Multiple sequence alignment - TraesCS1A01G374200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G374200 chr1A 100.000 2291 0 0 1 2291 549636965 549639255 0.000000e+00 4231
1 TraesCS1A01G374200 chr1A 94.432 449 22 2 1843 2291 553758246 553758691 0.000000e+00 688
2 TraesCS1A01G374200 chr1A 89.435 549 31 4 1770 2291 579724824 579725372 0.000000e+00 667
3 TraesCS1A01G374200 chr1A 87.477 551 25 14 1769 2291 513687965 513688499 1.520000e-166 595
4 TraesCS1A01G374200 chr1A 83.865 564 36 20 229 770 549601646 549601116 9.510000e-134 486
5 TraesCS1A01G374200 chr1A 83.271 538 54 23 883 1399 549666363 549666885 1.600000e-126 462
6 TraesCS1A01G374200 chr1B 91.912 952 64 9 566 1512 626594652 626595595 0.000000e+00 1319
7 TraesCS1A01G374200 chr1B 85.948 1224 88 35 202 1383 626508084 626506903 0.000000e+00 1230
8 TraesCS1A01G374200 chr1B 87.150 428 35 10 888 1298 626600886 626601310 3.450000e-128 468
9 TraesCS1A01G374200 chr1D 86.738 1033 79 40 566 1554 456132034 456133052 0.000000e+00 1096
10 TraesCS1A01G374200 chr1D 85.867 467 41 14 883 1331 456199660 456200119 7.410000e-130 473
11 TraesCS1A01G374200 chr1D 88.780 205 17 6 1568 1769 460919524 460919323 1.760000e-61 246
12 TraesCS1A01G374200 chr1D 86.275 204 22 5 1568 1769 412073025 412073224 1.380000e-52 217
13 TraesCS1A01G374200 chr1D 85.581 215 20 6 1568 1775 444732904 444732694 4.960000e-52 215
14 TraesCS1A01G374200 chr3A 92.952 525 30 4 1768 2291 673862458 673861940 0.000000e+00 758
15 TraesCS1A01G374200 chr3A 88.768 552 32 7 1768 2291 702059355 702059904 0.000000e+00 649
16 TraesCS1A01G374200 chr3A 94.474 380 19 2 1901 2279 41124420 41124798 3.280000e-163 584
17 TraesCS1A01G374200 chr3A 87.269 487 32 7 1769 2227 50385283 50385767 1.560000e-146 529
18 TraesCS1A01G374200 chr3A 84.964 552 28 16 1768 2291 742212468 742212992 2.030000e-140 508
19 TraesCS1A01G374200 chr5B 90.217 552 24 4 1768 2291 535220089 535220638 0.000000e+00 693
20 TraesCS1A01G374200 chr3B 90.018 551 25 13 1769 2290 10291184 10291733 0.000000e+00 686
21 TraesCS1A01G374200 chr3B 93.367 392 23 3 1901 2290 780541516 780541126 5.490000e-161 577
22 TraesCS1A01G374200 chr7A 87.296 551 26 12 1769 2291 115377029 115377563 7.050000e-165 590
23 TraesCS1A01G374200 chr7A 88.500 400 17 6 1770 2141 104639592 104639194 7.460000e-125 457
24 TraesCS1A01G374200 chr5A 93.878 392 22 2 1901 2291 131784578 131784188 7.050000e-165 590
25 TraesCS1A01G374200 chr7B 92.857 392 24 4 1901 2290 729236012 729236401 1.190000e-157 566
26 TraesCS1A01G374200 chrUn 87.576 491 30 8 1769 2230 150118014 150117526 7.200000e-150 540
27 TraesCS1A01G374200 chr4D 86.498 237 32 0 1767 2003 60178519 60178755 6.280000e-66 261
28 TraesCS1A01G374200 chr4D 86.765 204 21 5 1568 1768 505256182 505256382 2.960000e-54 222
29 TraesCS1A01G374200 chr7D 87.192 203 23 3 1568 1769 422616996 422617196 6.370000e-56 228
30 TraesCS1A01G374200 chr6D 86.829 205 22 4 1568 1769 123124752 123124550 8.240000e-55 224
31 TraesCS1A01G374200 chr2D 86.538 208 21 5 1565 1769 547148612 547148409 2.960000e-54 222
32 TraesCS1A01G374200 chr5D 87.374 198 17 7 1568 1761 196425707 196425900 1.070000e-53 220
33 TraesCS1A01G374200 chr2B 86.765 204 17 8 1567 1769 146967808 146967614 3.830000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G374200 chr1A 549636965 549639255 2290 False 4231 4231 100.000 1 2291 1 chr1A.!!$F2 2290
1 TraesCS1A01G374200 chr1A 579724824 579725372 548 False 667 667 89.435 1770 2291 1 chr1A.!!$F5 521
2 TraesCS1A01G374200 chr1A 513687965 513688499 534 False 595 595 87.477 1769 2291 1 chr1A.!!$F1 522
3 TraesCS1A01G374200 chr1A 549601116 549601646 530 True 486 486 83.865 229 770 1 chr1A.!!$R1 541
4 TraesCS1A01G374200 chr1A 549666363 549666885 522 False 462 462 83.271 883 1399 1 chr1A.!!$F3 516
5 TraesCS1A01G374200 chr1B 626594652 626595595 943 False 1319 1319 91.912 566 1512 1 chr1B.!!$F1 946
6 TraesCS1A01G374200 chr1B 626506903 626508084 1181 True 1230 1230 85.948 202 1383 1 chr1B.!!$R1 1181
7 TraesCS1A01G374200 chr1D 456132034 456133052 1018 False 1096 1096 86.738 566 1554 1 chr1D.!!$F2 988
8 TraesCS1A01G374200 chr3A 673861940 673862458 518 True 758 758 92.952 1768 2291 1 chr3A.!!$R1 523
9 TraesCS1A01G374200 chr3A 702059355 702059904 549 False 649 649 88.768 1768 2291 1 chr3A.!!$F3 523
10 TraesCS1A01G374200 chr3A 742212468 742212992 524 False 508 508 84.964 1768 2291 1 chr3A.!!$F4 523
11 TraesCS1A01G374200 chr5B 535220089 535220638 549 False 693 693 90.217 1768 2291 1 chr5B.!!$F1 523
12 TraesCS1A01G374200 chr3B 10291184 10291733 549 False 686 686 90.018 1769 2290 1 chr3B.!!$F1 521
13 TraesCS1A01G374200 chr7A 115377029 115377563 534 False 590 590 87.296 1769 2291 1 chr7A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.037697 TGTGACGCGGTTAGCTGAAT 60.038 50.0 12.47 0.0 45.59 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1717 1831 0.1792 GTACAGGCCGCATTTCAACG 60.179 55.0 0.0 0.0 0.0 4.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.027419 AAGAAGGCTGCAACAGGTC 57.973 52.632 0.50 0.00 31.21 3.85
19 20 0.538287 AAGAAGGCTGCAACAGGTCC 60.538 55.000 0.50 0.00 31.21 4.46
20 21 1.228245 GAAGGCTGCAACAGGTCCA 60.228 57.895 0.50 0.00 31.21 4.02
21 22 0.610232 GAAGGCTGCAACAGGTCCAT 60.610 55.000 0.50 0.00 31.21 3.41
22 23 0.610232 AAGGCTGCAACAGGTCCATC 60.610 55.000 0.50 0.00 31.21 3.51
23 24 2.048603 GGCTGCAACAGGTCCATCC 61.049 63.158 0.50 0.00 31.21 3.51
25 26 0.610232 GCTGCAACAGGTCCATCCTT 60.610 55.000 0.00 0.00 45.67 3.36
26 27 1.171308 CTGCAACAGGTCCATCCTTG 58.829 55.000 0.00 0.00 45.67 3.61
27 28 0.895100 TGCAACAGGTCCATCCTTGC 60.895 55.000 0.00 4.27 45.67 4.01
28 29 0.895100 GCAACAGGTCCATCCTTGCA 60.895 55.000 5.90 0.00 45.67 4.08
29 30 1.619654 CAACAGGTCCATCCTTGCAA 58.380 50.000 0.00 0.00 45.67 4.08
30 31 1.270550 CAACAGGTCCATCCTTGCAAC 59.729 52.381 0.00 0.00 45.67 4.17
31 32 0.251341 ACAGGTCCATCCTTGCAACC 60.251 55.000 0.00 0.00 45.67 3.77
32 33 0.251297 CAGGTCCATCCTTGCAACCA 60.251 55.000 0.00 0.00 45.67 3.67
33 34 0.251341 AGGTCCATCCTTGCAACCAC 60.251 55.000 0.00 0.00 45.67 4.16
34 35 0.539438 GGTCCATCCTTGCAACCACA 60.539 55.000 0.00 0.00 31.09 4.17
35 36 0.598065 GTCCATCCTTGCAACCACAC 59.402 55.000 0.00 0.00 0.00 3.82
36 37 0.184692 TCCATCCTTGCAACCACACA 59.815 50.000 0.00 0.00 0.00 3.72
37 38 1.039068 CCATCCTTGCAACCACACAA 58.961 50.000 0.00 0.00 0.00 3.33
38 39 1.000060 CCATCCTTGCAACCACACAAG 60.000 52.381 0.00 0.00 42.35 3.16
42 43 2.497107 CTTGCAACCACACAAGGAAG 57.503 50.000 0.00 0.00 39.67 3.46
43 44 2.023673 CTTGCAACCACACAAGGAAGA 58.976 47.619 0.00 0.00 39.67 2.87
44 45 2.363306 TGCAACCACACAAGGAAGAT 57.637 45.000 0.00 0.00 0.00 2.40
45 46 1.955778 TGCAACCACACAAGGAAGATG 59.044 47.619 0.00 0.00 0.00 2.90
46 47 1.270550 GCAACCACACAAGGAAGATGG 59.729 52.381 0.00 0.00 36.46 3.51
47 48 1.270550 CAACCACACAAGGAAGATGGC 59.729 52.381 0.00 0.00 33.46 4.40
48 49 0.251341 ACCACACAAGGAAGATGGCC 60.251 55.000 0.00 0.00 33.46 5.36
49 50 1.308069 CCACACAAGGAAGATGGCCG 61.308 60.000 0.00 0.00 0.00 6.13
50 51 0.321564 CACACAAGGAAGATGGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
51 52 0.400213 ACACAAGGAAGATGGCCGAA 59.600 50.000 0.00 0.00 0.00 4.30
52 53 1.004745 ACACAAGGAAGATGGCCGAAT 59.995 47.619 0.00 0.00 0.00 3.34
53 54 1.402968 CACAAGGAAGATGGCCGAATG 59.597 52.381 0.00 0.00 0.00 2.67
54 55 1.281867 ACAAGGAAGATGGCCGAATGA 59.718 47.619 0.00 0.00 0.00 2.57
55 56 1.672881 CAAGGAAGATGGCCGAATGAC 59.327 52.381 0.00 0.00 0.00 3.06
56 57 0.911769 AGGAAGATGGCCGAATGACA 59.088 50.000 0.00 0.00 0.00 3.58
57 58 1.134280 AGGAAGATGGCCGAATGACAG 60.134 52.381 0.00 0.00 0.00 3.51
58 59 1.134401 GGAAGATGGCCGAATGACAGA 60.134 52.381 0.00 0.00 0.00 3.41
59 60 2.486191 GGAAGATGGCCGAATGACAGAT 60.486 50.000 0.00 0.00 0.00 2.90
60 61 2.540265 AGATGGCCGAATGACAGATC 57.460 50.000 0.00 0.00 0.00 2.75
61 62 1.143305 GATGGCCGAATGACAGATCG 58.857 55.000 0.00 6.48 38.74 3.69
62 63 0.465705 ATGGCCGAATGACAGATCGT 59.534 50.000 0.00 0.00 37.36 3.73
63 64 0.249120 TGGCCGAATGACAGATCGTT 59.751 50.000 0.00 0.00 37.36 3.85
64 65 0.931005 GGCCGAATGACAGATCGTTC 59.069 55.000 11.19 0.06 44.39 3.95
73 74 7.721286 GAATGACAGATCGTTCATTAGGATT 57.279 36.000 19.12 3.70 46.27 3.01
74 75 8.147642 GAATGACAGATCGTTCATTAGGATTT 57.852 34.615 19.12 3.15 46.27 2.17
75 76 9.261180 GAATGACAGATCGTTCATTAGGATTTA 57.739 33.333 19.12 0.00 46.27 1.40
76 77 8.824159 ATGACAGATCGTTCATTAGGATTTAG 57.176 34.615 6.34 0.00 31.74 1.85
77 78 7.210174 TGACAGATCGTTCATTAGGATTTAGG 58.790 38.462 0.00 0.00 31.74 2.69
78 79 6.525629 ACAGATCGTTCATTAGGATTTAGGG 58.474 40.000 0.00 0.00 31.74 3.53
79 80 5.934625 CAGATCGTTCATTAGGATTTAGGGG 59.065 44.000 0.00 0.00 31.74 4.79
80 81 4.081322 TCGTTCATTAGGATTTAGGGGC 57.919 45.455 0.00 0.00 0.00 5.80
81 82 3.146847 CGTTCATTAGGATTTAGGGGCC 58.853 50.000 0.00 0.00 0.00 5.80
82 83 3.434453 CGTTCATTAGGATTTAGGGGCCA 60.434 47.826 4.39 0.00 0.00 5.36
83 84 4.740902 GTTCATTAGGATTTAGGGGCCAT 58.259 43.478 4.39 0.00 0.00 4.40
84 85 4.387026 TCATTAGGATTTAGGGGCCATG 57.613 45.455 4.39 0.00 0.00 3.66
85 86 3.075882 TCATTAGGATTTAGGGGCCATGG 59.924 47.826 7.63 7.63 0.00 3.66
86 87 2.523841 TAGGATTTAGGGGCCATGGA 57.476 50.000 18.40 0.00 0.00 3.41
87 88 1.619298 AGGATTTAGGGGCCATGGAA 58.381 50.000 18.40 0.00 0.00 3.53
88 89 1.217942 AGGATTTAGGGGCCATGGAAC 59.782 52.381 18.40 7.18 0.00 3.62
107 108 7.987750 TGGAACATACTGTAATTAGCAAACA 57.012 32.000 0.00 0.00 0.00 2.83
108 109 8.039603 TGGAACATACTGTAATTAGCAAACAG 57.960 34.615 4.16 4.16 44.89 3.16
116 117 6.847956 TGTAATTAGCAAACAGTACAACGT 57.152 33.333 0.00 0.00 0.00 3.99
117 118 7.249186 TGTAATTAGCAAACAGTACAACGTT 57.751 32.000 0.00 0.00 0.00 3.99
118 119 7.127042 TGTAATTAGCAAACAGTACAACGTTG 58.873 34.615 26.20 26.20 0.00 4.10
119 120 5.744666 ATTAGCAAACAGTACAACGTTGT 57.255 34.783 33.99 33.99 44.86 3.32
120 121 3.398954 AGCAAACAGTACAACGTTGTG 57.601 42.857 37.43 25.51 42.31 3.33
121 122 2.745281 AGCAAACAGTACAACGTTGTGT 59.255 40.909 37.43 26.12 42.31 3.72
122 123 2.843643 GCAAACAGTACAACGTTGTGTG 59.156 45.455 37.43 32.95 42.31 3.82
123 124 3.425094 GCAAACAGTACAACGTTGTGTGA 60.425 43.478 37.43 19.83 42.31 3.58
124 125 4.331137 CAAACAGTACAACGTTGTGTGAG 58.669 43.478 37.43 26.31 42.31 3.51
125 126 3.241067 ACAGTACAACGTTGTGTGAGT 57.759 42.857 37.43 26.87 42.31 3.41
126 127 2.927477 ACAGTACAACGTTGTGTGAGTG 59.073 45.455 37.43 30.68 42.31 3.51
127 128 2.927477 CAGTACAACGTTGTGTGAGTGT 59.073 45.455 37.43 16.32 42.31 3.55
128 129 2.927477 AGTACAACGTTGTGTGAGTGTG 59.073 45.455 37.43 9.51 42.31 3.82
129 130 2.087501 ACAACGTTGTGTGAGTGTGA 57.912 45.000 31.87 0.00 40.49 3.58
130 131 1.730064 ACAACGTTGTGTGAGTGTGAC 59.270 47.619 31.87 0.00 40.49 3.67
131 132 0.996462 AACGTTGTGTGAGTGTGACG 59.004 50.000 0.00 0.00 36.65 4.35
132 133 1.272715 CGTTGTGTGAGTGTGACGC 59.727 57.895 0.00 0.00 0.00 5.19
133 134 1.272715 GTTGTGTGAGTGTGACGCG 59.727 57.895 3.53 3.53 0.00 6.01
134 135 1.880796 TTGTGTGAGTGTGACGCGG 60.881 57.895 12.47 0.00 0.00 6.46
135 136 2.279252 GTGTGAGTGTGACGCGGT 60.279 61.111 12.47 0.00 0.00 5.68
136 137 1.881252 GTGTGAGTGTGACGCGGTT 60.881 57.895 12.47 0.00 0.00 4.44
137 138 0.595567 GTGTGAGTGTGACGCGGTTA 60.596 55.000 12.47 0.00 0.00 2.85
138 139 0.318360 TGTGAGTGTGACGCGGTTAG 60.318 55.000 12.47 0.00 0.00 2.34
139 140 1.372499 TGAGTGTGACGCGGTTAGC 60.372 57.895 12.47 0.00 43.95 3.09
140 141 1.080705 GAGTGTGACGCGGTTAGCT 60.081 57.895 12.47 2.31 45.59 3.32
141 142 1.344942 GAGTGTGACGCGGTTAGCTG 61.345 60.000 12.47 0.00 45.59 4.24
142 143 1.372499 GTGTGACGCGGTTAGCTGA 60.372 57.895 12.47 0.00 45.59 4.26
143 144 0.942410 GTGTGACGCGGTTAGCTGAA 60.942 55.000 12.47 0.00 45.59 3.02
144 145 0.037697 TGTGACGCGGTTAGCTGAAT 60.038 50.000 12.47 0.00 45.59 2.57
145 146 1.202817 TGTGACGCGGTTAGCTGAATA 59.797 47.619 12.47 0.00 45.59 1.75
146 147 2.264813 GTGACGCGGTTAGCTGAATAA 58.735 47.619 12.47 0.00 45.59 1.40
147 148 2.281762 GTGACGCGGTTAGCTGAATAAG 59.718 50.000 12.47 0.00 45.59 1.73
148 149 2.164827 TGACGCGGTTAGCTGAATAAGA 59.835 45.455 12.47 0.00 45.59 2.10
149 150 3.181479 TGACGCGGTTAGCTGAATAAGAT 60.181 43.478 12.47 0.00 45.59 2.40
150 151 3.123804 ACGCGGTTAGCTGAATAAGATG 58.876 45.455 12.47 0.00 45.59 2.90
151 152 3.181479 ACGCGGTTAGCTGAATAAGATGA 60.181 43.478 12.47 0.00 45.59 2.92
152 153 3.182572 CGCGGTTAGCTGAATAAGATGAC 59.817 47.826 0.00 0.00 45.59 3.06
153 154 3.495001 GCGGTTAGCTGAATAAGATGACC 59.505 47.826 0.00 0.00 45.20 4.02
154 155 4.740934 GCGGTTAGCTGAATAAGATGACCT 60.741 45.833 0.00 0.00 46.18 3.85
155 156 4.747108 CGGTTAGCTGAATAAGATGACCTG 59.253 45.833 0.00 0.00 46.18 4.00
156 157 5.059833 GGTTAGCTGAATAAGATGACCTGG 58.940 45.833 0.00 0.00 45.21 4.45
157 158 3.853355 AGCTGAATAAGATGACCTGGG 57.147 47.619 0.00 0.00 0.00 4.45
158 159 3.387962 AGCTGAATAAGATGACCTGGGA 58.612 45.455 0.00 0.00 0.00 4.37
159 160 3.782523 AGCTGAATAAGATGACCTGGGAA 59.217 43.478 0.00 0.00 0.00 3.97
160 161 4.228210 AGCTGAATAAGATGACCTGGGAAA 59.772 41.667 0.00 0.00 0.00 3.13
161 162 4.578105 GCTGAATAAGATGACCTGGGAAAG 59.422 45.833 0.00 0.00 0.00 2.62
162 163 5.749462 CTGAATAAGATGACCTGGGAAAGT 58.251 41.667 0.00 0.00 0.00 2.66
163 164 5.500234 TGAATAAGATGACCTGGGAAAGTG 58.500 41.667 0.00 0.00 0.00 3.16
164 165 5.014123 TGAATAAGATGACCTGGGAAAGTGT 59.986 40.000 0.00 0.00 0.00 3.55
165 166 3.425162 AAGATGACCTGGGAAAGTGTC 57.575 47.619 0.00 0.00 0.00 3.67
166 167 2.338809 AGATGACCTGGGAAAGTGTCA 58.661 47.619 0.00 0.00 39.14 3.58
167 168 2.915604 AGATGACCTGGGAAAGTGTCAT 59.084 45.455 3.83 3.83 43.60 3.06
168 169 3.331889 AGATGACCTGGGAAAGTGTCATT 59.668 43.478 5.56 0.00 42.26 2.57
169 170 2.862541 TGACCTGGGAAAGTGTCATTG 58.137 47.619 0.00 0.00 33.66 2.82
170 171 1.541588 GACCTGGGAAAGTGTCATTGC 59.458 52.381 0.00 0.00 0.00 3.56
171 172 0.890683 CCTGGGAAAGTGTCATTGCC 59.109 55.000 0.00 0.00 38.62 4.52
172 173 1.619654 CTGGGAAAGTGTCATTGCCA 58.380 50.000 0.17 0.17 44.71 4.92
173 174 1.270550 CTGGGAAAGTGTCATTGCCAC 59.729 52.381 0.00 0.00 42.46 5.01
174 175 0.603065 GGGAAAGTGTCATTGCCACC 59.397 55.000 0.00 0.00 38.10 4.61
175 176 1.327303 GGAAAGTGTCATTGCCACCA 58.673 50.000 0.00 0.00 33.20 4.17
176 177 1.895131 GGAAAGTGTCATTGCCACCAT 59.105 47.619 0.00 0.00 33.20 3.55
177 178 2.094545 GGAAAGTGTCATTGCCACCATC 60.095 50.000 0.00 0.00 33.20 3.51
178 179 1.549203 AAGTGTCATTGCCACCATCC 58.451 50.000 0.00 0.00 33.20 3.51
179 180 0.700564 AGTGTCATTGCCACCATCCT 59.299 50.000 0.00 0.00 33.20 3.24
180 181 1.076024 AGTGTCATTGCCACCATCCTT 59.924 47.619 0.00 0.00 33.20 3.36
181 182 1.895131 GTGTCATTGCCACCATCCTTT 59.105 47.619 0.00 0.00 0.00 3.11
182 183 2.299867 GTGTCATTGCCACCATCCTTTT 59.700 45.455 0.00 0.00 0.00 2.27
183 184 2.971330 TGTCATTGCCACCATCCTTTTT 59.029 40.909 0.00 0.00 0.00 1.94
210 211 1.463674 GGGTTGCCACCATTCTGTAG 58.536 55.000 9.52 0.00 46.43 2.74
211 212 0.811281 GGTTGCCACCATTCTGTAGC 59.189 55.000 1.17 0.00 43.61 3.58
264 273 2.688507 AGAACAGTATGCGTTGTCCAG 58.311 47.619 0.00 0.00 42.53 3.86
269 278 3.447586 ACAGTATGCGTTGTCCAGATACT 59.552 43.478 0.00 0.00 42.53 2.12
270 279 4.081642 ACAGTATGCGTTGTCCAGATACTT 60.082 41.667 0.00 0.00 42.53 2.24
312 325 7.373493 GCATAATACTGCAAATGGAAGCTATT 58.627 34.615 0.00 0.00 41.87 1.73
313 326 8.514594 GCATAATACTGCAAATGGAAGCTATTA 58.485 33.333 0.00 0.00 41.87 0.98
316 329 5.824904 ACTGCAAATGGAAGCTATTAGTG 57.175 39.130 0.00 0.00 0.00 2.74
328 344 5.365021 AGCTATTAGTGTGAGAGGCAAAT 57.635 39.130 0.00 0.00 0.00 2.32
331 347 5.220739 GCTATTAGTGTGAGAGGCAAATGTG 60.221 44.000 0.00 0.00 0.00 3.21
333 349 2.224606 AGTGTGAGAGGCAAATGTGTG 58.775 47.619 0.00 0.00 0.00 3.82
334 350 1.949525 GTGTGAGAGGCAAATGTGTGT 59.050 47.619 0.00 0.00 0.00 3.72
335 351 3.138304 GTGTGAGAGGCAAATGTGTGTA 58.862 45.455 0.00 0.00 0.00 2.90
336 352 3.058914 GTGTGAGAGGCAAATGTGTGTAC 60.059 47.826 0.00 0.00 0.00 2.90
337 353 3.181455 TGTGAGAGGCAAATGTGTGTACT 60.181 43.478 0.00 0.00 0.00 2.73
338 354 4.039852 TGTGAGAGGCAAATGTGTGTACTA 59.960 41.667 0.00 0.00 0.00 1.82
339 355 4.627467 GTGAGAGGCAAATGTGTGTACTAG 59.373 45.833 0.00 0.00 0.00 2.57
340 356 4.526650 TGAGAGGCAAATGTGTGTACTAGA 59.473 41.667 0.00 0.00 0.00 2.43
341 357 5.187772 TGAGAGGCAAATGTGTGTACTAGAT 59.812 40.000 0.00 0.00 0.00 1.98
342 358 5.665459 AGAGGCAAATGTGTGTACTAGATC 58.335 41.667 0.00 0.00 0.00 2.75
343 359 4.433615 AGGCAAATGTGTGTACTAGATCG 58.566 43.478 0.00 0.00 0.00 3.69
354 370 4.023878 GTGTACTAGATCGGATCCAGTGTC 60.024 50.000 23.58 17.44 33.36 3.67
360 376 0.895530 TCGGATCCAGTGTCCTGAAC 59.104 55.000 13.41 0.00 41.50 3.18
394 422 0.251922 ACATGCAGGCCTGAACCAAT 60.252 50.000 37.21 16.92 0.00 3.16
412 440 8.783093 TGAACCAATCACTTACATTTCTAACTG 58.217 33.333 0.00 0.00 31.50 3.16
455 483 8.556213 TTACTACCACAGATGTTTTATGTTCC 57.444 34.615 0.00 0.00 0.00 3.62
464 492 5.543790 AGATGTTTTATGTTCCCTTGGCTTT 59.456 36.000 0.00 0.00 0.00 3.51
465 493 4.954875 TGTTTTATGTTCCCTTGGCTTTG 58.045 39.130 0.00 0.00 0.00 2.77
466 494 3.676291 TTTATGTTCCCTTGGCTTTGC 57.324 42.857 0.00 0.00 0.00 3.68
467 495 1.173043 TATGTTCCCTTGGCTTTGCG 58.827 50.000 0.00 0.00 0.00 4.85
487 515 2.269172 GAAGCAACCGGACTAACTAGC 58.731 52.381 9.46 0.00 0.00 3.42
489 517 1.831736 AGCAACCGGACTAACTAGCAT 59.168 47.619 9.46 0.00 0.00 3.79
507 535 3.005155 AGCATCAAAGCAACTGAACCTTC 59.995 43.478 0.00 0.00 36.85 3.46
509 537 4.500375 GCATCAAAGCAACTGAACCTTCTT 60.500 41.667 0.00 0.00 0.00 2.52
510 538 5.594926 CATCAAAGCAACTGAACCTTCTTT 58.405 37.500 0.00 0.00 0.00 2.52
512 540 5.650543 TCAAAGCAACTGAACCTTCTTTTC 58.349 37.500 0.00 0.00 0.00 2.29
513 541 3.971032 AGCAACTGAACCTTCTTTTCG 57.029 42.857 0.00 0.00 0.00 3.46
515 543 3.065371 AGCAACTGAACCTTCTTTTCGTG 59.935 43.478 0.00 0.00 0.00 4.35
516 544 3.792124 GCAACTGAACCTTCTTTTCGTGG 60.792 47.826 0.00 0.00 0.00 4.94
517 545 3.277142 ACTGAACCTTCTTTTCGTGGT 57.723 42.857 0.00 0.00 0.00 4.16
518 546 2.943033 ACTGAACCTTCTTTTCGTGGTG 59.057 45.455 0.00 0.00 32.53 4.17
519 547 1.673920 TGAACCTTCTTTTCGTGGTGC 59.326 47.619 0.00 0.00 32.53 5.01
520 548 1.947456 GAACCTTCTTTTCGTGGTGCT 59.053 47.619 0.00 0.00 32.53 4.40
521 549 2.052782 ACCTTCTTTTCGTGGTGCTT 57.947 45.000 0.00 0.00 0.00 3.91
522 550 2.375146 ACCTTCTTTTCGTGGTGCTTT 58.625 42.857 0.00 0.00 0.00 3.51
523 551 2.758423 ACCTTCTTTTCGTGGTGCTTTT 59.242 40.909 0.00 0.00 0.00 2.27
524 552 3.949113 ACCTTCTTTTCGTGGTGCTTTTA 59.051 39.130 0.00 0.00 0.00 1.52
525 553 4.399934 ACCTTCTTTTCGTGGTGCTTTTAA 59.600 37.500 0.00 0.00 0.00 1.52
526 554 4.976116 CCTTCTTTTCGTGGTGCTTTTAAG 59.024 41.667 0.00 0.00 0.00 1.85
644 676 1.724973 GCTTTCAGCGCGACTAAAACC 60.725 52.381 12.10 0.00 0.00 3.27
646 678 1.286354 TTCAGCGCGACTAAAACCGG 61.286 55.000 12.10 0.00 0.00 5.28
650 682 2.736682 CGCGACTAAAACCGGCCAG 61.737 63.158 0.00 0.00 0.00 4.85
725 761 3.201487 TGGACCATTTCTGCTCATCATCT 59.799 43.478 0.00 0.00 0.00 2.90
736 772 4.196971 TGCTCATCATCTTGTCTTCCATG 58.803 43.478 0.00 0.00 0.00 3.66
742 778 2.839486 TCTTGTCTTCCATGAACGCT 57.161 45.000 0.00 0.00 0.00 5.07
750 786 2.401583 TCCATGAACGCTATGTGCTT 57.598 45.000 0.00 0.00 40.11 3.91
760 796 2.995939 CGCTATGTGCTTCTGACAAGAA 59.004 45.455 0.00 0.00 40.49 2.52
825 875 1.404391 GCACTAGCTAGCCACGTCTAA 59.596 52.381 20.91 0.00 37.91 2.10
842 892 3.185391 GTCTAAACTTGTGCTCAGCTCAC 59.815 47.826 0.00 0.00 31.72 3.51
855 905 2.158856 TCAGCTCACCATCATCACCATC 60.159 50.000 0.00 0.00 0.00 3.51
857 907 1.816961 GCTCACCATCATCACCATCCC 60.817 57.143 0.00 0.00 0.00 3.85
880 932 1.342496 CAACACTGCCTCACTCTCTCA 59.658 52.381 0.00 0.00 0.00 3.27
886 938 1.747924 TGCCTCACTCTCTCAATCGAG 59.252 52.381 0.00 0.00 40.98 4.04
903 955 5.662674 ATCGAGAGCCTATAAATACCACC 57.337 43.478 0.00 0.00 0.00 4.61
913 965 5.309543 CCTATAAATACCACCCATCTCACCA 59.690 44.000 0.00 0.00 0.00 4.17
926 980 1.202639 TCTCACCACAAACGCTCACAT 60.203 47.619 0.00 0.00 0.00 3.21
992 1061 5.991606 AGTCGATCAATCTGTTGTTTCAGAA 59.008 36.000 0.62 0.00 45.65 3.02
1018 1087 1.683011 CCATGAAGTACTTGGGGCAGG 60.683 57.143 14.14 6.29 39.30 4.85
1136 1205 3.958860 GGGGGCCATCATCGGGAG 61.959 72.222 4.39 0.00 0.00 4.30
1400 1476 3.932545 TGTGTCAGTGTTTGCTTGTTT 57.067 38.095 0.00 0.00 0.00 2.83
1404 1480 2.165437 GTCAGTGTTTGCTTGTTTCCCA 59.835 45.455 0.00 0.00 0.00 4.37
1405 1481 2.828520 TCAGTGTTTGCTTGTTTCCCAA 59.171 40.909 0.00 0.00 0.00 4.12
1414 1490 3.211045 GCTTGTTTCCCAACACTGTCTA 58.789 45.455 0.00 0.00 42.87 2.59
1469 1582 9.370126 GTGTATCTGAATTTACGCAATAATGAC 57.630 33.333 0.00 0.00 0.00 3.06
1494 1607 6.361481 CGATGTTTCCAGCTATATGCAATTTG 59.639 38.462 0.00 0.00 45.94 2.32
1529 1642 2.462889 CGTGCATATTTTCATGTGGCC 58.537 47.619 0.00 0.00 0.00 5.36
1530 1643 2.099592 CGTGCATATTTTCATGTGGCCT 59.900 45.455 3.32 0.00 0.00 5.19
1531 1644 3.429272 CGTGCATATTTTCATGTGGCCTT 60.429 43.478 3.32 0.00 0.00 4.35
1532 1645 4.114794 GTGCATATTTTCATGTGGCCTTC 58.885 43.478 3.32 0.00 0.00 3.46
1550 1664 4.873827 GCCTTCGTGGTAGTCATCAATAAA 59.126 41.667 0.00 0.00 38.35 1.40
1554 1668 7.222224 CCTTCGTGGTAGTCATCAATAAACTAC 59.778 40.741 3.83 3.83 42.91 2.73
1555 1669 7.400599 TCGTGGTAGTCATCAATAAACTACT 57.599 36.000 10.65 0.00 43.09 2.57
1556 1670 7.478322 TCGTGGTAGTCATCAATAAACTACTC 58.522 38.462 10.65 3.76 43.09 2.59
1557 1671 6.696148 CGTGGTAGTCATCAATAAACTACTCC 59.304 42.308 10.65 3.02 43.09 3.85
1558 1672 6.985059 GTGGTAGTCATCAATAAACTACTCCC 59.015 42.308 10.65 0.00 43.09 4.30
1559 1673 6.901300 TGGTAGTCATCAATAAACTACTCCCT 59.099 38.462 10.65 0.00 43.09 4.20
1560 1674 7.069578 TGGTAGTCATCAATAAACTACTCCCTC 59.930 40.741 10.65 0.00 43.09 4.30
1561 1675 6.487299 AGTCATCAATAAACTACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
1562 1676 5.964477 AGTCATCAATAAACTACTCCCTCCA 59.036 40.000 0.00 0.00 0.00 3.86
1563 1677 6.617371 AGTCATCAATAAACTACTCCCTCCAT 59.383 38.462 0.00 0.00 0.00 3.41
1564 1678 7.127955 AGTCATCAATAAACTACTCCCTCCATT 59.872 37.037 0.00 0.00 0.00 3.16
1565 1679 7.442666 GTCATCAATAAACTACTCCCTCCATTC 59.557 40.741 0.00 0.00 0.00 2.67
1566 1680 6.248569 TCAATAAACTACTCCCTCCATTCC 57.751 41.667 0.00 0.00 0.00 3.01
1567 1681 4.957684 ATAAACTACTCCCTCCATTCCG 57.042 45.455 0.00 0.00 0.00 4.30
1568 1682 2.544844 AACTACTCCCTCCATTCCGA 57.455 50.000 0.00 0.00 0.00 4.55
1569 1683 2.074729 ACTACTCCCTCCATTCCGAG 57.925 55.000 0.00 0.00 0.00 4.63
1570 1684 1.569548 ACTACTCCCTCCATTCCGAGA 59.430 52.381 0.00 0.00 30.97 4.04
1571 1685 2.024273 ACTACTCCCTCCATTCCGAGAA 60.024 50.000 0.00 0.00 30.97 2.87
1572 1686 2.182516 ACTCCCTCCATTCCGAGAAT 57.817 50.000 0.00 0.00 30.97 2.40
1573 1687 1.765314 ACTCCCTCCATTCCGAGAATG 59.235 52.381 15.60 15.60 30.97 2.67
1574 1688 1.071385 CTCCCTCCATTCCGAGAATGG 59.929 57.143 26.93 26.93 46.59 3.16
1581 1695 3.389687 CATTCCGAGAATGGACGTTTG 57.610 47.619 15.04 0.00 37.89 2.93
1582 1696 1.803334 TTCCGAGAATGGACGTTTGG 58.197 50.000 0.00 0.00 37.89 3.28
1583 1697 0.672401 TCCGAGAATGGACGTTTGGC 60.672 55.000 0.00 0.00 31.53 4.52
1584 1698 0.673644 CCGAGAATGGACGTTTGGCT 60.674 55.000 0.00 0.00 0.00 4.75
1585 1699 0.721718 CGAGAATGGACGTTTGGCTC 59.278 55.000 0.00 0.00 0.00 4.70
1586 1700 1.673033 CGAGAATGGACGTTTGGCTCT 60.673 52.381 0.00 0.00 0.00 4.09
1587 1701 2.003301 GAGAATGGACGTTTGGCTCTC 58.997 52.381 0.00 0.00 0.00 3.20
1588 1702 0.721718 GAATGGACGTTTGGCTCTCG 59.278 55.000 0.00 0.00 0.00 4.04
1589 1703 0.673644 AATGGACGTTTGGCTCTCGG 60.674 55.000 0.00 0.00 0.00 4.63
1590 1704 3.119096 GGACGTTTGGCTCTCGGC 61.119 66.667 0.00 0.00 40.90 5.54
1599 1713 3.157252 GCTCTCGGCCTCCATGGA 61.157 66.667 15.27 15.27 38.35 3.41
1600 1714 3.136750 CTCTCGGCCTCCATGGAG 58.863 66.667 31.69 31.69 41.63 3.86
1679 1793 9.410556 CTGAAAAATATGTGGAAGTAAACAAGG 57.589 33.333 0.00 0.00 0.00 3.61
1680 1794 9.137459 TGAAAAATATGTGGAAGTAAACAAGGA 57.863 29.630 0.00 0.00 0.00 3.36
1682 1796 9.927668 AAAAATATGTGGAAGTAAACAAGGATG 57.072 29.630 0.00 0.00 0.00 3.51
1683 1797 8.650143 AAATATGTGGAAGTAAACAAGGATGT 57.350 30.769 0.00 0.00 43.14 3.06
1697 1811 6.741992 ACAAGGATGTTATGTGTATGTGTG 57.258 37.500 0.00 0.00 35.91 3.82
1698 1812 6.237901 ACAAGGATGTTATGTGTATGTGTGT 58.762 36.000 0.00 0.00 35.91 3.72
1699 1813 7.390823 ACAAGGATGTTATGTGTATGTGTGTA 58.609 34.615 0.00 0.00 35.91 2.90
1700 1814 7.880713 ACAAGGATGTTATGTGTATGTGTGTAA 59.119 33.333 0.00 0.00 35.91 2.41
1701 1815 8.726068 CAAGGATGTTATGTGTATGTGTGTAAA 58.274 33.333 0.00 0.00 0.00 2.01
1702 1816 8.856153 AGGATGTTATGTGTATGTGTGTAAAA 57.144 30.769 0.00 0.00 0.00 1.52
1703 1817 9.461312 AGGATGTTATGTGTATGTGTGTAAAAT 57.539 29.630 0.00 0.00 0.00 1.82
1718 1832 9.239002 TGTGTGTAAAATTTTAGGATCAAAACG 57.761 29.630 10.92 0.00 30.57 3.60
1719 1833 9.240159 GTGTGTAAAATTTTAGGATCAAAACGT 57.760 29.630 10.92 0.00 30.57 3.99
1720 1834 9.804758 TGTGTAAAATTTTAGGATCAAAACGTT 57.195 25.926 10.92 0.00 30.57 3.99
1727 1841 7.401484 TTTTAGGATCAAAACGTTGAAATGC 57.599 32.000 0.00 0.91 46.66 3.56
1728 1842 3.564511 AGGATCAAAACGTTGAAATGCG 58.435 40.909 0.00 0.00 46.66 4.73
1729 1843 2.661195 GGATCAAAACGTTGAAATGCGG 59.339 45.455 0.00 0.00 46.66 5.69
1730 1844 1.482278 TCAAAACGTTGAAATGCGGC 58.518 45.000 0.00 0.00 40.87 6.53
1731 1845 0.506506 CAAAACGTTGAAATGCGGCC 59.493 50.000 0.00 0.00 36.83 6.13
1732 1846 0.387565 AAAACGTTGAAATGCGGCCT 59.612 45.000 0.00 0.00 0.00 5.19
1733 1847 0.318614 AAACGTTGAAATGCGGCCTG 60.319 50.000 0.00 0.00 0.00 4.85
1734 1848 1.452145 AACGTTGAAATGCGGCCTGT 61.452 50.000 0.00 0.00 0.00 4.00
1735 1849 0.604243 ACGTTGAAATGCGGCCTGTA 60.604 50.000 0.00 0.00 0.00 2.74
1736 1850 0.179200 CGTTGAAATGCGGCCTGTAC 60.179 55.000 0.00 0.00 0.00 2.90
1737 1851 0.878416 GTTGAAATGCGGCCTGTACA 59.122 50.000 0.00 0.00 0.00 2.90
1738 1852 1.268352 GTTGAAATGCGGCCTGTACAA 59.732 47.619 0.00 0.00 0.00 2.41
1739 1853 1.610363 TGAAATGCGGCCTGTACAAA 58.390 45.000 0.00 0.00 0.00 2.83
1740 1854 1.957177 TGAAATGCGGCCTGTACAAAA 59.043 42.857 0.00 0.00 0.00 2.44
1741 1855 2.362397 TGAAATGCGGCCTGTACAAAAA 59.638 40.909 0.00 0.00 0.00 1.94
1766 1880 8.986929 AAAAGATAAATTCATGACCTAGGAGG 57.013 34.615 17.98 0.00 42.49 4.30
1950 2091 3.455152 CCCGTCGGCATAGGATCA 58.545 61.111 5.50 0.00 0.00 2.92
1952 2093 1.464376 CCCGTCGGCATAGGATCAGT 61.464 60.000 5.50 0.00 0.00 3.41
1963 2104 1.621992 AGGATCAGTCGTCGGCATAT 58.378 50.000 0.00 0.00 0.00 1.78
1965 2106 1.607713 GATCAGTCGTCGGCATATCG 58.392 55.000 0.00 0.00 0.00 2.92
2115 2256 1.944676 GCCACGTCATCGATCCGTC 60.945 63.158 14.79 4.06 40.62 4.79
2117 2258 0.942252 CCACGTCATCGATCCGTCTA 59.058 55.000 14.79 0.00 40.62 2.59
2208 2363 7.367997 CGTCGGCATACGTTTATTTTACTTAAC 59.632 37.037 0.00 0.00 44.69 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.538287 GGACCTGTTGCAGCCTTCTT 60.538 55.000 0.00 0.00 0.00 2.52
1 2 1.073897 GGACCTGTTGCAGCCTTCT 59.926 57.895 0.00 0.00 0.00 2.85
2 3 0.610232 ATGGACCTGTTGCAGCCTTC 60.610 55.000 0.00 0.00 0.00 3.46
3 4 0.610232 GATGGACCTGTTGCAGCCTT 60.610 55.000 0.00 0.00 0.00 4.35
4 5 1.001641 GATGGACCTGTTGCAGCCT 60.002 57.895 0.00 0.00 0.00 4.58
5 6 2.048603 GGATGGACCTGTTGCAGCC 61.049 63.158 0.00 0.00 45.75 4.85
6 7 3.595819 GGATGGACCTGTTGCAGC 58.404 61.111 0.00 0.00 35.41 5.25
15 16 0.539438 TGTGGTTGCAAGGATGGACC 60.539 55.000 0.00 0.00 39.35 4.46
16 17 0.598065 GTGTGGTTGCAAGGATGGAC 59.402 55.000 0.00 0.00 0.00 4.02
17 18 0.184692 TGTGTGGTTGCAAGGATGGA 59.815 50.000 0.00 0.00 0.00 3.41
18 19 1.000060 CTTGTGTGGTTGCAAGGATGG 60.000 52.381 0.00 0.00 38.61 3.51
19 20 2.427232 CTTGTGTGGTTGCAAGGATG 57.573 50.000 0.00 0.00 38.61 3.51
23 24 2.023673 TCTTCCTTGTGTGGTTGCAAG 58.976 47.619 0.00 0.00 41.08 4.01
24 25 2.136298 TCTTCCTTGTGTGGTTGCAA 57.864 45.000 0.00 0.00 0.00 4.08
25 26 1.955778 CATCTTCCTTGTGTGGTTGCA 59.044 47.619 0.00 0.00 0.00 4.08
26 27 1.270550 CCATCTTCCTTGTGTGGTTGC 59.729 52.381 0.00 0.00 0.00 4.17
27 28 1.270550 GCCATCTTCCTTGTGTGGTTG 59.729 52.381 0.00 0.00 32.56 3.77
28 29 1.620822 GCCATCTTCCTTGTGTGGTT 58.379 50.000 0.00 0.00 32.56 3.67
29 30 0.251341 GGCCATCTTCCTTGTGTGGT 60.251 55.000 0.00 0.00 32.56 4.16
30 31 1.308069 CGGCCATCTTCCTTGTGTGG 61.308 60.000 2.24 0.00 0.00 4.17
31 32 0.321564 TCGGCCATCTTCCTTGTGTG 60.322 55.000 2.24 0.00 0.00 3.82
32 33 0.400213 TTCGGCCATCTTCCTTGTGT 59.600 50.000 2.24 0.00 0.00 3.72
33 34 1.402968 CATTCGGCCATCTTCCTTGTG 59.597 52.381 2.24 0.00 0.00 3.33
34 35 1.281867 TCATTCGGCCATCTTCCTTGT 59.718 47.619 2.24 0.00 0.00 3.16
35 36 1.672881 GTCATTCGGCCATCTTCCTTG 59.327 52.381 2.24 0.00 0.00 3.61
36 37 1.281867 TGTCATTCGGCCATCTTCCTT 59.718 47.619 2.24 0.00 0.00 3.36
37 38 0.911769 TGTCATTCGGCCATCTTCCT 59.088 50.000 2.24 0.00 0.00 3.36
38 39 1.134401 TCTGTCATTCGGCCATCTTCC 60.134 52.381 2.24 0.00 0.00 3.46
39 40 2.315925 TCTGTCATTCGGCCATCTTC 57.684 50.000 2.24 0.00 0.00 2.87
40 41 2.804572 CGATCTGTCATTCGGCCATCTT 60.805 50.000 2.24 0.00 0.00 2.40
41 42 1.269988 CGATCTGTCATTCGGCCATCT 60.270 52.381 2.24 0.00 0.00 2.90
42 43 1.143305 CGATCTGTCATTCGGCCATC 58.857 55.000 2.24 0.00 0.00 3.51
43 44 0.465705 ACGATCTGTCATTCGGCCAT 59.534 50.000 2.24 0.00 39.61 4.40
44 45 0.249120 AACGATCTGTCATTCGGCCA 59.751 50.000 2.24 0.00 39.61 5.36
45 46 0.931005 GAACGATCTGTCATTCGGCC 59.069 55.000 0.00 0.00 39.61 6.13
46 47 1.640428 TGAACGATCTGTCATTCGGC 58.360 50.000 9.37 3.27 39.61 5.54
47 48 4.445718 CCTAATGAACGATCTGTCATTCGG 59.554 45.833 18.69 17.88 39.61 4.30
48 49 5.281727 TCCTAATGAACGATCTGTCATTCG 58.718 41.667 18.69 14.32 41.04 3.34
49 50 7.721286 AATCCTAATGAACGATCTGTCATTC 57.279 36.000 18.69 4.51 33.41 2.67
50 51 9.265901 CTAAATCCTAATGAACGATCTGTCATT 57.734 33.333 18.97 18.97 34.70 2.57
51 52 7.875041 CCTAAATCCTAATGAACGATCTGTCAT 59.125 37.037 0.00 2.92 0.00 3.06
52 53 7.210174 CCTAAATCCTAATGAACGATCTGTCA 58.790 38.462 0.00 0.00 0.00 3.58
53 54 6.647067 CCCTAAATCCTAATGAACGATCTGTC 59.353 42.308 0.00 0.00 0.00 3.51
54 55 6.464465 CCCCTAAATCCTAATGAACGATCTGT 60.464 42.308 0.00 0.00 0.00 3.41
55 56 5.934625 CCCCTAAATCCTAATGAACGATCTG 59.065 44.000 0.00 0.00 0.00 2.90
56 57 5.513267 GCCCCTAAATCCTAATGAACGATCT 60.513 44.000 0.00 0.00 0.00 2.75
57 58 4.695928 GCCCCTAAATCCTAATGAACGATC 59.304 45.833 0.00 0.00 0.00 3.69
58 59 4.506802 GGCCCCTAAATCCTAATGAACGAT 60.507 45.833 0.00 0.00 0.00 3.73
59 60 3.181448 GGCCCCTAAATCCTAATGAACGA 60.181 47.826 0.00 0.00 0.00 3.85
60 61 3.146847 GGCCCCTAAATCCTAATGAACG 58.853 50.000 0.00 0.00 0.00 3.95
61 62 4.178956 TGGCCCCTAAATCCTAATGAAC 57.821 45.455 0.00 0.00 0.00 3.18
62 63 4.449081 CCATGGCCCCTAAATCCTAATGAA 60.449 45.833 0.00 0.00 0.00 2.57
63 64 3.075882 CCATGGCCCCTAAATCCTAATGA 59.924 47.826 0.00 0.00 0.00 2.57
64 65 3.075882 TCCATGGCCCCTAAATCCTAATG 59.924 47.826 6.96 0.00 0.00 1.90
65 66 3.345087 TCCATGGCCCCTAAATCCTAAT 58.655 45.455 6.96 0.00 0.00 1.73
66 67 2.795556 TCCATGGCCCCTAAATCCTAA 58.204 47.619 6.96 0.00 0.00 2.69
67 68 2.445525 GTTCCATGGCCCCTAAATCCTA 59.554 50.000 6.96 0.00 0.00 2.94
68 69 1.217942 GTTCCATGGCCCCTAAATCCT 59.782 52.381 6.96 0.00 0.00 3.24
69 70 1.063266 TGTTCCATGGCCCCTAAATCC 60.063 52.381 6.96 0.00 0.00 3.01
70 71 2.452600 TGTTCCATGGCCCCTAAATC 57.547 50.000 6.96 0.00 0.00 2.17
71 72 3.467103 AGTATGTTCCATGGCCCCTAAAT 59.533 43.478 6.96 0.00 0.00 1.40
72 73 2.856231 AGTATGTTCCATGGCCCCTAAA 59.144 45.455 6.96 0.00 0.00 1.85
73 74 2.174639 CAGTATGTTCCATGGCCCCTAA 59.825 50.000 6.96 0.00 0.00 2.69
74 75 1.774254 CAGTATGTTCCATGGCCCCTA 59.226 52.381 6.96 0.00 0.00 3.53
75 76 0.552848 CAGTATGTTCCATGGCCCCT 59.447 55.000 6.96 0.00 0.00 4.79
76 77 3.116091 CAGTATGTTCCATGGCCCC 57.884 57.895 6.96 0.00 0.00 5.80
92 93 6.884187 ACGTTGTACTGTTTGCTAATTACAG 58.116 36.000 4.16 4.16 43.72 2.74
93 94 6.847956 ACGTTGTACTGTTTGCTAATTACA 57.152 33.333 0.00 0.00 0.00 2.41
94 95 7.111041 CACAACGTTGTACTGTTTGCTAATTAC 59.889 37.037 31.86 0.00 39.91 1.89
95 96 7.127042 CACAACGTTGTACTGTTTGCTAATTA 58.873 34.615 31.86 0.00 39.91 1.40
96 97 5.968848 CACAACGTTGTACTGTTTGCTAATT 59.031 36.000 31.86 2.28 39.91 1.40
97 98 5.065474 ACACAACGTTGTACTGTTTGCTAAT 59.935 36.000 31.86 2.97 39.91 1.73
98 99 4.392445 ACACAACGTTGTACTGTTTGCTAA 59.608 37.500 31.86 0.00 39.91 3.09
99 100 3.933955 ACACAACGTTGTACTGTTTGCTA 59.066 39.130 31.86 0.00 39.91 3.49
100 101 2.745281 ACACAACGTTGTACTGTTTGCT 59.255 40.909 31.86 4.20 39.91 3.91
101 102 2.843643 CACACAACGTTGTACTGTTTGC 59.156 45.455 31.86 0.00 39.91 3.68
102 103 4.142988 ACTCACACAACGTTGTACTGTTTG 60.143 41.667 31.86 20.12 39.91 2.93
103 104 3.998341 ACTCACACAACGTTGTACTGTTT 59.002 39.130 31.86 17.18 39.91 2.83
104 105 3.369756 CACTCACACAACGTTGTACTGTT 59.630 43.478 31.86 17.47 39.91 3.16
105 106 2.927477 CACTCACACAACGTTGTACTGT 59.073 45.455 31.86 22.82 39.91 3.55
106 107 2.927477 ACACTCACACAACGTTGTACTG 59.073 45.455 31.86 26.79 39.91 2.74
107 108 2.927477 CACACTCACACAACGTTGTACT 59.073 45.455 31.86 17.91 39.91 2.73
108 109 2.924926 TCACACTCACACAACGTTGTAC 59.075 45.455 31.86 0.00 39.91 2.90
109 110 2.924926 GTCACACTCACACAACGTTGTA 59.075 45.455 31.86 17.01 39.91 2.41
110 111 1.730064 GTCACACTCACACAACGTTGT 59.270 47.619 27.70 27.70 43.36 3.32
111 112 1.266842 CGTCACACTCACACAACGTTG 60.267 52.381 26.20 26.20 0.00 4.10
112 113 0.996462 CGTCACACTCACACAACGTT 59.004 50.000 0.00 0.00 0.00 3.99
113 114 1.418342 GCGTCACACTCACACAACGT 61.418 55.000 0.00 0.00 33.00 3.99
114 115 1.272715 GCGTCACACTCACACAACG 59.727 57.895 0.00 0.00 0.00 4.10
115 116 1.272715 CGCGTCACACTCACACAAC 59.727 57.895 0.00 0.00 0.00 3.32
116 117 1.880796 CCGCGTCACACTCACACAA 60.881 57.895 4.92 0.00 0.00 3.33
117 118 2.279186 CCGCGTCACACTCACACA 60.279 61.111 4.92 0.00 0.00 3.72
118 119 0.595567 TAACCGCGTCACACTCACAC 60.596 55.000 4.92 0.00 0.00 3.82
119 120 0.318360 CTAACCGCGTCACACTCACA 60.318 55.000 4.92 0.00 0.00 3.58
120 121 1.615107 GCTAACCGCGTCACACTCAC 61.615 60.000 4.92 0.00 0.00 3.51
121 122 1.372499 GCTAACCGCGTCACACTCA 60.372 57.895 4.92 0.00 0.00 3.41
122 123 1.080705 AGCTAACCGCGTCACACTC 60.081 57.895 4.92 0.00 45.59 3.51
123 124 1.372997 CAGCTAACCGCGTCACACT 60.373 57.895 4.92 0.00 45.59 3.55
124 125 0.942410 TTCAGCTAACCGCGTCACAC 60.942 55.000 4.92 0.00 45.59 3.82
125 126 0.037697 ATTCAGCTAACCGCGTCACA 60.038 50.000 4.92 0.00 45.59 3.58
126 127 1.917273 TATTCAGCTAACCGCGTCAC 58.083 50.000 4.92 0.00 45.59 3.67
127 128 2.164827 TCTTATTCAGCTAACCGCGTCA 59.835 45.455 4.92 0.00 45.59 4.35
128 129 2.805845 TCTTATTCAGCTAACCGCGTC 58.194 47.619 4.92 0.00 45.59 5.19
129 130 2.953466 TCTTATTCAGCTAACCGCGT 57.047 45.000 4.92 0.00 45.59 6.01
130 131 3.182572 GTCATCTTATTCAGCTAACCGCG 59.817 47.826 0.00 0.00 45.59 6.46
131 132 3.495001 GGTCATCTTATTCAGCTAACCGC 59.505 47.826 0.00 0.00 39.57 5.68
132 133 4.747108 CAGGTCATCTTATTCAGCTAACCG 59.253 45.833 0.00 0.00 0.00 4.44
133 134 5.059833 CCAGGTCATCTTATTCAGCTAACC 58.940 45.833 0.00 0.00 0.00 2.85
134 135 5.059833 CCCAGGTCATCTTATTCAGCTAAC 58.940 45.833 0.00 0.00 0.00 2.34
135 136 4.968719 TCCCAGGTCATCTTATTCAGCTAA 59.031 41.667 0.00 0.00 0.00 3.09
136 137 4.556697 TCCCAGGTCATCTTATTCAGCTA 58.443 43.478 0.00 0.00 0.00 3.32
137 138 3.387962 TCCCAGGTCATCTTATTCAGCT 58.612 45.455 0.00 0.00 0.00 4.24
138 139 3.845781 TCCCAGGTCATCTTATTCAGC 57.154 47.619 0.00 0.00 0.00 4.26
139 140 5.587844 CACTTTCCCAGGTCATCTTATTCAG 59.412 44.000 0.00 0.00 0.00 3.02
140 141 5.014123 ACACTTTCCCAGGTCATCTTATTCA 59.986 40.000 0.00 0.00 0.00 2.57
141 142 5.501156 ACACTTTCCCAGGTCATCTTATTC 58.499 41.667 0.00 0.00 0.00 1.75
142 143 5.014123 TGACACTTTCCCAGGTCATCTTATT 59.986 40.000 0.00 0.00 35.51 1.40
143 144 4.536090 TGACACTTTCCCAGGTCATCTTAT 59.464 41.667 0.00 0.00 35.51 1.73
144 145 3.907474 TGACACTTTCCCAGGTCATCTTA 59.093 43.478 0.00 0.00 35.51 2.10
145 146 2.711009 TGACACTTTCCCAGGTCATCTT 59.289 45.455 0.00 0.00 35.51 2.40
146 147 2.338809 TGACACTTTCCCAGGTCATCT 58.661 47.619 0.00 0.00 35.51 2.90
147 148 2.859165 TGACACTTTCCCAGGTCATC 57.141 50.000 0.00 0.00 35.51 2.92
149 150 2.862541 CAATGACACTTTCCCAGGTCA 58.137 47.619 0.00 0.00 43.61 4.02
150 151 1.541588 GCAATGACACTTTCCCAGGTC 59.458 52.381 0.00 0.00 0.00 3.85
151 152 1.620822 GCAATGACACTTTCCCAGGT 58.379 50.000 0.00 0.00 0.00 4.00
152 153 0.890683 GGCAATGACACTTTCCCAGG 59.109 55.000 0.00 0.00 0.00 4.45
153 154 1.270550 GTGGCAATGACACTTTCCCAG 59.729 52.381 12.77 0.00 38.75 4.45
154 155 1.327303 GTGGCAATGACACTTTCCCA 58.673 50.000 12.77 0.00 38.75 4.37
155 156 0.603065 GGTGGCAATGACACTTTCCC 59.397 55.000 19.66 0.00 42.03 3.97
156 157 1.327303 TGGTGGCAATGACACTTTCC 58.673 50.000 19.66 2.52 42.03 3.13
157 158 2.094545 GGATGGTGGCAATGACACTTTC 60.095 50.000 19.66 14.99 42.03 2.62
158 159 1.895131 GGATGGTGGCAATGACACTTT 59.105 47.619 19.66 6.67 42.03 2.66
159 160 1.076024 AGGATGGTGGCAATGACACTT 59.924 47.619 19.66 7.06 42.03 3.16
160 161 0.700564 AGGATGGTGGCAATGACACT 59.299 50.000 19.66 0.00 42.03 3.55
161 162 1.549203 AAGGATGGTGGCAATGACAC 58.451 50.000 11.47 11.47 41.56 3.67
162 163 2.307496 AAAGGATGGTGGCAATGACA 57.693 45.000 0.00 0.00 0.00 3.58
163 164 3.683365 AAAAAGGATGGTGGCAATGAC 57.317 42.857 0.00 0.00 0.00 3.06
192 193 2.872027 CGCTACAGAATGGTGGCAACC 61.872 57.143 2.12 2.12 44.50 3.77
193 194 0.447801 CGCTACAGAATGGTGGCAAC 59.552 55.000 0.00 0.00 44.50 4.17
194 195 0.036164 ACGCTACAGAATGGTGGCAA 59.964 50.000 0.00 0.00 44.50 4.52
195 196 0.036164 AACGCTACAGAATGGTGGCA 59.964 50.000 2.73 0.00 44.50 4.92
196 197 1.135689 CAAACGCTACAGAATGGTGGC 60.136 52.381 0.00 0.00 43.62 5.01
197 198 2.095768 CACAAACGCTACAGAATGGTGG 60.096 50.000 0.00 0.00 43.62 4.61
198 199 2.095768 CCACAAACGCTACAGAATGGTG 60.096 50.000 0.00 0.00 43.62 4.17
199 200 2.151202 CCACAAACGCTACAGAATGGT 58.849 47.619 0.00 0.00 43.62 3.55
200 201 1.135689 GCCACAAACGCTACAGAATGG 60.136 52.381 0.00 0.00 43.62 3.16
210 211 1.352114 TATAGACGTGCCACAAACGC 58.648 50.000 0.00 0.00 44.80 4.84
211 212 4.593597 AAATATAGACGTGCCACAAACG 57.406 40.909 0.00 0.00 46.32 3.60
236 245 4.521130 ACGCATACTGTTCTTTCTCAGA 57.479 40.909 0.00 0.00 35.84 3.27
250 259 5.796350 AAAAGTATCTGGACAACGCATAC 57.204 39.130 0.00 0.00 0.00 2.39
255 264 7.653767 AAGAGTAAAAAGTATCTGGACAACG 57.346 36.000 0.00 0.00 0.00 4.10
282 291 4.894705 TCCATTTGCAGTATTATGCCACAT 59.105 37.500 0.00 0.00 45.91 3.21
283 292 4.276642 TCCATTTGCAGTATTATGCCACA 58.723 39.130 0.00 0.00 45.91 4.17
312 325 3.181455 ACACACATTTGCCTCTCACACTA 60.181 43.478 0.00 0.00 0.00 2.74
313 326 2.224606 CACACATTTGCCTCTCACACT 58.775 47.619 0.00 0.00 0.00 3.55
314 327 1.949525 ACACACATTTGCCTCTCACAC 59.050 47.619 0.00 0.00 0.00 3.82
316 329 3.403038 AGTACACACATTTGCCTCTCAC 58.597 45.455 0.00 0.00 0.00 3.51
328 344 3.883489 CTGGATCCGATCTAGTACACACA 59.117 47.826 12.48 0.00 33.67 3.72
336 352 2.556189 CAGGACACTGGATCCGATCTAG 59.444 54.545 17.72 17.72 42.84 2.43
337 353 2.174854 TCAGGACACTGGATCCGATCTA 59.825 50.000 7.39 1.23 44.99 1.98
338 354 1.063642 TCAGGACACTGGATCCGATCT 60.064 52.381 7.39 0.00 44.99 2.75
339 355 1.403814 TCAGGACACTGGATCCGATC 58.596 55.000 7.39 0.00 44.99 3.69
340 356 1.482593 GTTCAGGACACTGGATCCGAT 59.517 52.381 7.39 0.00 44.99 4.18
341 357 0.895530 GTTCAGGACACTGGATCCGA 59.104 55.000 7.39 0.00 44.99 4.55
342 358 0.608130 TGTTCAGGACACTGGATCCG 59.392 55.000 7.39 4.62 44.99 4.18
343 359 3.197766 TGTATGTTCAGGACACTGGATCC 59.802 47.826 4.20 4.20 44.99 3.36
354 370 0.249120 TGGCTCGGTGTATGTTCAGG 59.751 55.000 0.00 0.00 0.00 3.86
360 376 1.575244 CATGTCTGGCTCGGTGTATG 58.425 55.000 0.00 0.00 0.00 2.39
422 450 8.494016 AAACATCTGTGGTAGTAATTAAGAGC 57.506 34.615 0.00 0.00 0.00 4.09
429 457 9.174166 GGAACATAAAACATCTGTGGTAGTAAT 57.826 33.333 0.00 0.00 0.00 1.89
430 458 7.608761 GGGAACATAAAACATCTGTGGTAGTAA 59.391 37.037 0.00 0.00 0.00 2.24
433 461 6.180472 AGGGAACATAAAACATCTGTGGTAG 58.820 40.000 0.00 0.00 0.00 3.18
437 465 5.713025 CCAAGGGAACATAAAACATCTGTG 58.287 41.667 0.00 0.00 0.00 3.66
464 492 0.947180 GTTAGTCCGGTTGCTTCGCA 60.947 55.000 0.00 0.00 36.47 5.10
465 493 0.669625 AGTTAGTCCGGTTGCTTCGC 60.670 55.000 0.00 0.00 0.00 4.70
466 494 2.527100 CTAGTTAGTCCGGTTGCTTCG 58.473 52.381 0.00 0.00 0.00 3.79
467 495 2.269172 GCTAGTTAGTCCGGTTGCTTC 58.731 52.381 0.00 0.00 0.00 3.86
472 500 4.504858 CTTTGATGCTAGTTAGTCCGGTT 58.495 43.478 0.00 0.00 0.00 4.44
487 515 4.843220 AGAAGGTTCAGTTGCTTTGATG 57.157 40.909 0.00 0.00 0.00 3.07
489 517 5.650543 GAAAAGAAGGTTCAGTTGCTTTGA 58.349 37.500 0.00 0.00 0.00 2.69
518 546 7.096189 GGTTTGTTAACTAAGCTGCTTAAAAGC 60.096 37.037 21.34 20.30 41.92 3.51
519 547 8.135529 AGGTTTGTTAACTAAGCTGCTTAAAAG 58.864 33.333 26.22 14.87 37.84 2.27
520 548 8.002984 AGGTTTGTTAACTAAGCTGCTTAAAA 57.997 30.769 26.22 14.81 37.84 1.52
521 549 7.255346 GGAGGTTTGTTAACTAAGCTGCTTAAA 60.255 37.037 30.70 11.41 41.38 1.52
522 550 6.206048 GGAGGTTTGTTAACTAAGCTGCTTAA 59.794 38.462 30.70 7.33 41.38 1.85
523 551 5.704053 GGAGGTTTGTTAACTAAGCTGCTTA 59.296 40.000 30.70 20.04 41.38 3.09
524 552 4.519350 GGAGGTTTGTTAACTAAGCTGCTT 59.481 41.667 30.70 19.93 41.38 3.91
525 553 4.072839 GGAGGTTTGTTAACTAAGCTGCT 58.927 43.478 30.70 15.34 41.38 4.24
526 554 3.818773 TGGAGGTTTGTTAACTAAGCTGC 59.181 43.478 31.04 31.04 43.40 5.25
527 555 4.215613 GGTGGAGGTTTGTTAACTAAGCTG 59.784 45.833 29.99 0.00 38.95 4.24
528 556 4.104261 AGGTGGAGGTTTGTTAACTAAGCT 59.896 41.667 26.84 26.84 40.84 3.74
534 562 4.517832 CAGGTTAGGTGGAGGTTTGTTAAC 59.482 45.833 0.00 0.00 0.00 2.01
543 571 2.514458 AAATGCAGGTTAGGTGGAGG 57.486 50.000 0.00 0.00 0.00 4.30
644 676 5.888982 AAGGGGATAATATATACTGGCCG 57.111 43.478 0.00 0.00 0.00 6.13
646 678 7.862675 ACTGAAAGGGGATAATATATACTGGC 58.137 38.462 0.00 0.00 39.30 4.85
725 761 3.684305 CACATAGCGTTCATGGAAGACAA 59.316 43.478 0.00 0.00 0.00 3.18
750 786 6.484364 TCATATATGTGCCTTCTTGTCAGA 57.516 37.500 12.42 0.00 0.00 3.27
760 796 4.989277 TGGCTGAATTCATATATGTGCCT 58.011 39.130 24.62 0.00 38.70 4.75
825 875 0.181114 TGGTGAGCTGAGCACAAGTT 59.819 50.000 6.06 0.00 37.99 2.66
842 892 0.184211 TGCTGGGATGGTGATGATGG 59.816 55.000 0.00 0.00 0.00 3.51
880 932 5.046520 GGGTGGTATTTATAGGCTCTCGATT 60.047 44.000 0.00 0.00 0.00 3.34
886 938 5.248477 TGAGATGGGTGGTATTTATAGGCTC 59.752 44.000 0.00 0.00 0.00 4.70
903 955 0.798776 GAGCGTTTGTGGTGAGATGG 59.201 55.000 0.00 0.00 0.00 3.51
913 965 2.079158 CAGATGGATGTGAGCGTTTGT 58.921 47.619 0.00 0.00 0.00 2.83
926 980 2.239402 TGCAAGTATGGCTTCAGATGGA 59.761 45.455 0.00 0.00 34.64 3.41
992 1061 2.615493 CCCAAGTACTTCATGGCGTCTT 60.615 50.000 4.77 0.00 33.99 3.01
1341 1413 2.441164 GCGAGAGGCCAGAGAGGA 60.441 66.667 5.01 0.00 41.22 3.71
1400 1476 2.176889 GGTAGCTAGACAGTGTTGGGA 58.823 52.381 0.00 0.00 0.00 4.37
1404 1480 2.826725 GTCAGGGTAGCTAGACAGTGTT 59.173 50.000 0.00 0.00 0.00 3.32
1405 1481 2.448453 GTCAGGGTAGCTAGACAGTGT 58.552 52.381 0.00 0.00 0.00 3.55
1414 1490 1.022735 CGTACATCGTCAGGGTAGCT 58.977 55.000 0.00 0.00 34.52 3.32
1469 1582 5.618056 ATTGCATATAGCTGGAAACATCG 57.382 39.130 0.00 0.00 45.94 3.84
1494 1607 1.421485 CACGCGAGGAAGAACATGC 59.579 57.895 15.93 0.00 0.00 4.06
1529 1642 7.974501 AGTAGTTTATTGATGACTACCACGAAG 59.025 37.037 8.74 0.00 44.18 3.79
1530 1643 7.833786 AGTAGTTTATTGATGACTACCACGAA 58.166 34.615 8.74 0.00 44.18 3.85
1531 1644 7.400599 AGTAGTTTATTGATGACTACCACGA 57.599 36.000 8.74 0.00 44.18 4.35
1532 1645 6.696148 GGAGTAGTTTATTGATGACTACCACG 59.304 42.308 8.74 0.00 44.18 4.94
1550 1664 1.569548 TCTCGGAATGGAGGGAGTAGT 59.430 52.381 0.00 0.00 34.74 2.73
1554 1668 2.540265 CATTCTCGGAATGGAGGGAG 57.460 55.000 15.04 0.00 34.74 4.30
1560 1674 2.024176 AACGTCCATTCTCGGAATGG 57.976 50.000 26.93 26.93 46.59 3.16
1561 1675 2.095853 CCAAACGTCCATTCTCGGAATG 59.904 50.000 15.60 15.60 36.62 2.67
1562 1676 2.356135 CCAAACGTCCATTCTCGGAAT 58.644 47.619 0.00 0.00 36.62 3.01
1563 1677 1.803334 CCAAACGTCCATTCTCGGAA 58.197 50.000 0.00 0.00 36.62 4.30
1564 1678 0.672401 GCCAAACGTCCATTCTCGGA 60.672 55.000 0.00 0.00 0.00 4.55
1565 1679 0.673644 AGCCAAACGTCCATTCTCGG 60.674 55.000 0.00 0.00 0.00 4.63
1566 1680 0.721718 GAGCCAAACGTCCATTCTCG 59.278 55.000 0.00 0.00 0.00 4.04
1567 1681 2.003301 GAGAGCCAAACGTCCATTCTC 58.997 52.381 0.00 0.00 0.00 2.87
1568 1682 1.673033 CGAGAGCCAAACGTCCATTCT 60.673 52.381 0.00 0.00 0.00 2.40
1569 1683 0.721718 CGAGAGCCAAACGTCCATTC 59.278 55.000 0.00 0.00 0.00 2.67
1570 1684 0.673644 CCGAGAGCCAAACGTCCATT 60.674 55.000 0.00 0.00 0.00 3.16
1571 1685 1.079127 CCGAGAGCCAAACGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
1572 1686 2.342279 CCGAGAGCCAAACGTCCA 59.658 61.111 0.00 0.00 0.00 4.02
1573 1687 3.119096 GCCGAGAGCCAAACGTCC 61.119 66.667 0.00 0.00 34.35 4.79
1582 1696 3.157252 TCCATGGAGGCCGAGAGC 61.157 66.667 11.44 0.00 42.60 4.09
1583 1697 3.136750 CTCCATGGAGGCCGAGAG 58.863 66.667 31.14 6.42 38.51 3.20
1653 1767 9.410556 CCTTGTTTACTTCCACATATTTTTCAG 57.589 33.333 0.00 0.00 0.00 3.02
1654 1768 9.137459 TCCTTGTTTACTTCCACATATTTTTCA 57.863 29.630 0.00 0.00 0.00 2.69
1656 1770 9.927668 CATCCTTGTTTACTTCCACATATTTTT 57.072 29.630 0.00 0.00 0.00 1.94
1657 1771 9.088987 ACATCCTTGTTTACTTCCACATATTTT 57.911 29.630 0.00 0.00 29.55 1.82
1658 1772 8.650143 ACATCCTTGTTTACTTCCACATATTT 57.350 30.769 0.00 0.00 29.55 1.40
1659 1773 8.650143 AACATCCTTGTTTACTTCCACATATT 57.350 30.769 0.00 0.00 43.57 1.28
1660 1774 9.920946 ATAACATCCTTGTTTACTTCCACATAT 57.079 29.630 0.00 0.00 43.57 1.78
1661 1775 9.173021 CATAACATCCTTGTTTACTTCCACATA 57.827 33.333 0.00 0.00 43.57 2.29
1662 1776 7.669722 ACATAACATCCTTGTTTACTTCCACAT 59.330 33.333 0.00 0.00 43.57 3.21
1663 1777 7.001674 ACATAACATCCTTGTTTACTTCCACA 58.998 34.615 0.00 0.00 43.57 4.17
1664 1778 7.040686 ACACATAACATCCTTGTTTACTTCCAC 60.041 37.037 0.00 0.00 43.57 4.02
1665 1779 7.001674 ACACATAACATCCTTGTTTACTTCCA 58.998 34.615 0.00 0.00 43.57 3.53
1666 1780 7.448748 ACACATAACATCCTTGTTTACTTCC 57.551 36.000 0.00 0.00 43.57 3.46
1667 1781 9.988350 CATACACATAACATCCTTGTTTACTTC 57.012 33.333 0.00 0.00 43.57 3.01
1668 1782 9.515226 ACATACACATAACATCCTTGTTTACTT 57.485 29.630 0.00 0.00 43.57 2.24
1669 1783 8.946085 CACATACACATAACATCCTTGTTTACT 58.054 33.333 0.00 0.00 43.57 2.24
1670 1784 8.726988 ACACATACACATAACATCCTTGTTTAC 58.273 33.333 0.00 0.00 43.57 2.01
1671 1785 8.726068 CACACATACACATAACATCCTTGTTTA 58.274 33.333 0.00 0.00 43.57 2.01
1672 1786 7.230510 ACACACATACACATAACATCCTTGTTT 59.769 33.333 0.00 0.00 43.57 2.83
1674 1788 6.237901 ACACACATACACATAACATCCTTGT 58.762 36.000 0.00 0.00 37.82 3.16
1675 1789 6.741992 ACACACATACACATAACATCCTTG 57.258 37.500 0.00 0.00 0.00 3.61
1676 1790 8.856153 TTTACACACATACACATAACATCCTT 57.144 30.769 0.00 0.00 0.00 3.36
1677 1791 8.856153 TTTTACACACATACACATAACATCCT 57.144 30.769 0.00 0.00 0.00 3.24
1692 1806 9.239002 CGTTTTGATCCTAAAATTTTACACACA 57.761 29.630 6.54 3.53 32.71 3.72
1693 1807 9.240159 ACGTTTTGATCCTAAAATTTTACACAC 57.760 29.630 6.54 3.25 32.71 3.82
1694 1808 9.804758 AACGTTTTGATCCTAAAATTTTACACA 57.195 25.926 6.54 2.92 32.71 3.72
1701 1815 8.495148 GCATTTCAACGTTTTGATCCTAAAATT 58.505 29.630 0.00 0.00 41.50 1.82
1702 1816 7.148820 CGCATTTCAACGTTTTGATCCTAAAAT 60.149 33.333 0.00 0.00 41.50 1.82
1703 1817 6.143118 CGCATTTCAACGTTTTGATCCTAAAA 59.857 34.615 0.00 0.00 41.50 1.52
1704 1818 5.627367 CGCATTTCAACGTTTTGATCCTAAA 59.373 36.000 0.00 0.00 41.50 1.85
1705 1819 5.150683 CGCATTTCAACGTTTTGATCCTAA 58.849 37.500 0.00 0.00 41.50 2.69
1706 1820 4.378978 CCGCATTTCAACGTTTTGATCCTA 60.379 41.667 0.00 0.00 41.50 2.94
1707 1821 3.564511 CGCATTTCAACGTTTTGATCCT 58.435 40.909 0.00 0.00 41.50 3.24
1708 1822 2.661195 CCGCATTTCAACGTTTTGATCC 59.339 45.455 0.00 0.00 41.50 3.36
1709 1823 2.090503 GCCGCATTTCAACGTTTTGATC 59.909 45.455 0.00 0.00 41.50 2.92
1710 1824 2.058057 GCCGCATTTCAACGTTTTGAT 58.942 42.857 0.00 0.00 41.50 2.57
1711 1825 1.482278 GCCGCATTTCAACGTTTTGA 58.518 45.000 0.00 0.00 40.14 2.69
1712 1826 0.506506 GGCCGCATTTCAACGTTTTG 59.493 50.000 0.00 0.00 0.00 2.44
1713 1827 0.387565 AGGCCGCATTTCAACGTTTT 59.612 45.000 0.00 0.00 0.00 2.43
1714 1828 0.318614 CAGGCCGCATTTCAACGTTT 60.319 50.000 0.00 0.00 0.00 3.60
1715 1829 1.285641 CAGGCCGCATTTCAACGTT 59.714 52.632 0.00 0.00 0.00 3.99
1716 1830 0.604243 TACAGGCCGCATTTCAACGT 60.604 50.000 0.00 0.00 0.00 3.99
1717 1831 0.179200 GTACAGGCCGCATTTCAACG 60.179 55.000 0.00 0.00 0.00 4.10
1718 1832 0.878416 TGTACAGGCCGCATTTCAAC 59.122 50.000 0.00 0.00 0.00 3.18
1719 1833 1.610363 TTGTACAGGCCGCATTTCAA 58.390 45.000 0.00 0.00 0.00 2.69
1720 1834 1.610363 TTTGTACAGGCCGCATTTCA 58.390 45.000 0.00 0.00 0.00 2.69
1721 1835 2.715737 TTTTGTACAGGCCGCATTTC 57.284 45.000 0.00 0.00 0.00 2.17
1740 1854 9.413734 CCTCCTAGGTCATGAATTTATCTTTTT 57.586 33.333 9.08 0.00 0.00 1.94
1741 1855 8.781951 TCCTCCTAGGTCATGAATTTATCTTTT 58.218 33.333 9.08 0.00 36.53 2.27
1742 1856 8.337118 TCCTCCTAGGTCATGAATTTATCTTT 57.663 34.615 9.08 0.00 36.53 2.52
1743 1857 7.937700 TCCTCCTAGGTCATGAATTTATCTT 57.062 36.000 9.08 0.00 36.53 2.40
1744 1858 7.736691 TGATCCTCCTAGGTCATGAATTTATCT 59.263 37.037 9.08 0.00 36.53 1.98
1745 1859 7.821846 GTGATCCTCCTAGGTCATGAATTTATC 59.178 40.741 9.08 0.50 36.53 1.75
1746 1860 7.515514 AGTGATCCTCCTAGGTCATGAATTTAT 59.484 37.037 9.08 0.00 36.53 1.40
1747 1861 6.846505 AGTGATCCTCCTAGGTCATGAATTTA 59.153 38.462 9.08 0.00 36.53 1.40
1748 1862 5.669447 AGTGATCCTCCTAGGTCATGAATTT 59.331 40.000 9.08 0.00 36.53 1.82
1749 1863 5.222870 AGTGATCCTCCTAGGTCATGAATT 58.777 41.667 9.08 0.00 36.53 2.17
1750 1864 4.825445 AGTGATCCTCCTAGGTCATGAAT 58.175 43.478 9.08 0.00 36.53 2.57
1751 1865 4.271807 AGTGATCCTCCTAGGTCATGAA 57.728 45.455 9.08 0.00 36.53 2.57
1752 1866 3.981516 AGTGATCCTCCTAGGTCATGA 57.018 47.619 9.08 0.00 36.53 3.07
1753 1867 3.829601 GGTAGTGATCCTCCTAGGTCATG 59.170 52.174 9.08 0.00 36.53 3.07
1754 1868 3.467483 TGGTAGTGATCCTCCTAGGTCAT 59.533 47.826 9.08 0.00 36.53 3.06
1755 1869 2.856864 TGGTAGTGATCCTCCTAGGTCA 59.143 50.000 9.08 1.77 36.53 4.02
1756 1870 3.138653 TCTGGTAGTGATCCTCCTAGGTC 59.861 52.174 9.08 0.00 36.53 3.85
1757 1871 3.132056 TCTGGTAGTGATCCTCCTAGGT 58.868 50.000 9.08 0.00 36.53 3.08
1758 1872 3.885976 TCTGGTAGTGATCCTCCTAGG 57.114 52.381 0.82 0.82 36.46 3.02
1759 1873 6.155393 AGTTTTTCTGGTAGTGATCCTCCTAG 59.845 42.308 0.00 0.00 0.00 3.02
1760 1874 6.023603 AGTTTTTCTGGTAGTGATCCTCCTA 58.976 40.000 0.00 0.00 0.00 2.94
1761 1875 4.846940 AGTTTTTCTGGTAGTGATCCTCCT 59.153 41.667 0.00 0.00 0.00 3.69
1762 1876 4.938226 CAGTTTTTCTGGTAGTGATCCTCC 59.062 45.833 0.00 0.00 40.23 4.30
1948 2089 1.008881 GCGATATGCCGACGACTGA 60.009 57.895 0.00 0.00 37.76 3.41
1950 2091 2.051256 CGCGATATGCCGACGACT 60.051 61.111 0.00 0.00 42.08 4.18
1952 2093 4.337060 CCCGCGATATGCCGACGA 62.337 66.667 8.23 0.00 42.08 4.20
2115 2256 1.872234 CGATGACGTGGCGTGGTAG 60.872 63.158 0.00 0.00 41.37 3.18
2117 2258 2.884087 GATCGATGACGTGGCGTGGT 62.884 60.000 0.54 0.00 41.37 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.