Multiple sequence alignment - TraesCS1A01G373100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G373100 chr1A 100.000 4726 0 0 1 4726 549361773 549357048 0.000000e+00 8728.0
1 TraesCS1A01G373100 chr1A 95.976 671 22 4 4056 4726 472156236 472155571 0.000000e+00 1085.0
2 TraesCS1A01G373100 chr1A 75.305 2458 454 113 1359 3729 119711804 119709413 0.000000e+00 1035.0
3 TraesCS1A01G373100 chr1A 91.837 196 16 0 1 196 593703433 593703628 1.680000e-69 274.0
4 TraesCS1A01G373100 chr1A 77.582 397 73 14 2709 3097 17010064 17010452 4.760000e-55 226.0
5 TraesCS1A01G373100 chr1D 93.696 3474 161 35 523 3973 455776115 455772677 0.000000e+00 5149.0
6 TraesCS1A01G373100 chr1D 75.388 2450 448 119 1359 3722 112470646 112468266 0.000000e+00 1040.0
7 TraesCS1A01G373100 chr1D 90.852 317 21 4 210 523 455776523 455776212 7.310000e-113 418.0
8 TraesCS1A01G373100 chr1D 94.388 196 11 0 1720 1915 394263956 394263761 7.690000e-78 302.0
9 TraesCS1A01G373100 chr1D 89.691 194 15 2 7 197 487593750 487593559 4.720000e-60 243.0
10 TraesCS1A01G373100 chr1D 75.676 518 106 17 2709 3213 16612165 16612675 1.700000e-59 241.0
11 TraesCS1A01G373100 chr1D 96.875 32 1 0 457 488 454768775 454768744 2.000000e-03 54.7
12 TraesCS1A01G373100 chr1B 92.519 3462 175 44 548 3972 626152283 626155697 0.000000e+00 4881.0
13 TraesCS1A01G373100 chr1B 75.102 2454 459 114 1359 3728 172009326 172006941 0.000000e+00 1007.0
14 TraesCS1A01G373100 chr1B 75.915 519 103 18 2709 3213 30545848 30546358 3.650000e-61 246.0
15 TraesCS1A01G373100 chr1B 100.000 28 0 0 4025 4052 446967566 446967593 9.000000e-03 52.8
16 TraesCS1A01G373100 chr7A 96.750 677 15 3 4056 4726 268486101 268485426 0.000000e+00 1122.0
17 TraesCS1A01G373100 chr7A 72.934 1803 372 88 1366 3098 549528538 549530294 1.950000e-143 520.0
18 TraesCS1A01G373100 chr7A 100.000 29 0 0 4024 4052 139542499 139542527 2.000000e-03 54.7
19 TraesCS1A01G373100 chr3A 96.460 678 16 3 4056 4726 64387783 64387107 0.000000e+00 1112.0
20 TraesCS1A01G373100 chr3A 74.267 614 119 34 2996 3602 722437357 722437938 6.160000e-54 222.0
21 TraesCS1A01G373100 chr2A 96.024 679 18 6 4056 4726 714191073 714190396 0.000000e+00 1096.0
22 TraesCS1A01G373100 chr2A 100.000 29 0 0 4024 4052 105177858 105177830 2.000000e-03 54.7
23 TraesCS1A01G373100 chr7D 95.870 678 20 4 4056 4726 613190762 613190086 0.000000e+00 1090.0
24 TraesCS1A01G373100 chr7D 73.045 1803 370 85 1366 3098 483140473 483142229 9.000000e-147 531.0
25 TraesCS1A01G373100 chr5D 95.846 674 24 3 4056 4726 303234434 303235106 0.000000e+00 1086.0
26 TraesCS1A01G373100 chr5D 90.863 197 18 0 1 197 467215757 467215953 1.010000e-66 265.0
27 TraesCS1A01G373100 chr5D 90.816 196 17 1 1 196 513048158 513048352 1.300000e-65 261.0
28 TraesCS1A01G373100 chr5D 89.744 195 17 3 4 196 560387051 560387244 3.650000e-61 246.0
29 TraesCS1A01G373100 chr5D 72.021 940 180 59 2322 3212 338388651 338389556 8.020000e-48 202.0
30 TraesCS1A01G373100 chr5D 86.598 97 11 2 3289 3384 543597140 543597045 6.470000e-19 106.0
31 TraesCS1A01G373100 chr5D 81.356 118 17 5 3278 3392 338389653 338389768 1.810000e-14 91.6
32 TraesCS1A01G373100 chr5B 95.461 683 18 8 4056 4726 130489800 130489119 0.000000e+00 1077.0
33 TraesCS1A01G373100 chr5B 71.825 937 184 58 2322 3212 397515536 397516438 1.340000e-45 195.0
34 TraesCS1A01G373100 chr5B 87.000 100 11 2 3286 3384 685436278 685436376 1.390000e-20 111.0
35 TraesCS1A01G373100 chr5B 81.416 113 17 4 3282 3392 397516520 397516630 6.510000e-14 89.8
36 TraesCS1A01G373100 chr6A 95.441 680 21 6 4056 4726 274102117 274102795 0.000000e+00 1075.0
37 TraesCS1A01G373100 chr6A 100.000 28 0 0 4025 4052 36937956 36937983 9.000000e-03 52.8
38 TraesCS1A01G373100 chr6A 100.000 28 0 0 4025 4052 459880816 459880843 9.000000e-03 52.8
39 TraesCS1A01G373100 chr6A 100.000 28 0 0 4025 4052 564497603 564497576 9.000000e-03 52.8
40 TraesCS1A01G373100 chr5A 95.421 677 24 4 4056 4726 477282073 477281398 0.000000e+00 1072.0
41 TraesCS1A01G373100 chr5A 91.371 197 16 1 1 197 540727868 540727673 7.800000e-68 268.0
42 TraesCS1A01G373100 chr5A 72.660 940 171 62 2322 3212 439376182 439377084 2.840000e-57 233.0
43 TraesCS1A01G373100 chr5A 100.000 28 0 0 4025 4052 70665693 70665720 9.000000e-03 52.8
44 TraesCS1A01G373100 chr5A 100.000 28 0 0 4025 4052 497575794 497575767 9.000000e-03 52.8
45 TraesCS1A01G373100 chr4B 73.319 1799 365 89 1367 3094 660353109 660354863 1.490000e-154 556.0
46 TraesCS1A01G373100 chr7B 73.100 1803 365 92 1366 3096 508657575 508659329 2.500000e-147 532.0
47 TraesCS1A01G373100 chr7B 89.848 197 14 3 1 196 612980199 612980008 1.020000e-61 248.0
48 TraesCS1A01G373100 chrUn 72.970 1798 377 87 1367 3096 156674931 156676687 1.160000e-145 527.0
49 TraesCS1A01G373100 chr4D 92.347 196 13 2 1 196 296669180 296669373 1.300000e-70 278.0
50 TraesCS1A01G373100 chr2D 90.674 193 17 1 4 196 646599333 646599142 6.070000e-64 255.0
51 TraesCS1A01G373100 chr4A 87.000 100 11 2 3286 3384 625534089 625534187 1.390000e-20 111.0
52 TraesCS1A01G373100 chr4A 100.000 28 0 0 4025 4052 683556565 683556538 9.000000e-03 52.8
53 TraesCS1A01G373100 chr3D 87.324 71 6 2 455 522 573906836 573906766 1.410000e-10 78.7
54 TraesCS1A01G373100 chr2B 100.000 30 0 0 974 1003 646227511 646227540 6.610000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G373100 chr1A 549357048 549361773 4725 True 8728.0 8728 100.000 1 4726 1 chr1A.!!$R3 4725
1 TraesCS1A01G373100 chr1A 472155571 472156236 665 True 1085.0 1085 95.976 4056 4726 1 chr1A.!!$R2 670
2 TraesCS1A01G373100 chr1A 119709413 119711804 2391 True 1035.0 1035 75.305 1359 3729 1 chr1A.!!$R1 2370
3 TraesCS1A01G373100 chr1D 455772677 455776523 3846 True 2783.5 5149 92.274 210 3973 2 chr1D.!!$R5 3763
4 TraesCS1A01G373100 chr1D 112468266 112470646 2380 True 1040.0 1040 75.388 1359 3722 1 chr1D.!!$R1 2363
5 TraesCS1A01G373100 chr1D 16612165 16612675 510 False 241.0 241 75.676 2709 3213 1 chr1D.!!$F1 504
6 TraesCS1A01G373100 chr1B 626152283 626155697 3414 False 4881.0 4881 92.519 548 3972 1 chr1B.!!$F3 3424
7 TraesCS1A01G373100 chr1B 172006941 172009326 2385 True 1007.0 1007 75.102 1359 3728 1 chr1B.!!$R1 2369
8 TraesCS1A01G373100 chr1B 30545848 30546358 510 False 246.0 246 75.915 2709 3213 1 chr1B.!!$F1 504
9 TraesCS1A01G373100 chr7A 268485426 268486101 675 True 1122.0 1122 96.750 4056 4726 1 chr7A.!!$R1 670
10 TraesCS1A01G373100 chr7A 549528538 549530294 1756 False 520.0 520 72.934 1366 3098 1 chr7A.!!$F2 1732
11 TraesCS1A01G373100 chr3A 64387107 64387783 676 True 1112.0 1112 96.460 4056 4726 1 chr3A.!!$R1 670
12 TraesCS1A01G373100 chr3A 722437357 722437938 581 False 222.0 222 74.267 2996 3602 1 chr3A.!!$F1 606
13 TraesCS1A01G373100 chr2A 714190396 714191073 677 True 1096.0 1096 96.024 4056 4726 1 chr2A.!!$R2 670
14 TraesCS1A01G373100 chr7D 613190086 613190762 676 True 1090.0 1090 95.870 4056 4726 1 chr7D.!!$R1 670
15 TraesCS1A01G373100 chr7D 483140473 483142229 1756 False 531.0 531 73.045 1366 3098 1 chr7D.!!$F1 1732
16 TraesCS1A01G373100 chr5D 303234434 303235106 672 False 1086.0 1086 95.846 4056 4726 1 chr5D.!!$F1 670
17 TraesCS1A01G373100 chr5B 130489119 130489800 681 True 1077.0 1077 95.461 4056 4726 1 chr5B.!!$R1 670
18 TraesCS1A01G373100 chr6A 274102117 274102795 678 False 1075.0 1075 95.441 4056 4726 1 chr6A.!!$F2 670
19 TraesCS1A01G373100 chr5A 477281398 477282073 675 True 1072.0 1072 95.421 4056 4726 1 chr5A.!!$R1 670
20 TraesCS1A01G373100 chr5A 439376182 439377084 902 False 233.0 233 72.660 2322 3212 1 chr5A.!!$F2 890
21 TraesCS1A01G373100 chr4B 660353109 660354863 1754 False 556.0 556 73.319 1367 3094 1 chr4B.!!$F1 1727
22 TraesCS1A01G373100 chr7B 508657575 508659329 1754 False 532.0 532 73.100 1366 3096 1 chr7B.!!$F1 1730
23 TraesCS1A01G373100 chrUn 156674931 156676687 1756 False 527.0 527 72.970 1367 3096 1 chrUn.!!$F1 1729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 740 0.455410 CACCGCTTCTCCTCTCAGAG 59.545 60.000 0.00 0.00 35.04 3.35 F
1125 1229 1.065251 GGCTTCCTCTTACCTCGTACG 59.935 57.143 9.53 9.53 0.00 3.67 F
1299 1406 1.075374 ACTTTTAGCCATGCCTGACCA 59.925 47.619 0.00 0.00 0.00 4.02 F
3229 3446 1.844497 GGTAACCCATGCCTTAGACCT 59.156 52.381 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1585 1704 2.204136 ATGGGGAGCCACTGGTCA 60.204 61.111 0.00 0.00 40.83 4.02 R
2819 3020 2.100631 CGTTGATGTCCTCCACGGC 61.101 63.158 0.00 0.00 38.87 5.68 R
3277 3510 0.933047 CTCGTCGTCGACTGCAAACA 60.933 55.000 22.18 0.81 41.35 2.83 R
4382 4642 1.747355 CATGAGATTGTGCAACTCCCC 59.253 52.381 0.00 0.00 38.04 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 4.857251 CCCGACTTGGCTGATACC 57.143 61.111 0.00 0.00 35.87 2.73
57 58 1.904771 CCCGACTTGGCTGATACCA 59.095 57.895 0.00 0.00 38.16 3.25
58 59 0.469917 CCCGACTTGGCTGATACCAT 59.530 55.000 0.00 0.00 40.13 3.55
59 60 1.586422 CCGACTTGGCTGATACCATG 58.414 55.000 0.00 0.00 40.13 3.66
61 62 2.632377 CGACTTGGCTGATACCATGTT 58.368 47.619 3.91 0.00 45.34 2.71
62 63 2.352651 CGACTTGGCTGATACCATGTTG 59.647 50.000 3.91 3.59 45.34 3.33
63 64 3.609853 GACTTGGCTGATACCATGTTGA 58.390 45.455 3.91 0.00 45.34 3.18
64 65 4.009675 GACTTGGCTGATACCATGTTGAA 58.990 43.478 3.91 0.00 45.34 2.69
65 66 4.406456 ACTTGGCTGATACCATGTTGAAA 58.594 39.130 0.00 0.00 43.50 2.69
66 67 5.018809 ACTTGGCTGATACCATGTTGAAAT 58.981 37.500 0.00 0.00 43.50 2.17
67 68 6.186957 ACTTGGCTGATACCATGTTGAAATA 58.813 36.000 0.00 0.00 43.50 1.40
68 69 6.095440 ACTTGGCTGATACCATGTTGAAATAC 59.905 38.462 0.00 0.00 43.50 1.89
69 70 5.504853 TGGCTGATACCATGTTGAAATACA 58.495 37.500 0.00 0.00 33.75 2.29
70 71 6.128486 TGGCTGATACCATGTTGAAATACAT 58.872 36.000 0.00 0.00 39.27 2.29
81 82 7.790782 ATGTTGAAATACATGGTTTAGGGTT 57.209 32.000 0.00 0.00 37.36 4.11
82 83 7.604657 TGTTGAAATACATGGTTTAGGGTTT 57.395 32.000 0.00 0.00 0.00 3.27
83 84 8.024145 TGTTGAAATACATGGTTTAGGGTTTT 57.976 30.769 0.00 0.00 0.00 2.43
84 85 7.928706 TGTTGAAATACATGGTTTAGGGTTTTG 59.071 33.333 0.00 0.00 0.00 2.44
85 86 6.459923 TGAAATACATGGTTTAGGGTTTTGC 58.540 36.000 0.00 0.00 0.00 3.68
86 87 4.712122 ATACATGGTTTAGGGTTTTGCG 57.288 40.909 0.00 0.00 0.00 4.85
87 88 2.312390 ACATGGTTTAGGGTTTTGCGT 58.688 42.857 0.00 0.00 0.00 5.24
88 89 2.035321 ACATGGTTTAGGGTTTTGCGTG 59.965 45.455 0.00 0.00 0.00 5.34
89 90 2.054232 TGGTTTAGGGTTTTGCGTGA 57.946 45.000 0.00 0.00 0.00 4.35
90 91 1.950909 TGGTTTAGGGTTTTGCGTGAG 59.049 47.619 0.00 0.00 0.00 3.51
91 92 1.951602 GGTTTAGGGTTTTGCGTGAGT 59.048 47.619 0.00 0.00 0.00 3.41
92 93 2.287368 GGTTTAGGGTTTTGCGTGAGTG 60.287 50.000 0.00 0.00 0.00 3.51
93 94 2.614983 GTTTAGGGTTTTGCGTGAGTGA 59.385 45.455 0.00 0.00 0.00 3.41
94 95 2.851263 TAGGGTTTTGCGTGAGTGAT 57.149 45.000 0.00 0.00 0.00 3.06
95 96 1.981256 AGGGTTTTGCGTGAGTGATT 58.019 45.000 0.00 0.00 0.00 2.57
96 97 1.608590 AGGGTTTTGCGTGAGTGATTG 59.391 47.619 0.00 0.00 0.00 2.67
97 98 1.606668 GGGTTTTGCGTGAGTGATTGA 59.393 47.619 0.00 0.00 0.00 2.57
98 99 2.228822 GGGTTTTGCGTGAGTGATTGAT 59.771 45.455 0.00 0.00 0.00 2.57
99 100 3.438781 GGGTTTTGCGTGAGTGATTGATA 59.561 43.478 0.00 0.00 0.00 2.15
100 101 4.096382 GGGTTTTGCGTGAGTGATTGATAT 59.904 41.667 0.00 0.00 0.00 1.63
101 102 5.266242 GGTTTTGCGTGAGTGATTGATATC 58.734 41.667 0.00 0.00 0.00 1.63
102 103 5.266242 GTTTTGCGTGAGTGATTGATATCC 58.734 41.667 0.00 0.00 0.00 2.59
103 104 3.817709 TGCGTGAGTGATTGATATCCA 57.182 42.857 0.00 0.00 0.00 3.41
104 105 3.721035 TGCGTGAGTGATTGATATCCAG 58.279 45.455 0.00 0.00 0.00 3.86
105 106 2.478134 GCGTGAGTGATTGATATCCAGC 59.522 50.000 0.00 0.00 0.00 4.85
106 107 3.062763 CGTGAGTGATTGATATCCAGCC 58.937 50.000 0.00 0.00 0.00 4.85
107 108 3.244009 CGTGAGTGATTGATATCCAGCCT 60.244 47.826 0.00 0.00 0.00 4.58
108 109 4.314121 GTGAGTGATTGATATCCAGCCTC 58.686 47.826 0.00 2.56 0.00 4.70
109 110 3.969312 TGAGTGATTGATATCCAGCCTCA 59.031 43.478 0.00 4.98 0.00 3.86
110 111 4.202295 TGAGTGATTGATATCCAGCCTCAC 60.202 45.833 0.00 6.26 33.97 3.51
111 112 3.062763 GTGATTGATATCCAGCCTCACG 58.937 50.000 0.00 0.00 0.00 4.35
112 113 2.700371 TGATTGATATCCAGCCTCACGT 59.300 45.455 0.00 0.00 0.00 4.49
113 114 2.890808 TTGATATCCAGCCTCACGTC 57.109 50.000 0.00 0.00 0.00 4.34
114 115 2.073252 TGATATCCAGCCTCACGTCT 57.927 50.000 0.00 0.00 0.00 4.18
115 116 1.957177 TGATATCCAGCCTCACGTCTC 59.043 52.381 0.00 0.00 0.00 3.36
116 117 1.957177 GATATCCAGCCTCACGTCTCA 59.043 52.381 0.00 0.00 0.00 3.27
117 118 1.847328 TATCCAGCCTCACGTCTCAA 58.153 50.000 0.00 0.00 0.00 3.02
118 119 1.198713 ATCCAGCCTCACGTCTCAAT 58.801 50.000 0.00 0.00 0.00 2.57
119 120 1.847328 TCCAGCCTCACGTCTCAATA 58.153 50.000 0.00 0.00 0.00 1.90
120 121 2.388735 TCCAGCCTCACGTCTCAATAT 58.611 47.619 0.00 0.00 0.00 1.28
121 122 3.562182 TCCAGCCTCACGTCTCAATATA 58.438 45.455 0.00 0.00 0.00 0.86
122 123 4.152647 TCCAGCCTCACGTCTCAATATAT 58.847 43.478 0.00 0.00 0.00 0.86
123 124 5.321927 TCCAGCCTCACGTCTCAATATATA 58.678 41.667 0.00 0.00 0.00 0.86
124 125 5.416013 TCCAGCCTCACGTCTCAATATATAG 59.584 44.000 0.00 0.00 0.00 1.31
125 126 5.416013 CCAGCCTCACGTCTCAATATATAGA 59.584 44.000 0.00 0.00 0.00 1.98
126 127 6.096141 CCAGCCTCACGTCTCAATATATAGAT 59.904 42.308 0.00 0.00 0.00 1.98
127 128 6.971756 CAGCCTCACGTCTCAATATATAGATG 59.028 42.308 3.96 3.96 35.32 2.90
128 129 6.887002 AGCCTCACGTCTCAATATATAGATGA 59.113 38.462 10.46 0.00 33.74 2.92
129 130 7.559533 AGCCTCACGTCTCAATATATAGATGAT 59.440 37.037 10.46 0.00 33.74 2.45
130 131 7.860373 GCCTCACGTCTCAATATATAGATGATC 59.140 40.741 10.46 0.00 33.74 2.92
131 132 8.897752 CCTCACGTCTCAATATATAGATGATCA 58.102 37.037 10.46 0.00 33.74 2.92
132 133 9.715123 CTCACGTCTCAATATATAGATGATCAC 57.285 37.037 0.00 0.00 33.74 3.06
133 134 9.231297 TCACGTCTCAATATATAGATGATCACA 57.769 33.333 0.00 0.00 33.74 3.58
134 135 9.846248 CACGTCTCAATATATAGATGATCACAA 57.154 33.333 0.00 0.00 33.74 3.33
203 204 7.598759 TTAGATCCTACTTTACATCCCTCAC 57.401 40.000 0.00 0.00 0.00 3.51
204 205 5.782925 AGATCCTACTTTACATCCCTCACT 58.217 41.667 0.00 0.00 0.00 3.41
205 206 5.600484 AGATCCTACTTTACATCCCTCACTG 59.400 44.000 0.00 0.00 0.00 3.66
206 207 4.684724 TCCTACTTTACATCCCTCACTGT 58.315 43.478 0.00 0.00 0.00 3.55
207 208 4.466370 TCCTACTTTACATCCCTCACTGTG 59.534 45.833 0.17 0.17 0.00 3.66
208 209 4.223032 CCTACTTTACATCCCTCACTGTGT 59.777 45.833 7.79 0.00 0.00 3.72
301 302 3.300711 TCGACAGACTCGACACTCA 57.699 52.632 0.00 0.00 46.75 3.41
312 313 1.546029 TCGACACTCAGACATTGGGAG 59.454 52.381 0.00 0.00 34.85 4.30
317 318 1.701847 ACTCAGACATTGGGAGCAGTT 59.298 47.619 0.00 0.00 31.88 3.16
332 333 1.336240 GCAGTTGGTTTGTGGCTCATC 60.336 52.381 0.00 0.00 0.00 2.92
336 337 2.064434 TGGTTTGTGGCTCATCAACA 57.936 45.000 6.49 0.00 0.00 3.33
341 342 4.815846 GGTTTGTGGCTCATCAACATTTTT 59.184 37.500 6.49 0.00 0.00 1.94
346 347 8.674263 TTGTGGCTCATCAACATTTTTATTTT 57.326 26.923 0.00 0.00 0.00 1.82
354 355 7.496920 TCATCAACATTTTTATTTTGCACCACA 59.503 29.630 0.00 0.00 0.00 4.17
360 361 5.415415 TTTTATTTTGCACCACATGTTGC 57.585 34.783 14.36 14.36 0.00 4.17
373 374 3.000122 CACATGTTGCGGTTGAACTTTTG 60.000 43.478 0.00 0.00 0.00 2.44
376 377 3.654414 TGTTGCGGTTGAACTTTTGTTT 58.346 36.364 0.00 0.00 43.66 2.83
377 378 4.058817 TGTTGCGGTTGAACTTTTGTTTT 58.941 34.783 0.00 0.00 43.66 2.43
378 379 5.227908 TGTTGCGGTTGAACTTTTGTTTTA 58.772 33.333 0.00 0.00 43.66 1.52
379 380 5.869888 TGTTGCGGTTGAACTTTTGTTTTAT 59.130 32.000 0.00 0.00 43.66 1.40
380 381 6.369065 TGTTGCGGTTGAACTTTTGTTTTATT 59.631 30.769 0.00 0.00 43.66 1.40
413 414 3.016031 TGCTTGCAGTTGAGAAAGTTGA 58.984 40.909 0.00 0.00 0.00 3.18
489 490 5.765176 TCAATCGACTGAGACTTAACGAAA 58.235 37.500 0.00 0.00 33.77 3.46
499 500 7.599245 ACTGAGACTTAACGAAATCTTAGTTGG 59.401 37.037 0.00 0.00 35.22 3.77
503 504 8.583296 AGACTTAACGAAATCTTAGTTGGTACT 58.417 33.333 0.00 0.00 38.44 2.73
539 638 8.924303 TCTTACATGACAATATACCACTAAGCT 58.076 33.333 0.00 0.00 0.00 3.74
571 670 3.475575 TGCAACATCTAGAAAGCACACA 58.524 40.909 0.00 0.00 0.00 3.72
640 740 0.455410 CACCGCTTCTCCTCTCAGAG 59.545 60.000 0.00 0.00 35.04 3.35
674 774 4.099113 GCGGGTAGTAAAATCTAGGACTGT 59.901 45.833 0.00 0.00 0.00 3.55
687 787 6.576662 TCTAGGACTGTTGACTGACTAAAG 57.423 41.667 0.00 0.00 0.00 1.85
699 799 9.058424 GTTGACTGACTAAAGTAAACAAACAAC 57.942 33.333 0.00 0.00 40.15 3.32
713 813 4.862371 ACAAACAACCTGGAAGAACCTTA 58.138 39.130 0.00 0.00 39.86 2.69
739 839 3.526931 TCTTGCGCTAGCTGTTCTAAT 57.473 42.857 14.31 0.00 45.42 1.73
774 874 2.036089 CCTCGATACCTTTCAGTAGCCC 59.964 54.545 0.00 0.00 0.00 5.19
1009 1113 1.387539 GAAGAAGAAGATGGCCCAGC 58.612 55.000 0.00 0.00 0.00 4.85
1070 1174 3.760035 CCTGTCCGTCACCTCCGG 61.760 72.222 0.00 0.00 46.83 5.14
1125 1229 1.065251 GGCTTCCTCTTACCTCGTACG 59.935 57.143 9.53 9.53 0.00 3.67
1134 1241 4.701765 TCTTACCTCGTACGCTCTTCTAT 58.298 43.478 11.24 0.00 0.00 1.98
1141 1248 5.852229 CCTCGTACGCTCTTCTATAATGTTC 59.148 44.000 11.24 0.00 0.00 3.18
1226 1333 5.090139 AGAGTCTTCTCCTGGATCAAGAAA 58.910 41.667 16.05 0.00 41.26 2.52
1245 1352 4.641989 AGAAACTGTCATTCTGCAACAACT 59.358 37.500 0.00 0.00 35.85 3.16
1286 1393 8.618952 CGCTAGAAATTTCGTTGAAACTTTTAG 58.381 33.333 12.42 5.64 32.51 1.85
1298 1405 1.839424 ACTTTTAGCCATGCCTGACC 58.161 50.000 0.00 0.00 0.00 4.02
1299 1406 1.075374 ACTTTTAGCCATGCCTGACCA 59.925 47.619 0.00 0.00 0.00 4.02
1559 1678 2.762875 CCTACCTCCCCACCGACC 60.763 72.222 0.00 0.00 0.00 4.79
1891 2010 2.444624 CGTGTTCGAGGCCATCACG 61.445 63.158 17.96 17.96 43.77 4.35
2014 2145 2.509561 GAGAGAAAGGCGGCCGAC 60.510 66.667 33.48 30.81 0.00 4.79
2542 2695 2.280592 GGCGACAACCACCTCGTT 60.281 61.111 0.00 0.00 32.30 3.85
3160 3373 2.282674 ACCGACTACGTCAGGGCA 60.283 61.111 0.00 0.00 37.88 5.36
3216 3433 3.747708 GCCAAGACCATGATAGGTAACCC 60.748 52.174 0.00 0.00 43.38 4.11
3219 3436 4.982241 AGACCATGATAGGTAACCCATG 57.018 45.455 0.00 0.00 43.38 3.66
3220 3437 3.073062 AGACCATGATAGGTAACCCATGC 59.927 47.826 0.00 0.00 43.38 4.06
3221 3438 2.108250 ACCATGATAGGTAACCCATGCC 59.892 50.000 0.00 0.00 40.98 4.40
3223 3440 3.181429 CCATGATAGGTAACCCATGCCTT 60.181 47.826 0.00 0.00 42.17 4.35
3224 3441 4.042809 CCATGATAGGTAACCCATGCCTTA 59.957 45.833 0.00 0.00 42.17 2.69
3225 3442 4.974645 TGATAGGTAACCCATGCCTTAG 57.025 45.455 0.00 0.00 42.17 2.18
3226 3443 4.562767 TGATAGGTAACCCATGCCTTAGA 58.437 43.478 0.00 0.00 42.17 2.10
3229 3446 1.844497 GGTAACCCATGCCTTAGACCT 59.156 52.381 0.00 0.00 0.00 3.85
3232 3449 3.933861 AACCCATGCCTTAGACCTTAG 57.066 47.619 0.00 0.00 0.00 2.18
3244 3461 3.788227 AGACCTTAGTGCCATGTCAAA 57.212 42.857 0.00 0.00 0.00 2.69
3246 3463 3.327757 AGACCTTAGTGCCATGTCAAAGA 59.672 43.478 0.00 0.00 0.00 2.52
3249 3466 4.074970 CCTTAGTGCCATGTCAAAGAAGT 58.925 43.478 0.00 0.00 0.00 3.01
3251 3468 3.996150 AGTGCCATGTCAAAGAAGTTG 57.004 42.857 0.00 0.00 38.71 3.16
3252 3469 3.554934 AGTGCCATGTCAAAGAAGTTGA 58.445 40.909 0.00 0.00 44.20 3.18
3287 3520 3.446799 TGCTGACATTTTGTTTGCAGTC 58.553 40.909 0.00 0.00 35.28 3.51
3621 3854 2.203015 CTTACCCCATCGGCGTGG 60.203 66.667 17.80 17.80 39.05 4.94
3747 3986 6.358178 TGAAGAAGTAGGAGATCATCTACGT 58.642 40.000 15.27 13.42 40.36 3.57
3748 3987 7.506971 TGAAGAAGTAGGAGATCATCTACGTA 58.493 38.462 15.27 0.00 40.36 3.57
3749 3988 7.441760 TGAAGAAGTAGGAGATCATCTACGTAC 59.558 40.741 15.27 0.96 40.36 3.67
3750 3989 5.927689 AGAAGTAGGAGATCATCTACGTACG 59.072 44.000 15.01 15.01 40.36 3.67
3751 3990 5.465532 AGTAGGAGATCATCTACGTACGA 57.534 43.478 24.41 4.69 40.36 3.43
3752 3991 5.229423 AGTAGGAGATCATCTACGTACGAC 58.771 45.833 24.41 3.98 40.36 4.34
3753 3992 4.339872 AGGAGATCATCTACGTACGACT 57.660 45.455 24.41 2.35 30.89 4.18
3754 3993 5.465532 AGGAGATCATCTACGTACGACTA 57.534 43.478 24.41 6.46 30.89 2.59
3755 3994 5.229423 AGGAGATCATCTACGTACGACTAC 58.771 45.833 24.41 8.13 30.89 2.73
3767 4006 3.885358 GTACGACTACGATGCATGATGA 58.115 45.455 2.46 0.00 42.66 2.92
3768 4007 2.732366 ACGACTACGATGCATGATGAC 58.268 47.619 2.46 0.00 42.66 3.06
3817 4056 2.740447 CGATCAGGTGATATGTGCATGG 59.260 50.000 0.00 0.00 34.37 3.66
3818 4057 1.971481 TCAGGTGATATGTGCATGGC 58.029 50.000 0.00 0.00 0.00 4.40
3819 4058 0.956633 CAGGTGATATGTGCATGGCC 59.043 55.000 0.00 0.00 0.00 5.36
3820 4059 0.552363 AGGTGATATGTGCATGGCCA 59.448 50.000 8.56 8.56 0.00 5.36
3825 4064 2.174424 TGATATGTGCATGGCCAGGTTA 59.826 45.455 20.22 5.79 0.00 2.85
3827 4066 1.696063 ATGTGCATGGCCAGGTTATC 58.304 50.000 20.22 2.18 0.00 1.75
3829 4068 1.312815 GTGCATGGCCAGGTTATCTC 58.687 55.000 20.22 0.95 0.00 2.75
3842 4081 6.040878 CCAGGTTATCTCTCGTAAATTCGTT 58.959 40.000 0.00 0.00 0.00 3.85
3850 4089 3.605056 TCTCGTAAATTCGTTGCGTGTAG 59.395 43.478 0.00 0.00 44.65 2.74
3852 4091 2.765918 GTAAATTCGTTGCGTGTAGGC 58.234 47.619 0.00 0.00 0.00 3.93
3859 4110 1.745115 TTGCGTGTAGGCTGGATGC 60.745 57.895 0.00 0.63 41.94 3.91
3861 4112 2.464459 GCGTGTAGGCTGGATGCAC 61.464 63.158 0.00 0.00 45.15 4.57
3863 4114 1.079127 GTGTAGGCTGGATGCACGT 60.079 57.895 0.00 0.00 45.15 4.49
3891 4142 6.090628 GTGGTGGAACGTGTATAAACGATTTA 59.909 38.462 22.07 3.18 46.49 1.40
3892 4143 6.090628 TGGTGGAACGTGTATAAACGATTTAC 59.909 38.462 22.07 13.74 46.49 2.01
3893 4144 6.311200 GGTGGAACGTGTATAAACGATTTACT 59.689 38.462 22.07 0.00 46.49 2.24
3894 4145 7.487829 GGTGGAACGTGTATAAACGATTTACTA 59.512 37.037 22.07 3.86 46.49 1.82
3895 4146 8.313931 GTGGAACGTGTATAAACGATTTACTAC 58.686 37.037 22.07 11.10 46.49 2.73
3896 4147 8.243426 TGGAACGTGTATAAACGATTTACTACT 58.757 33.333 22.07 0.00 46.49 2.57
3897 4148 9.716507 GGAACGTGTATAAACGATTTACTACTA 57.283 33.333 22.07 0.00 46.49 1.82
3929 4180 4.439289 GCTTGTGAATTGGGATTGCTAGTC 60.439 45.833 0.00 0.00 0.00 2.59
3930 4181 4.574674 TGTGAATTGGGATTGCTAGTCT 57.425 40.909 0.00 0.00 0.00 3.24
3934 4185 4.701651 TGAATTGGGATTGCTAGTCTTGTG 59.298 41.667 0.00 0.00 0.00 3.33
3939 4190 5.428253 TGGGATTGCTAGTCTTGTGAATAC 58.572 41.667 0.00 0.00 0.00 1.89
3940 4191 5.045942 TGGGATTGCTAGTCTTGTGAATACA 60.046 40.000 0.00 0.00 34.31 2.29
3941 4192 5.525378 GGGATTGCTAGTCTTGTGAATACAG 59.475 44.000 0.00 0.00 38.23 2.74
3942 4193 5.525378 GGATTGCTAGTCTTGTGAATACAGG 59.475 44.000 0.00 0.00 38.23 4.00
3943 4194 4.471904 TGCTAGTCTTGTGAATACAGGG 57.528 45.455 0.00 0.00 38.23 4.45
3944 4195 3.838317 TGCTAGTCTTGTGAATACAGGGT 59.162 43.478 0.00 0.00 38.23 4.34
3945 4196 4.286032 TGCTAGTCTTGTGAATACAGGGTT 59.714 41.667 0.00 0.00 38.23 4.11
3961 4212 2.041216 AGGGTTGGGTTCTTACATCCAC 59.959 50.000 0.00 0.00 0.00 4.02
3973 4224 8.333186 GGTTCTTACATCCACGTAAAATCATAC 58.667 37.037 0.00 0.00 31.19 2.39
3974 4225 9.095065 GTTCTTACATCCACGTAAAATCATACT 57.905 33.333 0.00 0.00 31.19 2.12
3976 4227 9.740239 TCTTACATCCACGTAAAATCATACTAC 57.260 33.333 0.00 0.00 31.19 2.73
3977 4228 8.876275 TTACATCCACGTAAAATCATACTACC 57.124 34.615 0.00 0.00 0.00 3.18
3978 4229 7.120923 ACATCCACGTAAAATCATACTACCT 57.879 36.000 0.00 0.00 0.00 3.08
3979 4230 7.562135 ACATCCACGTAAAATCATACTACCTT 58.438 34.615 0.00 0.00 0.00 3.50
3980 4231 7.709613 ACATCCACGTAAAATCATACTACCTTC 59.290 37.037 0.00 0.00 0.00 3.46
3981 4232 6.267817 TCCACGTAAAATCATACTACCTTCG 58.732 40.000 0.00 0.00 0.00 3.79
3982 4233 6.038356 CCACGTAAAATCATACTACCTTCGT 58.962 40.000 0.00 0.00 0.00 3.85
3983 4234 6.197842 CCACGTAAAATCATACTACCTTCGTC 59.802 42.308 0.00 0.00 0.00 4.20
3984 4235 6.971184 CACGTAAAATCATACTACCTTCGTCT 59.029 38.462 0.00 0.00 0.00 4.18
3985 4236 7.165483 CACGTAAAATCATACTACCTTCGTCTC 59.835 40.741 0.00 0.00 0.00 3.36
3986 4237 6.356452 CGTAAAATCATACTACCTTCGTCTCG 59.644 42.308 0.00 0.00 0.00 4.04
3987 4238 4.832590 AATCATACTACCTTCGTCTCGG 57.167 45.455 0.00 0.00 0.00 4.63
3988 4239 3.272574 TCATACTACCTTCGTCTCGGT 57.727 47.619 0.00 0.00 37.31 4.69
3989 4240 2.941064 TCATACTACCTTCGTCTCGGTG 59.059 50.000 0.00 0.00 34.76 4.94
3990 4241 2.479566 TACTACCTTCGTCTCGGTGT 57.520 50.000 0.00 0.00 34.76 4.16
3991 4242 2.479566 ACTACCTTCGTCTCGGTGTA 57.520 50.000 0.00 0.00 34.76 2.90
3992 4243 2.783135 ACTACCTTCGTCTCGGTGTAA 58.217 47.619 0.00 0.00 34.76 2.41
3993 4244 3.149196 ACTACCTTCGTCTCGGTGTAAA 58.851 45.455 0.00 0.00 34.76 2.01
3994 4245 3.569701 ACTACCTTCGTCTCGGTGTAAAA 59.430 43.478 0.00 0.00 34.76 1.52
3995 4246 3.022607 ACCTTCGTCTCGGTGTAAAAG 57.977 47.619 0.00 0.00 30.90 2.27
3996 4247 2.363359 ACCTTCGTCTCGGTGTAAAAGT 59.637 45.455 0.00 0.00 30.90 2.66
3997 4248 2.985139 CCTTCGTCTCGGTGTAAAAGTC 59.015 50.000 0.00 0.00 0.00 3.01
3998 4249 3.551454 CCTTCGTCTCGGTGTAAAAGTCA 60.551 47.826 0.00 0.00 0.00 3.41
3999 4250 3.928727 TCGTCTCGGTGTAAAAGTCAT 57.071 42.857 0.00 0.00 0.00 3.06
4000 4251 3.829948 TCGTCTCGGTGTAAAAGTCATC 58.170 45.455 0.00 0.00 0.00 2.92
4001 4252 2.921754 CGTCTCGGTGTAAAAGTCATCC 59.078 50.000 0.00 0.00 0.00 3.51
4002 4253 2.921754 GTCTCGGTGTAAAAGTCATCCG 59.078 50.000 0.00 0.00 39.40 4.18
4003 4254 1.659098 CTCGGTGTAAAAGTCATCCGC 59.341 52.381 0.00 0.00 38.18 5.54
4004 4255 1.001068 TCGGTGTAAAAGTCATCCGCA 59.999 47.619 0.00 0.00 38.18 5.69
4005 4256 2.006888 CGGTGTAAAAGTCATCCGCAT 58.993 47.619 0.00 0.00 0.00 4.73
4006 4257 3.119065 TCGGTGTAAAAGTCATCCGCATA 60.119 43.478 0.00 0.00 38.18 3.14
4007 4258 3.245284 CGGTGTAAAAGTCATCCGCATAG 59.755 47.826 0.00 0.00 0.00 2.23
4008 4259 4.189231 GGTGTAAAAGTCATCCGCATAGT 58.811 43.478 0.00 0.00 0.00 2.12
4009 4260 4.634443 GGTGTAAAAGTCATCCGCATAGTT 59.366 41.667 0.00 0.00 0.00 2.24
4010 4261 5.123344 GGTGTAAAAGTCATCCGCATAGTTT 59.877 40.000 0.00 0.00 0.00 2.66
4011 4262 6.349033 GGTGTAAAAGTCATCCGCATAGTTTT 60.349 38.462 0.00 0.00 32.21 2.43
4012 4263 7.148373 GGTGTAAAAGTCATCCGCATAGTTTTA 60.148 37.037 0.00 0.00 30.54 1.52
4013 4264 7.903431 GTGTAAAAGTCATCCGCATAGTTTTAG 59.097 37.037 0.00 0.00 31.85 1.85
4014 4265 6.436843 AAAAGTCATCCGCATAGTTTTAGG 57.563 37.500 0.00 0.00 0.00 2.69
4015 4266 4.073293 AGTCATCCGCATAGTTTTAGGG 57.927 45.455 0.00 0.00 0.00 3.53
4016 4267 3.709653 AGTCATCCGCATAGTTTTAGGGA 59.290 43.478 0.00 0.00 0.00 4.20
4017 4268 3.808174 GTCATCCGCATAGTTTTAGGGAC 59.192 47.826 0.00 0.00 0.00 4.46
4018 4269 3.709653 TCATCCGCATAGTTTTAGGGACT 59.290 43.478 0.00 0.00 46.37 3.85
4019 4270 3.536956 TCCGCATAGTTTTAGGGACTG 57.463 47.619 0.00 0.00 41.52 3.51
4020 4271 2.835764 TCCGCATAGTTTTAGGGACTGT 59.164 45.455 0.00 0.00 41.52 3.55
4021 4272 3.118884 TCCGCATAGTTTTAGGGACTGTC 60.119 47.826 0.00 0.00 41.52 3.51
4022 4273 3.118738 CCGCATAGTTTTAGGGACTGTCT 60.119 47.826 7.85 0.00 41.52 3.41
4023 4274 4.098960 CCGCATAGTTTTAGGGACTGTCTA 59.901 45.833 7.85 0.00 41.52 2.59
4024 4275 5.221461 CCGCATAGTTTTAGGGACTGTCTAT 60.221 44.000 7.85 0.00 41.52 1.98
4025 4276 5.692204 CGCATAGTTTTAGGGACTGTCTATG 59.308 44.000 7.85 6.44 41.52 2.23
4026 4277 6.583562 GCATAGTTTTAGGGACTGTCTATGT 58.416 40.000 7.85 0.00 41.52 2.29
4027 4278 7.048512 GCATAGTTTTAGGGACTGTCTATGTT 58.951 38.462 7.85 0.00 41.52 2.71
4028 4279 7.011482 GCATAGTTTTAGGGACTGTCTATGTTG 59.989 40.741 7.85 0.00 41.52 3.33
4029 4280 5.805728 AGTTTTAGGGACTGTCTATGTTGG 58.194 41.667 7.85 0.00 41.52 3.77
4030 4281 4.837093 TTTAGGGACTGTCTATGTTGGG 57.163 45.455 7.85 0.00 41.52 4.12
4031 4282 1.584724 AGGGACTGTCTATGTTGGGG 58.415 55.000 7.85 0.00 37.18 4.96
4032 4283 1.080498 AGGGACTGTCTATGTTGGGGA 59.920 52.381 7.85 0.00 37.18 4.81
4033 4284 1.913419 GGGACTGTCTATGTTGGGGAA 59.087 52.381 7.85 0.00 0.00 3.97
4034 4285 2.355818 GGGACTGTCTATGTTGGGGAAC 60.356 54.545 7.85 0.00 0.00 3.62
4035 4286 2.618053 GACTGTCTATGTTGGGGAACG 58.382 52.381 0.00 0.00 0.00 3.95
4036 4287 1.975680 ACTGTCTATGTTGGGGAACGT 59.024 47.619 0.00 0.00 0.00 3.99
4037 4288 2.370849 ACTGTCTATGTTGGGGAACGTT 59.629 45.455 0.00 0.00 0.00 3.99
4038 4289 2.742053 CTGTCTATGTTGGGGAACGTTG 59.258 50.000 5.00 0.00 0.00 4.10
4039 4290 1.467342 GTCTATGTTGGGGAACGTTGC 59.533 52.381 11.85 11.85 0.00 4.17
4040 4291 1.072489 TCTATGTTGGGGAACGTTGCA 59.928 47.619 21.74 0.25 0.00 4.08
4041 4292 1.468520 CTATGTTGGGGAACGTTGCAG 59.531 52.381 21.74 4.45 0.00 4.41
4042 4293 0.179004 ATGTTGGGGAACGTTGCAGA 60.179 50.000 21.74 3.97 0.00 4.26
4043 4294 0.394488 TGTTGGGGAACGTTGCAGAA 60.394 50.000 21.74 10.10 0.00 3.02
4044 4295 0.741915 GTTGGGGAACGTTGCAGAAA 59.258 50.000 21.74 9.26 0.00 2.52
4045 4296 1.028905 TTGGGGAACGTTGCAGAAAG 58.971 50.000 21.74 0.00 0.00 2.62
4046 4297 1.285950 GGGGAACGTTGCAGAAAGC 59.714 57.895 21.74 2.56 45.96 3.51
4297 4557 1.172180 CGTGCCAACCCAACAGACAT 61.172 55.000 0.00 0.00 0.00 3.06
4555 4818 3.424703 CAATGTCCATGGTCAGGAAACT 58.575 45.455 16.79 0.00 46.44 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.469917 ATGGTATCAGCCAAGTCGGG 59.530 55.000 0.00 0.00 42.48 5.14
40 41 1.134401 ACATGGTATCAGCCAAGTCGG 60.134 52.381 0.00 0.00 42.48 4.79
41 42 2.315925 ACATGGTATCAGCCAAGTCG 57.684 50.000 0.00 0.00 42.48 4.18
42 43 3.609853 TCAACATGGTATCAGCCAAGTC 58.390 45.455 0.00 0.00 39.24 3.01
43 44 3.719268 TCAACATGGTATCAGCCAAGT 57.281 42.857 0.00 0.00 41.57 3.16
44 45 5.587388 ATTTCAACATGGTATCAGCCAAG 57.413 39.130 0.00 0.00 42.48 3.61
45 46 5.948758 TGTATTTCAACATGGTATCAGCCAA 59.051 36.000 0.00 0.00 42.48 4.52
46 47 5.504853 TGTATTTCAACATGGTATCAGCCA 58.495 37.500 0.00 0.00 43.48 4.75
47 48 6.639632 ATGTATTTCAACATGGTATCAGCC 57.360 37.500 0.00 0.00 38.65 4.85
57 58 7.790782 AACCCTAAACCATGTATTTCAACAT 57.209 32.000 0.00 0.00 40.75 2.71
58 59 7.604657 AAACCCTAAACCATGTATTTCAACA 57.395 32.000 0.00 0.00 0.00 3.33
59 60 7.095397 GCAAAACCCTAAACCATGTATTTCAAC 60.095 37.037 0.00 0.00 0.00 3.18
60 61 6.931840 GCAAAACCCTAAACCATGTATTTCAA 59.068 34.615 0.00 0.00 0.00 2.69
61 62 6.459923 GCAAAACCCTAAACCATGTATTTCA 58.540 36.000 0.00 0.00 0.00 2.69
62 63 5.575218 CGCAAAACCCTAAACCATGTATTTC 59.425 40.000 0.00 0.00 0.00 2.17
63 64 5.011227 ACGCAAAACCCTAAACCATGTATTT 59.989 36.000 0.00 0.00 0.00 1.40
64 65 4.525100 ACGCAAAACCCTAAACCATGTATT 59.475 37.500 0.00 0.00 0.00 1.89
65 66 4.082463 CACGCAAAACCCTAAACCATGTAT 60.082 41.667 0.00 0.00 0.00 2.29
66 67 3.253677 CACGCAAAACCCTAAACCATGTA 59.746 43.478 0.00 0.00 0.00 2.29
67 68 2.035321 CACGCAAAACCCTAAACCATGT 59.965 45.455 0.00 0.00 0.00 3.21
68 69 2.294791 TCACGCAAAACCCTAAACCATG 59.705 45.455 0.00 0.00 0.00 3.66
69 70 2.556622 CTCACGCAAAACCCTAAACCAT 59.443 45.455 0.00 0.00 0.00 3.55
70 71 1.950909 CTCACGCAAAACCCTAAACCA 59.049 47.619 0.00 0.00 0.00 3.67
71 72 1.951602 ACTCACGCAAAACCCTAAACC 59.048 47.619 0.00 0.00 0.00 3.27
72 73 2.614983 TCACTCACGCAAAACCCTAAAC 59.385 45.455 0.00 0.00 0.00 2.01
73 74 2.920524 TCACTCACGCAAAACCCTAAA 58.079 42.857 0.00 0.00 0.00 1.85
74 75 2.623878 TCACTCACGCAAAACCCTAA 57.376 45.000 0.00 0.00 0.00 2.69
75 76 2.811431 CAATCACTCACGCAAAACCCTA 59.189 45.455 0.00 0.00 0.00 3.53
76 77 1.608590 CAATCACTCACGCAAAACCCT 59.391 47.619 0.00 0.00 0.00 4.34
77 78 1.606668 TCAATCACTCACGCAAAACCC 59.393 47.619 0.00 0.00 0.00 4.11
78 79 3.559238 ATCAATCACTCACGCAAAACC 57.441 42.857 0.00 0.00 0.00 3.27
79 80 5.163764 TGGATATCAATCACTCACGCAAAAC 60.164 40.000 4.83 0.00 33.41 2.43
80 81 4.940654 TGGATATCAATCACTCACGCAAAA 59.059 37.500 4.83 0.00 33.41 2.44
81 82 4.512484 TGGATATCAATCACTCACGCAAA 58.488 39.130 4.83 0.00 33.41 3.68
82 83 4.122046 CTGGATATCAATCACTCACGCAA 58.878 43.478 4.83 0.00 33.41 4.85
83 84 3.721035 CTGGATATCAATCACTCACGCA 58.279 45.455 4.83 0.00 33.41 5.24
84 85 2.478134 GCTGGATATCAATCACTCACGC 59.522 50.000 4.83 0.00 33.41 5.34
85 86 3.062763 GGCTGGATATCAATCACTCACG 58.937 50.000 4.83 0.00 33.41 4.35
86 87 4.202295 TGAGGCTGGATATCAATCACTCAC 60.202 45.833 4.83 0.00 33.41 3.51
87 88 3.969312 TGAGGCTGGATATCAATCACTCA 59.031 43.478 4.83 8.35 33.41 3.41
88 89 4.314121 GTGAGGCTGGATATCAATCACTC 58.686 47.826 4.83 5.99 33.86 3.51
89 90 3.244009 CGTGAGGCTGGATATCAATCACT 60.244 47.826 4.83 0.00 34.19 3.41
90 91 3.062763 CGTGAGGCTGGATATCAATCAC 58.937 50.000 4.83 9.33 33.41 3.06
91 92 2.700371 ACGTGAGGCTGGATATCAATCA 59.300 45.455 4.83 0.00 33.41 2.57
92 93 3.321497 GACGTGAGGCTGGATATCAATC 58.679 50.000 4.83 0.00 34.96 2.67
93 94 3.393089 GACGTGAGGCTGGATATCAAT 57.607 47.619 4.83 0.00 34.96 2.57
94 95 2.890808 GACGTGAGGCTGGATATCAA 57.109 50.000 4.83 0.00 34.96 2.57
104 105 7.089770 TCATCTATATATTGAGACGTGAGGC 57.910 40.000 0.00 0.00 42.06 4.70
105 106 8.897752 TGATCATCTATATATTGAGACGTGAGG 58.102 37.037 0.00 0.00 0.00 3.86
106 107 9.715123 GTGATCATCTATATATTGAGACGTGAG 57.285 37.037 0.00 0.00 0.00 3.51
107 108 9.231297 TGTGATCATCTATATATTGAGACGTGA 57.769 33.333 0.00 2.70 0.00 4.35
108 109 9.846248 TTGTGATCATCTATATATTGAGACGTG 57.154 33.333 0.00 0.00 0.00 4.49
177 178 9.310449 GTGAGGGATGTAAAGTAGGATCTAATA 57.690 37.037 0.00 0.00 0.00 0.98
178 179 8.013667 AGTGAGGGATGTAAAGTAGGATCTAAT 58.986 37.037 0.00 0.00 0.00 1.73
179 180 7.287927 CAGTGAGGGATGTAAAGTAGGATCTAA 59.712 40.741 0.00 0.00 0.00 2.10
180 181 6.778069 CAGTGAGGGATGTAAAGTAGGATCTA 59.222 42.308 0.00 0.00 0.00 1.98
181 182 5.600484 CAGTGAGGGATGTAAAGTAGGATCT 59.400 44.000 0.00 0.00 0.00 2.75
182 183 5.364157 ACAGTGAGGGATGTAAAGTAGGATC 59.636 44.000 0.00 0.00 0.00 3.36
183 184 5.129485 CACAGTGAGGGATGTAAAGTAGGAT 59.871 44.000 0.00 0.00 0.00 3.24
184 185 4.466370 CACAGTGAGGGATGTAAAGTAGGA 59.534 45.833 0.00 0.00 0.00 2.94
185 186 4.223032 ACACAGTGAGGGATGTAAAGTAGG 59.777 45.833 7.81 0.00 0.00 3.18
186 187 5.407407 ACACAGTGAGGGATGTAAAGTAG 57.593 43.478 7.81 0.00 0.00 2.57
187 188 5.071250 ACAACACAGTGAGGGATGTAAAGTA 59.929 40.000 7.81 0.00 0.00 2.24
188 189 4.141482 ACAACACAGTGAGGGATGTAAAGT 60.141 41.667 7.81 0.00 0.00 2.66
189 190 4.214119 CACAACACAGTGAGGGATGTAAAG 59.786 45.833 7.81 0.00 42.05 1.85
190 191 4.133820 CACAACACAGTGAGGGATGTAAA 58.866 43.478 7.81 0.00 42.05 2.01
191 192 3.135712 ACACAACACAGTGAGGGATGTAA 59.864 43.478 7.81 0.00 42.05 2.41
192 193 2.703536 ACACAACACAGTGAGGGATGTA 59.296 45.455 7.81 0.00 42.05 2.29
193 194 1.490490 ACACAACACAGTGAGGGATGT 59.510 47.619 7.81 1.49 42.05 3.06
194 195 2.146342 GACACAACACAGTGAGGGATG 58.854 52.381 7.81 0.86 42.05 3.51
195 196 2.037772 GAGACACAACACAGTGAGGGAT 59.962 50.000 7.81 0.00 42.05 3.85
196 197 1.412710 GAGACACAACACAGTGAGGGA 59.587 52.381 7.81 0.00 42.05 4.20
197 198 1.138859 TGAGACACAACACAGTGAGGG 59.861 52.381 7.81 2.87 42.05 4.30
198 199 2.477825 CTGAGACACAACACAGTGAGG 58.522 52.381 7.81 0.88 42.05 3.86
199 200 2.477825 CCTGAGACACAACACAGTGAG 58.522 52.381 7.81 1.70 42.05 3.51
200 201 1.138859 CCCTGAGACACAACACAGTGA 59.861 52.381 7.81 0.00 42.05 3.41
201 202 1.586422 CCCTGAGACACAACACAGTG 58.414 55.000 0.00 0.00 44.93 3.66
202 203 0.469917 CCCCTGAGACACAACACAGT 59.530 55.000 0.00 0.00 0.00 3.55
203 204 0.758734 TCCCCTGAGACACAACACAG 59.241 55.000 0.00 0.00 0.00 3.66
204 205 0.758734 CTCCCCTGAGACACAACACA 59.241 55.000 0.00 0.00 41.42 3.72
205 206 0.035458 CCTCCCCTGAGACACAACAC 59.965 60.000 0.00 0.00 41.42 3.32
206 207 1.127567 CCCTCCCCTGAGACACAACA 61.128 60.000 0.00 0.00 41.42 3.33
207 208 1.128188 ACCCTCCCCTGAGACACAAC 61.128 60.000 0.00 0.00 41.42 3.32
208 209 0.836400 GACCCTCCCCTGAGACACAA 60.836 60.000 0.00 0.00 41.42 3.33
232 233 2.247267 GGTGAAAACCGACGCGTG 59.753 61.111 20.70 5.54 0.00 5.34
255 256 2.764128 TCTCCCCTCATCGCCCAC 60.764 66.667 0.00 0.00 0.00 4.61
301 302 0.773644 ACCAACTGCTCCCAATGTCT 59.226 50.000 0.00 0.00 0.00 3.41
312 313 0.675633 ATGAGCCACAAACCAACTGC 59.324 50.000 0.00 0.00 0.00 4.40
317 318 2.064434 TGTTGATGAGCCACAAACCA 57.936 45.000 0.00 0.00 0.00 3.67
332 333 7.416022 ACATGTGGTGCAAAATAAAAATGTTG 58.584 30.769 0.00 0.00 0.00 3.33
354 355 3.518634 ACAAAAGTTCAACCGCAACAT 57.481 38.095 0.00 0.00 0.00 2.71
392 393 3.016031 TCAACTTTCTCAACTGCAAGCA 58.984 40.909 0.00 0.00 37.60 3.91
393 394 3.698029 TCAACTTTCTCAACTGCAAGC 57.302 42.857 0.00 0.00 37.60 4.01
426 427 8.936864 CATTTTAGGAATTGACTAGACGACTTT 58.063 33.333 0.00 0.00 0.00 2.66
430 431 8.063200 TCTCATTTTAGGAATTGACTAGACGA 57.937 34.615 0.00 0.00 0.00 4.20
431 432 8.879342 ATCTCATTTTAGGAATTGACTAGACG 57.121 34.615 0.00 0.00 0.00 4.18
539 638 6.048732 TCTAGATGTTGCATACCACTCAAA 57.951 37.500 0.00 0.00 0.00 2.69
571 670 1.604604 TTACTGCTGCGGAAAAGCTT 58.395 45.000 16.72 0.00 41.42 3.74
640 740 2.046314 TACCCGCTGGCTGCTTTC 60.046 61.111 14.58 0.00 40.11 2.62
674 774 8.238631 GGTTGTTTGTTTACTTTAGTCAGTCAA 58.761 33.333 0.00 0.00 0.00 3.18
687 787 5.126545 AGGTTCTTCCAGGTTGTTTGTTTAC 59.873 40.000 0.00 0.00 39.02 2.01
699 799 4.657013 AGAAAAGCTAAGGTTCTTCCAGG 58.343 43.478 0.00 0.00 39.02 4.45
713 813 0.801251 CAGCTAGCGCAAGAAAAGCT 59.199 50.000 11.47 10.71 45.17 3.74
739 839 4.710375 GGTATCGAGGCAAGGGATCTTATA 59.290 45.833 0.00 0.00 0.00 0.98
793 893 6.294397 CCTTCCTTCCTTGAAGAACAATTCAG 60.294 42.308 5.43 0.00 41.71 3.02
964 1068 0.459934 CTCCTCGCCTTCTTCTGCTG 60.460 60.000 0.00 0.00 0.00 4.41
967 1071 0.459489 CTCCTCCTCGCCTTCTTCTG 59.541 60.000 0.00 0.00 0.00 3.02
968 1072 0.686112 CCTCCTCCTCGCCTTCTTCT 60.686 60.000 0.00 0.00 0.00 2.85
976 1080 0.684805 TTCTTCCTCCTCCTCCTCGC 60.685 60.000 0.00 0.00 0.00 5.03
1030 1134 1.153289 CCTCCAGGATCTTGGCGTG 60.153 63.158 18.84 10.84 38.16 5.34
1125 1229 8.885494 AATCACAGAGAACATTATAGAAGAGC 57.115 34.615 0.00 0.00 0.00 4.09
1134 1241 8.367911 ACTGTACTGAAATCACAGAGAACATTA 58.632 33.333 6.77 0.00 41.80 1.90
1141 1248 9.809096 ACATATTACTGTACTGAAATCACAGAG 57.191 33.333 6.77 0.00 41.80 3.35
1181 1288 6.393990 TCTCTTCTTCATAACAGTCTGCTTC 58.606 40.000 0.00 0.00 0.00 3.86
1214 1321 5.391736 GCAGAATGACAGTTTCTTGATCCAG 60.392 44.000 0.00 0.00 39.69 3.86
1226 1333 3.812053 GAGAGTTGTTGCAGAATGACAGT 59.188 43.478 0.00 0.00 39.69 3.55
1245 1352 3.096852 TCTAGCGAAATCCAACCTGAGA 58.903 45.455 0.00 0.00 0.00 3.27
1286 1393 2.796483 TACGTGTGGTCAGGCATGGC 62.796 60.000 12.14 12.14 33.37 4.40
1580 1699 2.829384 GGAGCCACTGGTCAACCCA 61.829 63.158 0.00 0.00 42.51 4.51
1585 1704 2.204136 ATGGGGAGCCACTGGTCA 60.204 61.111 0.00 0.00 40.83 4.02
1632 1751 4.873129 CGTGGATCCTGTCGCCGG 62.873 72.222 14.23 0.00 0.00 6.13
1891 2010 2.814913 AAACCATCCTCCGGGCGTTC 62.815 60.000 0.00 0.00 0.00 3.95
1909 2028 2.580276 GACCACCCGGCGATGTAA 59.420 61.111 9.30 0.00 34.57 2.41
1997 2128 2.509561 GTCGGCCGCCTTTCTCTC 60.510 66.667 23.51 0.00 0.00 3.20
2022 2153 2.359107 ACACCAGCATCAGCACCG 60.359 61.111 0.00 0.00 45.49 4.94
2669 2864 2.771639 CCGTCTCGAGGCCGATCAA 61.772 63.158 21.70 0.00 44.62 2.57
2819 3020 2.100631 CGTTGATGTCCTCCACGGC 61.101 63.158 0.00 0.00 38.87 5.68
3160 3373 4.586235 AAACGCCTGGCCTGCTGT 62.586 61.111 14.12 1.17 0.00 4.40
3216 3433 2.092968 TGGCACTAAGGTCTAAGGCATG 60.093 50.000 0.00 0.00 0.00 4.06
3219 3436 2.092914 ACATGGCACTAAGGTCTAAGGC 60.093 50.000 0.00 0.00 0.00 4.35
3220 3437 3.197766 TGACATGGCACTAAGGTCTAAGG 59.802 47.826 0.00 0.00 0.00 2.69
3221 3438 4.471904 TGACATGGCACTAAGGTCTAAG 57.528 45.455 0.00 0.00 0.00 2.18
3223 3440 4.530553 TCTTTGACATGGCACTAAGGTCTA 59.469 41.667 12.14 0.00 0.00 2.59
3224 3441 3.327757 TCTTTGACATGGCACTAAGGTCT 59.672 43.478 12.14 0.00 0.00 3.85
3225 3442 3.674997 TCTTTGACATGGCACTAAGGTC 58.325 45.455 12.14 0.00 0.00 3.85
3226 3443 3.788227 TCTTTGACATGGCACTAAGGT 57.212 42.857 12.14 0.00 0.00 3.50
3229 3446 5.129634 TCAACTTCTTTGACATGGCACTAA 58.870 37.500 0.00 0.00 39.45 2.24
3232 3449 3.988379 TCAACTTCTTTGACATGGCAC 57.012 42.857 0.00 0.00 39.45 5.01
3244 3461 6.070538 AGCAAGACATAGTACCATCAACTTCT 60.071 38.462 0.00 0.00 0.00 2.85
3246 3463 5.877012 CAGCAAGACATAGTACCATCAACTT 59.123 40.000 0.00 0.00 0.00 2.66
3249 3466 5.419542 GTCAGCAAGACATAGTACCATCAA 58.580 41.667 4.63 0.00 46.77 2.57
3277 3510 0.933047 CTCGTCGTCGACTGCAAACA 60.933 55.000 22.18 0.81 41.35 2.83
3278 3511 0.933509 ACTCGTCGTCGACTGCAAAC 60.934 55.000 22.18 3.25 41.35 2.93
3538 3771 1.589716 GAACATGTCCCAGTGCTGCC 61.590 60.000 0.00 0.00 0.00 4.85
3639 3872 3.112709 GAAGGCCGTCGTCTGCAC 61.113 66.667 1.94 0.00 0.00 4.57
3747 3986 3.314080 TGTCATCATGCATCGTAGTCGTA 59.686 43.478 0.00 0.00 38.33 3.43
3748 3987 2.099098 TGTCATCATGCATCGTAGTCGT 59.901 45.455 0.00 0.00 38.33 4.34
3749 3988 2.469147 GTGTCATCATGCATCGTAGTCG 59.531 50.000 0.00 0.00 38.55 4.18
3750 3989 3.488678 CAGTGTCATCATGCATCGTAGTC 59.511 47.826 0.00 0.00 0.00 2.59
3751 3990 3.451526 CAGTGTCATCATGCATCGTAGT 58.548 45.455 0.00 0.00 0.00 2.73
3752 3991 2.220363 GCAGTGTCATCATGCATCGTAG 59.780 50.000 0.00 0.00 39.75 3.51
3753 3992 2.159057 AGCAGTGTCATCATGCATCGTA 60.159 45.455 0.00 0.00 42.45 3.43
3754 3993 1.012086 GCAGTGTCATCATGCATCGT 58.988 50.000 0.00 0.00 39.75 3.73
3755 3994 1.260825 GAGCAGTGTCATCATGCATCG 59.739 52.381 0.00 0.00 42.45 3.84
3756 3995 1.260825 CGAGCAGTGTCATCATGCATC 59.739 52.381 0.00 0.00 42.45 3.91
3757 3996 1.296727 CGAGCAGTGTCATCATGCAT 58.703 50.000 0.00 0.00 42.45 3.96
3758 3997 0.037046 ACGAGCAGTGTCATCATGCA 60.037 50.000 9.46 0.00 42.45 3.96
3759 3998 1.081892 AACGAGCAGTGTCATCATGC 58.918 50.000 0.00 0.00 40.29 4.06
3760 3999 2.071540 ACAACGAGCAGTGTCATCATG 58.928 47.619 0.00 0.00 0.00 3.07
3761 4000 2.071540 CACAACGAGCAGTGTCATCAT 58.928 47.619 0.00 0.00 0.00 2.45
3762 4001 1.068434 TCACAACGAGCAGTGTCATCA 59.932 47.619 0.00 0.00 37.07 3.07
3763 4002 1.723542 CTCACAACGAGCAGTGTCATC 59.276 52.381 0.00 0.00 37.07 2.92
3764 4003 1.341209 TCTCACAACGAGCAGTGTCAT 59.659 47.619 0.00 0.00 41.98 3.06
3765 4004 0.744281 TCTCACAACGAGCAGTGTCA 59.256 50.000 0.00 0.00 41.98 3.58
3766 4005 1.723542 CATCTCACAACGAGCAGTGTC 59.276 52.381 0.00 0.00 41.98 3.67
3767 4006 1.606480 CCATCTCACAACGAGCAGTGT 60.606 52.381 0.00 0.00 41.98 3.55
3768 4007 1.073964 CCATCTCACAACGAGCAGTG 58.926 55.000 0.00 0.00 41.98 3.66
3789 4028 3.636764 ACATATCACCTGATCGCTGTGTA 59.363 43.478 8.39 3.07 36.05 2.90
3796 4035 2.740447 CCATGCACATATCACCTGATCG 59.260 50.000 0.00 0.00 36.05 3.69
3817 4056 4.444720 CGAATTTACGAGAGATAACCTGGC 59.555 45.833 0.00 0.00 35.09 4.85
3818 4057 5.589192 ACGAATTTACGAGAGATAACCTGG 58.411 41.667 0.00 0.00 37.03 4.45
3819 4058 6.508088 GCAACGAATTTACGAGAGATAACCTG 60.508 42.308 0.00 0.00 37.03 4.00
3820 4059 5.519206 GCAACGAATTTACGAGAGATAACCT 59.481 40.000 0.00 0.00 37.03 3.50
3825 4064 3.303495 CACGCAACGAATTTACGAGAGAT 59.697 43.478 0.00 0.00 37.03 2.75
3827 4066 2.407361 ACACGCAACGAATTTACGAGAG 59.593 45.455 0.00 0.00 37.03 3.20
3829 4068 2.848562 ACACGCAACGAATTTACGAG 57.151 45.000 0.00 0.00 37.03 4.18
3842 4081 2.125147 GCATCCAGCCTACACGCA 60.125 61.111 0.00 0.00 37.23 5.24
3850 4089 2.125673 ACGTACGTGCATCCAGCC 60.126 61.111 22.14 0.00 44.83 4.85
3852 4091 1.080093 ACCACGTACGTGCATCCAG 60.080 57.895 36.76 25.55 44.16 3.86
3859 4110 3.529504 CGTTCCACCACGTACGTG 58.470 61.111 35.57 35.57 45.02 4.49
3894 4145 8.880244 TCCCAATTCACAAGCTGTATATATAGT 58.120 33.333 8.15 0.00 0.00 2.12
3895 4146 9.896645 ATCCCAATTCACAAGCTGTATATATAG 57.103 33.333 2.25 2.25 0.00 1.31
3897 4148 9.017509 CAATCCCAATTCACAAGCTGTATATAT 57.982 33.333 0.00 0.00 0.00 0.86
3898 4149 7.040478 GCAATCCCAATTCACAAGCTGTATATA 60.040 37.037 0.00 0.00 0.00 0.86
3899 4150 6.239120 GCAATCCCAATTCACAAGCTGTATAT 60.239 38.462 0.00 0.00 0.00 0.86
3929 4180 3.154827 ACCCAACCCTGTATTCACAAG 57.845 47.619 0.00 0.00 33.22 3.16
3930 4181 3.139397 AGAACCCAACCCTGTATTCACAA 59.861 43.478 0.00 0.00 33.22 3.33
3934 4185 4.913784 TGTAAGAACCCAACCCTGTATTC 58.086 43.478 0.00 0.00 0.00 1.75
3939 4190 2.041081 TGGATGTAAGAACCCAACCCTG 59.959 50.000 0.00 0.00 0.00 4.45
3940 4191 2.041216 GTGGATGTAAGAACCCAACCCT 59.959 50.000 0.00 0.00 0.00 4.34
3941 4192 2.443416 GTGGATGTAAGAACCCAACCC 58.557 52.381 0.00 0.00 0.00 4.11
3942 4193 2.081462 CGTGGATGTAAGAACCCAACC 58.919 52.381 0.00 0.00 0.00 3.77
3943 4194 2.774687 ACGTGGATGTAAGAACCCAAC 58.225 47.619 0.00 0.00 0.00 3.77
3944 4195 4.620589 TTACGTGGATGTAAGAACCCAA 57.379 40.909 0.00 0.00 31.06 4.12
3945 4196 4.620589 TTTACGTGGATGTAAGAACCCA 57.379 40.909 0.00 0.00 35.85 4.51
3961 4212 6.356452 CGAGACGAAGGTAGTATGATTTTACG 59.644 42.308 0.00 0.00 0.00 3.18
3973 4224 3.837213 TTTACACCGAGACGAAGGTAG 57.163 47.619 0.00 0.00 39.00 3.18
3974 4225 3.569701 ACTTTTACACCGAGACGAAGGTA 59.430 43.478 0.00 0.00 39.00 3.08
3975 4226 2.363359 ACTTTTACACCGAGACGAAGGT 59.637 45.455 0.00 0.00 42.34 3.50
3976 4227 2.985139 GACTTTTACACCGAGACGAAGG 59.015 50.000 0.00 0.00 0.00 3.46
3977 4228 3.635331 TGACTTTTACACCGAGACGAAG 58.365 45.455 0.00 0.00 0.00 3.79
3978 4229 3.713858 TGACTTTTACACCGAGACGAA 57.286 42.857 0.00 0.00 0.00 3.85
3979 4230 3.366679 GGATGACTTTTACACCGAGACGA 60.367 47.826 0.00 0.00 0.00 4.20
3980 4231 2.921754 GGATGACTTTTACACCGAGACG 59.078 50.000 0.00 0.00 0.00 4.18
3981 4232 2.921754 CGGATGACTTTTACACCGAGAC 59.078 50.000 0.00 0.00 42.40 3.36
3982 4233 2.673043 GCGGATGACTTTTACACCGAGA 60.673 50.000 0.00 0.00 42.40 4.04
3983 4234 1.659098 GCGGATGACTTTTACACCGAG 59.341 52.381 0.00 0.00 42.40 4.63
3984 4235 1.001068 TGCGGATGACTTTTACACCGA 59.999 47.619 0.00 0.00 42.40 4.69
3985 4236 1.434555 TGCGGATGACTTTTACACCG 58.565 50.000 0.00 0.00 42.63 4.94
3986 4237 4.189231 ACTATGCGGATGACTTTTACACC 58.811 43.478 0.00 0.00 0.00 4.16
3987 4238 5.796350 AACTATGCGGATGACTTTTACAC 57.204 39.130 0.00 0.00 0.00 2.90
3988 4239 6.811253 AAAACTATGCGGATGACTTTTACA 57.189 33.333 0.00 0.00 0.00 2.41
3989 4240 7.407337 CCTAAAACTATGCGGATGACTTTTAC 58.593 38.462 0.00 0.00 0.00 2.01
3990 4241 6.540914 CCCTAAAACTATGCGGATGACTTTTA 59.459 38.462 0.00 4.27 0.00 1.52
3991 4242 5.357032 CCCTAAAACTATGCGGATGACTTTT 59.643 40.000 0.00 3.32 0.00 2.27
3992 4243 4.881850 CCCTAAAACTATGCGGATGACTTT 59.118 41.667 0.00 0.00 0.00 2.66
3993 4244 4.163458 TCCCTAAAACTATGCGGATGACTT 59.837 41.667 0.00 0.00 0.00 3.01
3994 4245 3.709653 TCCCTAAAACTATGCGGATGACT 59.290 43.478 0.00 0.00 0.00 3.41
3995 4246 3.808174 GTCCCTAAAACTATGCGGATGAC 59.192 47.826 0.00 0.00 0.00 3.06
3996 4247 3.709653 AGTCCCTAAAACTATGCGGATGA 59.290 43.478 0.00 0.00 0.00 2.92
3997 4248 3.809832 CAGTCCCTAAAACTATGCGGATG 59.190 47.826 0.00 0.00 0.00 3.51
3998 4249 3.454812 ACAGTCCCTAAAACTATGCGGAT 59.545 43.478 0.00 0.00 0.00 4.18
3999 4250 2.835764 ACAGTCCCTAAAACTATGCGGA 59.164 45.455 0.00 0.00 0.00 5.54
4000 4251 3.118738 AGACAGTCCCTAAAACTATGCGG 60.119 47.826 0.00 0.00 0.00 5.69
4001 4252 4.124851 AGACAGTCCCTAAAACTATGCG 57.875 45.455 0.00 0.00 0.00 4.73
4002 4253 6.583562 ACATAGACAGTCCCTAAAACTATGC 58.416 40.000 0.00 0.00 39.16 3.14
4003 4254 7.495934 CCAACATAGACAGTCCCTAAAACTATG 59.504 40.741 0.00 0.00 40.45 2.23
4004 4255 7.365652 CCCAACATAGACAGTCCCTAAAACTAT 60.366 40.741 0.00 0.00 0.00 2.12
4005 4256 6.070424 CCCAACATAGACAGTCCCTAAAACTA 60.070 42.308 0.00 0.00 0.00 2.24
4006 4257 5.280521 CCCAACATAGACAGTCCCTAAAACT 60.281 44.000 0.00 0.00 0.00 2.66
4007 4258 4.941873 CCCAACATAGACAGTCCCTAAAAC 59.058 45.833 0.00 0.00 0.00 2.43
4008 4259 4.018779 CCCCAACATAGACAGTCCCTAAAA 60.019 45.833 0.00 0.00 0.00 1.52
4009 4260 3.521937 CCCCAACATAGACAGTCCCTAAA 59.478 47.826 0.00 0.00 0.00 1.85
4010 4261 3.112263 CCCCAACATAGACAGTCCCTAA 58.888 50.000 0.00 0.00 0.00 2.69
4011 4262 2.316677 TCCCCAACATAGACAGTCCCTA 59.683 50.000 0.00 0.00 0.00 3.53
4012 4263 1.080498 TCCCCAACATAGACAGTCCCT 59.920 52.381 0.00 0.00 0.00 4.20
4013 4264 1.580059 TCCCCAACATAGACAGTCCC 58.420 55.000 0.00 0.00 0.00 4.46
4014 4265 2.677037 CGTTCCCCAACATAGACAGTCC 60.677 54.545 0.00 0.00 32.14 3.85
4015 4266 2.028385 ACGTTCCCCAACATAGACAGTC 60.028 50.000 0.00 0.00 32.14 3.51
4016 4267 1.975680 ACGTTCCCCAACATAGACAGT 59.024 47.619 0.00 0.00 32.14 3.55
4017 4268 2.742053 CAACGTTCCCCAACATAGACAG 59.258 50.000 0.00 0.00 32.14 3.51
4018 4269 2.773487 CAACGTTCCCCAACATAGACA 58.227 47.619 0.00 0.00 32.14 3.41
4019 4270 1.467342 GCAACGTTCCCCAACATAGAC 59.533 52.381 0.00 0.00 32.14 2.59
4020 4271 1.072489 TGCAACGTTCCCCAACATAGA 59.928 47.619 0.00 0.00 32.14 1.98
4021 4272 1.468520 CTGCAACGTTCCCCAACATAG 59.531 52.381 0.00 0.00 32.14 2.23
4022 4273 1.072489 TCTGCAACGTTCCCCAACATA 59.928 47.619 0.00 0.00 32.14 2.29
4023 4274 0.179004 TCTGCAACGTTCCCCAACAT 60.179 50.000 0.00 0.00 32.14 2.71
4024 4275 0.394488 TTCTGCAACGTTCCCCAACA 60.394 50.000 0.00 0.00 32.14 3.33
4025 4276 0.741915 TTTCTGCAACGTTCCCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
4026 4277 1.028905 CTTTCTGCAACGTTCCCCAA 58.971 50.000 0.00 0.00 0.00 4.12
4027 4278 1.452145 GCTTTCTGCAACGTTCCCCA 61.452 55.000 0.00 0.00 42.31 4.96
4028 4279 1.285950 GCTTTCTGCAACGTTCCCC 59.714 57.895 0.00 0.00 42.31 4.81
4029 4280 4.944249 GCTTTCTGCAACGTTCCC 57.056 55.556 0.00 0.00 42.31 3.97
4038 4289 3.320626 GGGATGACTTTTTGCTTTCTGC 58.679 45.455 0.00 0.00 43.25 4.26
4039 4290 3.004734 ACGGGATGACTTTTTGCTTTCTG 59.995 43.478 0.00 0.00 0.00 3.02
4040 4291 3.222603 ACGGGATGACTTTTTGCTTTCT 58.777 40.909 0.00 0.00 0.00 2.52
4041 4292 3.643159 ACGGGATGACTTTTTGCTTTC 57.357 42.857 0.00 0.00 0.00 2.62
4042 4293 5.708230 TGTATACGGGATGACTTTTTGCTTT 59.292 36.000 0.00 0.00 0.00 3.51
4043 4294 5.250200 TGTATACGGGATGACTTTTTGCTT 58.750 37.500 0.00 0.00 0.00 3.91
4044 4295 4.839121 TGTATACGGGATGACTTTTTGCT 58.161 39.130 0.00 0.00 0.00 3.91
4045 4296 5.554822 TTGTATACGGGATGACTTTTTGC 57.445 39.130 0.00 0.00 0.00 3.68
4046 4297 7.193595 GGAATTGTATACGGGATGACTTTTTG 58.806 38.462 0.00 0.00 0.00 2.44
4047 4298 6.320418 GGGAATTGTATACGGGATGACTTTTT 59.680 38.462 0.00 0.00 0.00 1.94
4048 4299 5.826208 GGGAATTGTATACGGGATGACTTTT 59.174 40.000 0.00 0.00 0.00 2.27
4049 4300 5.132144 AGGGAATTGTATACGGGATGACTTT 59.868 40.000 0.00 0.00 0.00 2.66
4050 4301 4.658901 AGGGAATTGTATACGGGATGACTT 59.341 41.667 0.00 0.00 0.00 3.01
4051 4302 4.232091 AGGGAATTGTATACGGGATGACT 58.768 43.478 0.00 0.00 0.00 3.41
4052 4303 4.618920 AGGGAATTGTATACGGGATGAC 57.381 45.455 0.00 0.00 0.00 3.06
4053 4304 5.104277 ACAAAGGGAATTGTATACGGGATGA 60.104 40.000 0.00 0.00 41.56 2.92
4054 4305 5.130350 ACAAAGGGAATTGTATACGGGATG 58.870 41.667 0.00 0.00 41.56 3.51
4297 4557 4.895668 ACACTACGGGTATCTCCAAAAA 57.104 40.909 0.00 0.00 38.11 1.94
4351 4611 1.799258 GAGTGCTTTGGGTGTGCCAG 61.799 60.000 0.00 0.00 36.17 4.85
4382 4642 1.747355 CATGAGATTGTGCAACTCCCC 59.253 52.381 0.00 0.00 38.04 4.81
4555 4818 5.753438 GCTCGTTGATCAATAGATGGTTACA 59.247 40.000 19.51 0.00 33.72 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.