Multiple sequence alignment - TraesCS1A01G374400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G374400 chr1A 100.000 2500 0 0 1 2500 549669550 549672049 0.000000e+00 4617.0
1 TraesCS1A01G374400 chr1A 96.918 292 9 0 1110 1401 549695444 549695735 8.040000e-135 490.0
2 TraesCS1A01G374400 chr1A 96.154 52 2 0 2449 2500 492803823 492803772 4.430000e-13 86.1
3 TraesCS1A01G374400 chr1D 91.049 715 46 10 784 1490 456251407 456252111 0.000000e+00 950.0
4 TraesCS1A01G374400 chr1D 86.008 779 59 19 665 1432 456202722 456203461 0.000000e+00 789.0
5 TraesCS1A01G374400 chr1D 89.200 500 32 10 967 1461 457033236 457033718 2.750000e-169 604.0
6 TraesCS1A01G374400 chr1D 83.486 545 72 13 1830 2369 456252519 456253050 2.230000e-135 492.0
7 TraesCS1A01G374400 chr1D 93.836 292 18 0 1110 1401 457044142 457044433 8.210000e-120 440.0
8 TraesCS1A01G374400 chr1D 83.369 463 56 16 220 666 456202221 456202678 2.310000e-110 409.0
9 TraesCS1A01G374400 chr1D 87.540 313 26 7 664 969 457022731 457023037 1.420000e-92 350.0
10 TraesCS1A01G374400 chr1D 91.189 227 20 0 1 227 409589423 409589197 2.420000e-80 309.0
11 TraesCS1A01G374400 chr1D 82.051 390 34 15 236 594 456223823 456224207 1.450000e-77 300.0
12 TraesCS1A01G374400 chr1D 83.088 272 40 2 396 666 457022390 457022656 2.480000e-60 243.0
13 TraesCS1A01G374400 chr1B 86.832 767 52 22 665 1416 626609879 626610611 0.000000e+00 811.0
14 TraesCS1A01G374400 chr1B 95.548 292 13 0 1110 1401 626649120 626649411 3.770000e-128 468.0
15 TraesCS1A01G374400 chr1B 83.141 433 53 9 223 635 626609383 626609815 6.530000e-101 377.0
16 TraesCS1A01G374400 chr1B 92.411 224 17 0 1 224 665265708 665265931 1.120000e-83 320.0
17 TraesCS1A01G374400 chr1B 94.545 55 3 0 1528 1582 626611617 626611671 4.430000e-13 86.1
18 TraesCS1A01G374400 chr5B 93.392 227 15 0 1 227 700034166 700033940 1.110000e-88 337.0
19 TraesCS1A01G374400 chr5B 98.000 50 1 0 2451 2500 492163272 492163321 1.230000e-13 87.9
20 TraesCS1A01G374400 chr2B 92.070 227 18 0 1 227 379297359 379297133 1.120000e-83 320.0
21 TraesCS1A01G374400 chr4A 100.000 52 0 0 2449 2500 1691834 1691885 2.050000e-16 97.1
22 TraesCS1A01G374400 chr6D 98.039 51 1 0 2450 2500 453618503 453618553 3.420000e-14 89.8
23 TraesCS1A01G374400 chr4D 96.154 52 2 0 2449 2500 459039707 459039656 4.430000e-13 86.1
24 TraesCS1A01G374400 chr6B 93.878 49 2 1 2449 2497 256243090 256243137 3.450000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G374400 chr1A 549669550 549672049 2499 False 4617.0 4617 100.000000 1 2500 1 chr1A.!!$F1 2499
1 TraesCS1A01G374400 chr1D 456251407 456253050 1643 False 721.0 950 87.267500 784 2369 2 chr1D.!!$F5 1585
2 TraesCS1A01G374400 chr1D 456202221 456203461 1240 False 599.0 789 84.688500 220 1432 2 chr1D.!!$F4 1212
3 TraesCS1A01G374400 chr1D 457022390 457023037 647 False 296.5 350 85.314000 396 969 2 chr1D.!!$F6 573
4 TraesCS1A01G374400 chr1B 626609383 626611671 2288 False 424.7 811 88.172667 223 1582 3 chr1B.!!$F3 1359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.030908 CGGAGCTACCAATCGACTCC 59.969 60.0 6.03 6.03 42.89 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 3136 1.17218 TTCTGTGGCTCGCCCTTTTG 61.172 55.0 5.33 0.0 34.56 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.207791 TGCTCTCTGATTTCCCTCCC 58.792 55.000 0.00 0.00 0.00 4.30
20 21 1.207791 GCTCTCTGATTTCCCTCCCA 58.792 55.000 0.00 0.00 0.00 4.37
21 22 1.561542 GCTCTCTGATTTCCCTCCCAA 59.438 52.381 0.00 0.00 0.00 4.12
22 23 2.682269 GCTCTCTGATTTCCCTCCCAAC 60.682 54.545 0.00 0.00 0.00 3.77
23 24 2.843113 CTCTCTGATTTCCCTCCCAACT 59.157 50.000 0.00 0.00 0.00 3.16
24 25 3.260205 TCTCTGATTTCCCTCCCAACTT 58.740 45.455 0.00 0.00 0.00 2.66
25 26 3.264450 TCTCTGATTTCCCTCCCAACTTC 59.736 47.826 0.00 0.00 0.00 3.01
26 27 2.308866 TCTGATTTCCCTCCCAACTTCC 59.691 50.000 0.00 0.00 0.00 3.46
27 28 2.310052 CTGATTTCCCTCCCAACTTCCT 59.690 50.000 0.00 0.00 0.00 3.36
28 29 2.721906 TGATTTCCCTCCCAACTTCCTT 59.278 45.455 0.00 0.00 0.00 3.36
29 30 2.675658 TTTCCCTCCCAACTTCCTTG 57.324 50.000 0.00 0.00 0.00 3.61
30 31 1.529744 TTCCCTCCCAACTTCCTTGT 58.470 50.000 0.00 0.00 0.00 3.16
31 32 1.064825 TCCCTCCCAACTTCCTTGTC 58.935 55.000 0.00 0.00 0.00 3.18
32 33 1.068121 CCCTCCCAACTTCCTTGTCT 58.932 55.000 0.00 0.00 0.00 3.41
33 34 1.425448 CCCTCCCAACTTCCTTGTCTT 59.575 52.381 0.00 0.00 0.00 3.01
34 35 2.158460 CCCTCCCAACTTCCTTGTCTTT 60.158 50.000 0.00 0.00 0.00 2.52
35 36 2.887152 CCTCCCAACTTCCTTGTCTTTG 59.113 50.000 0.00 0.00 0.00 2.77
36 37 2.294512 CTCCCAACTTCCTTGTCTTTGC 59.705 50.000 0.00 0.00 0.00 3.68
37 38 2.091885 TCCCAACTTCCTTGTCTTTGCT 60.092 45.455 0.00 0.00 0.00 3.91
38 39 2.695147 CCCAACTTCCTTGTCTTTGCTT 59.305 45.455 0.00 0.00 0.00 3.91
39 40 3.243535 CCCAACTTCCTTGTCTTTGCTTC 60.244 47.826 0.00 0.00 0.00 3.86
40 41 3.243535 CCAACTTCCTTGTCTTTGCTTCC 60.244 47.826 0.00 0.00 0.00 3.46
41 42 3.297134 ACTTCCTTGTCTTTGCTTCCA 57.703 42.857 0.00 0.00 0.00 3.53
42 43 3.217626 ACTTCCTTGTCTTTGCTTCCAG 58.782 45.455 0.00 0.00 0.00 3.86
43 44 2.276732 TCCTTGTCTTTGCTTCCAGG 57.723 50.000 0.00 0.00 0.00 4.45
44 45 0.600057 CCTTGTCTTTGCTTCCAGGC 59.400 55.000 0.00 0.00 0.00 4.85
45 46 0.600057 CTTGTCTTTGCTTCCAGGCC 59.400 55.000 0.00 0.00 0.00 5.19
46 47 0.827507 TTGTCTTTGCTTCCAGGCCC 60.828 55.000 0.00 0.00 0.00 5.80
47 48 1.979155 GTCTTTGCTTCCAGGCCCC 60.979 63.158 0.00 0.00 0.00 5.80
48 49 2.118076 CTTTGCTTCCAGGCCCCA 59.882 61.111 0.00 0.00 0.00 4.96
49 50 2.203625 TTTGCTTCCAGGCCCCAC 60.204 61.111 0.00 0.00 0.00 4.61
50 51 3.826265 TTTGCTTCCAGGCCCCACC 62.826 63.158 0.00 0.00 39.61 4.61
72 73 4.096003 GCCCCGCTGCACCTCTTA 62.096 66.667 0.00 0.00 0.00 2.10
73 74 2.668632 CCCCGCTGCACCTCTTAA 59.331 61.111 0.00 0.00 0.00 1.85
74 75 1.224592 CCCCGCTGCACCTCTTAAT 59.775 57.895 0.00 0.00 0.00 1.40
75 76 0.394352 CCCCGCTGCACCTCTTAATT 60.394 55.000 0.00 0.00 0.00 1.40
76 77 1.017387 CCCGCTGCACCTCTTAATTC 58.983 55.000 0.00 0.00 0.00 2.17
77 78 1.017387 CCGCTGCACCTCTTAATTCC 58.983 55.000 0.00 0.00 0.00 3.01
78 79 1.407437 CCGCTGCACCTCTTAATTCCT 60.407 52.381 0.00 0.00 0.00 3.36
79 80 1.936547 CGCTGCACCTCTTAATTCCTC 59.063 52.381 0.00 0.00 0.00 3.71
80 81 2.677902 CGCTGCACCTCTTAATTCCTCA 60.678 50.000 0.00 0.00 0.00 3.86
81 82 3.549794 GCTGCACCTCTTAATTCCTCAT 58.450 45.455 0.00 0.00 0.00 2.90
82 83 3.563390 GCTGCACCTCTTAATTCCTCATC 59.437 47.826 0.00 0.00 0.00 2.92
83 84 3.797039 TGCACCTCTTAATTCCTCATCG 58.203 45.455 0.00 0.00 0.00 3.84
84 85 3.197766 TGCACCTCTTAATTCCTCATCGT 59.802 43.478 0.00 0.00 0.00 3.73
85 86 4.404394 TGCACCTCTTAATTCCTCATCGTA 59.596 41.667 0.00 0.00 0.00 3.43
86 87 5.105106 TGCACCTCTTAATTCCTCATCGTAA 60.105 40.000 0.00 0.00 0.00 3.18
87 88 5.992217 GCACCTCTTAATTCCTCATCGTAAT 59.008 40.000 0.00 0.00 0.00 1.89
88 89 6.483640 GCACCTCTTAATTCCTCATCGTAATT 59.516 38.462 0.00 0.00 0.00 1.40
89 90 7.307455 GCACCTCTTAATTCCTCATCGTAATTC 60.307 40.741 0.00 0.00 0.00 2.17
90 91 7.928706 CACCTCTTAATTCCTCATCGTAATTCT 59.071 37.037 0.00 0.00 0.00 2.40
91 92 7.928706 ACCTCTTAATTCCTCATCGTAATTCTG 59.071 37.037 0.00 0.00 0.00 3.02
92 93 7.095439 CCTCTTAATTCCTCATCGTAATTCTGC 60.095 40.741 0.00 0.00 0.00 4.26
93 94 7.272244 TCTTAATTCCTCATCGTAATTCTGCA 58.728 34.615 0.00 0.00 0.00 4.41
94 95 7.768582 TCTTAATTCCTCATCGTAATTCTGCAA 59.231 33.333 0.00 0.00 0.00 4.08
95 96 5.998454 ATTCCTCATCGTAATTCTGCAAG 57.002 39.130 0.00 0.00 0.00 4.01
96 97 4.736126 TCCTCATCGTAATTCTGCAAGA 57.264 40.909 0.00 0.00 44.68 3.02
109 110 4.368391 CAAGAACTGCACGGAGCT 57.632 55.556 3.79 0.00 45.94 4.09
110 111 3.514777 CAAGAACTGCACGGAGCTA 57.485 52.632 3.79 0.00 45.94 3.32
111 112 1.071605 CAAGAACTGCACGGAGCTAC 58.928 55.000 3.79 0.00 45.94 3.58
112 113 0.037232 AAGAACTGCACGGAGCTACC 60.037 55.000 3.79 0.00 45.94 3.18
113 114 1.185618 AGAACTGCACGGAGCTACCA 61.186 55.000 3.79 0.00 45.94 3.25
114 115 0.320421 GAACTGCACGGAGCTACCAA 60.320 55.000 3.79 0.00 45.94 3.67
115 116 0.324943 AACTGCACGGAGCTACCAAT 59.675 50.000 3.79 0.00 45.94 3.16
116 117 0.108138 ACTGCACGGAGCTACCAATC 60.108 55.000 3.79 0.00 45.94 2.67
117 118 1.148157 CTGCACGGAGCTACCAATCG 61.148 60.000 3.79 0.00 45.94 3.34
118 119 1.141019 GCACGGAGCTACCAATCGA 59.859 57.895 0.00 0.00 41.15 3.59
119 120 1.146358 GCACGGAGCTACCAATCGAC 61.146 60.000 0.00 0.00 41.15 4.20
120 121 0.456221 CACGGAGCTACCAATCGACT 59.544 55.000 0.00 0.00 38.90 4.18
121 122 0.739561 ACGGAGCTACCAATCGACTC 59.260 55.000 0.00 0.00 38.90 3.36
122 123 0.030908 CGGAGCTACCAATCGACTCC 59.969 60.000 6.03 6.03 42.89 3.85
123 124 0.389757 GGAGCTACCAATCGACTCCC 59.610 60.000 4.97 0.00 40.91 4.30
124 125 1.404843 GAGCTACCAATCGACTCCCT 58.595 55.000 0.00 0.00 0.00 4.20
125 126 1.338655 GAGCTACCAATCGACTCCCTC 59.661 57.143 0.00 0.00 0.00 4.30
126 127 0.389757 GCTACCAATCGACTCCCTCC 59.610 60.000 0.00 0.00 0.00 4.30
127 128 1.041437 CTACCAATCGACTCCCTCCC 58.959 60.000 0.00 0.00 0.00 4.30
128 129 0.754217 TACCAATCGACTCCCTCCCG 60.754 60.000 0.00 0.00 0.00 5.14
129 130 2.058595 CCAATCGACTCCCTCCCGT 61.059 63.158 0.00 0.00 0.00 5.28
130 131 1.614241 CCAATCGACTCCCTCCCGTT 61.614 60.000 0.00 0.00 0.00 4.44
131 132 1.108776 CAATCGACTCCCTCCCGTTA 58.891 55.000 0.00 0.00 0.00 3.18
132 133 1.687123 CAATCGACTCCCTCCCGTTAT 59.313 52.381 0.00 0.00 0.00 1.89
133 134 2.083628 ATCGACTCCCTCCCGTTATT 57.916 50.000 0.00 0.00 0.00 1.40
134 135 1.396653 TCGACTCCCTCCCGTTATTC 58.603 55.000 0.00 0.00 0.00 1.75
135 136 0.388294 CGACTCCCTCCCGTTATTCC 59.612 60.000 0.00 0.00 0.00 3.01
136 137 0.388294 GACTCCCTCCCGTTATTCCG 59.612 60.000 0.00 0.00 0.00 4.30
137 138 0.032813 ACTCCCTCCCGTTATTCCGA 60.033 55.000 0.00 0.00 0.00 4.55
138 139 1.117150 CTCCCTCCCGTTATTCCGAA 58.883 55.000 0.00 0.00 0.00 4.30
139 140 1.068741 CTCCCTCCCGTTATTCCGAAG 59.931 57.143 0.00 0.00 0.00 3.79
154 155 3.731295 GAAGGGCGTCTTCTCTCAG 57.269 57.895 11.58 0.00 46.30 3.35
155 156 0.174617 GAAGGGCGTCTTCTCTCAGG 59.825 60.000 11.58 0.00 46.30 3.86
156 157 0.543174 AAGGGCGTCTTCTCTCAGGT 60.543 55.000 0.00 0.00 0.00 4.00
157 158 1.216710 GGGCGTCTTCTCTCAGGTG 59.783 63.158 0.00 0.00 0.00 4.00
158 159 1.446966 GGCGTCTTCTCTCAGGTGC 60.447 63.158 0.00 0.00 0.00 5.01
159 160 1.446966 GCGTCTTCTCTCAGGTGCC 60.447 63.158 0.00 0.00 0.00 5.01
160 161 1.967535 CGTCTTCTCTCAGGTGCCA 59.032 57.895 0.00 0.00 0.00 4.92
161 162 0.108898 CGTCTTCTCTCAGGTGCCAG 60.109 60.000 0.00 0.00 0.00 4.85
162 163 0.390998 GTCTTCTCTCAGGTGCCAGC 60.391 60.000 0.00 0.00 0.00 4.85
163 164 0.543883 TCTTCTCTCAGGTGCCAGCT 60.544 55.000 0.00 0.00 0.00 4.24
164 165 0.108233 CTTCTCTCAGGTGCCAGCTC 60.108 60.000 0.00 0.00 0.00 4.09
165 166 1.548357 TTCTCTCAGGTGCCAGCTCC 61.548 60.000 0.00 2.47 0.00 4.70
166 167 3.368190 CTCTCAGGTGCCAGCTCCG 62.368 68.421 0.00 1.59 35.01 4.63
171 172 4.175337 GGTGCCAGCTCCGCCATA 62.175 66.667 8.29 0.00 33.12 2.74
172 173 2.590007 GTGCCAGCTCCGCCATAG 60.590 66.667 0.00 0.00 0.00 2.23
173 174 3.865383 TGCCAGCTCCGCCATAGG 61.865 66.667 0.00 0.00 0.00 2.57
174 175 3.550431 GCCAGCTCCGCCATAGGA 61.550 66.667 0.00 0.00 38.80 2.94
180 181 2.763710 TCCGCCATAGGAGCAGCA 60.764 61.111 0.00 0.00 34.92 4.41
181 182 2.280660 CCGCCATAGGAGCAGCAG 60.281 66.667 0.00 0.00 0.00 4.24
182 183 2.280660 CGCCATAGGAGCAGCAGG 60.281 66.667 0.00 0.00 0.00 4.85
183 184 2.800541 CGCCATAGGAGCAGCAGGA 61.801 63.158 0.00 0.00 0.00 3.86
184 185 1.759881 GCCATAGGAGCAGCAGGAT 59.240 57.895 0.00 0.00 0.00 3.24
185 186 0.110104 GCCATAGGAGCAGCAGGATT 59.890 55.000 0.00 0.00 0.00 3.01
186 187 1.478288 GCCATAGGAGCAGCAGGATTT 60.478 52.381 0.00 0.00 0.00 2.17
187 188 2.941480 CCATAGGAGCAGCAGGATTTT 58.059 47.619 0.00 0.00 0.00 1.82
188 189 2.621998 CCATAGGAGCAGCAGGATTTTG 59.378 50.000 0.00 0.00 0.00 2.44
189 190 2.425143 TAGGAGCAGCAGGATTTTGG 57.575 50.000 0.00 0.00 0.00 3.28
190 191 0.969409 AGGAGCAGCAGGATTTTGGC 60.969 55.000 0.00 0.00 0.00 4.52
191 192 0.969409 GGAGCAGCAGGATTTTGGCT 60.969 55.000 0.00 0.00 38.70 4.75
192 193 0.455005 GAGCAGCAGGATTTTGGCTC 59.545 55.000 0.00 0.00 40.63 4.70
193 194 1.138247 GCAGCAGGATTTTGGCTCG 59.862 57.895 0.00 0.00 35.27 5.03
194 195 1.138247 CAGCAGGATTTTGGCTCGC 59.862 57.895 0.00 0.00 35.27 5.03
195 196 2.048603 AGCAGGATTTTGGCTCGCC 61.049 57.895 0.00 0.00 30.74 5.54
196 197 3.068729 GCAGGATTTTGGCTCGCCC 62.069 63.158 5.33 0.00 34.56 6.13
197 198 1.379044 CAGGATTTTGGCTCGCCCT 60.379 57.895 5.33 0.00 34.56 5.19
198 199 0.967380 CAGGATTTTGGCTCGCCCTT 60.967 55.000 5.33 0.00 34.56 3.95
199 200 0.681243 AGGATTTTGGCTCGCCCTTC 60.681 55.000 5.33 0.00 34.56 3.46
200 201 1.667154 GGATTTTGGCTCGCCCTTCC 61.667 60.000 5.33 3.04 34.56 3.46
201 202 0.681243 GATTTTGGCTCGCCCTTCCT 60.681 55.000 5.33 0.00 34.56 3.36
202 203 0.251787 ATTTTGGCTCGCCCTTCCTT 60.252 50.000 5.33 0.00 34.56 3.36
203 204 1.178534 TTTTGGCTCGCCCTTCCTTG 61.179 55.000 5.33 0.00 34.56 3.61
204 205 4.722700 TGGCTCGCCCTTCCTTGC 62.723 66.667 5.33 0.00 34.56 4.01
205 206 4.416738 GGCTCGCCCTTCCTTGCT 62.417 66.667 0.00 0.00 0.00 3.91
206 207 2.360475 GCTCGCCCTTCCTTGCTT 60.360 61.111 0.00 0.00 0.00 3.91
207 208 1.973812 GCTCGCCCTTCCTTGCTTT 60.974 57.895 0.00 0.00 0.00 3.51
208 209 1.927608 GCTCGCCCTTCCTTGCTTTC 61.928 60.000 0.00 0.00 0.00 2.62
209 210 1.303317 TCGCCCTTCCTTGCTTTCC 60.303 57.895 0.00 0.00 0.00 3.13
210 211 2.690778 CGCCCTTCCTTGCTTTCCG 61.691 63.158 0.00 0.00 0.00 4.30
211 212 2.994671 GCCCTTCCTTGCTTTCCGC 61.995 63.158 0.00 0.00 39.77 5.54
212 213 2.690778 CCCTTCCTTGCTTTCCGCG 61.691 63.158 0.00 0.00 43.27 6.46
213 214 1.966451 CCTTCCTTGCTTTCCGCGT 60.966 57.895 4.92 0.00 43.27 6.01
214 215 1.497722 CTTCCTTGCTTTCCGCGTC 59.502 57.895 4.92 0.00 43.27 5.19
215 216 1.912371 CTTCCTTGCTTTCCGCGTCC 61.912 60.000 4.92 0.00 43.27 4.79
216 217 2.668185 TTCCTTGCTTTCCGCGTCCA 62.668 55.000 4.92 0.00 43.27 4.02
217 218 2.680913 CCTTGCTTTCCGCGTCCAG 61.681 63.158 4.92 0.00 43.27 3.86
218 219 3.314388 CTTGCTTTCCGCGTCCAGC 62.314 63.158 4.92 9.57 43.27 4.85
298 299 9.770097 CAGATCTTGTAATGGTATGTACTGATT 57.230 33.333 0.00 0.00 0.00 2.57
311 312 7.393515 GGTATGTACTGATTTGGGGATTAATCC 59.606 40.741 24.14 24.14 46.41 3.01
355 372 9.287373 TGATCTTAAGTGCAATCATATTATGCA 57.713 29.630 1.63 0.00 46.97 3.96
361 378 5.185668 TGCAATCATATTATGCACACACC 57.814 39.130 0.00 0.00 44.52 4.16
362 379 4.037803 TGCAATCATATTATGCACACACCC 59.962 41.667 0.00 0.00 44.52 4.61
363 380 4.037803 GCAATCATATTATGCACACACCCA 59.962 41.667 0.00 0.00 39.81 4.51
364 381 5.451659 GCAATCATATTATGCACACACCCAA 60.452 40.000 0.00 0.00 39.81 4.12
365 382 6.571605 CAATCATATTATGCACACACCCAAA 58.428 36.000 0.00 0.00 0.00 3.28
366 383 6.788598 ATCATATTATGCACACACCCAAAA 57.211 33.333 0.00 0.00 0.00 2.44
367 384 6.596309 TCATATTATGCACACACCCAAAAA 57.404 33.333 0.00 0.00 0.00 1.94
394 411 8.441608 CAAAGACACTTCTCTCTTATTGTCATG 58.558 37.037 0.00 0.00 36.61 3.07
398 437 8.092521 ACACTTCTCTCTTATTGTCATGTTTG 57.907 34.615 0.00 0.00 0.00 2.93
400 439 8.441608 CACTTCTCTCTTATTGTCATGTTTGAG 58.558 37.037 0.00 0.00 30.85 3.02
456 495 1.538047 CCAGCAAGCACACCATAAGT 58.462 50.000 0.00 0.00 0.00 2.24
494 538 4.881273 TCGAATGGTATGAAGGGAACAATG 59.119 41.667 0.00 0.00 0.00 2.82
594 639 2.360165 GTGGAAATGATGACCCATGCTC 59.640 50.000 0.00 0.00 0.00 4.26
608 654 2.158914 CCATGCTCACACTAGCCATACA 60.159 50.000 0.00 0.00 42.05 2.29
610 656 2.179427 TGCTCACACTAGCCATACAGT 58.821 47.619 0.00 0.00 42.05 3.55
625 672 1.216710 CAGTCTCAAGCCCTCGACC 59.783 63.158 0.00 0.00 0.00 4.79
636 683 1.141881 CCTCGACCCTCCATGAACG 59.858 63.158 0.00 0.00 0.00 3.95
681 805 5.651139 TCCTTAATCTACGTGTAACTCAGCT 59.349 40.000 0.00 0.00 31.75 4.24
691 815 0.531753 TAACTCAGCTGCGCACACAA 60.532 50.000 5.66 0.00 0.00 3.33
692 816 1.375853 AACTCAGCTGCGCACACAAA 61.376 50.000 5.66 0.00 0.00 2.83
693 817 1.356270 CTCAGCTGCGCACACAAAA 59.644 52.632 5.66 0.00 0.00 2.44
748 879 2.290896 TGATGGATTCCACACTTCCACC 60.291 50.000 7.76 0.00 42.09 4.61
888 1034 3.913573 CACGCGCATGTCGGTAGC 61.914 66.667 5.73 1.27 38.94 3.58
889 1035 4.129737 ACGCGCATGTCGGTAGCT 62.130 61.111 5.73 0.00 38.94 3.32
890 1036 2.025584 CGCGCATGTCGGTAGCTA 59.974 61.111 8.75 0.00 38.94 3.32
891 1037 2.011349 CGCGCATGTCGGTAGCTAG 61.011 63.158 8.75 0.00 38.94 3.42
1007 1160 1.076549 GCCCATTCTCCACAACCCA 59.923 57.895 0.00 0.00 0.00 4.51
1008 1161 0.967380 GCCCATTCTCCACAACCCAG 60.967 60.000 0.00 0.00 0.00 4.45
1030 1192 1.521010 CATCAGCCAGCTCCTCACG 60.521 63.158 0.00 0.00 0.00 4.35
1031 1193 1.683707 ATCAGCCAGCTCCTCACGA 60.684 57.895 0.00 0.00 0.00 4.35
1038 1200 3.470567 GCTCCTCACGAACGCACG 61.471 66.667 0.00 0.48 39.31 5.34
1067 1229 4.427661 ACCGCACGAGAGCAGCTC 62.428 66.667 15.25 15.25 40.38 4.09
1084 1250 1.842381 CTCCACCACTTCCCTCCCAC 61.842 65.000 0.00 0.00 0.00 4.61
1085 1251 2.153401 CCACCACTTCCCTCCCACA 61.153 63.158 0.00 0.00 0.00 4.17
1143 1312 0.247460 CCTCGTCTGCTTCATGGTCA 59.753 55.000 0.00 0.00 0.00 4.02
1351 1520 1.218316 GCTACGTCAACTCCCCCAG 59.782 63.158 0.00 0.00 0.00 4.45
1368 1537 0.603707 CAGCGGCAAGAAGGTCTTCA 60.604 55.000 12.54 0.00 41.84 3.02
1506 2580 8.493547 GTGTGAGGTATAATAATAAAACGAGGC 58.506 37.037 0.00 0.00 0.00 4.70
1514 2588 1.359848 ATAAAACGAGGCGAGTGCTG 58.640 50.000 0.00 0.00 42.25 4.41
1526 2600 6.591750 AGGCGAGTGCTGTATACTTTATAT 57.408 37.500 4.17 0.00 42.25 0.86
1592 2679 1.679139 CCCGTTATGTCCATGTGCAT 58.321 50.000 0.00 4.91 0.00 3.96
1610 2697 4.509230 GTGCATGTATACTCATGTCCTGTG 59.491 45.833 4.17 0.00 44.68 3.66
1615 2702 5.842907 TGTATACTCATGTCCTGTGTATGC 58.157 41.667 4.17 10.37 41.97 3.14
1622 2709 1.836802 TGTCCTGTGTATGCCAGCATA 59.163 47.619 8.25 8.25 37.82 3.14
1625 2712 3.997021 GTCCTGTGTATGCCAGCATATAC 59.003 47.826 24.42 24.42 45.25 1.47
1668 2759 5.357742 AATTTTTGTTCTGTTCCCTGCTT 57.642 34.783 0.00 0.00 0.00 3.91
1676 2767 2.994995 TTCCCTGCTTCGCTCCGA 60.995 61.111 0.00 0.00 0.00 4.55
1681 2772 1.639298 CCTGCTTCGCTCCGAAAAGG 61.639 60.000 11.80 11.80 45.23 3.11
1760 2851 9.574577 AATATATGAGAATAATACCCCTCCACA 57.425 33.333 0.00 0.00 0.00 4.17
1761 2852 9.749996 ATATATGAGAATAATACCCCTCCACAT 57.250 33.333 0.00 0.00 0.00 3.21
1762 2853 6.786843 ATGAGAATAATACCCCTCCACATT 57.213 37.500 0.00 0.00 0.00 2.71
1763 2854 6.187727 TGAGAATAATACCCCTCCACATTC 57.812 41.667 0.00 0.00 0.00 2.67
1764 2855 5.911178 TGAGAATAATACCCCTCCACATTCT 59.089 40.000 0.00 0.00 34.77 2.40
1765 2856 6.389869 TGAGAATAATACCCCTCCACATTCTT 59.610 38.462 0.00 0.00 32.83 2.52
1766 2857 7.570982 TGAGAATAATACCCCTCCACATTCTTA 59.429 37.037 0.00 0.00 32.83 2.10
1767 2858 8.525729 AGAATAATACCCCTCCACATTCTTAT 57.474 34.615 0.00 0.00 29.32 1.73
1768 2859 8.386264 AGAATAATACCCCTCCACATTCTTATG 58.614 37.037 0.00 0.00 37.79 1.90
1775 2866 8.095452 ACCCCTCCACATTCTTATGATATATC 57.905 38.462 5.73 5.73 35.65 1.63
1794 2885 1.885887 TCAATGGTAGCAACTTGTGGC 59.114 47.619 0.00 0.00 0.00 5.01
1806 2897 5.586243 AGCAACTTGTGGCTACATGTTATAG 59.414 40.000 26.62 18.41 46.95 1.31
1807 2898 5.730568 GCAACTTGTGGCTACATGTTATAGC 60.731 44.000 26.62 22.56 46.95 2.97
1808 2899 4.119862 ACTTGTGGCTACATGTTATAGCG 58.880 43.478 14.82 0.00 45.05 4.26
1809 2900 3.812156 TGTGGCTACATGTTATAGCGT 57.188 42.857 2.30 0.00 45.05 5.07
1810 2901 3.713288 TGTGGCTACATGTTATAGCGTC 58.287 45.455 2.30 4.62 45.05 5.19
1811 2902 3.383505 TGTGGCTACATGTTATAGCGTCT 59.616 43.478 2.30 0.00 45.05 4.18
1812 2903 3.982058 GTGGCTACATGTTATAGCGTCTC 59.018 47.826 2.30 0.00 45.05 3.36
1813 2904 3.634910 TGGCTACATGTTATAGCGTCTCA 59.365 43.478 2.30 0.00 45.05 3.27
1814 2905 3.982058 GGCTACATGTTATAGCGTCTCAC 59.018 47.826 2.30 0.00 45.05 3.51
1815 2906 3.982058 GCTACATGTTATAGCGTCTCACC 59.018 47.826 2.30 0.00 36.02 4.02
1816 2907 4.261656 GCTACATGTTATAGCGTCTCACCT 60.262 45.833 2.30 0.00 36.02 4.00
1817 2908 4.737855 ACATGTTATAGCGTCTCACCTT 57.262 40.909 0.00 0.00 0.00 3.50
1818 2909 4.683832 ACATGTTATAGCGTCTCACCTTC 58.316 43.478 0.00 0.00 0.00 3.46
1819 2910 4.402793 ACATGTTATAGCGTCTCACCTTCT 59.597 41.667 0.00 0.00 0.00 2.85
1820 2911 5.593095 ACATGTTATAGCGTCTCACCTTCTA 59.407 40.000 0.00 0.00 0.00 2.10
1821 2912 5.752892 TGTTATAGCGTCTCACCTTCTAG 57.247 43.478 0.00 0.00 0.00 2.43
1822 2913 4.579340 TGTTATAGCGTCTCACCTTCTAGG 59.421 45.833 0.00 0.00 42.49 3.02
1903 2994 5.945191 TGTGCTTGATGATGTGAAGGATTTA 59.055 36.000 0.00 0.00 0.00 1.40
1919 3010 8.298854 TGAAGGATTTACATGTGTTGAGAAATG 58.701 33.333 9.11 0.00 30.08 2.32
1938 3029 6.435277 AGAAATGAAATGTGGAGTGCTTGTAT 59.565 34.615 0.00 0.00 0.00 2.29
1939 3030 5.824904 ATGAAATGTGGAGTGCTTGTATC 57.175 39.130 0.00 0.00 0.00 2.24
1949 3040 6.708054 GTGGAGTGCTTGTATCTGCTTAATAT 59.292 38.462 0.00 0.00 0.00 1.28
1970 3061 4.835284 TTATGGAGGACTTACATGTGCA 57.165 40.909 9.11 0.00 0.00 4.57
1978 3069 6.294731 GGAGGACTTACATGTGCAAGAAAAAT 60.295 38.462 14.01 0.00 0.00 1.82
1982 3074 8.028938 GGACTTACATGTGCAAGAAAAATATGT 58.971 33.333 14.01 0.00 0.00 2.29
1992 3084 6.036470 GCAAGAAAAATATGTAGTGGGCTTC 58.964 40.000 0.00 0.00 0.00 3.86
1997 3089 8.329502 AGAAAAATATGTAGTGGGCTTCTACTT 58.670 33.333 15.93 13.19 38.67 2.24
2001 3093 7.865706 ATATGTAGTGGGCTTCTACTTTTTG 57.134 36.000 15.93 0.00 38.67 2.44
2005 3097 5.515797 AGTGGGCTTCTACTTTTTGAAAC 57.484 39.130 0.00 0.00 0.00 2.78
2007 3099 5.067805 AGTGGGCTTCTACTTTTTGAAACAG 59.932 40.000 0.00 0.00 0.00 3.16
2016 3108 5.444663 ACTTTTTGAAACAGAGAGGATGC 57.555 39.130 0.00 0.00 0.00 3.91
2017 3109 4.889409 ACTTTTTGAAACAGAGAGGATGCA 59.111 37.500 0.00 0.00 0.00 3.96
2018 3110 5.537674 ACTTTTTGAAACAGAGAGGATGCAT 59.462 36.000 0.00 0.00 0.00 3.96
2043 3136 6.183360 TGCTTGCTTCATACATGTACTTTAGC 60.183 38.462 7.96 14.29 0.00 3.09
2059 3152 2.404566 TAGCAAAAGGGCGAGCCACA 62.405 55.000 16.65 0.00 39.27 4.17
2061 3154 1.600636 CAAAAGGGCGAGCCACAGA 60.601 57.895 16.65 0.00 37.98 3.41
2072 3165 3.705604 CGAGCCACAGAAAAACAACAAT 58.294 40.909 0.00 0.00 0.00 2.71
2075 3168 5.083533 AGCCACAGAAAAACAACAATGAA 57.916 34.783 0.00 0.00 0.00 2.57
2086 3179 4.503741 ACAACAATGAAATGGTCGGAAG 57.496 40.909 0.00 0.00 23.38 3.46
2100 3193 3.118592 GGTCGGAAGGAAATGATGAGTCT 60.119 47.826 0.00 0.00 0.00 3.24
2102 3195 5.221541 GGTCGGAAGGAAATGATGAGTCTAT 60.222 44.000 0.00 0.00 0.00 1.98
2107 3200 8.552034 CGGAAGGAAATGATGAGTCTATAAAAC 58.448 37.037 0.00 0.00 0.00 2.43
2108 3201 9.396022 GGAAGGAAATGATGAGTCTATAAAACA 57.604 33.333 0.00 0.00 0.00 2.83
2110 3203 9.965902 AAGGAAATGATGAGTCTATAAAACAGT 57.034 29.630 0.00 0.00 0.00 3.55
2119 3212 8.997621 TGAGTCTATAAAACAGTGATACCAAC 57.002 34.615 0.00 0.00 0.00 3.77
2139 3232 6.888088 ACCAACTGTTAAGAACCTTGTTTAGT 59.112 34.615 0.00 0.00 0.00 2.24
2140 3233 7.395206 ACCAACTGTTAAGAACCTTGTTTAGTT 59.605 33.333 0.00 0.00 0.00 2.24
2144 3237 9.239551 ACTGTTAAGAACCTTGTTTAGTTTCTT 57.760 29.630 0.00 0.00 0.00 2.52
2145 3238 9.503427 CTGTTAAGAACCTTGTTTAGTTTCTTG 57.497 33.333 7.35 0.00 0.00 3.02
2149 3242 8.519799 AAGAACCTTGTTTAGTTTCTTGATCA 57.480 30.769 0.00 0.00 0.00 2.92
2154 3247 9.533253 ACCTTGTTTAGTTTCTTGATCAAATTG 57.467 29.630 9.88 0.00 0.00 2.32
2173 3266 1.463056 TGTGAATTTGATCGCGGACAC 59.537 47.619 6.13 6.17 32.47 3.67
2181 3274 1.135344 TGATCGCGGACACGAATTACA 60.135 47.619 6.13 0.00 46.59 2.41
2186 3279 1.741055 GCGGACACGAATTACATGGGA 60.741 52.381 0.00 0.00 44.60 4.37
2192 3285 5.587043 GGACACGAATTACATGGGAAATGTA 59.413 40.000 0.00 0.00 33.76 2.29
2193 3286 6.262273 GGACACGAATTACATGGGAAATGTAT 59.738 38.462 0.00 0.00 34.83 2.29
2196 3289 7.041372 ACACGAATTACATGGGAAATGTATAGC 60.041 37.037 0.00 0.00 34.83 2.97
2212 3305 0.254178 TAGCGTCTCGGGGTAGAAGT 59.746 55.000 0.00 0.00 0.00 3.01
2213 3306 0.254178 AGCGTCTCGGGGTAGAAGTA 59.746 55.000 0.00 0.00 0.00 2.24
2236 3329 1.335872 GGGCAATTGTTGTGGACGAAG 60.336 52.381 7.40 0.00 0.00 3.79
2247 3340 0.888619 TGGACGAAGCTCTTGTCGAT 59.111 50.000 12.25 0.00 39.64 3.59
2248 3341 1.135373 TGGACGAAGCTCTTGTCGATC 60.135 52.381 12.25 6.17 39.64 3.69
2249 3342 1.135373 GGACGAAGCTCTTGTCGATCA 60.135 52.381 12.25 0.00 39.64 2.92
2250 3343 2.181205 GACGAAGCTCTTGTCGATCAG 58.819 52.381 12.25 0.00 39.64 2.90
2251 3344 1.135257 ACGAAGCTCTTGTCGATCAGG 60.135 52.381 12.25 0.00 39.64 3.86
2252 3345 1.135257 CGAAGCTCTTGTCGATCAGGT 60.135 52.381 0.00 0.00 39.64 4.00
2253 3346 2.535331 GAAGCTCTTGTCGATCAGGTC 58.465 52.381 0.00 0.00 0.00 3.85
2280 3373 1.269166 CCTCTTTGGTCGTTCGATCG 58.731 55.000 9.36 9.36 0.00 3.69
2284 3378 1.796459 CTTTGGTCGTTCGATCGGTTT 59.204 47.619 16.41 0.00 0.00 3.27
2289 3383 0.599558 TCGTTCGATCGGTTTGACCT 59.400 50.000 16.41 0.00 35.66 3.85
2290 3384 1.000060 TCGTTCGATCGGTTTGACCTT 60.000 47.619 16.41 0.00 35.66 3.50
2291 3385 1.126113 CGTTCGATCGGTTTGACCTTG 59.874 52.381 16.41 0.00 35.66 3.61
2293 3387 0.682852 TCGATCGGTTTGACCTTGGT 59.317 50.000 16.41 0.00 35.66 3.67
2302 3396 3.930848 GGTTTGACCTTGGTAGTACATCG 59.069 47.826 2.06 0.00 34.73 3.84
2308 3402 0.099259 TTGGTAGTACATCGTCGGCG 59.901 55.000 1.15 1.15 39.92 6.46
2313 3407 2.505337 TACATCGTCGGCGTGCAC 60.505 61.111 10.18 6.82 39.49 4.57
2325 3419 2.717044 CGTGCACGGACCAGGGATA 61.717 63.158 31.15 0.00 35.37 2.59
2326 3420 1.153429 GTGCACGGACCAGGGATAC 60.153 63.158 0.00 0.00 0.00 2.24
2329 3423 1.144057 CACGGACCAGGGATACTGC 59.856 63.158 0.00 0.00 46.14 4.40
2332 3426 1.832912 GGACCAGGGATACTGCCAG 59.167 63.158 0.00 0.00 46.14 4.85
2340 3434 2.772515 AGGGATACTGCCAGTTAACCTC 59.227 50.000 1.02 0.00 0.00 3.85
2341 3435 2.772515 GGGATACTGCCAGTTAACCTCT 59.227 50.000 1.02 0.00 0.00 3.69
2343 3437 3.181464 GGATACTGCCAGTTAACCTCTCC 60.181 52.174 1.02 0.00 0.00 3.71
2345 3439 3.185880 ACTGCCAGTTAACCTCTCCTA 57.814 47.619 0.88 0.00 0.00 2.94
2348 3442 3.244582 TGCCAGTTAACCTCTCCTACAA 58.755 45.455 0.88 0.00 0.00 2.41
2356 3450 7.760340 CAGTTAACCTCTCCTACAAGACATTAC 59.240 40.741 0.88 0.00 0.00 1.89
2357 3451 5.678955 AACCTCTCCTACAAGACATTACC 57.321 43.478 0.00 0.00 0.00 2.85
2369 3464 7.074653 ACAAGACATTACCGGGAATATACAT 57.925 36.000 12.78 0.00 0.00 2.29
2370 3465 8.197592 ACAAGACATTACCGGGAATATACATA 57.802 34.615 12.78 0.00 0.00 2.29
2371 3466 8.653191 ACAAGACATTACCGGGAATATACATAA 58.347 33.333 12.78 0.00 0.00 1.90
2372 3467 9.496873 CAAGACATTACCGGGAATATACATAAA 57.503 33.333 12.78 0.00 0.00 1.40
2373 3468 9.720769 AAGACATTACCGGGAATATACATAAAG 57.279 33.333 12.78 0.00 0.00 1.85
2374 3469 8.877195 AGACATTACCGGGAATATACATAAAGT 58.123 33.333 12.78 1.86 0.00 2.66
2375 3470 8.842358 ACATTACCGGGAATATACATAAAGTG 57.158 34.615 12.78 0.00 0.00 3.16
2376 3471 8.653191 ACATTACCGGGAATATACATAAAGTGA 58.347 33.333 12.78 0.00 0.00 3.41
2377 3472 9.667107 CATTACCGGGAATATACATAAAGTGAT 57.333 33.333 12.78 0.00 0.00 3.06
2381 3476 9.720769 ACCGGGAATATACATAAAGTGATAAAG 57.279 33.333 6.32 0.00 0.00 1.85
2382 3477 9.938280 CCGGGAATATACATAAAGTGATAAAGA 57.062 33.333 0.00 0.00 0.00 2.52
2430 3525 8.887036 ACAAAGCATAAACTAAAAAGGGAAAG 57.113 30.769 0.00 0.00 0.00 2.62
2431 3526 8.700973 ACAAAGCATAAACTAAAAAGGGAAAGA 58.299 29.630 0.00 0.00 0.00 2.52
2432 3527 9.541143 CAAAGCATAAACTAAAAAGGGAAAGAA 57.459 29.630 0.00 0.00 0.00 2.52
2434 3529 9.764363 AAGCATAAACTAAAAAGGGAAAGAAAG 57.236 29.630 0.00 0.00 0.00 2.62
2435 3530 8.367911 AGCATAAACTAAAAAGGGAAAGAAAGG 58.632 33.333 0.00 0.00 0.00 3.11
2436 3531 7.117812 GCATAAACTAAAAAGGGAAAGAAAGGC 59.882 37.037 0.00 0.00 0.00 4.35
2437 3532 4.848562 ACTAAAAAGGGAAAGAAAGGCG 57.151 40.909 0.00 0.00 0.00 5.52
2438 3533 4.466827 ACTAAAAAGGGAAAGAAAGGCGA 58.533 39.130 0.00 0.00 0.00 5.54
2439 3534 3.728076 AAAAAGGGAAAGAAAGGCGAC 57.272 42.857 0.00 0.00 0.00 5.19
2440 3535 1.235724 AAAGGGAAAGAAAGGCGACG 58.764 50.000 0.00 0.00 0.00 5.12
2441 3536 0.108019 AAGGGAAAGAAAGGCGACGT 59.892 50.000 0.00 0.00 0.00 4.34
2442 3537 0.602905 AGGGAAAGAAAGGCGACGTG 60.603 55.000 0.00 0.00 0.00 4.49
2443 3538 0.883370 GGGAAAGAAAGGCGACGTGT 60.883 55.000 0.00 0.00 0.00 4.49
2444 3539 1.606224 GGGAAAGAAAGGCGACGTGTA 60.606 52.381 0.00 0.00 0.00 2.90
2445 3540 1.458445 GGAAAGAAAGGCGACGTGTAC 59.542 52.381 0.00 0.00 0.00 2.90
2446 3541 2.129607 GAAAGAAAGGCGACGTGTACA 58.870 47.619 0.00 0.00 0.00 2.90
2447 3542 1.494824 AAGAAAGGCGACGTGTACAC 58.505 50.000 16.32 16.32 0.00 2.90
2448 3543 0.672342 AGAAAGGCGACGTGTACACT 59.328 50.000 23.01 10.66 0.00 3.55
2449 3544 1.068127 AGAAAGGCGACGTGTACACTT 59.932 47.619 23.01 14.74 0.00 3.16
2450 3545 1.862827 GAAAGGCGACGTGTACACTTT 59.137 47.619 23.01 15.01 0.00 2.66
2451 3546 1.944032 AAGGCGACGTGTACACTTTT 58.056 45.000 23.01 7.81 0.00 2.27
2452 3547 1.944032 AGGCGACGTGTACACTTTTT 58.056 45.000 23.01 5.31 0.00 1.94
2476 3571 8.800370 TTTTTGAAGGGAAGCAAAGTTTTATT 57.200 26.923 0.00 0.00 35.64 1.40
2477 3572 7.784633 TTTGAAGGGAAGCAAAGTTTTATTG 57.215 32.000 0.00 0.00 31.07 1.90
2488 3583 5.889520 CAAAGTTTTATTGCTTACGTGTGC 58.110 37.500 0.00 2.56 0.00 4.57
2489 3584 3.805823 AGTTTTATTGCTTACGTGTGCG 58.194 40.909 0.00 0.00 44.93 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.207791 GGGAGGGAAATCAGAGAGCA 58.792 55.000 0.00 0.00 0.00 4.26
1 2 1.207791 TGGGAGGGAAATCAGAGAGC 58.792 55.000 0.00 0.00 0.00 4.09
2 3 2.843113 AGTTGGGAGGGAAATCAGAGAG 59.157 50.000 0.00 0.00 0.00 3.20
3 4 2.921221 AGTTGGGAGGGAAATCAGAGA 58.079 47.619 0.00 0.00 0.00 3.10
4 5 3.615155 GAAGTTGGGAGGGAAATCAGAG 58.385 50.000 0.00 0.00 0.00 3.35
5 6 2.308866 GGAAGTTGGGAGGGAAATCAGA 59.691 50.000 0.00 0.00 0.00 3.27
6 7 2.310052 AGGAAGTTGGGAGGGAAATCAG 59.690 50.000 0.00 0.00 0.00 2.90
7 8 2.358258 AGGAAGTTGGGAGGGAAATCA 58.642 47.619 0.00 0.00 0.00 2.57
8 9 3.092301 CAAGGAAGTTGGGAGGGAAATC 58.908 50.000 0.00 0.00 31.82 2.17
9 10 2.450886 ACAAGGAAGTTGGGAGGGAAAT 59.549 45.455 0.00 0.00 40.90 2.17
10 11 1.856920 ACAAGGAAGTTGGGAGGGAAA 59.143 47.619 0.00 0.00 40.90 3.13
11 12 1.423921 GACAAGGAAGTTGGGAGGGAA 59.576 52.381 0.00 0.00 40.90 3.97
12 13 1.064825 GACAAGGAAGTTGGGAGGGA 58.935 55.000 0.00 0.00 40.90 4.20
13 14 1.068121 AGACAAGGAAGTTGGGAGGG 58.932 55.000 0.00 0.00 40.90 4.30
14 15 2.887152 CAAAGACAAGGAAGTTGGGAGG 59.113 50.000 0.00 0.00 40.90 4.30
15 16 2.294512 GCAAAGACAAGGAAGTTGGGAG 59.705 50.000 0.00 0.00 40.90 4.30
16 17 2.091885 AGCAAAGACAAGGAAGTTGGGA 60.092 45.455 0.00 0.00 40.90 4.37
17 18 2.310538 AGCAAAGACAAGGAAGTTGGG 58.689 47.619 0.00 0.00 40.90 4.12
18 19 3.243535 GGAAGCAAAGACAAGGAAGTTGG 60.244 47.826 0.00 0.00 40.90 3.77
19 20 3.381272 TGGAAGCAAAGACAAGGAAGTTG 59.619 43.478 0.00 0.00 42.48 3.16
20 21 3.631250 TGGAAGCAAAGACAAGGAAGTT 58.369 40.909 0.00 0.00 0.00 2.66
21 22 3.217626 CTGGAAGCAAAGACAAGGAAGT 58.782 45.455 0.00 0.00 0.00 3.01
22 23 2.555757 CCTGGAAGCAAAGACAAGGAAG 59.444 50.000 0.00 0.00 0.00 3.46
23 24 2.586425 CCTGGAAGCAAAGACAAGGAA 58.414 47.619 0.00 0.00 0.00 3.36
24 25 1.819305 GCCTGGAAGCAAAGACAAGGA 60.819 52.381 0.00 0.00 0.00 3.36
25 26 0.600057 GCCTGGAAGCAAAGACAAGG 59.400 55.000 0.00 0.00 0.00 3.61
26 27 0.600057 GGCCTGGAAGCAAAGACAAG 59.400 55.000 0.00 0.00 0.00 3.16
27 28 0.827507 GGGCCTGGAAGCAAAGACAA 60.828 55.000 0.84 0.00 0.00 3.18
28 29 1.228552 GGGCCTGGAAGCAAAGACA 60.229 57.895 0.84 0.00 0.00 3.41
29 30 1.979155 GGGGCCTGGAAGCAAAGAC 60.979 63.158 0.84 0.00 0.00 3.01
30 31 2.440599 GGGGCCTGGAAGCAAAGA 59.559 61.111 0.84 0.00 0.00 2.52
31 32 2.118076 TGGGGCCTGGAAGCAAAG 59.882 61.111 0.84 0.00 0.00 2.77
32 33 2.203625 GTGGGGCCTGGAAGCAAA 60.204 61.111 0.84 0.00 0.00 3.68
33 34 4.299796 GGTGGGGCCTGGAAGCAA 62.300 66.667 0.84 0.00 0.00 3.91
55 56 2.893682 ATTAAGAGGTGCAGCGGGGC 62.894 60.000 10.78 1.69 0.00 5.80
56 57 0.394352 AATTAAGAGGTGCAGCGGGG 60.394 55.000 10.78 0.00 0.00 5.73
57 58 1.017387 GAATTAAGAGGTGCAGCGGG 58.983 55.000 10.78 0.00 0.00 6.13
58 59 1.017387 GGAATTAAGAGGTGCAGCGG 58.983 55.000 10.78 0.00 0.00 5.52
59 60 1.936547 GAGGAATTAAGAGGTGCAGCG 59.063 52.381 10.78 0.00 0.00 5.18
60 61 2.991250 TGAGGAATTAAGAGGTGCAGC 58.009 47.619 8.11 8.11 0.00 5.25
61 62 3.806521 CGATGAGGAATTAAGAGGTGCAG 59.193 47.826 0.00 0.00 0.00 4.41
62 63 3.197766 ACGATGAGGAATTAAGAGGTGCA 59.802 43.478 0.00 0.00 0.00 4.57
63 64 3.798202 ACGATGAGGAATTAAGAGGTGC 58.202 45.455 0.00 0.00 0.00 5.01
64 65 7.928706 AGAATTACGATGAGGAATTAAGAGGTG 59.071 37.037 0.00 0.00 43.19 4.00
65 66 7.928706 CAGAATTACGATGAGGAATTAAGAGGT 59.071 37.037 0.00 0.00 43.19 3.85
66 67 7.095439 GCAGAATTACGATGAGGAATTAAGAGG 60.095 40.741 0.00 0.00 43.19 3.69
67 68 7.439356 TGCAGAATTACGATGAGGAATTAAGAG 59.561 37.037 0.00 0.00 43.19 2.85
68 69 7.272244 TGCAGAATTACGATGAGGAATTAAGA 58.728 34.615 0.00 0.00 43.19 2.10
69 70 7.482654 TGCAGAATTACGATGAGGAATTAAG 57.517 36.000 0.00 0.00 43.19 1.85
70 71 7.768582 TCTTGCAGAATTACGATGAGGAATTAA 59.231 33.333 0.00 0.00 43.19 1.40
71 72 7.272244 TCTTGCAGAATTACGATGAGGAATTA 58.728 34.615 0.00 0.00 43.19 1.40
72 73 6.115446 TCTTGCAGAATTACGATGAGGAATT 58.885 36.000 0.00 0.00 45.71 2.17
73 74 5.674525 TCTTGCAGAATTACGATGAGGAAT 58.325 37.500 0.00 0.00 34.02 3.01
74 75 5.084818 TCTTGCAGAATTACGATGAGGAA 57.915 39.130 0.00 0.00 0.00 3.36
75 76 4.736126 TCTTGCAGAATTACGATGAGGA 57.264 40.909 0.00 0.00 0.00 3.71
76 77 4.872691 AGTTCTTGCAGAATTACGATGAGG 59.127 41.667 0.00 0.00 36.50 3.86
77 78 5.793675 CAGTTCTTGCAGAATTACGATGAG 58.206 41.667 0.00 0.00 36.50 2.90
78 79 5.784750 CAGTTCTTGCAGAATTACGATGA 57.215 39.130 0.00 0.00 36.50 2.92
92 93 1.071605 GTAGCTCCGTGCAGTTCTTG 58.928 55.000 0.00 0.00 45.94 3.02
93 94 0.037232 GGTAGCTCCGTGCAGTTCTT 60.037 55.000 0.00 0.00 45.94 2.52
94 95 1.185618 TGGTAGCTCCGTGCAGTTCT 61.186 55.000 0.00 0.00 45.94 3.01
95 96 0.320421 TTGGTAGCTCCGTGCAGTTC 60.320 55.000 0.00 0.00 45.94 3.01
96 97 0.324943 ATTGGTAGCTCCGTGCAGTT 59.675 50.000 0.00 0.00 45.94 3.16
97 98 0.108138 GATTGGTAGCTCCGTGCAGT 60.108 55.000 0.00 0.00 45.94 4.40
98 99 1.148157 CGATTGGTAGCTCCGTGCAG 61.148 60.000 0.00 0.00 45.94 4.41
99 100 1.153647 CGATTGGTAGCTCCGTGCA 60.154 57.895 0.00 0.00 45.94 4.57
100 101 1.141019 TCGATTGGTAGCTCCGTGC 59.859 57.895 0.00 0.00 43.29 5.34
101 102 0.456221 AGTCGATTGGTAGCTCCGTG 59.544 55.000 0.00 0.00 39.52 4.94
102 103 0.739561 GAGTCGATTGGTAGCTCCGT 59.260 55.000 0.00 0.00 39.52 4.69
103 104 0.030908 GGAGTCGATTGGTAGCTCCG 59.969 60.000 0.00 0.00 36.74 4.63
104 105 0.389757 GGGAGTCGATTGGTAGCTCC 59.610 60.000 7.31 7.31 43.56 4.70
105 106 1.338655 GAGGGAGTCGATTGGTAGCTC 59.661 57.143 0.00 0.00 0.00 4.09
106 107 1.404843 GAGGGAGTCGATTGGTAGCT 58.595 55.000 0.00 0.00 0.00 3.32
107 108 0.389757 GGAGGGAGTCGATTGGTAGC 59.610 60.000 0.00 0.00 0.00 3.58
108 109 1.041437 GGGAGGGAGTCGATTGGTAG 58.959 60.000 0.00 0.00 0.00 3.18
109 110 0.754217 CGGGAGGGAGTCGATTGGTA 60.754 60.000 0.00 0.00 0.00 3.25
110 111 2.058595 CGGGAGGGAGTCGATTGGT 61.059 63.158 0.00 0.00 0.00 3.67
111 112 1.614241 AACGGGAGGGAGTCGATTGG 61.614 60.000 0.00 0.00 0.00 3.16
112 113 1.108776 TAACGGGAGGGAGTCGATTG 58.891 55.000 0.00 0.00 0.00 2.67
113 114 2.083628 ATAACGGGAGGGAGTCGATT 57.916 50.000 0.00 0.00 0.00 3.34
114 115 1.962100 GAATAACGGGAGGGAGTCGAT 59.038 52.381 0.00 0.00 0.00 3.59
115 116 1.396653 GAATAACGGGAGGGAGTCGA 58.603 55.000 0.00 0.00 0.00 4.20
116 117 0.388294 GGAATAACGGGAGGGAGTCG 59.612 60.000 0.00 0.00 0.00 4.18
117 118 0.388294 CGGAATAACGGGAGGGAGTC 59.612 60.000 0.00 0.00 0.00 3.36
118 119 0.032813 TCGGAATAACGGGAGGGAGT 60.033 55.000 0.00 0.00 0.00 3.85
119 120 1.068741 CTTCGGAATAACGGGAGGGAG 59.931 57.143 0.00 0.00 0.00 4.30
120 121 1.117150 CTTCGGAATAACGGGAGGGA 58.883 55.000 0.00 0.00 0.00 4.20
121 122 0.106149 CCTTCGGAATAACGGGAGGG 59.894 60.000 0.00 0.00 35.44 4.30
122 123 0.106149 CCCTTCGGAATAACGGGAGG 59.894 60.000 6.91 0.00 37.05 4.30
123 124 0.532196 GCCCTTCGGAATAACGGGAG 60.532 60.000 15.02 0.00 37.05 4.30
124 125 1.523524 GCCCTTCGGAATAACGGGA 59.476 57.895 15.02 0.00 37.05 5.14
125 126 1.885850 CGCCCTTCGGAATAACGGG 60.886 63.158 8.12 8.12 37.97 5.28
126 127 1.149964 GACGCCCTTCGGAATAACGG 61.150 60.000 9.98 0.39 43.86 4.44
127 128 0.179119 AGACGCCCTTCGGAATAACG 60.179 55.000 0.00 0.00 43.86 3.18
128 129 1.931841 GAAGACGCCCTTCGGAATAAC 59.068 52.381 2.93 0.00 41.54 1.89
129 130 2.304751 GAAGACGCCCTTCGGAATAA 57.695 50.000 2.93 0.00 41.54 1.40
131 132 4.934989 GAAGACGCCCTTCGGAAT 57.065 55.556 2.93 0.00 41.54 3.01
137 138 0.543174 ACCTGAGAGAAGACGCCCTT 60.543 55.000 0.00 0.00 37.93 3.95
138 139 1.077625 ACCTGAGAGAAGACGCCCT 59.922 57.895 0.00 0.00 0.00 5.19
139 140 1.216710 CACCTGAGAGAAGACGCCC 59.783 63.158 0.00 0.00 0.00 6.13
140 141 1.446966 GCACCTGAGAGAAGACGCC 60.447 63.158 0.00 0.00 0.00 5.68
141 142 1.446966 GGCACCTGAGAGAAGACGC 60.447 63.158 0.00 0.00 0.00 5.19
142 143 0.108898 CTGGCACCTGAGAGAAGACG 60.109 60.000 0.00 0.00 0.00 4.18
143 144 0.390998 GCTGGCACCTGAGAGAAGAC 60.391 60.000 0.00 0.00 0.00 3.01
144 145 0.543883 AGCTGGCACCTGAGAGAAGA 60.544 55.000 0.00 0.00 0.00 2.87
145 146 0.108233 GAGCTGGCACCTGAGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
146 147 1.548357 GGAGCTGGCACCTGAGAGAA 61.548 60.000 0.00 0.00 0.00 2.87
147 148 1.986757 GGAGCTGGCACCTGAGAGA 60.987 63.158 0.00 0.00 0.00 3.10
148 149 2.583520 GGAGCTGGCACCTGAGAG 59.416 66.667 0.00 0.00 0.00 3.20
149 150 3.385384 CGGAGCTGGCACCTGAGA 61.385 66.667 0.00 0.00 0.00 3.27
163 164 2.763710 TGCTGCTCCTATGGCGGA 60.764 61.111 0.00 0.00 38.23 5.54
164 165 2.280660 CTGCTGCTCCTATGGCGG 60.281 66.667 0.00 0.00 38.92 6.13
165 166 2.109517 ATCCTGCTGCTCCTATGGCG 62.110 60.000 0.00 0.00 0.00 5.69
166 167 0.110104 AATCCTGCTGCTCCTATGGC 59.890 55.000 0.00 0.00 0.00 4.40
167 168 2.621998 CAAAATCCTGCTGCTCCTATGG 59.378 50.000 0.00 0.00 0.00 2.74
168 169 2.621998 CCAAAATCCTGCTGCTCCTATG 59.378 50.000 0.00 0.00 0.00 2.23
169 170 2.941480 CCAAAATCCTGCTGCTCCTAT 58.059 47.619 0.00 0.00 0.00 2.57
170 171 1.683011 GCCAAAATCCTGCTGCTCCTA 60.683 52.381 0.00 0.00 0.00 2.94
171 172 0.969409 GCCAAAATCCTGCTGCTCCT 60.969 55.000 0.00 0.00 0.00 3.69
172 173 0.969409 AGCCAAAATCCTGCTGCTCC 60.969 55.000 0.00 0.00 33.23 4.70
173 174 0.455005 GAGCCAAAATCCTGCTGCTC 59.545 55.000 0.00 0.00 38.51 4.26
174 175 1.310933 CGAGCCAAAATCCTGCTGCT 61.311 55.000 0.00 0.00 34.99 4.24
175 176 1.138247 CGAGCCAAAATCCTGCTGC 59.862 57.895 0.00 0.00 34.99 5.25
176 177 1.138247 GCGAGCCAAAATCCTGCTG 59.862 57.895 0.00 0.00 34.99 4.41
177 178 2.048603 GGCGAGCCAAAATCCTGCT 61.049 57.895 9.58 0.00 38.24 4.24
178 179 2.491621 GGCGAGCCAAAATCCTGC 59.508 61.111 9.58 0.00 35.81 4.85
179 180 0.967380 AAGGGCGAGCCAAAATCCTG 60.967 55.000 16.65 0.00 37.98 3.86
180 181 0.681243 GAAGGGCGAGCCAAAATCCT 60.681 55.000 16.65 0.00 37.98 3.24
181 182 1.667154 GGAAGGGCGAGCCAAAATCC 61.667 60.000 16.65 12.56 37.98 3.01
182 183 0.681243 AGGAAGGGCGAGCCAAAATC 60.681 55.000 16.65 7.64 37.98 2.17
183 184 0.251787 AAGGAAGGGCGAGCCAAAAT 60.252 50.000 16.65 0.00 37.98 1.82
184 185 1.152830 AAGGAAGGGCGAGCCAAAA 59.847 52.632 16.65 0.00 37.98 2.44
185 186 1.603455 CAAGGAAGGGCGAGCCAAA 60.603 57.895 16.65 0.00 37.98 3.28
186 187 2.034066 CAAGGAAGGGCGAGCCAA 59.966 61.111 16.65 0.00 37.98 4.52
187 188 4.722700 GCAAGGAAGGGCGAGCCA 62.723 66.667 16.65 0.00 37.98 4.75
188 189 3.927481 AAGCAAGGAAGGGCGAGCC 62.927 63.158 5.37 5.37 34.54 4.70
189 190 1.927608 GAAAGCAAGGAAGGGCGAGC 61.928 60.000 0.00 0.00 34.54 5.03
190 191 1.308783 GGAAAGCAAGGAAGGGCGAG 61.309 60.000 0.00 0.00 34.54 5.03
191 192 1.303317 GGAAAGCAAGGAAGGGCGA 60.303 57.895 0.00 0.00 34.54 5.54
192 193 2.690778 CGGAAAGCAAGGAAGGGCG 61.691 63.158 0.00 0.00 34.54 6.13
193 194 3.278157 CGGAAAGCAAGGAAGGGC 58.722 61.111 0.00 0.00 0.00 5.19
208 209 2.169789 CAGAATCTGCTGGACGCGG 61.170 63.158 12.47 0.00 46.72 6.46
209 210 1.016130 AACAGAATCTGCTGGACGCG 61.016 55.000 10.62 3.53 43.27 6.01
210 211 0.445436 CAACAGAATCTGCTGGACGC 59.555 55.000 10.62 0.00 40.20 5.19
215 216 5.120830 GTGTAGTTACCAACAGAATCTGCTG 59.879 44.000 10.62 8.49 41.63 4.41
216 217 5.221641 TGTGTAGTTACCAACAGAATCTGCT 60.222 40.000 10.62 0.00 34.37 4.24
217 218 4.994852 TGTGTAGTTACCAACAGAATCTGC 59.005 41.667 10.62 0.00 34.37 4.26
218 219 7.817478 TGTATGTGTAGTTACCAACAGAATCTG 59.183 37.037 8.98 8.98 37.52 2.90
221 222 8.911918 TTTGTATGTGTAGTTACCAACAGAAT 57.088 30.769 0.00 0.00 0.00 2.40
233 234 6.374333 CCCAGCACTAAATTTGTATGTGTAGT 59.626 38.462 0.00 0.00 0.00 2.73
234 235 6.677920 GCCCAGCACTAAATTTGTATGTGTAG 60.678 42.308 0.00 2.85 0.00 2.74
252 253 1.608542 GCAAATGACAAATGCCCAGCA 60.609 47.619 4.86 0.00 44.86 4.41
298 299 8.391305 AGAATCAAAAATGGATTAATCCCCAA 57.609 30.769 27.97 12.99 46.59 4.12
352 369 2.300152 TCTTTGTTTTTGGGTGTGTGCA 59.700 40.909 0.00 0.00 0.00 4.57
353 370 2.670905 GTCTTTGTTTTTGGGTGTGTGC 59.329 45.455 0.00 0.00 0.00 4.57
354 371 3.677596 GTGTCTTTGTTTTTGGGTGTGTG 59.322 43.478 0.00 0.00 0.00 3.82
355 372 3.576550 AGTGTCTTTGTTTTTGGGTGTGT 59.423 39.130 0.00 0.00 0.00 3.72
356 373 4.186856 AGTGTCTTTGTTTTTGGGTGTG 57.813 40.909 0.00 0.00 0.00 3.82
357 374 4.526650 AGAAGTGTCTTTGTTTTTGGGTGT 59.473 37.500 0.00 0.00 0.00 4.16
358 375 5.072040 AGAAGTGTCTTTGTTTTTGGGTG 57.928 39.130 0.00 0.00 0.00 4.61
359 376 5.016831 AGAGAAGTGTCTTTGTTTTTGGGT 58.983 37.500 0.00 0.00 32.80 4.51
360 377 5.358160 AGAGAGAAGTGTCTTTGTTTTTGGG 59.642 40.000 0.00 0.00 32.80 4.12
361 378 6.442513 AGAGAGAAGTGTCTTTGTTTTTGG 57.557 37.500 0.00 0.00 32.80 3.28
364 381 9.178758 ACAATAAGAGAGAAGTGTCTTTGTTTT 57.821 29.630 0.00 0.00 37.48 2.43
365 382 8.738645 ACAATAAGAGAGAAGTGTCTTTGTTT 57.261 30.769 0.00 0.00 37.48 2.83
366 383 7.987458 TGACAATAAGAGAGAAGTGTCTTTGTT 59.013 33.333 4.80 0.00 37.48 2.83
367 384 7.500992 TGACAATAAGAGAGAAGTGTCTTTGT 58.499 34.615 4.80 0.00 37.48 2.83
394 411 3.655276 TCGAGTCCAACCTACTCAAAC 57.345 47.619 0.00 0.00 42.91 2.93
398 437 4.657436 ATTCATCGAGTCCAACCTACTC 57.343 45.455 0.00 0.00 40.01 2.59
400 439 6.496338 AAAAATTCATCGAGTCCAACCTAC 57.504 37.500 0.00 0.00 0.00 3.18
426 465 0.881118 GCTTGCTGGGAATTTCGACA 59.119 50.000 0.00 0.00 0.00 4.35
429 468 0.597568 TGTGCTTGCTGGGAATTTCG 59.402 50.000 0.00 0.00 0.00 3.46
436 475 0.813184 CTTATGGTGTGCTTGCTGGG 59.187 55.000 0.00 0.00 0.00 4.45
473 517 6.530019 AACATTGTTCCCTTCATACCATTC 57.470 37.500 0.00 0.00 0.00 2.67
520 565 5.969423 AGGTCAAGGAATTGCACATAATTG 58.031 37.500 0.00 0.00 30.78 2.32
528 573 5.774690 AGTGATTTTAGGTCAAGGAATTGCA 59.225 36.000 0.00 0.00 0.00 4.08
529 574 6.071952 TGAGTGATTTTAGGTCAAGGAATTGC 60.072 38.462 0.00 0.00 0.00 3.56
563 608 6.295575 GGGTCATCATTTCCACAATTAAACCA 60.296 38.462 0.00 0.00 0.00 3.67
594 639 4.428209 CTTGAGACTGTATGGCTAGTGTG 58.572 47.826 0.00 0.00 31.30 3.82
608 654 1.985116 GGGTCGAGGGCTTGAGACT 60.985 63.158 0.00 0.00 34.34 3.24
610 656 1.682684 GAGGGTCGAGGGCTTGAGA 60.683 63.158 0.00 0.00 0.00 3.27
636 683 2.500229 AGAGATCGATCGAACCTCCTC 58.500 52.381 30.54 24.52 0.00 3.71
643 690 6.885952 AGATTAAGGAAGAGATCGATCGAA 57.114 37.500 23.50 5.77 0.00 3.71
681 805 1.815840 TCTCGGTTTTGTGTGCGCA 60.816 52.632 5.66 5.66 0.00 6.09
691 815 2.870411 CGTTCAAGGAAAGTCTCGGTTT 59.130 45.455 0.00 0.00 0.00 3.27
692 816 2.159000 ACGTTCAAGGAAAGTCTCGGTT 60.159 45.455 0.00 0.00 29.10 4.44
693 817 1.411612 ACGTTCAAGGAAAGTCTCGGT 59.588 47.619 0.00 0.00 29.10 4.69
733 864 0.036306 GGTCGGTGGAAGTGTGGAAT 59.964 55.000 0.00 0.00 0.00 3.01
748 879 2.505628 CTGATGATCTCAGTGGGTCG 57.494 55.000 11.75 0.00 45.42 4.79
843 987 3.214250 CTCCACTAGCGGCCGATCC 62.214 68.421 33.48 12.00 0.00 3.36
1030 1192 3.470567 CTCTGCGACCGTGCGTTC 61.471 66.667 0.00 0.00 37.81 3.95
1031 1193 3.973516 TCTCTGCGACCGTGCGTT 61.974 61.111 0.00 0.00 37.81 4.84
1045 1207 2.505118 GCTCTCGTGCGGTGTCTC 60.505 66.667 0.00 0.00 0.00 3.36
1067 1229 2.153401 TGTGGGAGGGAAGTGGTGG 61.153 63.158 0.00 0.00 0.00 4.61
1084 1250 1.576421 GTTGCTTCTTGGGCTCGTG 59.424 57.895 0.00 0.00 0.00 4.35
1085 1251 1.600916 GGTTGCTTCTTGGGCTCGT 60.601 57.895 0.00 0.00 0.00 4.18
1351 1520 1.578206 GGTGAAGACCTTCTTGCCGC 61.578 60.000 10.67 0.00 36.73 6.53
1454 2162 2.335163 CGGTACTCCAGCGTACGTAGT 61.335 57.143 17.90 16.34 43.13 2.73
1464 2172 1.200252 CACACACTCTCGGTACTCCAG 59.800 57.143 0.00 0.00 0.00 3.86
1526 2600 9.284594 GCGCTGTCAATTTATTTCTGTTTAATA 57.715 29.630 0.00 0.00 0.00 0.98
1592 2679 5.221441 GGCATACACAGGACATGAGTATACA 60.221 44.000 9.37 0.00 41.87 2.29
1610 2697 5.482006 TCTGACATGTATATGCTGGCATAC 58.518 41.667 16.13 9.01 41.09 2.39
1615 2702 9.710900 TTTATTACTCTGACATGTATATGCTGG 57.289 33.333 0.00 0.00 37.85 4.85
1668 2759 2.536761 TTTCTTCCTTTTCGGAGCGA 57.463 45.000 0.00 0.00 44.28 4.93
1734 2825 9.574577 TGTGGAGGGGTATTATTCTCATATATT 57.425 33.333 0.00 0.00 0.00 1.28
1735 2826 9.749996 ATGTGGAGGGGTATTATTCTCATATAT 57.250 33.333 0.00 0.00 0.00 0.86
1736 2827 9.574577 AATGTGGAGGGGTATTATTCTCATATA 57.425 33.333 0.00 0.00 0.00 0.86
1737 2828 8.468547 AATGTGGAGGGGTATTATTCTCATAT 57.531 34.615 0.00 0.00 0.00 1.78
1738 2829 7.739444 AGAATGTGGAGGGGTATTATTCTCATA 59.261 37.037 0.00 0.00 30.07 2.15
1739 2830 6.564152 AGAATGTGGAGGGGTATTATTCTCAT 59.436 38.462 0.00 0.00 30.07 2.90
1740 2831 5.911178 AGAATGTGGAGGGGTATTATTCTCA 59.089 40.000 0.00 0.00 30.07 3.27
1741 2832 6.441088 AGAATGTGGAGGGGTATTATTCTC 57.559 41.667 0.00 0.00 30.07 2.87
1742 2833 6.848562 AAGAATGTGGAGGGGTATTATTCT 57.151 37.500 0.00 0.00 35.57 2.40
1743 2834 8.383175 TCATAAGAATGTGGAGGGGTATTATTC 58.617 37.037 0.00 0.00 34.50 1.75
1744 2835 8.287904 TCATAAGAATGTGGAGGGGTATTATT 57.712 34.615 0.00 0.00 34.50 1.40
1745 2836 7.888514 TCATAAGAATGTGGAGGGGTATTAT 57.111 36.000 0.00 0.00 34.50 1.28
1746 2837 7.888514 ATCATAAGAATGTGGAGGGGTATTA 57.111 36.000 0.00 0.00 34.50 0.98
1747 2838 6.786843 ATCATAAGAATGTGGAGGGGTATT 57.213 37.500 0.00 0.00 34.50 1.89
1748 2839 9.749996 ATATATCATAAGAATGTGGAGGGGTAT 57.250 33.333 0.00 0.00 34.50 2.73
1749 2840 9.213777 GATATATCATAAGAATGTGGAGGGGTA 57.786 37.037 7.89 0.00 34.50 3.69
1750 2841 7.684186 TGATATATCATAAGAATGTGGAGGGGT 59.316 37.037 11.49 0.00 34.50 4.95
1751 2842 8.094284 TGATATATCATAAGAATGTGGAGGGG 57.906 38.462 11.49 0.00 34.50 4.79
1766 2857 9.006839 CACAAGTTGCTACCATTGATATATCAT 57.993 33.333 16.06 4.18 36.56 2.45
1767 2858 7.445096 CCACAAGTTGCTACCATTGATATATCA 59.555 37.037 11.49 11.49 34.44 2.15
1768 2859 7.573843 GCCACAAGTTGCTACCATTGATATATC 60.574 40.741 5.73 5.73 0.00 1.63
1775 2866 1.888512 AGCCACAAGTTGCTACCATTG 59.111 47.619 1.81 0.00 35.69 2.82
1786 2877 4.119862 CGCTATAACATGTAGCCACAAGT 58.880 43.478 12.40 0.00 41.10 3.16
1789 2880 3.383505 AGACGCTATAACATGTAGCCACA 59.616 43.478 12.40 0.00 41.10 4.17
1790 2881 3.978687 AGACGCTATAACATGTAGCCAC 58.021 45.455 12.40 7.50 41.10 5.01
1791 2882 3.634910 TGAGACGCTATAACATGTAGCCA 59.365 43.478 12.40 3.34 41.10 4.75
1794 2885 5.440234 AGGTGAGACGCTATAACATGTAG 57.560 43.478 0.00 0.00 0.00 2.74
1814 2905 8.893727 ACAAATCATTTTATCGAACCTAGAAGG 58.106 33.333 0.00 0.00 42.49 3.46
1815 2906 9.708222 CACAAATCATTTTATCGAACCTAGAAG 57.292 33.333 0.00 0.00 0.00 2.85
1816 2907 8.673711 CCACAAATCATTTTATCGAACCTAGAA 58.326 33.333 0.00 0.00 0.00 2.10
1817 2908 7.201696 GCCACAAATCATTTTATCGAACCTAGA 60.202 37.037 0.00 0.00 0.00 2.43
1818 2909 6.912591 GCCACAAATCATTTTATCGAACCTAG 59.087 38.462 0.00 0.00 0.00 3.02
1819 2910 6.601613 AGCCACAAATCATTTTATCGAACCTA 59.398 34.615 0.00 0.00 0.00 3.08
1820 2911 5.418840 AGCCACAAATCATTTTATCGAACCT 59.581 36.000 0.00 0.00 0.00 3.50
1821 2912 5.650543 AGCCACAAATCATTTTATCGAACC 58.349 37.500 0.00 0.00 0.00 3.62
1822 2913 8.682128 TTTAGCCACAAATCATTTTATCGAAC 57.318 30.769 0.00 0.00 0.00 3.95
1823 2914 9.698309 TTTTTAGCCACAAATCATTTTATCGAA 57.302 25.926 0.00 0.00 0.00 3.71
1857 2948 8.786898 GCACATGTAAGTCATCCACATTATTAT 58.213 33.333 0.00 0.00 34.09 1.28
1858 2949 7.992608 AGCACATGTAAGTCATCCACATTATTA 59.007 33.333 0.00 0.00 34.09 0.98
1859 2950 6.830324 AGCACATGTAAGTCATCCACATTATT 59.170 34.615 0.00 0.00 34.09 1.40
1860 2951 6.359804 AGCACATGTAAGTCATCCACATTAT 58.640 36.000 0.00 0.00 34.09 1.28
1861 2952 5.744171 AGCACATGTAAGTCATCCACATTA 58.256 37.500 0.00 0.00 34.09 1.90
1862 2953 4.592942 AGCACATGTAAGTCATCCACATT 58.407 39.130 0.00 0.00 34.09 2.71
1863 2954 4.226427 AGCACATGTAAGTCATCCACAT 57.774 40.909 0.00 0.00 34.09 3.21
1864 2955 3.701205 AGCACATGTAAGTCATCCACA 57.299 42.857 0.00 0.00 34.09 4.17
1870 2961 5.122711 CACATCATCAAGCACATGTAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
1872 2963 5.247862 TCACATCATCAAGCACATGTAAGT 58.752 37.500 0.00 0.00 0.00 2.24
1903 2994 6.040729 TCCACATTTCATTTCTCAACACATGT 59.959 34.615 0.00 0.00 0.00 3.21
1919 3010 4.437930 GCAGATACAAGCACTCCACATTTC 60.438 45.833 0.00 0.00 0.00 2.17
1938 3029 9.154632 TGTAAGTCCTCCATAATATTAAGCAGA 57.845 33.333 0.00 0.00 0.00 4.26
1939 3030 9.950496 ATGTAAGTCCTCCATAATATTAAGCAG 57.050 33.333 0.00 0.00 0.00 4.24
1949 3040 4.835284 TGCACATGTAAGTCCTCCATAA 57.165 40.909 0.00 0.00 0.00 1.90
1953 3044 3.334583 TCTTGCACATGTAAGTCCTCC 57.665 47.619 0.00 0.00 38.60 4.30
1963 3054 6.753279 CCCACTACATATTTTTCTTGCACATG 59.247 38.462 0.00 0.00 0.00 3.21
1970 3061 8.329502 AGTAGAAGCCCACTACATATTTTTCTT 58.670 33.333 12.68 0.00 41.56 2.52
1978 3069 7.011499 TCAAAAAGTAGAAGCCCACTACATA 57.989 36.000 12.68 0.00 41.56 2.29
1982 3074 6.123651 TGTTTCAAAAAGTAGAAGCCCACTA 58.876 36.000 0.00 0.00 0.00 2.74
1992 3084 6.205464 TGCATCCTCTCTGTTTCAAAAAGTAG 59.795 38.462 0.00 0.00 0.00 2.57
1997 3089 4.321452 GCATGCATCCTCTCTGTTTCAAAA 60.321 41.667 14.21 0.00 0.00 2.44
2001 3093 2.641305 AGCATGCATCCTCTCTGTTTC 58.359 47.619 21.98 0.00 0.00 2.78
2016 3108 5.746307 AGTACATGTATGAAGCAAGCATG 57.254 39.130 9.18 0.00 41.67 4.06
2017 3109 6.764308 AAAGTACATGTATGAAGCAAGCAT 57.236 33.333 9.18 0.00 0.00 3.79
2018 3110 6.183360 GCTAAAGTACATGTATGAAGCAAGCA 60.183 38.462 19.29 0.00 0.00 3.91
2030 3123 3.190535 CGCCCTTTTGCTAAAGTACATGT 59.809 43.478 17.45 2.69 39.29 3.21
2043 3136 1.172180 TTCTGTGGCTCGCCCTTTTG 61.172 55.000 5.33 0.00 34.56 2.44
2059 3152 5.752955 CCGACCATTTCATTGTTGTTTTTCT 59.247 36.000 0.00 0.00 0.00 2.52
2061 3154 5.665459 TCCGACCATTTCATTGTTGTTTTT 58.335 33.333 0.00 0.00 0.00 1.94
2072 3165 4.027674 TCATTTCCTTCCGACCATTTCA 57.972 40.909 0.00 0.00 0.00 2.69
2075 3168 4.202441 CTCATCATTTCCTTCCGACCATT 58.798 43.478 0.00 0.00 0.00 3.16
2086 3179 9.383519 TCACTGTTTTATAGACTCATCATTTCC 57.616 33.333 0.00 0.00 0.00 3.13
2107 3200 6.231211 AGGTTCTTAACAGTTGGTATCACTG 58.769 40.000 0.00 0.00 37.50 3.66
2108 3201 6.435292 AGGTTCTTAACAGTTGGTATCACT 57.565 37.500 0.00 0.00 0.00 3.41
2110 3203 6.597562 ACAAGGTTCTTAACAGTTGGTATCA 58.402 36.000 0.00 0.00 33.51 2.15
2149 3242 4.165779 GTCCGCGATCAAATTCACAATTT 58.834 39.130 8.23 0.00 41.57 1.82
2154 3247 1.526986 CGTGTCCGCGATCAAATTCAC 60.527 52.381 8.23 3.98 0.00 3.18
2166 3259 0.655733 CCCATGTAATTCGTGTCCGC 59.344 55.000 0.00 0.00 0.00 5.54
2167 3260 2.303163 TCCCATGTAATTCGTGTCCG 57.697 50.000 0.00 0.00 0.00 4.79
2173 3266 6.147164 ACGCTATACATTTCCCATGTAATTCG 59.853 38.462 0.00 5.56 37.93 3.34
2181 3274 3.306088 CCGAGACGCTATACATTTCCCAT 60.306 47.826 0.00 0.00 0.00 4.00
2186 3279 2.037144 ACCCCGAGACGCTATACATTT 58.963 47.619 0.00 0.00 0.00 2.32
2192 3285 1.133853 ACTTCTACCCCGAGACGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
2193 3286 0.254178 ACTTCTACCCCGAGACGCTA 59.746 55.000 0.00 0.00 0.00 4.26
2196 3289 1.307097 CCTACTTCTACCCCGAGACG 58.693 60.000 0.00 0.00 0.00 4.18
2212 3305 0.780637 TCCACAACAATTGCCCCCTA 59.219 50.000 5.05 0.00 0.00 3.53
2213 3306 0.831711 GTCCACAACAATTGCCCCCT 60.832 55.000 5.05 0.00 0.00 4.79
2251 3344 1.376037 CCAAAGAGGTCAGGCCGAC 60.376 63.158 16.40 16.40 44.57 4.79
2252 3345 3.068881 CCAAAGAGGTCAGGCCGA 58.931 61.111 0.00 0.00 43.70 5.54
2267 3360 0.314618 TCAAACCGATCGAACGACCA 59.685 50.000 18.66 0.00 35.09 4.02
2279 3372 3.389925 TGTACTACCAAGGTCAAACCG 57.610 47.619 0.00 0.00 44.90 4.44
2280 3373 3.930848 CGATGTACTACCAAGGTCAAACC 59.069 47.826 0.00 0.00 38.99 3.27
2284 3378 2.421073 CGACGATGTACTACCAAGGTCA 59.579 50.000 0.00 0.00 0.00 4.02
2289 3383 0.099259 CGCCGACGATGTACTACCAA 59.901 55.000 0.00 0.00 43.93 3.67
2290 3384 1.026182 ACGCCGACGATGTACTACCA 61.026 55.000 0.00 0.00 43.93 3.25
2291 3385 0.590732 CACGCCGACGATGTACTACC 60.591 60.000 0.00 0.00 43.93 3.18
2293 3387 1.063006 GCACGCCGACGATGTACTA 59.937 57.895 0.00 0.00 43.93 1.82
2308 3402 1.153429 GTATCCCTGGTCCGTGCAC 60.153 63.158 6.82 6.82 0.00 4.57
2313 3407 2.032860 CTGGCAGTATCCCTGGTCCG 62.033 65.000 6.28 0.00 41.81 4.79
2314 3408 0.983378 ACTGGCAGTATCCCTGGTCC 60.983 60.000 20.61 0.00 41.81 4.46
2317 3411 2.421529 GGTTAACTGGCAGTATCCCTGG 60.422 54.545 22.37 0.00 41.81 4.45
2323 3417 3.725634 AGGAGAGGTTAACTGGCAGTAT 58.274 45.455 22.37 13.42 0.00 2.12
2325 3419 2.031495 AGGAGAGGTTAACTGGCAGT 57.969 50.000 15.88 15.88 0.00 4.40
2326 3420 2.832129 TGTAGGAGAGGTTAACTGGCAG 59.168 50.000 14.16 14.16 0.00 4.85
2328 3422 3.514309 TCTTGTAGGAGAGGTTAACTGGC 59.486 47.826 5.42 0.00 0.00 4.85
2329 3423 4.527038 TGTCTTGTAGGAGAGGTTAACTGG 59.473 45.833 5.42 0.00 0.00 4.00
2332 3426 7.040494 GGTAATGTCTTGTAGGAGAGGTTAAC 58.960 42.308 0.00 0.00 0.00 2.01
2340 3434 3.028850 TCCCGGTAATGTCTTGTAGGAG 58.971 50.000 0.00 0.00 0.00 3.69
2341 3435 3.104519 TCCCGGTAATGTCTTGTAGGA 57.895 47.619 0.00 0.00 0.00 2.94
2343 3437 7.663827 TGTATATTCCCGGTAATGTCTTGTAG 58.336 38.462 1.90 0.00 0.00 2.74
2345 3439 6.488769 TGTATATTCCCGGTAATGTCTTGT 57.511 37.500 1.90 0.00 0.00 3.16
2348 3442 8.877195 ACTTTATGTATATTCCCGGTAATGTCT 58.123 33.333 1.90 0.00 0.00 3.41
2356 3450 9.938280 TCTTTATCACTTTATGTATATTCCCGG 57.062 33.333 0.00 0.00 0.00 5.73
2404 3499 9.325198 CTTTCCCTTTTTAGTTTATGCTTTGTT 57.675 29.630 0.00 0.00 0.00 2.83
2405 3500 8.700973 TCTTTCCCTTTTTAGTTTATGCTTTGT 58.299 29.630 0.00 0.00 0.00 2.83
2406 3501 9.541143 TTCTTTCCCTTTTTAGTTTATGCTTTG 57.459 29.630 0.00 0.00 0.00 2.77
2408 3503 9.764363 CTTTCTTTCCCTTTTTAGTTTATGCTT 57.236 29.630 0.00 0.00 0.00 3.91
2409 3504 8.367911 CCTTTCTTTCCCTTTTTAGTTTATGCT 58.632 33.333 0.00 0.00 0.00 3.79
2410 3505 7.117812 GCCTTTCTTTCCCTTTTTAGTTTATGC 59.882 37.037 0.00 0.00 0.00 3.14
2411 3506 7.328493 CGCCTTTCTTTCCCTTTTTAGTTTATG 59.672 37.037 0.00 0.00 0.00 1.90
2412 3507 7.231925 TCGCCTTTCTTTCCCTTTTTAGTTTAT 59.768 33.333 0.00 0.00 0.00 1.40
2413 3508 6.546772 TCGCCTTTCTTTCCCTTTTTAGTTTA 59.453 34.615 0.00 0.00 0.00 2.01
2414 3509 5.361571 TCGCCTTTCTTTCCCTTTTTAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
2415 3510 4.891168 TCGCCTTTCTTTCCCTTTTTAGTT 59.109 37.500 0.00 0.00 0.00 2.24
2416 3511 4.277672 GTCGCCTTTCTTTCCCTTTTTAGT 59.722 41.667 0.00 0.00 0.00 2.24
2417 3512 4.612939 CGTCGCCTTTCTTTCCCTTTTTAG 60.613 45.833 0.00 0.00 0.00 1.85
2418 3513 3.251487 CGTCGCCTTTCTTTCCCTTTTTA 59.749 43.478 0.00 0.00 0.00 1.52
2419 3514 2.034179 CGTCGCCTTTCTTTCCCTTTTT 59.966 45.455 0.00 0.00 0.00 1.94
2420 3515 1.607148 CGTCGCCTTTCTTTCCCTTTT 59.393 47.619 0.00 0.00 0.00 2.27
2421 3516 1.235724 CGTCGCCTTTCTTTCCCTTT 58.764 50.000 0.00 0.00 0.00 3.11
2422 3517 0.108019 ACGTCGCCTTTCTTTCCCTT 59.892 50.000 0.00 0.00 0.00 3.95
2423 3518 0.602905 CACGTCGCCTTTCTTTCCCT 60.603 55.000 0.00 0.00 0.00 4.20
2424 3519 0.883370 ACACGTCGCCTTTCTTTCCC 60.883 55.000 0.00 0.00 0.00 3.97
2425 3520 1.458445 GTACACGTCGCCTTTCTTTCC 59.542 52.381 0.00 0.00 0.00 3.13
2426 3521 2.097056 GTGTACACGTCGCCTTTCTTTC 60.097 50.000 10.84 0.00 0.00 2.62
2427 3522 1.862827 GTGTACACGTCGCCTTTCTTT 59.137 47.619 10.84 0.00 0.00 2.52
2428 3523 1.068127 AGTGTACACGTCGCCTTTCTT 59.932 47.619 19.93 0.00 36.20 2.52
2429 3524 0.672342 AGTGTACACGTCGCCTTTCT 59.328 50.000 19.93 0.00 36.20 2.52
2430 3525 1.494824 AAGTGTACACGTCGCCTTTC 58.505 50.000 19.93 0.00 36.20 2.62
2431 3526 1.944032 AAAGTGTACACGTCGCCTTT 58.056 45.000 19.93 11.01 36.20 3.11
2432 3527 1.944032 AAAAGTGTACACGTCGCCTT 58.056 45.000 19.93 5.63 36.20 4.35
2433 3528 1.944032 AAAAAGTGTACACGTCGCCT 58.056 45.000 19.93 0.00 36.20 5.52
2451 3546 8.672815 CAATAAAACTTTGCTTCCCTTCAAAAA 58.327 29.630 0.00 0.00 32.55 1.94
2452 3547 7.201688 GCAATAAAACTTTGCTTCCCTTCAAAA 60.202 33.333 1.36 0.00 44.71 2.44
2453 3548 6.259829 GCAATAAAACTTTGCTTCCCTTCAAA 59.740 34.615 1.36 0.00 44.71 2.69
2454 3549 5.757808 GCAATAAAACTTTGCTTCCCTTCAA 59.242 36.000 1.36 0.00 44.71 2.69
2455 3550 5.296748 GCAATAAAACTTTGCTTCCCTTCA 58.703 37.500 1.36 0.00 44.71 3.02
2456 3551 5.845985 GCAATAAAACTTTGCTTCCCTTC 57.154 39.130 1.36 0.00 44.71 3.46
2464 3559 8.682827 CGCACACGTAAGCAATAAAACTTTGC 62.683 42.308 11.32 0.27 41.13 3.68
2465 3560 5.385918 CGCACACGTAAGCAATAAAACTTTG 60.386 40.000 11.32 0.00 45.62 2.77
2466 3561 4.673311 CGCACACGTAAGCAATAAAACTTT 59.327 37.500 11.32 0.00 45.62 2.66
2467 3562 4.215965 CGCACACGTAAGCAATAAAACTT 58.784 39.130 11.32 0.00 45.62 2.66
2468 3563 3.805823 CGCACACGTAAGCAATAAAACT 58.194 40.909 11.32 0.00 45.62 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.