAAAAGCTTTCGCGGGAGAA 58.685 45.000 13.10 0.00 42.32 2.87
80 81 3.015516 AAAAAGCTTTCGCGGGAGA 57.984 47.368 13.10 0.00 42.32 3.71
108 109 9.784531 CAGAATAGACCCTGTATATGAAATTGT 57.215 33.333 0.00 0.00 0.00 2.71
109 110 8.725148 GCAGAATAGACCCTGTATATGAAATTG 58.275 37.037 0.00 0.00 33.19 2.32
110 111 8.439971 TGCAGAATAGACCCTGTATATGAAATT 58.560 33.333 0.00 0.00 33.19 1.82
111 112 7.977818 TGCAGAATAGACCCTGTATATGAAAT 58.022 34.615 0.00 0.00 33.19 2.17
112 113 7.373617 TGCAGAATAGACCCTGTATATGAAA 57.626 36.000 0.00 0.00 33.19 2.69
113 114 6.519043 GCTGCAGAATAGACCCTGTATATGAA 60.519 42.308 20.43 0.00 33.19 2.57
114 115 5.047021 GCTGCAGAATAGACCCTGTATATGA 60.047 44.000 20.43 0.00 33.19 2.15
115 116 5.174395 GCTGCAGAATAGACCCTGTATATG 58.826 45.833 20.43 0.00 33.19 1.78
116 117 4.081972 CGCTGCAGAATAGACCCTGTATAT 60.082 45.833 20.43 0.00 33.19 0.86
117 118 3.255888 CGCTGCAGAATAGACCCTGTATA 59.744 47.826 20.43 0.00 33.19 1.47
118 119 2.036475 CGCTGCAGAATAGACCCTGTAT 59.964 50.000 20.43 0.00 33.19 2.29
119 120 1.409064 CGCTGCAGAATAGACCCTGTA 59.591 52.381 20.43 0.00 33.19 2.74
120 121 0.176680 CGCTGCAGAATAGACCCTGT 59.823 55.000 20.43 0.00 33.19 4.00
121 122 1.156645 GCGCTGCAGAATAGACCCTG 61.157 60.000 20.43 0.00 0.00 4.45
122 123 1.144936 GCGCTGCAGAATAGACCCT 59.855 57.895 20.43 0.00 0.00 4.34
123 124 1.153369 TGCGCTGCAGAATAGACCC 60.153 57.895 20.43 0.00 33.32 4.46
124 125 1.756375 CGTGCGCTGCAGAATAGACC 61.756 60.000 20.43 0.00 40.08 3.85
125 126 0.802222 TCGTGCGCTGCAGAATAGAC 60.802 55.000 20.43 4.85 40.08 2.59
126 127 0.103026 ATCGTGCGCTGCAGAATAGA 59.897 50.000 20.43 9.76 40.08 1.98
127 128 0.933097 AATCGTGCGCTGCAGAATAG 59.067 50.000 20.43 6.22 40.08 1.73
128 129 1.368641 AAATCGTGCGCTGCAGAATA 58.631 45.000 20.43 0.00 40.08 1.75
129 130 0.523072 AAAATCGTGCGCTGCAGAAT 59.477 45.000 20.43 0.00 40.08 2.40
130 131 0.385849 CAAAATCGTGCGCTGCAGAA 60.386 50.000 20.43 0.00 40.08 3.02
131 132 1.207339 CAAAATCGTGCGCTGCAGA 59.793 52.632 20.43 2.81 40.08 4.26
132 133 2.430942 GCAAAATCGTGCGCTGCAG 61.431 57.895 10.11 10.11 40.08 4.41
133 134 2.428902 GCAAAATCGTGCGCTGCA 60.429 55.556 9.73 0.00 34.21 4.41
134 135 3.174573 GGCAAAATCGTGCGCTGC 61.175 61.111 9.73 8.12 45.91 5.25
139 140 3.565910 TTGCGGGGCAAAATCGTGC 62.566 57.895 0.00 0.00 45.96 5.34
140 141 2.647875 TTGCGGGGCAAAATCGTG 59.352 55.556 0.00 0.00 45.96 4.35
148 149 2.297701 GAAGATCTATTTTGCGGGGCA 58.702 47.619 0.00 0.00 36.47 5.36
149 150 1.609072 GGAAGATCTATTTTGCGGGGC 59.391 52.381 0.00 0.00 0.00 5.80
150 151 3.142174 GAGGAAGATCTATTTTGCGGGG 58.858 50.000 0.00 0.00 0.00 5.73
151 152 2.802816 CGAGGAAGATCTATTTTGCGGG 59.197 50.000 0.00 0.00 0.00 6.13
152 153 3.717707 TCGAGGAAGATCTATTTTGCGG 58.282 45.455 0.00 0.00 0.00 5.69
153 154 4.806247 AGTTCGAGGAAGATCTATTTTGCG 59.194 41.667 0.00 0.00 0.00 4.85
154 155 7.954788 ATAGTTCGAGGAAGATCTATTTTGC 57.045 36.000 0.00 0.00 32.29 3.68
158 159 9.646427 GCATTTATAGTTCGAGGAAGATCTATT 57.354 33.333 0.00 0.00 35.74 1.73
159 160 7.971168 CGCATTTATAGTTCGAGGAAGATCTAT 59.029 37.037 0.00 3.90 37.13 1.98
160 161 7.040617 ACGCATTTATAGTTCGAGGAAGATCTA 60.041 37.037 0.00 0.00 0.00 1.98
161 162 6.153067 CGCATTTATAGTTCGAGGAAGATCT 58.847 40.000 0.00 0.00 0.00 2.75
162 163 5.921408 ACGCATTTATAGTTCGAGGAAGATC 59.079 40.000 0.00 0.00 0.00 2.75
163 164 5.844004 ACGCATTTATAGTTCGAGGAAGAT 58.156 37.500 0.00 0.00 0.00 2.40
164 165 5.258456 ACGCATTTATAGTTCGAGGAAGA 57.742 39.130 0.00 0.00 0.00 2.87
165 166 5.968387 AACGCATTTATAGTTCGAGGAAG 57.032 39.130 0.00 0.00 0.00 3.46
166 167 6.073980 GCATAACGCATTTATAGTTCGAGGAA 60.074 38.462 0.00 0.00 41.79 3.36
167 168 5.404366 GCATAACGCATTTATAGTTCGAGGA 59.596 40.000 0.00 0.00 41.79 3.71
168 169 5.609088 GCATAACGCATTTATAGTTCGAGG 58.391 41.667 0.00 0.00 41.79 4.63
169 170 5.298083 CGCATAACGCATTTATAGTTCGAG 58.702 41.667 0.00 0.00 42.60 4.04
170 171 4.149221 CCGCATAACGCATTTATAGTTCGA 59.851 41.667 0.00 0.00 42.60 3.71
171 172 4.382831 CCGCATAACGCATTTATAGTTCG 58.617 43.478 0.00 0.00 42.60 3.95
172 173 4.212636 ACCCGCATAACGCATTTATAGTTC 59.787 41.667 0.00 0.00 42.60 3.01
173 174 4.131596 ACCCGCATAACGCATTTATAGTT 58.868 39.130 0.00 0.00 42.60 2.24
174 175 3.735591 ACCCGCATAACGCATTTATAGT 58.264 40.909 0.00 0.00 42.60 2.12
175 176 3.181534 CGACCCGCATAACGCATTTATAG 60.182 47.826 0.00 0.00 42.60 1.31
176 177 2.732500 CGACCCGCATAACGCATTTATA 59.267 45.455 0.00 0.00 42.60 0.98
177 178 1.529438 CGACCCGCATAACGCATTTAT 59.471 47.619 0.00 0.00 42.60 1.40
178 179 0.931702 CGACCCGCATAACGCATTTA 59.068 50.000 0.00 0.00 42.60 1.40
179 180 0.741574 TCGACCCGCATAACGCATTT 60.742 50.000 0.00 0.00 42.60 2.32
180 181 0.531974 ATCGACCCGCATAACGCATT 60.532 50.000 0.00 0.00 42.60 3.56
181 182 0.315886 TATCGACCCGCATAACGCAT 59.684 50.000 0.00 0.00 42.60 4.73
182 183 0.315886 ATATCGACCCGCATAACGCA 59.684 50.000 0.00 0.00 42.60 5.24
183 184 1.425412 AATATCGACCCGCATAACGC 58.575 50.000 0.00 0.00 41.76 4.84
184 185 5.334319 TGTATAATATCGACCCGCATAACG 58.666 41.667 0.00 0.00 43.15 3.18
185 186 5.747197 CCTGTATAATATCGACCCGCATAAC 59.253 44.000 0.00 0.00 0.00 1.89
186 187 5.163488 CCCTGTATAATATCGACCCGCATAA 60.163 44.000 0.00 0.00 0.00 1.90
187 188 4.340097 CCCTGTATAATATCGACCCGCATA 59.660 45.833 0.00 0.00 0.00 3.14
188 189 3.132289 CCCTGTATAATATCGACCCGCAT 59.868 47.826 0.00 0.00 0.00 4.73
189 190 2.494471 CCCTGTATAATATCGACCCGCA 59.506 50.000 0.00 0.00 0.00 5.69
190 191 2.494870 ACCCTGTATAATATCGACCCGC 59.505 50.000 0.00 0.00 0.00 6.13
191 192 4.015084 AGACCCTGTATAATATCGACCCG 58.985 47.826 0.00 0.00 0.00 5.28
192 193 4.381718 GCAGACCCTGTATAATATCGACCC 60.382 50.000 0.00 0.00 33.43 4.46
193 194 4.463186 AGCAGACCCTGTATAATATCGACC 59.537 45.833 0.00 0.00 33.43 4.79
194 195 5.646577 AGCAGACCCTGTATAATATCGAC 57.353 43.478 0.00 0.00 33.43 4.20
195 196 6.718294 TCTAGCAGACCCTGTATAATATCGA 58.282 40.000 0.00 0.00 33.43 3.59
196 197 6.600032 ACTCTAGCAGACCCTGTATAATATCG 59.400 42.308 0.00 0.00 33.43 2.92
197 198 7.948034 ACTCTAGCAGACCCTGTATAATATC 57.052 40.000 0.00 0.00 33.43 1.63
198 199 7.310113 GCAACTCTAGCAGACCCTGTATAATAT 60.310 40.741 0.00 0.00 33.43 1.28
199 200 6.015350 GCAACTCTAGCAGACCCTGTATAATA 60.015 42.308 0.00 0.00 33.43 0.98
200 201 5.221541 GCAACTCTAGCAGACCCTGTATAAT 60.222 44.000 0.00 0.00 33.43 1.28
201 202 4.099573 GCAACTCTAGCAGACCCTGTATAA 59.900 45.833 0.00 0.00 33.43 0.98
202 203 3.637229 GCAACTCTAGCAGACCCTGTATA 59.363 47.826 0.00 0.00 33.43 1.47
203 204 2.432510 GCAACTCTAGCAGACCCTGTAT 59.567 50.000 0.00 0.00 33.43 2.29
204 205 1.825474 GCAACTCTAGCAGACCCTGTA 59.175 52.381 0.00 0.00 33.43 2.74
205 206 0.610687 GCAACTCTAGCAGACCCTGT 59.389 55.000 0.00 0.00 33.43 4.00
206 207 0.901124 AGCAACTCTAGCAGACCCTG 59.099 55.000 0.00 0.00 34.12 4.45
207 208 1.190643 GAGCAACTCTAGCAGACCCT 58.809 55.000 0.00 0.00 0.00 4.34
208 209 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
209 210 4.616953 GATAAGAGCAACTCTAGCAGACC 58.383 47.826 0.00 0.00 40.28 3.85
210 211 4.035792 TCGATAAGAGCAACTCTAGCAGAC 59.964 45.833 0.00 0.00 40.28 3.51
211 212 4.200092 TCGATAAGAGCAACTCTAGCAGA 58.800 43.478 0.00 0.00 40.28 4.26
212 213 4.536065 CTCGATAAGAGCAACTCTAGCAG 58.464 47.826 0.00 0.00 40.28 4.24
213 214 3.316588 CCTCGATAAGAGCAACTCTAGCA 59.683 47.826 0.00 0.00 45.54 3.49
214 215 3.566322 TCCTCGATAAGAGCAACTCTAGC 59.434 47.826 0.00 0.00 45.54 3.42
215 216 5.759506 TTCCTCGATAAGAGCAACTCTAG 57.240 43.478 0.00 0.00 45.54 2.43
216 217 6.239064 GGAATTCCTCGATAAGAGCAACTCTA 60.239 42.308 17.73 0.00 45.54 2.43
217 218 5.452636 GGAATTCCTCGATAAGAGCAACTCT 60.453 44.000 17.73 0.00 45.54 3.24
218 219 4.747605 GGAATTCCTCGATAAGAGCAACTC 59.252 45.833 17.73 0.00 45.54 3.01
219 220 4.443598 GGGAATTCCTCGATAAGAGCAACT 60.444 45.833 23.63 0.00 45.54 3.16
220 221 3.810386 GGGAATTCCTCGATAAGAGCAAC 59.190 47.826 23.63 0.00 45.54 4.17
221 222 3.711704 AGGGAATTCCTCGATAAGAGCAA 59.288 43.478 23.63 0.00 44.06 3.91
222 223 3.070159 CAGGGAATTCCTCGATAAGAGCA 59.930 47.826 23.63 0.00 46.12 4.26
223 224 3.322254 TCAGGGAATTCCTCGATAAGAGC 59.678 47.826 23.63 3.33 46.12 4.09
224 225 5.621104 CGATCAGGGAATTCCTCGATAAGAG 60.621 48.000 22.76 13.38 46.12 2.85
225 226 4.218635 CGATCAGGGAATTCCTCGATAAGA 59.781 45.833 22.76 12.10 46.12 2.10
226 227 4.218635 TCGATCAGGGAATTCCTCGATAAG 59.781 45.833 24.71 20.08 46.12 1.73
227 228 4.149598 TCGATCAGGGAATTCCTCGATAA 58.850 43.478 24.71 15.17 46.12 1.75
228 229 3.763057 TCGATCAGGGAATTCCTCGATA 58.237 45.455 24.71 10.48 46.12 2.92
229 230 2.598565 TCGATCAGGGAATTCCTCGAT 58.401 47.619 24.71 23.23 46.12 3.59
230 231 2.067365 TCGATCAGGGAATTCCTCGA 57.933 50.000 24.71 24.71 46.12 4.04
231 232 2.036475 ACATCGATCAGGGAATTCCTCG 59.964 50.000 23.63 22.54 46.12 4.63
232 233 3.323403 AGACATCGATCAGGGAATTCCTC 59.677 47.826 23.63 13.78 46.12 3.71
234 235 3.760580 AGACATCGATCAGGGAATTCC 57.239 47.619 16.74 16.74 0.00 3.01
247 248 5.016028 ACTCTCCGAGTTCGAAGACATCG 62.016 52.174 0.00 6.56 40.28 3.84
248 249 2.420722 ACTCTCCGAGTTCGAAGACATC 59.579 50.000 0.00 0.00 40.28 3.06
249 250 2.420722 GACTCTCCGAGTTCGAAGACAT 59.579 50.000 0.00 0.00 43.53 3.06
250 251 1.805345 GACTCTCCGAGTTCGAAGACA 59.195 52.381 0.00 0.00 43.53 3.41
251 252 2.078392 AGACTCTCCGAGTTCGAAGAC 58.922 52.381 0.00 0.00 43.53 3.01
252 253 2.476126 AGACTCTCCGAGTTCGAAGA 57.524 50.000 0.00 0.00 43.53 2.87
253 254 3.064271 CCTTAGACTCTCCGAGTTCGAAG 59.936 52.174 0.00 11.92 43.53 3.79
254 255 3.008330 CCTTAGACTCTCCGAGTTCGAA 58.992 50.000 2.59 0.00 43.53 3.71
255 256 2.630158 CCTTAGACTCTCCGAGTTCGA 58.370 52.381 2.59 0.00 43.53 3.71
256 257 1.671845 CCCTTAGACTCTCCGAGTTCG 59.328 57.143 0.00 0.00 43.53 3.95
257 258 3.002038 TCCCTTAGACTCTCCGAGTTC 57.998 52.381 0.00 0.00 43.53 3.01
258 259 3.453059 TTCCCTTAGACTCTCCGAGTT 57.547 47.619 0.00 0.00 43.53 3.01
259 260 3.453059 TTTCCCTTAGACTCTCCGAGT 57.547 47.619 0.00 0.00 46.42 4.18
260 261 3.510360 TGTTTTCCCTTAGACTCTCCGAG 59.490 47.826 0.00 0.00 35.52 4.63
261 262 3.503365 TGTTTTCCCTTAGACTCTCCGA 58.497 45.455 0.00 0.00 0.00 4.55
262 263 3.510360 TCTGTTTTCCCTTAGACTCTCCG 59.490 47.826 0.00 0.00 0.00 4.63
263 264 5.485209 TTCTGTTTTCCCTTAGACTCTCC 57.515 43.478 0.00 0.00 0.00 3.71
264 265 6.311690 CGAATTCTGTTTTCCCTTAGACTCTC 59.688 42.308 3.52 0.00 0.00 3.20
265 266 6.166982 CGAATTCTGTTTTCCCTTAGACTCT 58.833 40.000 3.52 0.00 0.00 3.24
266 267 5.351740 CCGAATTCTGTTTTCCCTTAGACTC 59.648 44.000 3.52 0.00 0.00 3.36
267 268 5.221864 ACCGAATTCTGTTTTCCCTTAGACT 60.222 40.000 3.52 0.00 0.00 3.24
268 269 5.001874 ACCGAATTCTGTTTTCCCTTAGAC 58.998 41.667 3.52 0.00 0.00 2.59
269 270 5.012768 AGACCGAATTCTGTTTTCCCTTAGA 59.987 40.000 3.88 0.00 0.00 2.10
270 271 5.246307 AGACCGAATTCTGTTTTCCCTTAG 58.754 41.667 3.88 0.00 0.00 2.18
271 272 5.237236 AGACCGAATTCTGTTTTCCCTTA 57.763 39.130 3.88 0.00 0.00 2.69
272 273 4.072839 GAGACCGAATTCTGTTTTCCCTT 58.927 43.478 3.88 0.00 0.00 3.95
273 274 3.559384 GGAGACCGAATTCTGTTTTCCCT 60.559 47.826 16.79 5.84 0.00 4.20
274 275 2.747989 GGAGACCGAATTCTGTTTTCCC 59.252 50.000 16.79 8.28 0.00 3.97
275 276 2.747989 GGGAGACCGAATTCTGTTTTCC 59.252 50.000 18.24 18.24 43.64 3.13
294 295 8.557287 GACAATTCTATGTTTCCCCCTTAAGGG 61.557 44.444 31.05 31.05 44.57 3.95
295 296 6.194967 ACAATTCTATGTTTCCCCCTTAAGG 58.805 40.000 15.14 15.14 0.00 2.69
296 297 6.321435 GGACAATTCTATGTTTCCCCCTTAAG 59.679 42.308 0.00 0.00 32.57 1.85
297 298 6.192044 GGACAATTCTATGTTTCCCCCTTAA 58.808 40.000 0.00 0.00 32.57 1.85
298 299 5.254267 TGGACAATTCTATGTTTCCCCCTTA 59.746 40.000 0.00 0.00 32.57 2.69
299 300 4.045334 TGGACAATTCTATGTTTCCCCCTT 59.955 41.667 0.00 0.00 32.57 3.95
300 301 3.596046 TGGACAATTCTATGTTTCCCCCT 59.404 43.478 0.00 0.00 32.57 4.79
301 302 3.976015 TGGACAATTCTATGTTTCCCCC 58.024 45.455 0.00 0.00 32.57 5.40
302 303 5.016831 AGTTGGACAATTCTATGTTTCCCC 58.983 41.667 0.00 0.00 32.57 4.81
303 304 5.710099 TCAGTTGGACAATTCTATGTTTCCC 59.290 40.000 0.00 0.00 32.57 3.97
304 305 6.817765 TCAGTTGGACAATTCTATGTTTCC 57.182 37.500 0.00 0.00 32.57 3.13
305 306 6.803807 GCTTCAGTTGGACAATTCTATGTTTC 59.196 38.462 0.00 0.00 32.57 2.78
306 307 6.265196 TGCTTCAGTTGGACAATTCTATGTTT 59.735 34.615 0.00 0.00 32.57 2.83
307 308 5.769662 TGCTTCAGTTGGACAATTCTATGTT 59.230 36.000 0.00 0.00 32.57 2.71
308 309 5.182001 GTGCTTCAGTTGGACAATTCTATGT 59.818 40.000 0.00 0.00 35.90 2.29
309 310 5.392380 GGTGCTTCAGTTGGACAATTCTATG 60.392 44.000 0.00 0.00 0.00 2.23
310 311 4.702131 GGTGCTTCAGTTGGACAATTCTAT 59.298 41.667 0.00 0.00 0.00 1.98
311 312 4.072131 GGTGCTTCAGTTGGACAATTCTA 58.928 43.478 0.00 0.00 0.00 2.10
312 313 2.887152 GGTGCTTCAGTTGGACAATTCT 59.113 45.455 0.00 0.00 0.00 2.40
313 314 2.622942 TGGTGCTTCAGTTGGACAATTC 59.377 45.455 0.00 0.00 0.00 2.17
314 315 2.362077 GTGGTGCTTCAGTTGGACAATT 59.638 45.455 0.00 0.00 0.00 2.32
315 316 1.956477 GTGGTGCTTCAGTTGGACAAT 59.044 47.619 0.00 0.00 0.00 2.71
316 317 1.340502 TGTGGTGCTTCAGTTGGACAA 60.341 47.619 0.00 0.00 0.00 3.18
317 318 0.254462 TGTGGTGCTTCAGTTGGACA 59.746 50.000 0.00 0.00 0.00 4.02
318 319 1.537202 GATGTGGTGCTTCAGTTGGAC 59.463 52.381 0.00 0.00 0.00 4.02
319 320 1.421268 AGATGTGGTGCTTCAGTTGGA 59.579 47.619 0.00 0.00 0.00 3.53
320 321 1.538512 CAGATGTGGTGCTTCAGTTGG 59.461 52.381 0.00 0.00 0.00 3.77
321 322 1.538512 CCAGATGTGGTGCTTCAGTTG 59.461 52.381 0.00 0.00 39.30 3.16
322 323 1.421268 TCCAGATGTGGTGCTTCAGTT 59.579 47.619 9.03 0.00 45.28 3.16
323 324 1.059098 TCCAGATGTGGTGCTTCAGT 58.941 50.000 9.03 0.00 45.28 3.41
324 325 1.446907 GTCCAGATGTGGTGCTTCAG 58.553 55.000 9.03 0.00 45.28 3.02
325 326 0.320683 CGTCCAGATGTGGTGCTTCA 60.321 55.000 9.03 0.00 45.28 3.02
326 327 0.037326 TCGTCCAGATGTGGTGCTTC 60.037 55.000 9.03 0.00 45.28 3.86
327 328 0.320771 GTCGTCCAGATGTGGTGCTT 60.321 55.000 9.03 0.00 45.28 3.91
328 329 1.188219 AGTCGTCCAGATGTGGTGCT 61.188 55.000 9.03 0.64 45.28 4.40
329 330 0.320771 AAGTCGTCCAGATGTGGTGC 60.321 55.000 9.03 2.68 45.28 5.01
330 331 1.270305 ACAAGTCGTCCAGATGTGGTG 60.270 52.381 9.03 3.24 45.28 4.17
331 332 1.048601 ACAAGTCGTCCAGATGTGGT 58.951 50.000 9.03 0.00 45.28 4.16
332 333 3.313012 TTACAAGTCGTCCAGATGTGG 57.687 47.619 1.45 1.45 46.63 4.17
333 334 5.666969 TTTTTACAAGTCGTCCAGATGTG 57.333 39.130 0.00 0.00 0.00 3.21
453 454 2.124983 TCGCTCTCCAGCCAATGC 60.125 61.111 0.00 0.00 43.56 3.56
454 455 2.178890 GCTCGCTCTCCAGCCAATG 61.179 63.158 0.00 0.00 43.56 2.82
455 456 2.188994 GCTCGCTCTCCAGCCAAT 59.811 61.111 0.00 0.00 43.56 3.16
456 457 4.441695 CGCTCGCTCTCCAGCCAA 62.442 66.667 0.00 0.00 43.56 4.52
458 459 4.567385 CTCGCTCGCTCTCCAGCC 62.567 72.222 0.00 0.00 43.56 4.85
656 657 6.812998 ACGAAATTTCTGGTATCTATTCCGA 58.187 36.000 15.92 0.00 0.00 4.55
665 666 3.899052 TCCCGACGAAATTTCTGGTAT 57.101 42.857 15.92 0.00 0.00 2.73
902 922 0.179119 AGGCGAAATAACCTCGTCCG 60.179 55.000 0.00 0.00 41.80 4.79
984 1005 4.276678 TCTGCCATCTTCACAGACAAAAAG 59.723 41.667 0.00 0.00 35.58 2.27
1256 1277 3.021553 ATGGACCATGCTGGCCAT 58.978 55.556 5.51 17.23 43.87 4.40
1308 1329 3.007290 TCTGTCTCAACCAGTCTCCAATG 59.993 47.826 0.00 0.00 0.00 2.82
1430 1451 4.944048 CCCTGTTGGTTTCCAAAGTAAAG 58.056 43.478 2.65 0.00 45.73 1.85
1772 1793 4.095483 CACAGCTCTGCTAGGTTATTTTGG 59.905 45.833 0.00 0.00 36.40 3.28
1871 1892 8.836413 CATAACTTTGAAGGACTTTGAGTGTTA 58.164 33.333 0.00 0.00 0.00 2.41
2055 2084 2.866750 TGCCATGCGCAGTAAACG 59.133 55.556 18.32 0.00 44.64 3.60
2268 2297 9.525409 AATAGAAAAATCACTGCAATTATGAGC 57.475 29.630 0.00 0.00 0.00 4.26
2545 2580 8.950007 TCCCAGATTTATCAAACCTTTAAAGT 57.050 30.769 14.03 0.00 0.00 2.66
2815 2850 2.639839 ACCAACAACCTCTGCTGATACT 59.360 45.455 0.00 0.00 0.00 2.12
2929 2964 1.410517 ACTGGTGAGATAGGTGCATCG 59.589 52.381 0.00 0.00 0.00 3.84
3014 3049 4.072131 TCAGGTATGTTTTTGAGTGCCTC 58.928 43.478 0.00 0.00 0.00 4.70
3078 3113 0.880278 AAATCGGCGATCATCACGGG 60.880 55.000 24.20 0.00 0.00 5.28
3250 3310 7.976734 CACTAAGTGAGACTTAACTAATCAGGG 59.023 40.741 0.00 0.00 39.89 4.45
3263 3329 3.709653 TGGTTCCAACACTAAGTGAGACT 59.290 43.478 0.00 0.00 36.96 3.24
3264 3330 4.067972 TGGTTCCAACACTAAGTGAGAC 57.932 45.455 0.00 0.00 36.96 3.36
3265 3331 4.102524 ACATGGTTCCAACACTAAGTGAGA 59.897 41.667 0.00 0.00 36.96 3.27
3266 3332 4.214119 CACATGGTTCCAACACTAAGTGAG 59.786 45.833 0.00 0.00 36.96 3.51
3267 3333 4.133820 CACATGGTTCCAACACTAAGTGA 58.866 43.478 0.00 0.00 36.96 3.41
3268 3334 4.133820 TCACATGGTTCCAACACTAAGTG 58.866 43.478 0.00 0.00 39.75 3.16
3269 3335 4.431416 TCACATGGTTCCAACACTAAGT 57.569 40.909 0.00 0.00 0.00 2.24
3270 3336 4.379813 GCATCACATGGTTCCAACACTAAG 60.380 45.833 0.00 0.00 0.00 2.18
3271 3337 3.505680 GCATCACATGGTTCCAACACTAA 59.494 43.478 0.00 0.00 0.00 2.24
3452 3605 9.844790 CAGAAACAAGTAAATGCATCTGATTTA 57.155 29.630 0.00 0.00 38.00 1.40
3511 3667 6.862711 ACTAAAGTTCAACAAAGTAGGAGC 57.137 37.500 0.00 0.00 0.00 4.70
3540 3696 0.456995 GTCCGAGTCTTGGAGAAGCG 60.457 60.000 9.31 0.00 35.82 4.68
3555 3711 0.458025 GTGTTAAGCCCGAGAGTCCG 60.458 60.000 0.00 0.00 0.00 4.79
3621 3777 6.611613 AGACCATCATTCTAGTGTTTCAGA 57.388 37.500 0.00 0.00 0.00 3.27
3637 3793 0.381089 CGAGTCCACGGTAGACCATC 59.619 60.000 3.03 0.00 34.67 3.51
3672 3828 2.740452 GGATATTCGTCGGTGAACCTC 58.260 52.381 0.00 0.00 0.00 3.85
3686 3842 1.246056 TAGCTACGCCCGCGGATATT 61.246 55.000 30.73 10.40 44.69 1.28
3715 3871 0.836606 TCACCAGACTGACTTTGCCA 59.163 50.000 3.32 0.00 0.00 4.92
3779 3935 1.172180 TTCTTTGCCAAGTGGAGCGG 61.172 55.000 0.18 0.00 37.39 5.52
3806 3962 6.238814 CCTCGTCTAATCTAAGAAGGGAAGAC 60.239 46.154 0.00 0.00 27.88 3.01
3827 3983 4.032558 GGAAATACTAAGCACGTTTCCTCG 59.967 45.833 7.69 0.00 42.71 4.63
3843 3999 5.773239 TCGAACGACTTTCATGGAAATAC 57.227 39.130 0.00 0.00 33.24 1.89
3845 4001 4.935205 TCATCGAACGACTTTCATGGAAAT 59.065 37.500 0.00 0.00 33.24 2.17
3878 4046 2.778299 TGTCCATTTCCCTTTCGACAG 58.222 47.619 0.00 0.00 0.00 3.51
3890 4058 1.843368 CTGCCTGTCCATGTCCATTT 58.157 50.000 0.00 0.00 0.00 2.32
3901 4069 3.537206 AAGGTGACGGCTGCCTGTC 62.537 63.158 26.01 26.01 35.67 3.51
3903 4071 2.281761 AAAGGTGACGGCTGCCTG 60.282 61.111 17.92 12.68 32.16 4.85
3904 4072 2.281761 CAAAGGTGACGGCTGCCT 60.282 61.111 17.92 3.54 0.00 4.75
3905 4073 3.365265 CCAAAGGTGACGGCTGCC 61.365 66.667 9.11 9.11 0.00 4.85
3907 4075 3.365265 GGCCAAAGGTGACGGCTG 61.365 66.667 0.00 0.00 45.50 4.85
3908 4076 2.640581 AAAGGCCAAAGGTGACGGCT 62.641 55.000 5.01 0.00 45.50 5.52
3910 4078 1.611519 TTAAAGGCCAAAGGTGACGG 58.388 50.000 5.01 0.00 0.00 4.79
3911 4079 3.574614 CAATTAAAGGCCAAAGGTGACG 58.425 45.455 5.01 0.00 0.00 4.35
3912 4080 3.306710 CCCAATTAAAGGCCAAAGGTGAC 60.307 47.826 5.01 0.00 0.00 3.67
3913 4081 2.903135 CCCAATTAAAGGCCAAAGGTGA 59.097 45.455 5.01 0.00 0.00 4.02
3914 4082 2.637382 ACCCAATTAAAGGCCAAAGGTG 59.363 45.455 5.01 0.00 0.00 4.00
3915 4083 2.903784 GACCCAATTAAAGGCCAAAGGT 59.096 45.455 5.01 0.00 0.00 3.50
3916 4084 2.903135 TGACCCAATTAAAGGCCAAAGG 59.097 45.455 5.01 0.00 0.00 3.11
3974 4697 0.389426 ACTAACGGCGCACCACTAAG 60.389 55.000 10.83 0.00 34.57 2.18
4029 6495 6.457257 GCTTATGGGTTGCAATAAAATTGCTG 60.457 38.462 21.43 5.86 45.13 4.41
4063 6529 0.598065 AACGACTTCTTGGCCATTGC 59.402 50.000 6.09 0.00 0.00 3.56
4066 6532 3.686016 ACATTAACGACTTCTTGGCCAT 58.314 40.909 6.09 0.00 0.00 4.40
4077 6543 5.867716 ACATCTTGTGGTCTACATTAACGAC 59.132 40.000 0.00 0.00 39.48 4.34
4092 6558 0.792640 GTGACTGCCGACATCTTGTG 59.207 55.000 0.00 0.00 0.00 3.33
4104 6570 2.264109 TCTTTCTCGATCGTGACTGC 57.736 50.000 18.69 0.00 0.00 4.40
4114 6580 5.763698 TCTTTAGGATAGCGATCTTTCTCGA 59.236 40.000 6.77 0.00 41.12 4.04
4116 6582 6.977213 ACTCTTTAGGATAGCGATCTTTCTC 58.023 40.000 6.77 0.00 32.15 2.87
4117 6583 6.969993 ACTCTTTAGGATAGCGATCTTTCT 57.030 37.500 6.77 0.00 32.15 2.52
4137 6603 1.653151 GCCATCCTCGTTACCAACTC 58.347 55.000 0.00 0.00 0.00 3.01
4146 6613 2.088104 TATCTTCTGGCCATCCTCGT 57.912 50.000 5.51 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.