Multiple sequence alignment - TraesCS1A01G374500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G374500 chr1A 100.000 2294 0 0 1 2294 549694442 549696735 0.000000e+00 4237
1 TraesCS1A01G374500 chr1A 96.918 292 9 0 1003 1294 549670659 549670950 7.360000e-135 490
2 TraesCS1A01G374500 chr1D 86.822 1032 74 20 641 1638 457043791 457044794 0.000000e+00 1096
3 TraesCS1A01G374500 chr1D 91.576 736 37 4 1010 1726 457033375 457034104 0.000000e+00 992
4 TraesCS1A01G374500 chr1D 95.439 285 13 0 1010 1294 456251741 456252025 2.690000e-124 455
5 TraesCS1A01G374500 chr1D 94.386 285 16 0 1010 1294 456203146 456203430 2.710000e-119 438
6 TraesCS1A01G374500 chr1D 90.400 125 5 3 96 216 457043674 457043795 8.480000e-35 158
7 TraesCS1A01G374500 chr1B 89.545 880 46 16 795 1638 626648909 626649778 0.000000e+00 1074
8 TraesCS1A01G374500 chr1B 93.684 285 17 1 1010 1294 626610313 626610596 2.110000e-115 425
9 TraesCS1A01G374500 chr1B 94.215 121 7 0 96 216 626648683 626648803 3.890000e-43 185
10 TraesCS1A01G374500 chr5B 99.306 432 3 0 211 642 514080411 514079980 0.000000e+00 782
11 TraesCS1A01G374500 chr6D 96.495 428 15 0 215 642 27103067 27103494 0.000000e+00 708
12 TraesCS1A01G374500 chr6D 87.698 504 55 6 1769 2266 330191421 330191923 4.250000e-162 580
13 TraesCS1A01G374500 chr3D 96.101 436 14 2 210 645 565981396 565980964 0.000000e+00 708
14 TraesCS1A01G374500 chr3D 86.528 527 60 10 1775 2294 531793148 531792626 9.200000e-159 569
15 TraesCS1A01G374500 chr3B 95.195 437 21 0 210 646 772378381 772378817 0.000000e+00 691
16 TraesCS1A01G374500 chr3B 81.404 285 39 9 369 641 805818412 805818130 1.070000e-53 220
17 TraesCS1A01G374500 chr4D 88.805 527 48 9 1775 2294 27512340 27511818 8.940000e-179 636
18 TraesCS1A01G374500 chr2B 87.218 532 61 7 1769 2294 232586248 232586778 1.170000e-167 599
19 TraesCS1A01G374500 chr2B 82.168 286 37 11 369 642 456622173 456621890 1.370000e-57 233
20 TraesCS1A01G374500 chr2D 87.146 529 58 7 1769 2292 326462042 326462565 1.960000e-165 592
21 TraesCS1A01G374500 chr2A 91.204 432 35 1 211 642 472448809 472449237 3.280000e-163 584
22 TraesCS1A01G374500 chr2A 86.278 532 67 5 1769 2294 431038048 431038579 7.110000e-160 573
23 TraesCS1A01G374500 chr4B 86.542 535 59 11 1769 2294 92589879 92590409 5.500000e-161 577
24 TraesCS1A01G374500 chr7D 86.168 535 59 10 1769 2294 594909290 594909818 4.280000e-157 564
25 TraesCS1A01G374500 chr5D 85.929 533 67 8 1769 2294 440302131 440301600 1.540000e-156 562
26 TraesCS1A01G374500 chr4A 100.000 208 0 0 215 422 420023493 420023286 3.580000e-103 385
27 TraesCS1A01G374500 chr7A 81.315 289 40 10 369 645 63316556 63316270 2.970000e-54 222
28 TraesCS1A01G374500 chr6B 84.158 202 30 2 442 642 118895665 118895465 6.470000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G374500 chr1A 549694442 549696735 2293 False 4237.0 4237 100.000 1 2294 1 chr1A.!!$F2 2293
1 TraesCS1A01G374500 chr1D 457033375 457034104 729 False 992.0 992 91.576 1010 1726 1 chr1D.!!$F3 716
2 TraesCS1A01G374500 chr1D 457043674 457044794 1120 False 627.0 1096 88.611 96 1638 2 chr1D.!!$F4 1542
3 TraesCS1A01G374500 chr1B 626648683 626649778 1095 False 629.5 1074 91.880 96 1638 2 chr1B.!!$F2 1542
4 TraesCS1A01G374500 chr6D 330191421 330191923 502 False 580.0 580 87.698 1769 2266 1 chr6D.!!$F2 497
5 TraesCS1A01G374500 chr3D 531792626 531793148 522 True 569.0 569 86.528 1775 2294 1 chr3D.!!$R1 519
6 TraesCS1A01G374500 chr4D 27511818 27512340 522 True 636.0 636 88.805 1775 2294 1 chr4D.!!$R1 519
7 TraesCS1A01G374500 chr2B 232586248 232586778 530 False 599.0 599 87.218 1769 2294 1 chr2B.!!$F1 525
8 TraesCS1A01G374500 chr2D 326462042 326462565 523 False 592.0 592 87.146 1769 2292 1 chr2D.!!$F1 523
9 TraesCS1A01G374500 chr2A 431038048 431038579 531 False 573.0 573 86.278 1769 2294 1 chr2A.!!$F1 525
10 TraesCS1A01G374500 chr4B 92589879 92590409 530 False 577.0 577 86.542 1769 2294 1 chr4B.!!$F1 525
11 TraesCS1A01G374500 chr7D 594909290 594909818 528 False 564.0 564 86.168 1769 2294 1 chr7D.!!$F1 525
12 TraesCS1A01G374500 chr5D 440301600 440302131 531 True 562.0 562 85.929 1769 2294 1 chr5D.!!$R1 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 472 0.037326 CGGTGGCAGCTCTCTGTAAA 60.037 55.0 15.48 0.0 42.29 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1814 0.250295 TTCTTCTGTTCTGGCCCGTG 60.25 55.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.020914 GATGGAACTATTCAACCAACTCATC 57.979 40.000 0.00 0.00 36.00 2.92
25 26 5.253330 TGGAACTATTCAACCAACTCATCC 58.747 41.667 0.00 0.00 0.00 3.51
26 27 5.222027 TGGAACTATTCAACCAACTCATCCA 60.222 40.000 0.00 0.00 0.00 3.41
27 28 5.888161 GGAACTATTCAACCAACTCATCCAT 59.112 40.000 0.00 0.00 0.00 3.41
28 29 6.378280 GGAACTATTCAACCAACTCATCCATT 59.622 38.462 0.00 0.00 0.00 3.16
29 30 7.556275 GGAACTATTCAACCAACTCATCCATTA 59.444 37.037 0.00 0.00 0.00 1.90
30 31 8.877864 AACTATTCAACCAACTCATCCATTAA 57.122 30.769 0.00 0.00 0.00 1.40
31 32 8.877864 ACTATTCAACCAACTCATCCATTAAA 57.122 30.769 0.00 0.00 0.00 1.52
32 33 9.308000 ACTATTCAACCAACTCATCCATTAAAA 57.692 29.630 0.00 0.00 0.00 1.52
33 34 9.793252 CTATTCAACCAACTCATCCATTAAAAG 57.207 33.333 0.00 0.00 0.00 2.27
34 35 7.595819 TTCAACCAACTCATCCATTAAAAGT 57.404 32.000 0.00 0.00 0.00 2.66
35 36 8.698973 TTCAACCAACTCATCCATTAAAAGTA 57.301 30.769 0.00 0.00 0.00 2.24
36 37 8.335532 TCAACCAACTCATCCATTAAAAGTAG 57.664 34.615 0.00 0.00 0.00 2.57
37 38 8.160765 TCAACCAACTCATCCATTAAAAGTAGA 58.839 33.333 0.00 0.00 0.00 2.59
38 39 8.454106 CAACCAACTCATCCATTAAAAGTAGAG 58.546 37.037 0.00 0.00 0.00 2.43
39 40 7.918076 ACCAACTCATCCATTAAAAGTAGAGA 58.082 34.615 0.00 0.00 0.00 3.10
40 41 8.552296 ACCAACTCATCCATTAAAAGTAGAGAT 58.448 33.333 0.00 0.00 0.00 2.75
41 42 8.834465 CCAACTCATCCATTAAAAGTAGAGATG 58.166 37.037 0.00 0.00 0.00 2.90
42 43 9.605275 CAACTCATCCATTAAAAGTAGAGATGA 57.395 33.333 0.00 0.00 37.04 2.92
44 45 9.775854 ACTCATCCATTAAAAGTAGAGATGATG 57.224 33.333 0.00 0.00 38.28 3.07
45 46 9.993454 CTCATCCATTAAAAGTAGAGATGATGA 57.007 33.333 0.00 0.00 38.28 2.92
46 47 9.770097 TCATCCATTAAAAGTAGAGATGATGAC 57.230 33.333 0.00 0.00 35.09 3.06
47 48 8.997323 CATCCATTAAAAGTAGAGATGATGACC 58.003 37.037 0.00 0.00 33.16 4.02
48 49 7.509546 TCCATTAAAAGTAGAGATGATGACCC 58.490 38.462 0.00 0.00 0.00 4.46
49 50 7.127186 TCCATTAAAAGTAGAGATGATGACCCA 59.873 37.037 0.00 0.00 0.00 4.51
50 51 7.941238 CCATTAAAAGTAGAGATGATGACCCAT 59.059 37.037 0.00 0.00 0.00 4.00
51 52 8.781196 CATTAAAAGTAGAGATGATGACCCATG 58.219 37.037 0.00 0.00 0.00 3.66
52 53 6.566079 AAAAGTAGAGATGATGACCCATGA 57.434 37.500 0.00 0.00 0.00 3.07
53 54 6.760440 AAAGTAGAGATGATGACCCATGAT 57.240 37.500 0.00 0.00 0.00 2.45
54 55 5.999205 AGTAGAGATGATGACCCATGATC 57.001 43.478 0.00 0.00 35.32 2.92
55 56 5.400870 AGTAGAGATGATGACCCATGATCA 58.599 41.667 0.00 0.00 37.04 2.92
56 57 4.620589 AGAGATGATGACCCATGATCAC 57.379 45.455 0.00 3.32 37.04 3.06
57 58 3.006644 AGAGATGATGACCCATGATCACG 59.993 47.826 0.00 0.00 37.04 4.35
58 59 1.802960 GATGATGACCCATGATCACGC 59.197 52.381 0.00 0.00 35.22 5.34
59 60 0.179048 TGATGACCCATGATCACGCC 60.179 55.000 0.00 0.00 0.00 5.68
60 61 0.179048 GATGACCCATGATCACGCCA 60.179 55.000 0.00 0.00 0.00 5.69
61 62 0.179037 ATGACCCATGATCACGCCAG 60.179 55.000 0.00 0.00 0.00 4.85
62 63 2.124570 ACCCATGATCACGCCAGC 60.125 61.111 0.00 0.00 0.00 4.85
63 64 2.903855 CCCATGATCACGCCAGCC 60.904 66.667 0.00 0.00 0.00 4.85
64 65 2.124612 CCATGATCACGCCAGCCA 60.125 61.111 0.00 0.00 0.00 4.75
65 66 1.527611 CCATGATCACGCCAGCCAT 60.528 57.895 0.00 0.00 0.00 4.40
66 67 1.652563 CATGATCACGCCAGCCATG 59.347 57.895 0.00 0.00 0.00 3.66
67 68 2.191513 ATGATCACGCCAGCCATGC 61.192 57.895 0.00 0.00 0.00 4.06
68 69 2.515523 GATCACGCCAGCCATGCT 60.516 61.111 0.00 0.00 40.77 3.79
78 79 2.536411 AGCCATGCTGCCTCTATGA 58.464 52.632 0.00 0.00 37.57 2.15
79 80 0.108207 AGCCATGCTGCCTCTATGAC 59.892 55.000 0.00 0.00 37.57 3.06
80 81 0.888285 GCCATGCTGCCTCTATGACC 60.888 60.000 0.00 0.00 0.00 4.02
81 82 0.250640 CCATGCTGCCTCTATGACCC 60.251 60.000 0.00 0.00 0.00 4.46
82 83 0.763652 CATGCTGCCTCTATGACCCT 59.236 55.000 0.00 0.00 0.00 4.34
83 84 1.055040 ATGCTGCCTCTATGACCCTC 58.945 55.000 0.00 0.00 0.00 4.30
84 85 1.050988 TGCTGCCTCTATGACCCTCC 61.051 60.000 0.00 0.00 0.00 4.30
85 86 1.050988 GCTGCCTCTATGACCCTCCA 61.051 60.000 0.00 0.00 0.00 3.86
86 87 1.727062 CTGCCTCTATGACCCTCCAT 58.273 55.000 0.00 0.00 0.00 3.41
87 88 1.347050 CTGCCTCTATGACCCTCCATG 59.653 57.143 0.00 0.00 0.00 3.66
88 89 1.062198 TGCCTCTATGACCCTCCATGA 60.062 52.381 0.00 0.00 0.00 3.07
89 90 1.346068 GCCTCTATGACCCTCCATGAC 59.654 57.143 0.00 0.00 0.00 3.06
90 91 2.969628 CCTCTATGACCCTCCATGACT 58.030 52.381 0.00 0.00 0.00 3.41
91 92 2.896685 CCTCTATGACCCTCCATGACTC 59.103 54.545 0.00 0.00 0.00 3.36
92 93 3.570540 CTCTATGACCCTCCATGACTCA 58.429 50.000 0.00 0.00 0.00 3.41
93 94 3.300388 TCTATGACCCTCCATGACTCAC 58.700 50.000 0.00 0.00 0.00 3.51
94 95 1.207791 ATGACCCTCCATGACTCACC 58.792 55.000 0.00 0.00 0.00 4.02
104 105 3.888930 TCCATGACTCACCAAAGTTTTCC 59.111 43.478 0.00 0.00 0.00 3.13
106 107 4.261741 CCATGACTCACCAAAGTTTTCCTG 60.262 45.833 0.00 0.00 0.00 3.86
121 122 2.900337 CTGGTTAATCGCCGCCCC 60.900 66.667 0.00 0.00 0.00 5.80
129 130 1.455383 AATCGCCGCCCCAAATGATC 61.455 55.000 0.00 0.00 0.00 2.92
211 216 6.532988 AGACTTTCTCTTACTATCACCCAC 57.467 41.667 0.00 0.00 0.00 4.61
212 217 6.257586 AGACTTTCTCTTACTATCACCCACT 58.742 40.000 0.00 0.00 0.00 4.00
213 218 6.153680 AGACTTTCTCTTACTATCACCCACTG 59.846 42.308 0.00 0.00 0.00 3.66
214 219 6.017192 ACTTTCTCTTACTATCACCCACTGA 58.983 40.000 0.00 0.00 0.00 3.41
215 220 6.153680 ACTTTCTCTTACTATCACCCACTGAG 59.846 42.308 0.00 0.00 30.20 3.35
216 221 4.537751 TCTCTTACTATCACCCACTGAGG 58.462 47.826 0.00 0.00 30.20 3.86
225 230 2.046892 CCACTGAGGGCCTGTTCG 60.047 66.667 12.95 0.00 0.00 3.95
226 231 2.046892 CACTGAGGGCCTGTTCGG 60.047 66.667 12.95 4.30 0.00 4.30
235 240 2.359975 CCTGTTCGGCAACTCCCC 60.360 66.667 0.00 0.00 33.17 4.81
236 241 2.429930 CTGTTCGGCAACTCCCCA 59.570 61.111 0.00 0.00 33.17 4.96
237 242 1.672356 CTGTTCGGCAACTCCCCAG 60.672 63.158 0.00 0.00 33.17 4.45
238 243 3.056328 GTTCGGCAACTCCCCAGC 61.056 66.667 0.00 0.00 0.00 4.85
239 244 4.697756 TTCGGCAACTCCCCAGCG 62.698 66.667 0.00 0.00 0.00 5.18
244 249 3.058160 CAACTCCCCAGCGCCAAG 61.058 66.667 2.29 0.00 0.00 3.61
245 250 3.249189 AACTCCCCAGCGCCAAGA 61.249 61.111 2.29 0.00 0.00 3.02
246 251 2.829384 AACTCCCCAGCGCCAAGAA 61.829 57.895 2.29 0.00 0.00 2.52
247 252 2.034066 CTCCCCAGCGCCAAGAAA 59.966 61.111 2.29 0.00 0.00 2.52
248 253 1.379044 CTCCCCAGCGCCAAGAAAT 60.379 57.895 2.29 0.00 0.00 2.17
249 254 1.378514 TCCCCAGCGCCAAGAAATC 60.379 57.895 2.29 0.00 0.00 2.17
250 255 2.418083 CCCCAGCGCCAAGAAATCC 61.418 63.158 2.29 0.00 0.00 3.01
251 256 1.379044 CCCAGCGCCAAGAAATCCT 60.379 57.895 2.29 0.00 0.00 3.24
252 257 0.967380 CCCAGCGCCAAGAAATCCTT 60.967 55.000 2.29 0.00 34.91 3.36
253 258 1.681780 CCCAGCGCCAAGAAATCCTTA 60.682 52.381 2.29 0.00 32.86 2.69
254 259 2.091541 CCAGCGCCAAGAAATCCTTAA 58.908 47.619 2.29 0.00 32.86 1.85
255 260 2.491693 CCAGCGCCAAGAAATCCTTAAA 59.508 45.455 2.29 0.00 32.86 1.52
256 261 3.131046 CCAGCGCCAAGAAATCCTTAAAT 59.869 43.478 2.29 0.00 32.86 1.40
257 262 4.354587 CAGCGCCAAGAAATCCTTAAATC 58.645 43.478 2.29 0.00 32.86 2.17
258 263 4.096984 CAGCGCCAAGAAATCCTTAAATCT 59.903 41.667 2.29 0.00 32.86 2.40
259 264 4.096984 AGCGCCAAGAAATCCTTAAATCTG 59.903 41.667 2.29 0.00 32.86 2.90
260 265 4.734695 GCGCCAAGAAATCCTTAAATCTGG 60.735 45.833 0.00 0.00 32.86 3.86
261 266 4.686972 GCCAAGAAATCCTTAAATCTGGC 58.313 43.478 0.00 0.00 32.86 4.85
262 267 4.403752 GCCAAGAAATCCTTAAATCTGGCT 59.596 41.667 2.08 0.00 35.30 4.75
263 268 5.105187 GCCAAGAAATCCTTAAATCTGGCTT 60.105 40.000 2.08 0.00 35.30 4.35
264 269 6.567959 CCAAGAAATCCTTAAATCTGGCTTC 58.432 40.000 0.00 0.00 32.86 3.86
265 270 6.406288 CCAAGAAATCCTTAAATCTGGCTTCC 60.406 42.308 0.00 0.00 32.86 3.46
266 271 5.204292 AGAAATCCTTAAATCTGGCTTCCC 58.796 41.667 0.00 0.00 0.00 3.97
267 272 2.710096 TCCTTAAATCTGGCTTCCCG 57.290 50.000 0.00 0.00 0.00 5.14
268 273 2.193127 TCCTTAAATCTGGCTTCCCGA 58.807 47.619 0.00 0.00 0.00 5.14
269 274 2.777692 TCCTTAAATCTGGCTTCCCGAT 59.222 45.455 0.00 0.00 0.00 4.18
270 275 3.142174 CCTTAAATCTGGCTTCCCGATC 58.858 50.000 0.00 0.00 0.00 3.69
271 276 3.181450 CCTTAAATCTGGCTTCCCGATCT 60.181 47.826 0.00 0.00 0.00 2.75
272 277 2.338577 AAATCTGGCTTCCCGATCTG 57.661 50.000 0.00 0.00 0.00 2.90
273 278 0.471617 AATCTGGCTTCCCGATCTGG 59.528 55.000 0.00 0.00 37.55 3.86
274 279 2.049627 ATCTGGCTTCCCGATCTGGC 62.050 60.000 0.00 0.00 35.87 4.85
275 280 2.688666 TGGCTTCCCGATCTGGCT 60.689 61.111 0.00 0.00 35.87 4.75
276 281 2.262774 CTGGCTTCCCGATCTGGCTT 62.263 60.000 0.00 0.00 35.87 4.35
277 282 1.524849 GGCTTCCCGATCTGGCTTC 60.525 63.158 0.00 0.00 35.87 3.86
278 283 1.524849 GCTTCCCGATCTGGCTTCC 60.525 63.158 0.00 0.00 35.87 3.46
279 284 1.907739 CTTCCCGATCTGGCTTCCA 59.092 57.895 0.00 0.00 35.87 3.53
287 292 4.315588 CTGGCTTCCAGCTTCCAG 57.684 61.111 0.00 0.00 45.13 3.86
288 293 1.681666 CTGGCTTCCAGCTTCCAGA 59.318 57.895 9.05 0.00 45.13 3.86
289 294 0.676151 CTGGCTTCCAGCTTCCAGAC 60.676 60.000 9.05 0.00 45.13 3.51
290 295 1.743252 GGCTTCCAGCTTCCAGACG 60.743 63.158 0.00 0.00 41.99 4.18
291 296 1.293498 GCTTCCAGCTTCCAGACGA 59.707 57.895 0.00 0.00 38.45 4.20
292 297 0.320771 GCTTCCAGCTTCCAGACGAA 60.321 55.000 0.00 0.00 38.45 3.85
293 298 1.878102 GCTTCCAGCTTCCAGACGAAA 60.878 52.381 0.00 0.00 38.45 3.46
294 299 2.494059 CTTCCAGCTTCCAGACGAAAA 58.506 47.619 0.00 0.00 0.00 2.29
295 300 2.859165 TCCAGCTTCCAGACGAAAAT 57.141 45.000 0.00 0.00 0.00 1.82
296 301 3.140325 TCCAGCTTCCAGACGAAAATT 57.860 42.857 0.00 0.00 0.00 1.82
297 302 4.280436 TCCAGCTTCCAGACGAAAATTA 57.720 40.909 0.00 0.00 0.00 1.40
298 303 4.647611 TCCAGCTTCCAGACGAAAATTAA 58.352 39.130 0.00 0.00 0.00 1.40
299 304 4.695455 TCCAGCTTCCAGACGAAAATTAAG 59.305 41.667 0.00 0.00 0.00 1.85
300 305 4.142600 CCAGCTTCCAGACGAAAATTAAGG 60.143 45.833 0.00 0.00 0.00 2.69
301 306 4.695455 CAGCTTCCAGACGAAAATTAAGGA 59.305 41.667 0.00 0.00 0.00 3.36
302 307 5.355350 CAGCTTCCAGACGAAAATTAAGGAT 59.645 40.000 0.00 0.00 0.00 3.24
303 308 5.586643 AGCTTCCAGACGAAAATTAAGGATC 59.413 40.000 0.00 0.00 0.00 3.36
304 309 5.354234 GCTTCCAGACGAAAATTAAGGATCA 59.646 40.000 0.00 0.00 0.00 2.92
305 310 6.457528 GCTTCCAGACGAAAATTAAGGATCAG 60.458 42.308 0.00 0.00 0.00 2.90
306 311 5.428253 TCCAGACGAAAATTAAGGATCAGG 58.572 41.667 0.00 0.00 0.00 3.86
307 312 5.188948 TCCAGACGAAAATTAAGGATCAGGA 59.811 40.000 0.00 0.00 0.00 3.86
308 313 5.880332 CCAGACGAAAATTAAGGATCAGGAA 59.120 40.000 0.00 0.00 0.00 3.36
309 314 6.374333 CCAGACGAAAATTAAGGATCAGGAAA 59.626 38.462 0.00 0.00 0.00 3.13
310 315 7.094377 CCAGACGAAAATTAAGGATCAGGAAAA 60.094 37.037 0.00 0.00 0.00 2.29
311 316 7.750903 CAGACGAAAATTAAGGATCAGGAAAAC 59.249 37.037 0.00 0.00 0.00 2.43
312 317 6.920817 ACGAAAATTAAGGATCAGGAAAACC 58.079 36.000 0.00 0.00 0.00 3.27
313 318 6.027749 CGAAAATTAAGGATCAGGAAAACCG 58.972 40.000 0.00 0.00 0.00 4.44
314 319 6.349033 CGAAAATTAAGGATCAGGAAAACCGT 60.349 38.462 0.00 0.00 0.00 4.83
315 320 6.911250 AAATTAAGGATCAGGAAAACCGTT 57.089 33.333 0.00 0.00 0.00 4.44
316 321 6.510879 AATTAAGGATCAGGAAAACCGTTC 57.489 37.500 0.00 0.00 0.00 3.95
317 322 2.094762 AGGATCAGGAAAACCGTTCG 57.905 50.000 0.00 0.00 0.00 3.95
318 323 1.084289 GGATCAGGAAAACCGTTCGG 58.916 55.000 9.81 9.81 0.00 4.30
319 324 0.446616 GATCAGGAAAACCGTTCGGC 59.553 55.000 11.32 0.00 0.00 5.54
320 325 0.250553 ATCAGGAAAACCGTTCGGCA 60.251 50.000 11.32 0.00 0.00 5.69
321 326 1.161563 TCAGGAAAACCGTTCGGCAC 61.162 55.000 11.32 0.86 0.00 5.01
322 327 1.147600 AGGAAAACCGTTCGGCACT 59.852 52.632 11.32 0.25 0.00 4.40
323 328 0.393820 AGGAAAACCGTTCGGCACTA 59.606 50.000 11.32 0.00 0.00 2.74
324 329 0.794473 GGAAAACCGTTCGGCACTAG 59.206 55.000 11.32 0.00 0.00 2.57
325 330 1.606224 GGAAAACCGTTCGGCACTAGA 60.606 52.381 11.32 0.00 0.00 2.43
326 331 2.137523 GAAAACCGTTCGGCACTAGAA 58.862 47.619 11.32 0.00 0.00 2.10
327 332 1.505425 AAACCGTTCGGCACTAGAAC 58.495 50.000 11.32 0.00 43.16 3.01
328 333 0.677842 AACCGTTCGGCACTAGAACT 59.322 50.000 11.32 0.00 44.08 3.01
329 334 0.243095 ACCGTTCGGCACTAGAACTC 59.757 55.000 11.32 0.00 44.08 3.01
330 335 0.458025 CCGTTCGGCACTAGAACTCC 60.458 60.000 0.00 0.00 44.08 3.85
331 336 0.458025 CGTTCGGCACTAGAACTCCC 60.458 60.000 0.00 0.00 44.08 4.30
332 337 0.108281 GTTCGGCACTAGAACTCCCC 60.108 60.000 0.00 0.00 43.24 4.81
333 338 1.601419 TTCGGCACTAGAACTCCCCG 61.601 60.000 0.00 0.00 37.21 5.73
334 339 2.050350 CGGCACTAGAACTCCCCGA 61.050 63.158 0.00 0.00 38.04 5.14
335 340 1.392710 CGGCACTAGAACTCCCCGAT 61.393 60.000 0.00 0.00 38.04 4.18
336 341 0.389757 GGCACTAGAACTCCCCGATC 59.610 60.000 0.00 0.00 0.00 3.69
337 342 0.389757 GCACTAGAACTCCCCGATCC 59.610 60.000 0.00 0.00 0.00 3.36
338 343 1.776662 CACTAGAACTCCCCGATCCA 58.223 55.000 0.00 0.00 0.00 3.41
339 344 1.683917 CACTAGAACTCCCCGATCCAG 59.316 57.143 0.00 0.00 0.00 3.86
340 345 1.288335 ACTAGAACTCCCCGATCCAGT 59.712 52.381 0.00 0.00 0.00 4.00
341 346 1.957877 CTAGAACTCCCCGATCCAGTC 59.042 57.143 0.00 0.00 0.00 3.51
349 354 2.485582 CGATCCAGTCGCTCGTGT 59.514 61.111 0.00 0.00 44.33 4.49
350 355 1.154016 CGATCCAGTCGCTCGTGTT 60.154 57.895 0.00 0.00 44.33 3.32
351 356 1.406219 CGATCCAGTCGCTCGTGTTG 61.406 60.000 0.00 0.00 44.33 3.33
352 357 1.078759 GATCCAGTCGCTCGTGTTGG 61.079 60.000 0.00 0.00 0.00 3.77
353 358 2.507110 ATCCAGTCGCTCGTGTTGGG 62.507 60.000 8.60 0.00 0.00 4.12
354 359 3.414700 CAGTCGCTCGTGTTGGGC 61.415 66.667 0.00 0.00 0.00 5.36
355 360 3.616721 AGTCGCTCGTGTTGGGCT 61.617 61.111 0.00 0.00 0.00 5.19
356 361 2.665185 GTCGCTCGTGTTGGGCTT 60.665 61.111 0.00 0.00 0.00 4.35
357 362 2.357034 TCGCTCGTGTTGGGCTTC 60.357 61.111 0.00 0.00 0.00 3.86
358 363 2.357517 CGCTCGTGTTGGGCTTCT 60.358 61.111 0.00 0.00 0.00 2.85
359 364 1.080093 CGCTCGTGTTGGGCTTCTA 60.080 57.895 0.00 0.00 0.00 2.10
360 365 1.078759 CGCTCGTGTTGGGCTTCTAG 61.079 60.000 0.00 0.00 0.00 2.43
361 366 1.362406 GCTCGTGTTGGGCTTCTAGC 61.362 60.000 0.00 0.00 41.46 3.42
362 367 1.078759 CTCGTGTTGGGCTTCTAGCG 61.079 60.000 0.00 0.00 43.62 4.26
363 368 2.100631 CGTGTTGGGCTTCTAGCGG 61.101 63.158 0.00 0.00 43.62 5.52
364 369 2.046314 TGTTGGGCTTCTAGCGGC 60.046 61.111 0.00 0.00 43.62 6.53
365 370 2.824489 GTTGGGCTTCTAGCGGCC 60.824 66.667 14.73 14.73 43.62 6.13
366 371 3.009115 TTGGGCTTCTAGCGGCCT 61.009 61.111 19.93 0.00 46.80 5.19
367 372 1.687840 TTGGGCTTCTAGCGGCCTA 60.688 57.895 19.93 14.17 46.80 3.93
368 373 1.686325 TTGGGCTTCTAGCGGCCTAG 61.686 60.000 19.93 0.00 46.80 3.02
369 374 2.029815 GGCTTCTAGCGGCCTAGC 59.970 66.667 15.49 0.00 43.62 3.42
370 375 2.029815 GCTTCTAGCGGCCTAGCC 59.970 66.667 0.00 0.00 46.75 3.93
380 385 3.331002 GGCCTAGCCCATTAAGCTC 57.669 57.895 0.00 0.00 44.06 4.09
381 386 0.474184 GGCCTAGCCCATTAAGCTCA 59.526 55.000 0.00 0.00 44.06 4.26
382 387 1.074566 GGCCTAGCCCATTAAGCTCAT 59.925 52.381 0.00 0.00 44.06 2.90
383 388 2.489802 GGCCTAGCCCATTAAGCTCATT 60.490 50.000 0.00 0.00 44.06 2.57
384 389 3.225940 GCCTAGCCCATTAAGCTCATTT 58.774 45.455 0.00 0.00 41.83 2.32
385 390 3.254411 GCCTAGCCCATTAAGCTCATTTC 59.746 47.826 0.00 0.00 41.83 2.17
386 391 4.723309 CCTAGCCCATTAAGCTCATTTCT 58.277 43.478 0.00 0.00 41.83 2.52
387 392 4.518211 CCTAGCCCATTAAGCTCATTTCTG 59.482 45.833 0.00 0.00 41.83 3.02
388 393 3.294214 AGCCCATTAAGCTCATTTCTGG 58.706 45.455 0.00 0.00 34.91 3.86
389 394 2.223900 GCCCATTAAGCTCATTTCTGGC 60.224 50.000 0.00 0.00 0.00 4.85
390 395 2.363359 CCCATTAAGCTCATTTCTGGCC 59.637 50.000 0.00 0.00 0.00 5.36
391 396 3.294214 CCATTAAGCTCATTTCTGGCCT 58.706 45.455 3.32 0.00 0.00 5.19
392 397 3.067742 CCATTAAGCTCATTTCTGGCCTG 59.932 47.826 3.32 2.92 0.00 4.85
393 398 2.425143 TAAGCTCATTTCTGGCCTGG 57.575 50.000 10.07 0.00 0.00 4.45
394 399 0.407139 AAGCTCATTTCTGGCCTGGT 59.593 50.000 10.07 0.00 0.00 4.00
395 400 1.289160 AGCTCATTTCTGGCCTGGTA 58.711 50.000 10.07 0.00 0.00 3.25
396 401 1.211457 AGCTCATTTCTGGCCTGGTAG 59.789 52.381 10.07 0.00 0.00 3.18
397 402 1.748591 GCTCATTTCTGGCCTGGTAGG 60.749 57.143 10.07 0.32 38.80 3.18
398 403 0.918983 TCATTTCTGGCCTGGTAGGG 59.081 55.000 10.07 0.00 35.37 3.53
399 404 0.918983 CATTTCTGGCCTGGTAGGGA 59.081 55.000 10.07 0.00 35.37 4.20
400 405 0.919710 ATTTCTGGCCTGGTAGGGAC 59.080 55.000 10.07 0.00 35.37 4.46
401 406 1.550130 TTTCTGGCCTGGTAGGGACG 61.550 60.000 10.07 0.00 37.14 4.79
402 407 2.363795 CTGGCCTGGTAGGGACGA 60.364 66.667 3.32 0.00 37.14 4.20
403 408 1.987855 CTGGCCTGGTAGGGACGAA 60.988 63.158 3.32 0.00 37.14 3.85
404 409 2.240162 CTGGCCTGGTAGGGACGAAC 62.240 65.000 3.32 0.00 37.14 3.95
405 410 2.582978 GCCTGGTAGGGACGAACC 59.417 66.667 0.00 0.00 39.26 3.62
406 411 2.890371 CCTGGTAGGGACGAACCG 59.110 66.667 0.00 0.00 41.22 4.44
407 412 1.980772 CCTGGTAGGGACGAACCGT 60.981 63.158 0.00 0.00 45.10 4.83
408 413 1.538687 CCTGGTAGGGACGAACCGTT 61.539 60.000 0.00 0.00 41.37 4.44
409 414 0.319405 CTGGTAGGGACGAACCGTTT 59.681 55.000 0.00 0.00 41.37 3.60
410 415 0.318120 TGGTAGGGACGAACCGTTTC 59.682 55.000 0.00 0.00 41.37 2.78
423 428 3.515071 ACCGTTTCGTTTCTTTCATCG 57.485 42.857 0.00 0.00 0.00 3.84
424 429 2.230864 CCGTTTCGTTTCTTTCATCGC 58.769 47.619 0.00 0.00 0.00 4.58
425 430 2.349060 CCGTTTCGTTTCTTTCATCGCA 60.349 45.455 0.00 0.00 0.00 5.10
426 431 2.645647 CGTTTCGTTTCTTTCATCGCAC 59.354 45.455 0.00 0.00 0.00 5.34
427 432 2.570468 TTCGTTTCTTTCATCGCACG 57.430 45.000 0.00 0.00 0.00 5.34
428 433 1.773410 TCGTTTCTTTCATCGCACGA 58.227 45.000 0.00 0.00 34.45 4.35
429 434 2.128821 TCGTTTCTTTCATCGCACGAA 58.871 42.857 0.00 0.00 33.94 3.85
430 435 2.097104 TCGTTTCTTTCATCGCACGAAC 60.097 45.455 0.00 0.00 33.94 3.95
431 436 2.571206 GTTTCTTTCATCGCACGAACC 58.429 47.619 0.00 0.00 0.00 3.62
432 437 0.787787 TTCTTTCATCGCACGAACCG 59.212 50.000 0.00 0.00 0.00 4.44
433 438 0.319211 TCTTTCATCGCACGAACCGT 60.319 50.000 0.00 0.00 42.36 4.83
434 439 0.511221 CTTTCATCGCACGAACCGTT 59.489 50.000 0.00 0.00 38.32 4.44
435 440 0.938713 TTTCATCGCACGAACCGTTT 59.061 45.000 0.00 0.00 38.32 3.60
436 441 0.938713 TTCATCGCACGAACCGTTTT 59.061 45.000 0.00 0.00 38.32 2.43
437 442 0.509499 TCATCGCACGAACCGTTTTC 59.491 50.000 0.00 0.00 38.32 2.29
438 443 0.511221 CATCGCACGAACCGTTTTCT 59.489 50.000 0.00 0.00 38.32 2.52
439 444 1.070175 CATCGCACGAACCGTTTTCTT 60.070 47.619 0.00 0.00 38.32 2.52
440 445 0.578211 TCGCACGAACCGTTTTCTTC 59.422 50.000 0.00 0.00 38.32 2.87
441 446 0.383860 CGCACGAACCGTTTTCTTCC 60.384 55.000 0.00 0.00 38.32 3.46
442 447 0.658897 GCACGAACCGTTTTCTTCCA 59.341 50.000 0.00 0.00 38.32 3.53
443 448 1.596220 GCACGAACCGTTTTCTTCCAC 60.596 52.381 0.00 0.00 38.32 4.02
444 449 1.937899 CACGAACCGTTTTCTTCCACT 59.062 47.619 0.00 0.00 38.32 4.00
445 450 2.353579 CACGAACCGTTTTCTTCCACTT 59.646 45.455 0.00 0.00 38.32 3.16
446 451 2.610833 ACGAACCGTTTTCTTCCACTTC 59.389 45.455 0.00 0.00 36.35 3.01
447 452 2.348218 CGAACCGTTTTCTTCCACTTCG 60.348 50.000 0.00 0.00 0.00 3.79
448 453 0.942252 ACCGTTTTCTTCCACTTCGC 59.058 50.000 0.00 0.00 0.00 4.70
449 454 0.110823 CCGTTTTCTTCCACTTCGCG 60.111 55.000 0.00 0.00 0.00 5.87
450 455 0.110823 CGTTTTCTTCCACTTCGCGG 60.111 55.000 6.13 0.00 0.00 6.46
451 456 0.942252 GTTTTCTTCCACTTCGCGGT 59.058 50.000 6.13 0.00 0.00 5.68
452 457 0.941542 TTTTCTTCCACTTCGCGGTG 59.058 50.000 6.13 7.48 37.00 4.94
460 465 4.749310 CTTCGCGGTGGCAGCTCT 62.749 66.667 15.48 0.00 39.92 4.09
461 466 4.742201 TTCGCGGTGGCAGCTCTC 62.742 66.667 15.48 2.97 39.92 3.20
464 469 4.385405 GCGGTGGCAGCTCTCTGT 62.385 66.667 15.48 0.00 42.29 3.41
465 470 3.006756 GCGGTGGCAGCTCTCTGTA 62.007 63.158 15.48 0.00 42.29 2.74
466 471 1.591703 CGGTGGCAGCTCTCTGTAA 59.408 57.895 15.48 0.00 42.29 2.41
467 472 0.037326 CGGTGGCAGCTCTCTGTAAA 60.037 55.000 15.48 0.00 42.29 2.01
468 473 1.406069 CGGTGGCAGCTCTCTGTAAAT 60.406 52.381 15.48 0.00 42.29 1.40
469 474 2.159099 CGGTGGCAGCTCTCTGTAAATA 60.159 50.000 15.48 0.00 42.29 1.40
470 475 3.678806 CGGTGGCAGCTCTCTGTAAATAA 60.679 47.826 15.48 0.00 42.29 1.40
471 476 4.261801 GGTGGCAGCTCTCTGTAAATAAA 58.738 43.478 9.90 0.00 42.29 1.40
472 477 4.333926 GGTGGCAGCTCTCTGTAAATAAAG 59.666 45.833 9.90 0.00 42.29 1.85
473 478 4.938226 GTGGCAGCTCTCTGTAAATAAAGT 59.062 41.667 0.00 0.00 42.29 2.66
474 479 5.064071 GTGGCAGCTCTCTGTAAATAAAGTC 59.936 44.000 0.00 0.00 42.29 3.01
475 480 5.178797 GGCAGCTCTCTGTAAATAAAGTCA 58.821 41.667 0.00 0.00 42.29 3.41
476 481 5.643777 GGCAGCTCTCTGTAAATAAAGTCAA 59.356 40.000 0.00 0.00 42.29 3.18
477 482 6.402658 GGCAGCTCTCTGTAAATAAAGTCAAC 60.403 42.308 0.00 0.00 42.29 3.18
478 483 6.370166 GCAGCTCTCTGTAAATAAAGTCAACT 59.630 38.462 0.00 0.00 42.29 3.16
479 484 7.412455 GCAGCTCTCTGTAAATAAAGTCAACTC 60.412 40.741 0.00 0.00 42.29 3.01
480 485 7.064016 CAGCTCTCTGTAAATAAAGTCAACTCC 59.936 40.741 0.00 0.00 35.61 3.85
481 486 6.874134 GCTCTCTGTAAATAAAGTCAACTCCA 59.126 38.462 0.00 0.00 0.00 3.86
482 487 7.064016 GCTCTCTGTAAATAAAGTCAACTCCAG 59.936 40.741 0.00 0.00 0.00 3.86
483 488 7.386851 TCTCTGTAAATAAAGTCAACTCCAGG 58.613 38.462 0.00 0.00 0.00 4.45
484 489 7.234782 TCTCTGTAAATAAAGTCAACTCCAGGA 59.765 37.037 0.00 0.00 0.00 3.86
485 490 7.918076 TCTGTAAATAAAGTCAACTCCAGGAT 58.082 34.615 0.00 0.00 0.00 3.24
486 491 8.383175 TCTGTAAATAAAGTCAACTCCAGGATT 58.617 33.333 0.00 0.00 0.00 3.01
487 492 8.934023 TGTAAATAAAGTCAACTCCAGGATTT 57.066 30.769 0.00 0.00 0.00 2.17
488 493 9.010029 TGTAAATAAAGTCAACTCCAGGATTTC 57.990 33.333 0.00 0.00 0.00 2.17
489 494 7.468141 AAATAAAGTCAACTCCAGGATTTCC 57.532 36.000 0.00 0.00 0.00 3.13
490 495 2.770164 AGTCAACTCCAGGATTTCCG 57.230 50.000 0.00 0.00 42.08 4.30
491 496 2.257207 AGTCAACTCCAGGATTTCCGA 58.743 47.619 0.00 0.00 42.08 4.55
492 497 2.840651 AGTCAACTCCAGGATTTCCGAT 59.159 45.455 0.00 0.00 42.08 4.18
493 498 3.264450 AGTCAACTCCAGGATTTCCGATT 59.736 43.478 0.00 0.00 42.08 3.34
494 499 3.623510 GTCAACTCCAGGATTTCCGATTC 59.376 47.826 0.00 0.00 42.08 2.52
495 500 3.519510 TCAACTCCAGGATTTCCGATTCT 59.480 43.478 0.00 0.00 42.08 2.40
496 501 3.550437 ACTCCAGGATTTCCGATTCTG 57.450 47.619 0.00 0.00 42.08 3.02
497 502 2.171448 ACTCCAGGATTTCCGATTCTGG 59.829 50.000 6.97 6.97 44.54 3.86
498 503 1.490490 TCCAGGATTTCCGATTCTGGG 59.510 52.381 12.29 0.00 43.66 4.45
499 504 1.490490 CCAGGATTTCCGATTCTGGGA 59.510 52.381 5.58 0.00 40.78 4.37
500 505 2.107204 CCAGGATTTCCGATTCTGGGAT 59.893 50.000 5.58 0.00 40.78 3.85
501 506 3.406764 CAGGATTTCCGATTCTGGGATC 58.593 50.000 0.00 0.00 42.08 3.36
502 507 2.037772 AGGATTTCCGATTCTGGGATCG 59.962 50.000 4.44 4.44 46.33 3.69
503 508 1.801178 GATTTCCGATTCTGGGATCGC 59.199 52.381 2.14 2.14 45.63 4.58
504 509 0.179056 TTTCCGATTCTGGGATCGCC 60.179 55.000 7.38 0.12 45.63 5.54
505 510 2.356313 CCGATTCTGGGATCGCCG 60.356 66.667 7.38 0.56 45.63 6.46
506 511 2.728180 CGATTCTGGGATCGCCGA 59.272 61.111 7.38 3.34 41.90 5.54
507 512 1.067416 CGATTCTGGGATCGCCGAA 59.933 57.895 16.85 16.85 41.90 4.30
508 513 0.529773 CGATTCTGGGATCGCCGAAA 60.530 55.000 18.10 6.00 41.90 3.46
509 514 0.938008 GATTCTGGGATCGCCGAAAC 59.062 55.000 18.10 12.95 33.83 2.78
510 515 0.463833 ATTCTGGGATCGCCGAAACC 60.464 55.000 18.10 0.00 33.83 3.27
511 516 2.845752 TTCTGGGATCGCCGAAACCG 62.846 60.000 13.10 0.00 33.83 4.44
542 547 2.427232 TTTTGTACGTAGACGCTGCT 57.573 45.000 1.14 0.00 44.43 4.24
543 548 2.427232 TTTGTACGTAGACGCTGCTT 57.573 45.000 1.14 0.00 44.43 3.91
544 549 2.427232 TTGTACGTAGACGCTGCTTT 57.573 45.000 1.14 0.00 44.43 3.51
545 550 1.693467 TGTACGTAGACGCTGCTTTG 58.307 50.000 1.14 0.00 44.43 2.77
546 551 1.267533 TGTACGTAGACGCTGCTTTGA 59.732 47.619 1.14 0.00 44.43 2.69
547 552 2.094906 TGTACGTAGACGCTGCTTTGAT 60.095 45.455 1.14 0.00 44.43 2.57
548 553 1.630148 ACGTAGACGCTGCTTTGATC 58.370 50.000 1.14 0.00 44.43 2.92
549 554 0.924090 CGTAGACGCTGCTTTGATCC 59.076 55.000 0.00 0.00 0.00 3.36
550 555 0.924090 GTAGACGCTGCTTTGATCCG 59.076 55.000 0.00 0.00 0.00 4.18
551 556 0.179111 TAGACGCTGCTTTGATCCGG 60.179 55.000 0.00 0.00 0.00 5.14
552 557 2.436646 ACGCTGCTTTGATCCGGG 60.437 61.111 0.00 0.00 0.00 5.73
553 558 2.125147 CGCTGCTTTGATCCGGGA 60.125 61.111 0.00 0.00 0.00 5.14
554 559 1.745115 CGCTGCTTTGATCCGGGAA 60.745 57.895 0.00 0.00 0.00 3.97
555 560 1.709147 CGCTGCTTTGATCCGGGAAG 61.709 60.000 0.00 2.48 0.00 3.46
556 561 0.678048 GCTGCTTTGATCCGGGAAGT 60.678 55.000 0.00 0.00 0.00 3.01
557 562 1.373570 CTGCTTTGATCCGGGAAGTC 58.626 55.000 0.00 0.00 0.00 3.01
558 563 0.690192 TGCTTTGATCCGGGAAGTCA 59.310 50.000 0.00 0.00 0.00 3.41
559 564 1.339055 TGCTTTGATCCGGGAAGTCAG 60.339 52.381 0.00 0.00 0.00 3.51
560 565 1.373570 CTTTGATCCGGGAAGTCAGC 58.626 55.000 0.00 0.00 0.00 4.26
561 566 0.984230 TTTGATCCGGGAAGTCAGCT 59.016 50.000 0.00 0.00 0.00 4.24
562 567 0.984230 TTGATCCGGGAAGTCAGCTT 59.016 50.000 0.00 0.00 37.71 3.74
570 575 3.151461 GAAGTCAGCTTCCTGGAGC 57.849 57.895 9.30 9.30 43.95 4.70
571 576 0.392327 GAAGTCAGCTTCCTGGAGCC 60.392 60.000 12.53 1.91 43.95 4.70
572 577 2.125350 GTCAGCTTCCTGGAGCCG 60.125 66.667 12.53 5.19 43.74 5.52
573 578 3.393970 TCAGCTTCCTGGAGCCGG 61.394 66.667 0.00 0.00 43.74 6.13
574 579 4.479993 CAGCTTCCTGGAGCCGGG 62.480 72.222 8.14 8.14 43.74 5.73
594 599 4.400961 GTTCGGGCCAGCTCTGCT 62.401 66.667 4.39 0.00 40.77 4.24
595 600 4.087892 TTCGGGCCAGCTCTGCTC 62.088 66.667 4.39 0.00 36.40 4.26
601 606 4.218578 CCAGCTCTGCTCGCGGAT 62.219 66.667 6.13 0.00 36.40 4.18
602 607 2.202851 CAGCTCTGCTCGCGGATT 60.203 61.111 6.13 0.00 36.40 3.01
603 608 2.105930 AGCTCTGCTCGCGGATTC 59.894 61.111 6.13 0.00 30.62 2.52
604 609 3.326210 GCTCTGCTCGCGGATTCG 61.326 66.667 6.13 0.00 39.81 3.34
635 640 4.069232 CTGGCGAGCTCCCGAACA 62.069 66.667 8.47 0.59 0.00 3.18
636 641 3.997064 CTGGCGAGCTCCCGAACAG 62.997 68.421 8.47 6.83 32.78 3.16
637 642 4.821589 GGCGAGCTCCCGAACAGG 62.822 72.222 8.47 0.00 40.63 4.00
639 644 4.821589 CGAGCTCCCGAACAGGCC 62.822 72.222 8.47 0.00 39.21 5.19
689 694 1.373748 CCCGTTCACACGTCCGAAT 60.374 57.895 0.00 0.00 45.62 3.34
692 697 1.414897 GTTCACACGTCCGAATCGC 59.585 57.895 0.00 0.00 0.00 4.58
704 709 3.362851 GAATCGCAACACGTCGCCC 62.363 63.158 0.00 0.00 44.19 6.13
706 711 3.876589 ATCGCAACACGTCGCCCTT 62.877 57.895 0.00 0.00 44.19 3.95
707 712 3.645975 CGCAACACGTCGCCCTTT 61.646 61.111 0.00 0.00 36.87 3.11
717 724 1.373246 TCGCCCTTTCGTACCGTTG 60.373 57.895 0.00 0.00 0.00 4.10
726 733 3.560278 GTACCGTTGGATGCGCCG 61.560 66.667 4.18 0.00 40.66 6.46
727 734 4.823419 TACCGTTGGATGCGCCGG 62.823 66.667 17.23 17.23 45.72 6.13
766 773 2.509052 TCATTGATCGCTACCGGAAG 57.491 50.000 9.46 0.00 34.56 3.46
767 774 4.164420 GATCATTGATCGCTACCGGAAGG 61.164 52.174 9.46 0.00 42.59 3.46
768 775 6.350398 GATCATTGATCGCTACCGGAAGGA 62.350 50.000 9.46 0.00 40.72 3.36
769 776 7.743500 GATCATTGATCGCTACCGGAAGGAA 62.743 48.000 9.46 0.00 40.72 3.36
782 789 4.657824 AGGAACCGTGTGTCCGCG 62.658 66.667 0.00 0.00 44.04 6.46
890 901 4.900054 GGGGCCTATATATACACCTTCGAT 59.100 45.833 0.84 0.00 0.00 3.59
909 920 0.740868 TCGCTCTCCATTTTCCGCAG 60.741 55.000 0.00 0.00 0.00 5.18
930 941 0.650512 ACACTCGCACGAACACTTTG 59.349 50.000 0.00 0.00 0.00 2.77
931 942 0.654472 CACTCGCACGAACACTTTGC 60.654 55.000 0.00 0.00 0.00 3.68
932 943 1.087202 ACTCGCACGAACACTTTGCA 61.087 50.000 0.00 0.00 35.93 4.08
956 968 2.243478 TCCTAGGAGCTCAGTCTGTCAT 59.757 50.000 17.19 0.00 0.00 3.06
965 977 3.882888 GCTCAGTCTGTCATCTACTAGCT 59.117 47.826 0.00 0.00 0.00 3.32
1233 1248 1.445410 CAACCTGCAGCGCTACGTA 60.445 57.895 10.99 0.00 0.00 3.57
1244 1259 0.179119 CGCTACGTAAACTCCCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
1261 1276 0.603707 CAGCGGCAAGAAGGTCTTCA 60.604 55.000 12.54 0.00 41.84 3.02
1316 1331 2.021068 ATCGACCCGTGAGCTCCATG 62.021 60.000 12.15 4.91 0.00 3.66
1328 1357 0.109913 GCTCCATGCATCCATCTCCA 59.890 55.000 0.00 0.00 42.31 3.86
1331 1360 2.306219 CTCCATGCATCCATCTCCATCT 59.694 50.000 0.00 0.00 0.00 2.90
1363 1400 4.367023 GCTACGTGCGGTGTGGGA 62.367 66.667 0.00 0.00 0.00 4.37
1400 1442 2.227388 GCTTTGTGATGTCACTTGAGGG 59.773 50.000 13.71 1.36 46.55 4.30
1577 1637 1.065199 ACTCTGTGTGGCACCATATGG 60.065 52.381 20.68 20.68 42.17 2.74
1626 1686 6.649155 TCTAATGTCTTGCATACTTTAGCCA 58.351 36.000 19.91 9.49 36.67 4.75
1648 1708 4.195334 GGGTGGCAGCCGATCCAT 62.195 66.667 21.35 0.00 34.47 3.41
1656 1716 1.065928 AGCCGATCCATTCGTCGTC 59.934 57.895 0.00 0.00 46.65 4.20
1680 1740 6.752351 TCGTTTTCGTCAAAATGGAAAATGAA 59.248 30.769 14.49 3.39 45.40 2.57
1687 1747 6.529125 CGTCAAAATGGAAAATGAATCTGGAG 59.471 38.462 0.00 0.00 0.00 3.86
1696 1756 7.452501 TGGAAAATGAATCTGGAGAAAATGAGT 59.547 33.333 0.00 0.00 0.00 3.41
1708 1768 6.080406 GGAGAAAATGAGTGACGAACAAATC 58.920 40.000 0.00 0.00 0.00 2.17
1726 1786 9.411801 GAACAAATCGAGCTGTCAGATAATATA 57.588 33.333 3.32 0.00 0.00 0.86
1727 1787 9.764363 AACAAATCGAGCTGTCAGATAATATAA 57.236 29.630 3.32 0.00 0.00 0.98
1728 1788 9.935241 ACAAATCGAGCTGTCAGATAATATAAT 57.065 29.630 3.32 0.00 0.00 1.28
1730 1790 8.417780 AATCGAGCTGTCAGATAATATAATGC 57.582 34.615 3.32 0.00 0.00 3.56
1731 1791 7.163001 TCGAGCTGTCAGATAATATAATGCT 57.837 36.000 3.32 0.00 0.00 3.79
1732 1792 7.254137 TCGAGCTGTCAGATAATATAATGCTC 58.746 38.462 3.32 0.00 39.54 4.26
1733 1793 6.475076 CGAGCTGTCAGATAATATAATGCTCC 59.525 42.308 3.32 0.00 39.70 4.70
1734 1794 6.648192 AGCTGTCAGATAATATAATGCTCCC 58.352 40.000 3.32 0.00 0.00 4.30
1735 1795 5.521735 GCTGTCAGATAATATAATGCTCCCG 59.478 44.000 3.32 0.00 0.00 5.14
1736 1796 6.605471 TGTCAGATAATATAATGCTCCCGT 57.395 37.500 0.00 0.00 0.00 5.28
1737 1797 6.398095 TGTCAGATAATATAATGCTCCCGTG 58.602 40.000 0.00 0.00 0.00 4.94
1738 1798 6.014584 TGTCAGATAATATAATGCTCCCGTGT 60.015 38.462 0.00 0.00 0.00 4.49
1739 1799 6.531948 GTCAGATAATATAATGCTCCCGTGTC 59.468 42.308 0.00 0.00 0.00 3.67
1740 1800 5.812642 CAGATAATATAATGCTCCCGTGTCC 59.187 44.000 0.00 0.00 0.00 4.02
1741 1801 3.418684 AATATAATGCTCCCGTGTCCC 57.581 47.619 0.00 0.00 0.00 4.46
1742 1802 2.097110 TATAATGCTCCCGTGTCCCT 57.903 50.000 0.00 0.00 0.00 4.20
1743 1803 0.759346 ATAATGCTCCCGTGTCCCTC 59.241 55.000 0.00 0.00 0.00 4.30
1744 1804 1.672854 TAATGCTCCCGTGTCCCTCG 61.673 60.000 0.00 0.00 0.00 4.63
1745 1805 4.988716 TGCTCCCGTGTCCCTCGT 62.989 66.667 0.00 0.00 0.00 4.18
1746 1806 3.692406 GCTCCCGTGTCCCTCGTT 61.692 66.667 0.00 0.00 0.00 3.85
1747 1807 3.057337 CTCCCGTGTCCCTCGTTT 58.943 61.111 0.00 0.00 0.00 3.60
1748 1808 1.374252 CTCCCGTGTCCCTCGTTTG 60.374 63.158 0.00 0.00 0.00 2.93
1749 1809 2.358247 CCCGTGTCCCTCGTTTGG 60.358 66.667 0.00 0.00 0.00 3.28
1751 1811 3.047877 CGTGTCCCTCGTTTGGGC 61.048 66.667 6.13 0.00 46.67 5.36
1752 1812 2.112297 GTGTCCCTCGTTTGGGCA 59.888 61.111 6.13 0.00 46.67 5.36
1753 1813 1.527380 GTGTCCCTCGTTTGGGCAA 60.527 57.895 6.13 0.00 46.67 4.52
1754 1814 1.527380 TGTCCCTCGTTTGGGCAAC 60.527 57.895 6.13 2.27 46.67 4.17
1755 1815 1.527380 GTCCCTCGTTTGGGCAACA 60.527 57.895 6.13 0.00 46.67 3.33
1756 1816 1.527380 TCCCTCGTTTGGGCAACAC 60.527 57.895 6.13 0.00 46.67 3.32
1757 1817 2.637025 CCTCGTTTGGGCAACACG 59.363 61.111 0.00 0.00 34.68 4.49
1758 1818 2.637025 CTCGTTTGGGCAACACGG 59.363 61.111 0.03 0.00 34.68 4.94
1759 1819 2.902846 TCGTTTGGGCAACACGGG 60.903 61.111 0.03 0.00 34.68 5.28
1760 1820 4.639171 CGTTTGGGCAACACGGGC 62.639 66.667 0.00 0.00 34.68 6.13
1767 1827 2.904866 GCAACACGGGCCAGAACA 60.905 61.111 10.86 0.00 0.00 3.18
1772 1832 1.371183 CACGGGCCAGAACAGAAGA 59.629 57.895 10.86 0.00 0.00 2.87
1798 1859 0.620700 GGGGGAAGAGAACCCTAGCA 60.621 60.000 0.00 0.00 46.51 3.49
1812 1873 2.731691 CTAGCAGCCACCACCACGTT 62.732 60.000 0.00 0.00 0.00 3.99
1841 1907 3.657727 AGAAGAAGGGATCCAAAGAACCA 59.342 43.478 15.23 0.00 36.67 3.67
1863 1929 6.070767 ACCATCGGAGATCTTCTTAGTTTTGA 60.071 38.462 0.00 0.00 45.12 2.69
1886 1952 8.029642 TGATCATTTCATCTTCATCATCATCG 57.970 34.615 0.00 0.00 0.00 3.84
1898 1964 1.694169 ATCATCGCCCCCTTCACCT 60.694 57.895 0.00 0.00 0.00 4.00
2010 2080 4.503910 TCTTGTGGATCTTCACGGTATTG 58.496 43.478 0.00 0.00 40.31 1.90
2013 2083 3.513912 TGTGGATCTTCACGGTATTGTCT 59.486 43.478 0.00 0.00 40.31 3.41
2026 2096 8.425703 TCACGGTATTGTCTATATGGATTTCAA 58.574 33.333 0.00 0.00 0.00 2.69
2042 2112 5.131142 GGATTTCAAGGGTTCTATCTCTGGA 59.869 44.000 0.00 0.00 0.00 3.86
2201 2271 7.180587 TGTTGTTATACTGTGGTGAACCCTATA 59.819 37.037 0.00 0.00 34.29 1.31
2209 2280 4.042311 TGTGGTGAACCCTATATGTGTGTT 59.958 41.667 0.00 0.00 34.29 3.32
2248 2320 3.172050 CAACACGATCTCAAGACCTACG 58.828 50.000 0.00 0.00 0.00 3.51
2268 2340 6.674519 CCTACGCAGGTAACACATATTGTTTG 60.675 42.308 0.00 3.92 40.27 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.038714 GGATGAGTTGGTTGAATAGTTCCATC 59.961 42.308 0.00 0.00 0.00 3.51
1 2 5.888161 GGATGAGTTGGTTGAATAGTTCCAT 59.112 40.000 0.00 0.00 0.00 3.41
2 3 5.222027 TGGATGAGTTGGTTGAATAGTTCCA 60.222 40.000 0.00 0.00 0.00 3.53
3 4 5.253330 TGGATGAGTTGGTTGAATAGTTCC 58.747 41.667 0.00 0.00 0.00 3.62
4 5 7.396540 AATGGATGAGTTGGTTGAATAGTTC 57.603 36.000 0.00 0.00 0.00 3.01
5 6 8.877864 TTAATGGATGAGTTGGTTGAATAGTT 57.122 30.769 0.00 0.00 0.00 2.24
6 7 8.877864 TTTAATGGATGAGTTGGTTGAATAGT 57.122 30.769 0.00 0.00 0.00 2.12
7 8 9.793252 CTTTTAATGGATGAGTTGGTTGAATAG 57.207 33.333 0.00 0.00 0.00 1.73
8 9 9.308000 ACTTTTAATGGATGAGTTGGTTGAATA 57.692 29.630 0.00 0.00 0.00 1.75
9 10 8.193953 ACTTTTAATGGATGAGTTGGTTGAAT 57.806 30.769 0.00 0.00 0.00 2.57
10 11 7.595819 ACTTTTAATGGATGAGTTGGTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
11 12 8.160765 TCTACTTTTAATGGATGAGTTGGTTGA 58.839 33.333 0.00 0.00 0.00 3.18
12 13 8.335532 TCTACTTTTAATGGATGAGTTGGTTG 57.664 34.615 0.00 0.00 0.00 3.77
13 14 8.383175 TCTCTACTTTTAATGGATGAGTTGGTT 58.617 33.333 0.00 0.00 0.00 3.67
14 15 7.918076 TCTCTACTTTTAATGGATGAGTTGGT 58.082 34.615 0.00 0.00 0.00 3.67
15 16 8.834465 CATCTCTACTTTTAATGGATGAGTTGG 58.166 37.037 0.00 0.00 33.25 3.77
16 17 9.605275 TCATCTCTACTTTTAATGGATGAGTTG 57.395 33.333 0.00 0.00 34.96 3.16
18 19 9.775854 CATCATCTCTACTTTTAATGGATGAGT 57.224 33.333 0.00 0.00 40.45 3.41
19 20 9.993454 TCATCATCTCTACTTTTAATGGATGAG 57.007 33.333 0.00 0.00 40.45 2.90
20 21 9.770097 GTCATCATCTCTACTTTTAATGGATGA 57.230 33.333 0.00 0.00 41.05 2.92
21 22 8.997323 GGTCATCATCTCTACTTTTAATGGATG 58.003 37.037 0.00 0.00 0.00 3.51
22 23 8.160106 GGGTCATCATCTCTACTTTTAATGGAT 58.840 37.037 0.00 0.00 0.00 3.41
23 24 7.127186 TGGGTCATCATCTCTACTTTTAATGGA 59.873 37.037 0.00 0.00 0.00 3.41
24 25 7.282585 TGGGTCATCATCTCTACTTTTAATGG 58.717 38.462 0.00 0.00 0.00 3.16
25 26 8.781196 CATGGGTCATCATCTCTACTTTTAATG 58.219 37.037 0.00 0.00 0.00 1.90
26 27 8.717717 TCATGGGTCATCATCTCTACTTTTAAT 58.282 33.333 0.00 0.00 0.00 1.40
27 28 8.089625 TCATGGGTCATCATCTCTACTTTTAA 57.910 34.615 0.00 0.00 0.00 1.52
28 29 7.675161 TCATGGGTCATCATCTCTACTTTTA 57.325 36.000 0.00 0.00 0.00 1.52
29 30 6.566079 TCATGGGTCATCATCTCTACTTTT 57.434 37.500 0.00 0.00 0.00 2.27
30 31 6.328410 TGATCATGGGTCATCATCTCTACTTT 59.672 38.462 0.00 0.00 0.00 2.66
31 32 5.842874 TGATCATGGGTCATCATCTCTACTT 59.157 40.000 0.00 0.00 0.00 2.24
32 33 5.245751 GTGATCATGGGTCATCATCTCTACT 59.754 44.000 0.00 0.00 31.71 2.57
33 34 5.477510 GTGATCATGGGTCATCATCTCTAC 58.522 45.833 0.00 0.00 31.71 2.59
34 35 4.219288 CGTGATCATGGGTCATCATCTCTA 59.781 45.833 7.06 0.00 31.71 2.43
35 36 3.006644 CGTGATCATGGGTCATCATCTCT 59.993 47.826 7.06 0.00 31.71 3.10
36 37 3.324117 CGTGATCATGGGTCATCATCTC 58.676 50.000 7.06 0.00 31.71 2.75
37 38 2.549563 GCGTGATCATGGGTCATCATCT 60.550 50.000 16.59 0.00 31.71 2.90
38 39 1.802960 GCGTGATCATGGGTCATCATC 59.197 52.381 16.59 0.00 31.71 2.92
39 40 1.544093 GGCGTGATCATGGGTCATCAT 60.544 52.381 16.59 0.00 31.71 2.45
40 41 0.179048 GGCGTGATCATGGGTCATCA 60.179 55.000 16.59 0.00 0.00 3.07
41 42 0.179048 TGGCGTGATCATGGGTCATC 60.179 55.000 16.59 0.00 0.00 2.92
42 43 0.179037 CTGGCGTGATCATGGGTCAT 60.179 55.000 16.59 0.00 0.00 3.06
43 44 1.221566 CTGGCGTGATCATGGGTCA 59.778 57.895 16.59 7.64 0.00 4.02
44 45 2.182842 GCTGGCGTGATCATGGGTC 61.183 63.158 16.59 3.25 0.00 4.46
45 46 2.124570 GCTGGCGTGATCATGGGT 60.125 61.111 16.59 0.00 0.00 4.51
46 47 2.903855 GGCTGGCGTGATCATGGG 60.904 66.667 16.59 2.26 0.00 4.00
47 48 1.527611 ATGGCTGGCGTGATCATGG 60.528 57.895 16.59 4.79 0.00 3.66
48 49 1.652563 CATGGCTGGCGTGATCATG 59.347 57.895 17.65 10.76 0.00 3.07
49 50 2.191513 GCATGGCTGGCGTGATCAT 61.192 57.895 25.49 0.00 0.00 2.45
50 51 2.825387 GCATGGCTGGCGTGATCA 60.825 61.111 25.49 0.00 0.00 2.92
51 52 2.515523 AGCATGGCTGGCGTGATC 60.516 61.111 25.49 9.88 37.57 2.92
62 63 0.250640 GGGTCATAGAGGCAGCATGG 60.251 60.000 0.00 0.00 35.86 3.66
63 64 0.763652 AGGGTCATAGAGGCAGCATG 59.236 55.000 0.00 0.00 40.87 4.06
64 65 1.055040 GAGGGTCATAGAGGCAGCAT 58.945 55.000 0.00 0.00 0.00 3.79
65 66 1.050988 GGAGGGTCATAGAGGCAGCA 61.051 60.000 0.00 0.00 0.00 4.41
66 67 1.050988 TGGAGGGTCATAGAGGCAGC 61.051 60.000 0.00 0.00 0.00 5.25
67 68 1.347050 CATGGAGGGTCATAGAGGCAG 59.653 57.143 0.00 0.00 0.00 4.85
68 69 1.062198 TCATGGAGGGTCATAGAGGCA 60.062 52.381 0.00 0.00 0.00 4.75
69 70 1.346068 GTCATGGAGGGTCATAGAGGC 59.654 57.143 0.00 0.00 0.00 4.70
70 71 2.896685 GAGTCATGGAGGGTCATAGAGG 59.103 54.545 0.00 0.00 0.00 3.69
71 72 3.320541 GTGAGTCATGGAGGGTCATAGAG 59.679 52.174 0.00 0.00 0.00 2.43
72 73 3.300388 GTGAGTCATGGAGGGTCATAGA 58.700 50.000 0.00 0.00 0.00 1.98
73 74 2.366916 GGTGAGTCATGGAGGGTCATAG 59.633 54.545 0.00 0.00 0.00 2.23
74 75 2.292851 TGGTGAGTCATGGAGGGTCATA 60.293 50.000 0.00 0.00 0.00 2.15
75 76 1.207791 GGTGAGTCATGGAGGGTCAT 58.792 55.000 0.00 0.00 0.00 3.06
76 77 0.178906 TGGTGAGTCATGGAGGGTCA 60.179 55.000 0.00 0.00 0.00 4.02
77 78 0.984230 TTGGTGAGTCATGGAGGGTC 59.016 55.000 0.00 0.00 0.00 4.46
78 79 1.352352 CTTTGGTGAGTCATGGAGGGT 59.648 52.381 0.00 0.00 0.00 4.34
79 80 1.352352 ACTTTGGTGAGTCATGGAGGG 59.648 52.381 0.00 0.00 0.00 4.30
80 81 2.867109 ACTTTGGTGAGTCATGGAGG 57.133 50.000 0.00 0.00 0.00 4.30
81 82 4.022849 GGAAAACTTTGGTGAGTCATGGAG 60.023 45.833 0.00 0.00 0.00 3.86
82 83 3.888930 GGAAAACTTTGGTGAGTCATGGA 59.111 43.478 0.00 0.00 0.00 3.41
83 84 3.891366 AGGAAAACTTTGGTGAGTCATGG 59.109 43.478 0.00 0.00 0.00 3.66
84 85 4.261741 CCAGGAAAACTTTGGTGAGTCATG 60.262 45.833 0.00 0.00 0.00 3.07
85 86 3.891366 CCAGGAAAACTTTGGTGAGTCAT 59.109 43.478 0.00 0.00 0.00 3.06
86 87 3.287222 CCAGGAAAACTTTGGTGAGTCA 58.713 45.455 0.00 0.00 0.00 3.41
87 88 3.288092 ACCAGGAAAACTTTGGTGAGTC 58.712 45.455 0.00 0.00 43.32 3.36
88 89 3.382083 ACCAGGAAAACTTTGGTGAGT 57.618 42.857 0.00 0.00 43.32 3.41
89 90 5.845391 TTAACCAGGAAAACTTTGGTGAG 57.155 39.130 0.00 0.00 44.15 3.51
90 91 5.009210 CGATTAACCAGGAAAACTTTGGTGA 59.991 40.000 0.00 0.00 44.15 4.02
91 92 5.219633 CGATTAACCAGGAAAACTTTGGTG 58.780 41.667 0.00 0.00 44.15 4.17
92 93 4.261867 GCGATTAACCAGGAAAACTTTGGT 60.262 41.667 0.00 0.00 46.78 3.67
93 94 4.234574 GCGATTAACCAGGAAAACTTTGG 58.765 43.478 0.00 0.00 37.98 3.28
94 95 4.234574 GGCGATTAACCAGGAAAACTTTG 58.765 43.478 0.00 0.00 0.00 2.77
104 105 2.900337 GGGGCGGCGATTAACCAG 60.900 66.667 12.98 0.00 0.00 4.00
106 107 1.388837 ATTTGGGGCGGCGATTAACC 61.389 55.000 12.98 0.30 0.00 2.85
121 122 0.734889 GTGCTCCCGGTGATCATTTG 59.265 55.000 0.00 0.00 0.00 2.32
218 223 2.359975 GGGGAGTTGCCGAACAGG 60.360 66.667 0.00 0.00 44.97 4.00
219 224 1.672356 CTGGGGAGTTGCCGAACAG 60.672 63.158 0.00 0.00 37.63 3.16
220 225 2.429930 CTGGGGAGTTGCCGAACA 59.570 61.111 0.00 0.00 37.63 3.18
221 226 3.056328 GCTGGGGAGTTGCCGAAC 61.056 66.667 0.00 0.00 37.63 3.95
222 227 4.697756 CGCTGGGGAGTTGCCGAA 62.698 66.667 0.00 0.00 37.63 4.30
227 232 3.058160 CTTGGCGCTGGGGAGTTG 61.058 66.667 7.64 0.00 0.00 3.16
228 233 2.351924 TTTCTTGGCGCTGGGGAGTT 62.352 55.000 7.64 0.00 0.00 3.01
229 234 2.142292 ATTTCTTGGCGCTGGGGAGT 62.142 55.000 7.64 0.00 0.00 3.85
230 235 1.379044 ATTTCTTGGCGCTGGGGAG 60.379 57.895 7.64 0.00 0.00 4.30
231 236 1.378514 GATTTCTTGGCGCTGGGGA 60.379 57.895 7.64 0.00 0.00 4.81
232 237 2.418083 GGATTTCTTGGCGCTGGGG 61.418 63.158 7.64 0.00 0.00 4.96
233 238 0.967380 AAGGATTTCTTGGCGCTGGG 60.967 55.000 7.64 0.00 33.76 4.45
234 239 1.750193 TAAGGATTTCTTGGCGCTGG 58.250 50.000 7.64 0.00 36.93 4.85
235 240 3.848272 TTTAAGGATTTCTTGGCGCTG 57.152 42.857 7.64 0.00 36.93 5.18
236 241 4.096984 CAGATTTAAGGATTTCTTGGCGCT 59.903 41.667 7.64 0.00 36.93 5.92
237 242 4.354587 CAGATTTAAGGATTTCTTGGCGC 58.645 43.478 0.00 0.00 36.93 6.53
238 243 4.734695 GCCAGATTTAAGGATTTCTTGGCG 60.735 45.833 0.00 0.00 36.93 5.69
239 244 4.403752 AGCCAGATTTAAGGATTTCTTGGC 59.596 41.667 3.60 3.60 36.93 4.52
240 245 6.406288 GGAAGCCAGATTTAAGGATTTCTTGG 60.406 42.308 0.00 0.00 32.89 3.61
241 246 6.406288 GGGAAGCCAGATTTAAGGATTTCTTG 60.406 42.308 0.00 0.00 32.89 3.02
242 247 5.658634 GGGAAGCCAGATTTAAGGATTTCTT 59.341 40.000 0.00 0.00 32.89 2.52
243 248 5.204292 GGGAAGCCAGATTTAAGGATTTCT 58.796 41.667 0.00 0.00 32.89 2.52
244 249 4.036852 CGGGAAGCCAGATTTAAGGATTTC 59.963 45.833 0.00 0.00 32.89 2.17
245 250 3.954258 CGGGAAGCCAGATTTAAGGATTT 59.046 43.478 0.00 0.00 32.89 2.17
246 251 3.202151 TCGGGAAGCCAGATTTAAGGATT 59.798 43.478 0.00 0.00 35.98 3.01
247 252 2.777692 TCGGGAAGCCAGATTTAAGGAT 59.222 45.455 0.00 0.00 0.00 3.24
248 253 2.193127 TCGGGAAGCCAGATTTAAGGA 58.807 47.619 0.00 0.00 0.00 3.36
249 254 2.710096 TCGGGAAGCCAGATTTAAGG 57.290 50.000 0.00 0.00 0.00 2.69
250 255 3.812053 CAGATCGGGAAGCCAGATTTAAG 59.188 47.826 0.80 0.00 38.47 1.85
251 256 3.433598 CCAGATCGGGAAGCCAGATTTAA 60.434 47.826 5.91 0.00 38.47 1.52
252 257 2.104792 CCAGATCGGGAAGCCAGATTTA 59.895 50.000 5.91 0.00 38.47 1.40
253 258 1.133976 CCAGATCGGGAAGCCAGATTT 60.134 52.381 5.91 0.00 38.47 2.17
254 259 0.471617 CCAGATCGGGAAGCCAGATT 59.528 55.000 5.91 0.00 38.47 2.40
255 260 2.049627 GCCAGATCGGGAAGCCAGAT 62.050 60.000 16.86 0.00 40.89 2.90
256 261 2.735772 GCCAGATCGGGAAGCCAGA 61.736 63.158 16.86 0.00 34.06 3.86
257 262 2.203126 GCCAGATCGGGAAGCCAG 60.203 66.667 16.86 0.00 34.06 4.85
258 263 2.257409 GAAGCCAGATCGGGAAGCCA 62.257 60.000 16.86 0.00 34.06 4.75
259 264 1.524849 GAAGCCAGATCGGGAAGCC 60.525 63.158 16.86 0.00 34.06 4.35
260 265 1.524849 GGAAGCCAGATCGGGAAGC 60.525 63.158 16.86 0.00 34.06 3.86
261 266 1.907739 TGGAAGCCAGATCGGGAAG 59.092 57.895 16.86 0.00 34.06 3.46
262 267 4.145436 TGGAAGCCAGATCGGGAA 57.855 55.556 16.86 0.00 34.06 3.97
274 279 2.169832 TTTCGTCTGGAAGCTGGAAG 57.830 50.000 0.00 0.00 35.70 3.46
275 280 2.631160 TTTTCGTCTGGAAGCTGGAA 57.369 45.000 0.00 0.00 35.70 3.53
276 281 2.859165 ATTTTCGTCTGGAAGCTGGA 57.141 45.000 0.00 0.00 35.70 3.86
277 282 4.142600 CCTTAATTTTCGTCTGGAAGCTGG 60.143 45.833 0.00 0.00 35.70 4.85
278 283 4.695455 TCCTTAATTTTCGTCTGGAAGCTG 59.305 41.667 0.00 0.00 35.70 4.24
279 284 4.906618 TCCTTAATTTTCGTCTGGAAGCT 58.093 39.130 0.00 0.00 35.70 3.74
280 285 5.354234 TGATCCTTAATTTTCGTCTGGAAGC 59.646 40.000 0.00 0.00 35.70 3.86
281 286 6.037610 CCTGATCCTTAATTTTCGTCTGGAAG 59.962 42.308 0.00 0.00 35.70 3.46
282 287 5.880332 CCTGATCCTTAATTTTCGTCTGGAA 59.120 40.000 0.00 0.00 0.00 3.53
283 288 5.188948 TCCTGATCCTTAATTTTCGTCTGGA 59.811 40.000 0.00 0.00 32.25 3.86
284 289 5.428253 TCCTGATCCTTAATTTTCGTCTGG 58.572 41.667 0.00 0.00 0.00 3.86
285 290 6.985188 TTCCTGATCCTTAATTTTCGTCTG 57.015 37.500 0.00 0.00 0.00 3.51
286 291 7.094334 GGTTTTCCTGATCCTTAATTTTCGTCT 60.094 37.037 0.00 0.00 36.94 4.18
287 292 7.027760 GGTTTTCCTGATCCTTAATTTTCGTC 58.972 38.462 0.00 0.00 36.94 4.20
288 293 6.349033 CGGTTTTCCTGATCCTTAATTTTCGT 60.349 38.462 0.00 0.00 37.95 3.85
289 294 6.027749 CGGTTTTCCTGATCCTTAATTTTCG 58.972 40.000 0.00 0.00 37.95 3.46
290 295 6.920817 ACGGTTTTCCTGATCCTTAATTTTC 58.079 36.000 0.00 0.00 37.95 2.29
291 296 6.911250 ACGGTTTTCCTGATCCTTAATTTT 57.089 33.333 0.00 0.00 37.95 1.82
292 297 6.349033 CGAACGGTTTTCCTGATCCTTAATTT 60.349 38.462 0.00 0.00 37.95 1.82
293 298 5.123344 CGAACGGTTTTCCTGATCCTTAATT 59.877 40.000 0.00 0.00 37.95 1.40
294 299 4.634443 CGAACGGTTTTCCTGATCCTTAAT 59.366 41.667 0.00 0.00 37.95 1.40
295 300 3.998341 CGAACGGTTTTCCTGATCCTTAA 59.002 43.478 0.00 0.00 37.95 1.85
296 301 3.592059 CGAACGGTTTTCCTGATCCTTA 58.408 45.455 0.00 0.00 37.95 2.69
297 302 2.423577 CGAACGGTTTTCCTGATCCTT 58.576 47.619 0.00 0.00 37.95 3.36
298 303 1.338769 CCGAACGGTTTTCCTGATCCT 60.339 52.381 4.99 0.00 37.95 3.24
299 304 1.084289 CCGAACGGTTTTCCTGATCC 58.916 55.000 4.99 0.00 37.95 3.36
300 305 0.446616 GCCGAACGGTTTTCCTGATC 59.553 55.000 14.63 0.00 37.95 2.92
301 306 0.250553 TGCCGAACGGTTTTCCTGAT 60.251 50.000 14.63 0.00 37.95 2.90
302 307 1.146485 TGCCGAACGGTTTTCCTGA 59.854 52.632 14.63 0.00 37.95 3.86
303 308 1.164041 AGTGCCGAACGGTTTTCCTG 61.164 55.000 14.63 0.00 37.95 3.86
304 309 0.393820 TAGTGCCGAACGGTTTTCCT 59.606 50.000 14.63 6.37 37.95 3.36
305 310 0.794473 CTAGTGCCGAACGGTTTTCC 59.206 55.000 14.63 0.00 37.65 3.13
306 311 1.787012 TCTAGTGCCGAACGGTTTTC 58.213 50.000 14.63 0.00 37.65 2.29
307 312 1.869132 GTTCTAGTGCCGAACGGTTTT 59.131 47.619 14.63 3.46 37.65 2.43
308 313 1.069668 AGTTCTAGTGCCGAACGGTTT 59.930 47.619 14.63 3.79 44.08 3.27
309 314 0.677842 AGTTCTAGTGCCGAACGGTT 59.322 50.000 14.63 0.00 44.08 4.44
310 315 0.243095 GAGTTCTAGTGCCGAACGGT 59.757 55.000 14.63 0.00 44.08 4.83
311 316 0.458025 GGAGTTCTAGTGCCGAACGG 60.458 60.000 9.00 9.00 44.08 4.44
312 317 0.458025 GGGAGTTCTAGTGCCGAACG 60.458 60.000 0.00 0.00 44.08 3.95
313 318 0.108281 GGGGAGTTCTAGTGCCGAAC 60.108 60.000 0.00 0.00 40.72 3.95
314 319 1.601419 CGGGGAGTTCTAGTGCCGAA 61.601 60.000 0.00 0.00 28.45 4.30
315 320 2.050350 CGGGGAGTTCTAGTGCCGA 61.050 63.158 0.00 0.00 28.45 5.54
316 321 1.392710 ATCGGGGAGTTCTAGTGCCG 61.393 60.000 0.00 0.00 28.45 5.69
317 322 0.389757 GATCGGGGAGTTCTAGTGCC 59.610 60.000 0.00 0.00 0.00 5.01
318 323 0.389757 GGATCGGGGAGTTCTAGTGC 59.610 60.000 0.00 0.00 0.00 4.40
319 324 1.683917 CTGGATCGGGGAGTTCTAGTG 59.316 57.143 0.00 0.00 0.00 2.74
320 325 1.288335 ACTGGATCGGGGAGTTCTAGT 59.712 52.381 0.00 0.00 36.12 2.57
321 326 1.957877 GACTGGATCGGGGAGTTCTAG 59.042 57.143 0.00 0.00 34.51 2.43
322 327 2.068834 GACTGGATCGGGGAGTTCTA 57.931 55.000 0.00 0.00 0.00 2.10
323 328 2.903404 GACTGGATCGGGGAGTTCT 58.097 57.895 0.00 0.00 0.00 3.01
333 338 1.078759 CCAACACGAGCGACTGGATC 61.079 60.000 0.00 0.00 0.00 3.36
334 339 1.079819 CCAACACGAGCGACTGGAT 60.080 57.895 0.00 0.00 0.00 3.41
335 340 2.338620 CCAACACGAGCGACTGGA 59.661 61.111 0.00 0.00 0.00 3.86
336 341 2.738521 CCCAACACGAGCGACTGG 60.739 66.667 0.00 0.18 0.00 4.00
337 342 3.414700 GCCCAACACGAGCGACTG 61.415 66.667 0.00 0.00 0.00 3.51
338 343 3.165160 AAGCCCAACACGAGCGACT 62.165 57.895 0.00 0.00 0.00 4.18
339 344 2.665185 AAGCCCAACACGAGCGAC 60.665 61.111 0.00 0.00 0.00 5.19
340 345 1.529152 TAGAAGCCCAACACGAGCGA 61.529 55.000 0.00 0.00 0.00 4.93
341 346 1.078759 CTAGAAGCCCAACACGAGCG 61.079 60.000 0.00 0.00 0.00 5.03
342 347 1.362406 GCTAGAAGCCCAACACGAGC 61.362 60.000 0.00 0.00 34.48 5.03
343 348 1.078759 CGCTAGAAGCCCAACACGAG 61.079 60.000 0.00 0.00 38.18 4.18
344 349 1.080093 CGCTAGAAGCCCAACACGA 60.080 57.895 0.00 0.00 38.18 4.35
345 350 2.100631 CCGCTAGAAGCCCAACACG 61.101 63.158 0.00 0.00 38.18 4.49
346 351 2.399356 GCCGCTAGAAGCCCAACAC 61.399 63.158 0.00 0.00 38.18 3.32
347 352 2.046314 GCCGCTAGAAGCCCAACA 60.046 61.111 0.00 0.00 38.18 3.33
348 353 2.824489 GGCCGCTAGAAGCCCAAC 60.824 66.667 11.46 0.00 43.76 3.77
353 358 2.029815 GGCTAGGCCGCTAGAAGC 59.970 66.667 4.61 0.71 39.62 3.86
363 368 2.575805 ATGAGCTTAATGGGCTAGGC 57.424 50.000 8.00 8.00 40.40 3.93
364 369 4.518211 CAGAAATGAGCTTAATGGGCTAGG 59.482 45.833 0.00 0.00 40.40 3.02
365 370 4.518211 CCAGAAATGAGCTTAATGGGCTAG 59.482 45.833 0.00 0.00 40.40 3.42
366 371 4.464008 CCAGAAATGAGCTTAATGGGCTA 58.536 43.478 0.00 0.00 40.40 3.93
367 372 3.294214 CCAGAAATGAGCTTAATGGGCT 58.706 45.455 0.00 0.00 43.26 5.19
368 373 2.223900 GCCAGAAATGAGCTTAATGGGC 60.224 50.000 0.00 0.00 0.00 5.36
369 374 2.363359 GGCCAGAAATGAGCTTAATGGG 59.637 50.000 0.00 0.00 0.00 4.00
370 375 3.067742 CAGGCCAGAAATGAGCTTAATGG 59.932 47.826 5.01 0.00 0.00 3.16
371 376 3.067742 CCAGGCCAGAAATGAGCTTAATG 59.932 47.826 5.01 0.00 0.00 1.90
372 377 3.294214 CCAGGCCAGAAATGAGCTTAAT 58.706 45.455 5.01 0.00 0.00 1.40
373 378 2.041620 ACCAGGCCAGAAATGAGCTTAA 59.958 45.455 5.01 0.00 0.00 1.85
374 379 1.635487 ACCAGGCCAGAAATGAGCTTA 59.365 47.619 5.01 0.00 0.00 3.09
375 380 0.407139 ACCAGGCCAGAAATGAGCTT 59.593 50.000 5.01 0.00 0.00 3.74
376 381 1.211457 CTACCAGGCCAGAAATGAGCT 59.789 52.381 5.01 0.00 0.00 4.09
377 382 1.673168 CTACCAGGCCAGAAATGAGC 58.327 55.000 5.01 0.00 0.00 4.26
378 383 1.133976 CCCTACCAGGCCAGAAATGAG 60.134 57.143 5.01 0.00 32.73 2.90
379 384 0.918983 CCCTACCAGGCCAGAAATGA 59.081 55.000 5.01 0.00 32.73 2.57
380 385 0.918983 TCCCTACCAGGCCAGAAATG 59.081 55.000 5.01 0.00 32.73 2.32
381 386 0.919710 GTCCCTACCAGGCCAGAAAT 59.080 55.000 5.01 0.00 32.73 2.17
382 387 1.550130 CGTCCCTACCAGGCCAGAAA 61.550 60.000 5.01 0.00 32.73 2.52
383 388 1.987855 CGTCCCTACCAGGCCAGAA 60.988 63.158 5.01 0.00 32.73 3.02
384 389 2.363795 CGTCCCTACCAGGCCAGA 60.364 66.667 5.01 0.00 32.73 3.86
385 390 1.987855 TTCGTCCCTACCAGGCCAG 60.988 63.158 5.01 0.00 32.73 4.85
386 391 2.120940 TTCGTCCCTACCAGGCCA 59.879 61.111 5.01 0.00 32.73 5.36
387 392 2.582978 GTTCGTCCCTACCAGGCC 59.417 66.667 0.00 0.00 32.73 5.19
388 393 2.582978 GGTTCGTCCCTACCAGGC 59.417 66.667 0.00 0.00 32.73 4.85
389 394 1.538687 AACGGTTCGTCCCTACCAGG 61.539 60.000 0.00 0.00 39.99 4.45
390 395 0.319405 AAACGGTTCGTCCCTACCAG 59.681 55.000 0.00 0.00 39.99 4.00
391 396 0.318120 GAAACGGTTCGTCCCTACCA 59.682 55.000 0.00 0.00 39.99 3.25
392 397 3.128259 GAAACGGTTCGTCCCTACC 57.872 57.895 0.00 0.00 39.99 3.18
402 407 3.847105 GCGATGAAAGAAACGAAACGGTT 60.847 43.478 0.00 0.00 40.41 4.44
403 408 2.349155 GCGATGAAAGAAACGAAACGGT 60.349 45.455 0.00 0.00 0.00 4.83
404 409 2.230864 GCGATGAAAGAAACGAAACGG 58.769 47.619 0.00 0.00 0.00 4.44
405 410 2.645647 GTGCGATGAAAGAAACGAAACG 59.354 45.455 0.00 0.00 0.00 3.60
406 411 2.645647 CGTGCGATGAAAGAAACGAAAC 59.354 45.455 0.00 0.00 33.03 2.78
407 412 2.540516 TCGTGCGATGAAAGAAACGAAA 59.459 40.909 0.00 0.00 37.14 3.46
408 413 2.128821 TCGTGCGATGAAAGAAACGAA 58.871 42.857 0.00 0.00 37.14 3.85
409 414 1.773410 TCGTGCGATGAAAGAAACGA 58.227 45.000 0.00 0.00 37.68 3.85
410 415 2.222624 GTTCGTGCGATGAAAGAAACG 58.777 47.619 0.00 0.00 0.00 3.60
411 416 2.571206 GGTTCGTGCGATGAAAGAAAC 58.429 47.619 0.00 0.00 0.00 2.78
412 417 1.193650 CGGTTCGTGCGATGAAAGAAA 59.806 47.619 0.00 0.00 0.00 2.52
413 418 0.787787 CGGTTCGTGCGATGAAAGAA 59.212 50.000 0.00 0.00 0.00 2.52
414 419 0.319211 ACGGTTCGTGCGATGAAAGA 60.319 50.000 0.00 0.00 39.18 2.52
415 420 0.511221 AACGGTTCGTGCGATGAAAG 59.489 50.000 0.00 0.00 39.99 2.62
416 421 0.938713 AAACGGTTCGTGCGATGAAA 59.061 45.000 0.00 0.00 39.99 2.69
417 422 0.938713 AAAACGGTTCGTGCGATGAA 59.061 45.000 0.00 0.00 39.99 2.57
418 423 0.509499 GAAAACGGTTCGTGCGATGA 59.491 50.000 0.00 0.00 39.99 2.92
419 424 0.511221 AGAAAACGGTTCGTGCGATG 59.489 50.000 0.00 0.00 39.99 3.84
420 425 1.193874 GAAGAAAACGGTTCGTGCGAT 59.806 47.619 0.00 0.00 39.99 4.58
421 426 0.578211 GAAGAAAACGGTTCGTGCGA 59.422 50.000 0.00 0.00 39.99 5.10
422 427 0.383860 GGAAGAAAACGGTTCGTGCG 60.384 55.000 0.00 0.00 39.99 5.34
423 428 0.658897 TGGAAGAAAACGGTTCGTGC 59.341 50.000 0.00 0.00 39.99 5.34
424 429 1.937899 AGTGGAAGAAAACGGTTCGTG 59.062 47.619 0.00 0.00 39.99 4.35
425 430 2.320745 AGTGGAAGAAAACGGTTCGT 57.679 45.000 0.00 0.00 43.97 3.85
426 431 2.348218 CGAAGTGGAAGAAAACGGTTCG 60.348 50.000 0.00 0.00 0.00 3.95
427 432 2.601504 GCGAAGTGGAAGAAAACGGTTC 60.602 50.000 0.00 0.00 0.00 3.62
428 433 1.332686 GCGAAGTGGAAGAAAACGGTT 59.667 47.619 0.00 0.00 0.00 4.44
429 434 0.942252 GCGAAGTGGAAGAAAACGGT 59.058 50.000 0.00 0.00 0.00 4.83
430 435 0.110823 CGCGAAGTGGAAGAAAACGG 60.111 55.000 0.00 0.00 0.00 4.44
431 436 3.345087 CGCGAAGTGGAAGAAAACG 57.655 52.632 0.00 0.00 0.00 3.60
443 448 4.749310 AGAGCTGCCACCGCGAAG 62.749 66.667 8.23 0.00 38.08 3.79
444 449 4.742201 GAGAGCTGCCACCGCGAA 62.742 66.667 8.23 0.00 38.08 4.70
447 452 2.507110 TTACAGAGAGCTGCCACCGC 62.507 60.000 0.00 0.00 46.26 5.68
448 453 0.037326 TTTACAGAGAGCTGCCACCG 60.037 55.000 0.00 0.00 46.26 4.94
449 454 2.409948 ATTTACAGAGAGCTGCCACC 57.590 50.000 0.00 0.00 46.26 4.61
450 455 4.938226 ACTTTATTTACAGAGAGCTGCCAC 59.062 41.667 0.00 0.00 46.26 5.01
451 456 5.165961 ACTTTATTTACAGAGAGCTGCCA 57.834 39.130 0.00 0.00 46.26 4.92
452 457 5.178797 TGACTTTATTTACAGAGAGCTGCC 58.821 41.667 0.00 0.00 46.26 4.85
453 458 6.370166 AGTTGACTTTATTTACAGAGAGCTGC 59.630 38.462 0.00 0.00 46.26 5.25
455 460 7.100409 GGAGTTGACTTTATTTACAGAGAGCT 58.900 38.462 0.00 0.00 0.00 4.09
456 461 6.874134 TGGAGTTGACTTTATTTACAGAGAGC 59.126 38.462 0.00 0.00 0.00 4.09
457 462 7.547370 CCTGGAGTTGACTTTATTTACAGAGAG 59.453 40.741 0.00 0.00 0.00 3.20
458 463 7.234782 TCCTGGAGTTGACTTTATTTACAGAGA 59.765 37.037 0.00 0.00 0.00 3.10
459 464 7.386851 TCCTGGAGTTGACTTTATTTACAGAG 58.613 38.462 0.00 0.00 0.00 3.35
460 465 7.311092 TCCTGGAGTTGACTTTATTTACAGA 57.689 36.000 0.00 0.00 0.00 3.41
461 466 8.567285 AATCCTGGAGTTGACTTTATTTACAG 57.433 34.615 1.52 0.00 0.00 2.74
462 467 8.934023 AAATCCTGGAGTTGACTTTATTTACA 57.066 30.769 8.83 0.00 0.00 2.41
463 468 8.459635 GGAAATCCTGGAGTTGACTTTATTTAC 58.540 37.037 14.90 0.00 0.00 2.01
464 469 7.335924 CGGAAATCCTGGAGTTGACTTTATTTA 59.664 37.037 14.90 0.00 0.00 1.40
465 470 6.151144 CGGAAATCCTGGAGTTGACTTTATTT 59.849 38.462 14.90 0.00 0.00 1.40
466 471 5.648092 CGGAAATCCTGGAGTTGACTTTATT 59.352 40.000 14.90 0.00 0.00 1.40
467 472 5.045869 TCGGAAATCCTGGAGTTGACTTTAT 60.046 40.000 14.90 0.00 0.00 1.40
468 473 4.285003 TCGGAAATCCTGGAGTTGACTTTA 59.715 41.667 14.90 0.00 0.00 1.85
469 474 3.072476 TCGGAAATCCTGGAGTTGACTTT 59.928 43.478 14.90 2.07 0.00 2.66
470 475 2.637872 TCGGAAATCCTGGAGTTGACTT 59.362 45.455 14.90 0.00 0.00 3.01
471 476 2.257207 TCGGAAATCCTGGAGTTGACT 58.743 47.619 14.90 0.00 0.00 3.41
472 477 2.762535 TCGGAAATCCTGGAGTTGAC 57.237 50.000 14.90 6.14 0.00 3.18
473 478 3.519510 AGAATCGGAAATCCTGGAGTTGA 59.480 43.478 14.90 6.74 0.00 3.18
474 479 3.624861 CAGAATCGGAAATCCTGGAGTTG 59.375 47.826 14.90 0.84 0.00 3.16
475 480 3.370953 CCAGAATCGGAAATCCTGGAGTT 60.371 47.826 9.45 9.45 45.35 3.01
476 481 2.171448 CCAGAATCGGAAATCCTGGAGT 59.829 50.000 1.52 0.00 45.35 3.85
477 482 2.486191 CCCAGAATCGGAAATCCTGGAG 60.486 54.545 15.33 0.00 45.35 3.86
478 483 1.490490 CCCAGAATCGGAAATCCTGGA 59.510 52.381 15.33 0.00 45.35 3.86
479 484 1.490490 TCCCAGAATCGGAAATCCTGG 59.510 52.381 0.00 0.00 42.92 4.45
480 485 3.406764 GATCCCAGAATCGGAAATCCTG 58.593 50.000 0.00 0.00 31.75 3.86
481 486 2.037772 CGATCCCAGAATCGGAAATCCT 59.962 50.000 0.00 0.00 43.70 3.24
482 487 2.417719 CGATCCCAGAATCGGAAATCC 58.582 52.381 0.00 0.00 43.70 3.01
483 488 1.801178 GCGATCCCAGAATCGGAAATC 59.199 52.381 8.20 0.00 46.66 2.17
484 489 1.543429 GGCGATCCCAGAATCGGAAAT 60.543 52.381 8.20 0.00 46.66 2.17
485 490 0.179056 GGCGATCCCAGAATCGGAAA 60.179 55.000 8.20 0.00 46.66 3.13
486 491 1.445942 GGCGATCCCAGAATCGGAA 59.554 57.895 8.20 0.00 46.66 4.30
487 492 2.856628 CGGCGATCCCAGAATCGGA 61.857 63.158 0.00 0.00 46.66 4.55
488 493 2.356313 CGGCGATCCCAGAATCGG 60.356 66.667 0.00 0.00 46.66 4.18
490 495 0.938008 GTTTCGGCGATCCCAGAATC 59.062 55.000 11.76 0.00 0.00 2.52
491 496 0.463833 GGTTTCGGCGATCCCAGAAT 60.464 55.000 11.76 0.00 0.00 2.40
492 497 1.078708 GGTTTCGGCGATCCCAGAA 60.079 57.895 11.76 0.00 0.00 3.02
493 498 2.582436 GGTTTCGGCGATCCCAGA 59.418 61.111 11.76 0.00 0.00 3.86
494 499 2.890474 CGGTTTCGGCGATCCCAG 60.890 66.667 11.76 6.62 0.00 4.45
522 527 2.746269 AGCAGCGTCTACGTACAAAAA 58.254 42.857 4.24 0.00 42.22 1.94
523 528 2.427232 AGCAGCGTCTACGTACAAAA 57.573 45.000 4.24 0.00 42.22 2.44
524 529 2.427232 AAGCAGCGTCTACGTACAAA 57.573 45.000 4.24 0.00 42.22 2.83
525 530 2.055838 CAAAGCAGCGTCTACGTACAA 58.944 47.619 4.24 0.00 42.22 2.41
526 531 1.267533 TCAAAGCAGCGTCTACGTACA 59.732 47.619 4.24 0.00 42.22 2.90
527 532 1.973138 TCAAAGCAGCGTCTACGTAC 58.027 50.000 4.24 0.00 42.22 3.67
528 533 2.479049 GGATCAAAGCAGCGTCTACGTA 60.479 50.000 4.24 0.00 42.22 3.57
529 534 1.630148 GATCAAAGCAGCGTCTACGT 58.370 50.000 4.24 0.00 42.22 3.57
530 535 0.924090 GGATCAAAGCAGCGTCTACG 59.076 55.000 0.00 0.00 43.27 3.51
531 536 0.924090 CGGATCAAAGCAGCGTCTAC 59.076 55.000 0.00 0.00 0.00 2.59
532 537 0.179111 CCGGATCAAAGCAGCGTCTA 60.179 55.000 0.00 0.00 0.00 2.59
533 538 1.448540 CCGGATCAAAGCAGCGTCT 60.449 57.895 0.00 0.00 0.00 4.18
534 539 2.464459 CCCGGATCAAAGCAGCGTC 61.464 63.158 0.73 0.00 0.00 5.19
535 540 2.436646 CCCGGATCAAAGCAGCGT 60.437 61.111 0.73 0.00 0.00 5.07
536 541 1.709147 CTTCCCGGATCAAAGCAGCG 61.709 60.000 0.73 0.00 0.00 5.18
537 542 0.678048 ACTTCCCGGATCAAAGCAGC 60.678 55.000 0.73 0.00 0.00 5.25
538 543 1.339055 TGACTTCCCGGATCAAAGCAG 60.339 52.381 0.73 0.00 0.00 4.24
539 544 0.690192 TGACTTCCCGGATCAAAGCA 59.310 50.000 0.73 1.54 0.00 3.91
540 545 1.373570 CTGACTTCCCGGATCAAAGC 58.626 55.000 0.73 0.00 0.00 3.51
541 546 1.065854 AGCTGACTTCCCGGATCAAAG 60.066 52.381 0.73 3.54 0.00 2.77
542 547 0.984230 AGCTGACTTCCCGGATCAAA 59.016 50.000 0.73 0.00 0.00 2.69
543 548 0.984230 AAGCTGACTTCCCGGATCAA 59.016 50.000 0.73 0.00 0.00 2.57
544 549 0.537188 GAAGCTGACTTCCCGGATCA 59.463 55.000 0.73 0.00 45.60 2.92
545 550 3.371087 GAAGCTGACTTCCCGGATC 57.629 57.895 0.73 0.00 45.60 3.36
553 558 1.682257 GGCTCCAGGAAGCTGACTT 59.318 57.895 9.85 0.00 42.13 3.01
554 559 3.397906 GGCTCCAGGAAGCTGACT 58.602 61.111 9.85 0.00 42.13 3.41
557 562 4.479993 CCCGGCTCCAGGAAGCTG 62.480 72.222 0.00 11.09 46.30 4.24
577 582 4.400961 AGCAGAGCTGGCCCGAAC 62.401 66.667 0.00 0.00 37.57 3.95
578 583 4.087892 GAGCAGAGCTGGCCCGAA 62.088 66.667 0.00 0.00 39.88 4.30
584 589 3.729965 AATCCGCGAGCAGAGCTGG 62.730 63.158 8.23 0.00 39.88 4.85
585 590 2.202851 AATCCGCGAGCAGAGCTG 60.203 61.111 8.23 0.00 39.88 4.24
586 591 2.105930 GAATCCGCGAGCAGAGCT 59.894 61.111 8.23 0.00 43.88 4.09
587 592 3.326210 CGAATCCGCGAGCAGAGC 61.326 66.667 8.23 0.00 0.00 4.09
597 602 3.264897 CCAGCTTCCGCGAATCCG 61.265 66.667 8.23 0.00 42.32 4.18
598 603 1.432270 CTTCCAGCTTCCGCGAATCC 61.432 60.000 8.23 0.00 42.32 3.01
599 604 2.009888 CTTCCAGCTTCCGCGAATC 58.990 57.895 8.23 0.00 42.32 2.52
600 605 2.109126 GCTTCCAGCTTCCGCGAAT 61.109 57.895 8.23 0.00 42.32 3.34
601 606 2.742372 GCTTCCAGCTTCCGCGAA 60.742 61.111 8.23 0.00 42.32 4.70
618 623 3.997064 CTGTTCGGGAGCTCGCCAG 62.997 68.421 23.61 19.88 0.00 4.85
619 624 4.069232 CTGTTCGGGAGCTCGCCA 62.069 66.667 23.61 15.08 0.00 5.69
620 625 4.821589 CCTGTTCGGGAGCTCGCC 62.822 72.222 23.61 16.62 0.00 5.54
622 627 4.821589 GGCCTGTTCGGGAGCTCG 62.822 72.222 7.83 0.00 0.00 5.03
623 628 4.475135 GGGCCTGTTCGGGAGCTC 62.475 72.222 4.71 4.71 0.00 4.09
625 630 4.785453 CAGGGCCTGTTCGGGAGC 62.785 72.222 25.74 0.00 0.00 4.70
626 631 3.003173 TCAGGGCCTGTTCGGGAG 61.003 66.667 31.60 5.09 32.61 4.30
627 632 2.822643 ATCTCAGGGCCTGTTCGGGA 62.823 60.000 31.60 21.23 32.61 5.14
628 633 2.317149 GATCTCAGGGCCTGTTCGGG 62.317 65.000 31.60 17.31 32.61 5.14
629 634 1.144936 GATCTCAGGGCCTGTTCGG 59.855 63.158 31.60 19.52 32.61 4.30
630 635 0.539051 AAGATCTCAGGGCCTGTTCG 59.461 55.000 31.60 20.68 32.61 3.95
631 636 1.556911 TCAAGATCTCAGGGCCTGTTC 59.443 52.381 31.60 24.46 32.61 3.18
632 637 1.661463 TCAAGATCTCAGGGCCTGTT 58.339 50.000 31.60 16.41 32.61 3.16
633 638 1.661463 TTCAAGATCTCAGGGCCTGT 58.339 50.000 31.60 14.41 32.61 4.00
634 639 2.795231 TTTCAAGATCTCAGGGCCTG 57.205 50.000 28.01 28.01 0.00 4.85
635 640 3.814504 TTTTTCAAGATCTCAGGGCCT 57.185 42.857 0.00 0.00 0.00 5.19
686 691 2.095843 GGCGACGTGTTGCGATTC 59.904 61.111 0.00 0.00 44.77 2.52
689 694 4.595538 AAGGGCGACGTGTTGCGA 62.596 61.111 0.00 0.00 44.77 5.10
692 697 0.940519 TACGAAAGGGCGACGTGTTG 60.941 55.000 0.00 0.00 40.40 3.33
707 712 3.993376 GGCGCATCCAACGGTACGA 62.993 63.158 10.83 0.00 46.15 3.43
732 739 2.629050 AATGATCGAGACGGCGGGTG 62.629 60.000 13.24 0.00 0.00 4.61
733 740 2.423898 AATGATCGAGACGGCGGGT 61.424 57.895 13.24 0.00 0.00 5.28
736 743 1.056103 GATCAATGATCGAGACGGCG 58.944 55.000 7.55 4.80 29.12 6.46
890 901 0.740868 CTGCGGAAAATGGAGAGCGA 60.741 55.000 0.00 0.00 0.00 4.93
909 920 1.762222 AAGTGTTCGTGCGAGTGTGC 61.762 55.000 0.00 0.00 0.00 4.57
930 941 3.193267 CAGACTGAGCTCCTAGGATATGC 59.807 52.174 13.12 12.76 0.00 3.14
931 942 4.406456 ACAGACTGAGCTCCTAGGATATG 58.594 47.826 13.12 6.41 0.00 1.78
932 943 4.105537 TGACAGACTGAGCTCCTAGGATAT 59.894 45.833 13.12 3.44 0.00 1.63
956 968 3.118956 GCAAAGAGGAAGCAGCTAGTAGA 60.119 47.826 0.00 0.00 0.00 2.59
965 977 2.936919 TCAGAAGCAAAGAGGAAGCA 57.063 45.000 0.00 0.00 0.00 3.91
1125 1140 3.640000 GCCGCGTTCCCGATGATG 61.640 66.667 4.92 0.00 35.63 3.07
1233 1248 3.868200 CTTGCCGCTGGGGGAGTTT 62.868 63.158 13.07 0.00 37.48 2.66
1244 1259 1.578206 GGTGAAGACCTTCTTGCCGC 61.578 60.000 10.67 0.00 36.73 6.53
1287 1302 2.279120 GGGTCGATCGCTCAGCAG 60.279 66.667 11.09 0.00 0.00 4.24
1316 1331 2.540265 AACGAGATGGAGATGGATGC 57.460 50.000 0.00 0.00 0.00 3.91
1363 1400 3.072468 GCCATGCCATGCCACACT 61.072 61.111 0.00 0.00 0.00 3.55
1400 1442 6.578545 TCGTACGATTTATTATTACCTCACGC 59.421 38.462 15.28 0.00 0.00 5.34
1577 1637 8.904099 AACAGGATATTTATAGCTGGTACAAC 57.096 34.615 0.00 0.00 38.70 3.32
1582 1642 9.950496 CATTAGAACAGGATATTTATAGCTGGT 57.050 33.333 0.00 0.00 0.00 4.00
1648 1708 1.543614 TTGACGAAAACGACGACGAA 58.456 45.000 15.32 0.00 42.66 3.85
1656 1716 6.503616 TCATTTTCCATTTTGACGAAAACG 57.496 33.333 0.00 0.00 38.07 3.60
1680 1740 4.808414 TCGTCACTCATTTTCTCCAGAT 57.192 40.909 0.00 0.00 0.00 2.90
1687 1747 5.957976 CGATTTGTTCGTCACTCATTTTC 57.042 39.130 0.00 0.00 43.01 2.29
1708 1768 6.475076 GGAGCATTATATTATCTGACAGCTCG 59.525 42.308 0.00 0.00 44.04 5.03
1726 1786 2.990479 GAGGGACACGGGAGCATT 59.010 61.111 0.00 0.00 0.00 3.56
1727 1787 3.461773 CGAGGGACACGGGAGCAT 61.462 66.667 0.00 0.00 39.10 3.79
1740 1800 2.637025 CGTGTTGCCCAAACGAGG 59.363 61.111 0.00 0.00 42.10 4.63
1741 1801 2.637025 CCGTGTTGCCCAAACGAG 59.363 61.111 13.36 4.77 42.10 4.18
1742 1802 2.902846 CCCGTGTTGCCCAAACGA 60.903 61.111 13.36 0.00 42.10 3.85
1743 1803 4.639171 GCCCGTGTTGCCCAAACG 62.639 66.667 7.99 7.99 42.10 3.60
1744 1804 4.293648 GGCCCGTGTTGCCCAAAC 62.294 66.667 0.00 0.00 43.33 2.93
1750 1810 2.904866 TGTTCTGGCCCGTGTTGC 60.905 61.111 0.00 0.00 0.00 4.17
1751 1811 0.817634 TTCTGTTCTGGCCCGTGTTG 60.818 55.000 0.00 0.00 0.00 3.33
1752 1812 0.535102 CTTCTGTTCTGGCCCGTGTT 60.535 55.000 0.00 0.00 0.00 3.32
1753 1813 1.071471 CTTCTGTTCTGGCCCGTGT 59.929 57.895 0.00 0.00 0.00 4.49
1754 1814 0.250295 TTCTTCTGTTCTGGCCCGTG 60.250 55.000 0.00 0.00 0.00 4.94
1755 1815 0.472471 TTTCTTCTGTTCTGGCCCGT 59.528 50.000 0.00 0.00 0.00 5.28
1756 1816 0.875059 GTTTCTTCTGTTCTGGCCCG 59.125 55.000 0.00 0.00 0.00 6.13
1757 1817 1.248486 GGTTTCTTCTGTTCTGGCCC 58.752 55.000 0.00 0.00 0.00 5.80
1758 1818 1.248486 GGGTTTCTTCTGTTCTGGCC 58.752 55.000 0.00 0.00 0.00 5.36
1759 1819 1.882623 CTGGGTTTCTTCTGTTCTGGC 59.117 52.381 0.00 0.00 0.00 4.85
1760 1820 2.508526 CCTGGGTTTCTTCTGTTCTGG 58.491 52.381 0.00 0.00 0.00 3.86
1761 1821 2.508526 CCCTGGGTTTCTTCTGTTCTG 58.491 52.381 3.97 0.00 0.00 3.02
1762 1822 1.425448 CCCCTGGGTTTCTTCTGTTCT 59.575 52.381 12.71 0.00 0.00 3.01
1763 1823 1.547901 CCCCCTGGGTTTCTTCTGTTC 60.548 57.143 12.71 0.00 38.25 3.18
1764 1824 0.482887 CCCCCTGGGTTTCTTCTGTT 59.517 55.000 12.71 0.00 38.25 3.16
1765 1825 0.402861 TCCCCCTGGGTTTCTTCTGT 60.403 55.000 12.71 0.00 44.74 3.41
1766 1826 0.777446 TTCCCCCTGGGTTTCTTCTG 59.223 55.000 12.71 0.00 44.74 3.02
1767 1827 1.076438 CTTCCCCCTGGGTTTCTTCT 58.924 55.000 12.71 0.00 44.74 2.85
1772 1832 0.778083 GTTCTCTTCCCCCTGGGTTT 59.222 55.000 12.71 0.00 44.74 3.27
1798 1859 1.978455 TTCTGAACGTGGTGGTGGCT 61.978 55.000 0.00 0.00 0.00 4.75
1812 1873 3.520696 TGGATCCCTTCTTCTGTTCTGA 58.479 45.455 9.90 0.00 0.00 3.27
1841 1907 7.786030 TGATCAAAACTAAGAAGATCTCCGAT 58.214 34.615 0.00 0.00 36.82 4.18
1863 1929 6.127980 GGCGATGATGATGAAGATGAAATGAT 60.128 38.462 0.00 0.00 0.00 2.45
1875 1941 0.397941 GAAGGGGGCGATGATGATGA 59.602 55.000 0.00 0.00 0.00 2.92
1886 1952 1.074889 TCTTACAAAGGTGAAGGGGGC 59.925 52.381 0.00 0.00 0.00 5.80
1898 1964 6.038825 TCGCAACTTGAAATTCCTCTTACAAA 59.961 34.615 0.00 0.00 0.00 2.83
1989 2059 4.253685 ACAATACCGTGAAGATCCACAAG 58.746 43.478 3.48 0.59 36.89 3.16
2010 2080 9.660180 GATAGAACCCTTGAAATCCATATAGAC 57.340 37.037 0.00 0.00 0.00 2.59
2013 2083 9.621239 AGAGATAGAACCCTTGAAATCCATATA 57.379 33.333 0.00 0.00 0.00 0.86
2026 2096 4.551215 ATCACTCCAGAGATAGAACCCT 57.449 45.455 0.70 0.00 0.00 4.34
2042 2112 7.171167 CGCATCATAAGAGAGAAATCAATCACT 59.829 37.037 0.00 0.00 0.00 3.41
2201 2271 3.260632 GGGCCCTTAAATTGAACACACAT 59.739 43.478 17.04 0.00 0.00 3.21
2209 2280 0.411452 TGCCTGGGCCCTTAAATTGA 59.589 50.000 25.70 0.00 41.09 2.57
2268 2340 2.675317 CGTCAGAGGTCACAGATTTCCC 60.675 54.545 0.00 0.00 0.00 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.