Multiple sequence alignment - TraesCS1A01G372800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G372800 chr1A 100.000 4109 0 0 1 4109 549289085 549284977 0.000000e+00 7589.0
1 TraesCS1A01G372800 chr1D 92.211 3107 181 20 1032 4109 455653316 455650242 0.000000e+00 4340.0
2 TraesCS1A01G372800 chr1B 91.623 2459 159 25 1032 3462 626069662 626067223 0.000000e+00 3356.0
3 TraesCS1A01G372800 chr1B 88.274 614 46 5 3513 4109 626067212 626066608 0.000000e+00 712.0
4 TraesCS1A01G372800 chrUn 75.054 930 137 56 1 898 32217873 32217007 1.090000e-90 344.0
5 TraesCS1A01G372800 chr6D 73.948 879 156 48 64 918 397889283 397888454 1.870000e-73 287.0
6 TraesCS1A01G372800 chr6D 73.583 935 166 54 64 964 375833264 375832377 2.420000e-72 283.0
7 TraesCS1A01G372800 chr2B 73.551 949 156 70 61 964 762023825 762024723 1.460000e-69 274.0
8 TraesCS1A01G372800 chr5B 79.365 378 69 7 573 947 459493769 459493398 1.470000e-64 257.0
9 TraesCS1A01G372800 chr5B 84.862 218 23 6 19 227 686427127 686427343 1.160000e-50 211.0
10 TraesCS1A01G372800 chr7B 75.099 506 85 26 61 550 593431234 593431714 9.010000e-47 198.0
11 TraesCS1A01G372800 chr2A 83.444 151 17 2 64 213 766644674 766644531 2.580000e-27 134.0
12 TraesCS1A01G372800 chr5D 82.468 154 19 2 61 213 458865715 458865861 1.200000e-25 128.0
13 TraesCS1A01G372800 chr2D 84.444 135 13 2 64 197 629980933 629980806 4.310000e-25 126.0
14 TraesCS1A01G372800 chr2D 84.536 97 8 1 60 156 61361224 61361135 5.660000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G372800 chr1A 549284977 549289085 4108 True 7589 7589 100.0000 1 4109 1 chr1A.!!$R1 4108
1 TraesCS1A01G372800 chr1D 455650242 455653316 3074 True 4340 4340 92.2110 1032 4109 1 chr1D.!!$R1 3077
2 TraesCS1A01G372800 chr1B 626066608 626069662 3054 True 2034 3356 89.9485 1032 4109 2 chr1B.!!$R1 3077
3 TraesCS1A01G372800 chrUn 32217007 32217873 866 True 344 344 75.0540 1 898 1 chrUn.!!$R1 897
4 TraesCS1A01G372800 chr6D 397888454 397889283 829 True 287 287 73.9480 64 918 1 chr6D.!!$R2 854
5 TraesCS1A01G372800 chr6D 375832377 375833264 887 True 283 283 73.5830 64 964 1 chr6D.!!$R1 900
6 TraesCS1A01G372800 chr2B 762023825 762024723 898 False 274 274 73.5510 61 964 1 chr2B.!!$F1 903

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 990 0.304705 GCCCGTGCGATCAAATACAG 59.695 55.0 0.00 0.00 0.00 2.74 F
1446 1565 0.320771 AGCTGTTCGACGAAATGCCT 60.321 50.0 23.49 11.85 0.00 4.75 F
1874 1993 0.037303 TCCTTGCTGAAAGAGGGCAG 59.963 55.0 0.00 0.00 38.24 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1730 1849 0.250338 GAACACCTTCTTGGCGGACT 60.250 55.0 0.0 0.0 40.22 3.85 R
2999 3118 0.179468 TAGCATGGAGTAAACCCGCC 59.821 55.0 0.0 0.0 0.00 6.13 R
3649 3775 0.107703 GTTCCTCATGGTCGCATGGA 60.108 55.0 0.0 0.0 33.61 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.368256 ACTGAATTTTGAGCATCTGACAC 57.632 39.130 0.00 0.00 34.92 3.67
49 50 5.409520 TGAGCATCTGACACTAAACAATCAC 59.590 40.000 0.00 0.00 34.92 3.06
50 51 5.555017 AGCATCTGACACTAAACAATCACT 58.445 37.500 0.00 0.00 0.00 3.41
51 52 6.701340 AGCATCTGACACTAAACAATCACTA 58.299 36.000 0.00 0.00 0.00 2.74
54 55 7.459486 CATCTGACACTAAACAATCACTAAGC 58.541 38.462 0.00 0.00 0.00 3.09
56 57 6.868864 TCTGACACTAAACAATCACTAAGCTC 59.131 38.462 0.00 0.00 0.00 4.09
57 58 5.932303 TGACACTAAACAATCACTAAGCTCC 59.068 40.000 0.00 0.00 0.00 4.70
96 114 2.146342 TCTGCACTGCAAACTAAGCTC 58.854 47.619 4.99 0.00 38.41 4.09
100 118 2.351157 GCACTGCAAACTAAGCTCTTGG 60.351 50.000 0.00 0.00 0.00 3.61
148 166 9.474313 TCTGGCCAAATTAAATATACAAGAAGT 57.526 29.630 7.01 0.00 0.00 3.01
200 219 6.127054 TGAGCATCAGTACTACTAAATGGCTT 60.127 38.462 0.00 0.00 42.56 4.35
203 222 8.432805 AGCATCAGTACTACTAAATGGCTTAAT 58.567 33.333 0.00 0.00 0.00 1.40
251 306 9.548208 GAAATGACTAAACTAAAGAACATGAGC 57.452 33.333 0.00 0.00 0.00 4.26
252 307 8.621532 AATGACTAAACTAAAGAACATGAGCA 57.378 30.769 0.00 0.00 0.00 4.26
253 308 8.798859 ATGACTAAACTAAAGAACATGAGCAT 57.201 30.769 0.00 0.00 0.00 3.79
254 309 8.032952 TGACTAAACTAAAGAACATGAGCATG 57.967 34.615 8.82 8.82 44.15 4.06
262 317 4.785950 CATGAGCATGTGCACTGC 57.214 55.556 24.74 24.74 45.16 4.40
263 318 1.880186 CATGAGCATGTGCACTGCA 59.120 52.632 29.94 18.08 45.16 4.41
265 320 0.738975 ATGAGCATGTGCACTGCATC 59.261 50.000 29.94 24.62 41.91 3.91
269 324 1.226295 CATGTGCACTGCATCTGCG 60.226 57.895 19.41 0.00 45.83 5.18
276 331 2.125229 CTGCATCTGCGCTGGACT 60.125 61.111 14.70 0.00 45.83 3.85
277 332 1.744368 CTGCATCTGCGCTGGACTT 60.744 57.895 14.70 0.00 45.83 3.01
278 333 1.703438 CTGCATCTGCGCTGGACTTC 61.703 60.000 14.70 3.85 45.83 3.01
284 339 0.528017 CTGCGCTGGACTTCTCTACA 59.472 55.000 9.73 0.00 0.00 2.74
288 343 1.402984 CGCTGGACTTCTCTACACACC 60.403 57.143 0.00 0.00 0.00 4.16
289 344 1.618837 GCTGGACTTCTCTACACACCA 59.381 52.381 0.00 0.00 0.00 4.17
290 345 2.234908 GCTGGACTTCTCTACACACCAT 59.765 50.000 0.00 0.00 0.00 3.55
291 346 3.677424 GCTGGACTTCTCTACACACCATC 60.677 52.174 0.00 0.00 0.00 3.51
293 348 3.511540 TGGACTTCTCTACACACCATCTG 59.488 47.826 0.00 0.00 0.00 2.90
295 350 4.220821 GGACTTCTCTACACACCATCTGAA 59.779 45.833 0.00 0.00 0.00 3.02
296 351 5.140747 ACTTCTCTACACACCATCTGAAC 57.859 43.478 0.00 0.00 0.00 3.18
297 352 4.588951 ACTTCTCTACACACCATCTGAACA 59.411 41.667 0.00 0.00 0.00 3.18
298 353 4.790765 TCTCTACACACCATCTGAACAG 57.209 45.455 0.00 0.00 0.00 3.16
299 354 3.511540 TCTCTACACACCATCTGAACAGG 59.488 47.826 1.93 0.00 0.00 4.00
301 356 2.847327 ACACACCATCTGAACAGGAG 57.153 50.000 1.93 0.00 0.00 3.69
303 358 1.059098 ACACCATCTGAACAGGAGCA 58.941 50.000 1.93 0.00 0.00 4.26
304 359 1.632409 ACACCATCTGAACAGGAGCAT 59.368 47.619 1.93 0.00 0.00 3.79
305 360 2.014857 CACCATCTGAACAGGAGCATG 58.985 52.381 1.93 0.00 0.00 4.06
306 361 1.632409 ACCATCTGAACAGGAGCATGT 59.368 47.619 1.93 0.00 33.96 3.21
307 362 2.840038 ACCATCTGAACAGGAGCATGTA 59.160 45.455 1.93 0.00 31.70 2.29
354 412 6.047511 ACAGAGATTGTGCAGAATCTTACT 57.952 37.500 32.49 24.54 41.78 2.24
359 417 8.535335 AGAGATTGTGCAGAATCTTACTTTCTA 58.465 33.333 32.49 0.00 41.78 2.10
366 424 6.710295 TGCAGAATCTTACTTTCTAAGCACAA 59.290 34.615 0.00 0.00 31.20 3.33
389 447 0.329596 AAGAACCTCCTGCCCATGTC 59.670 55.000 0.00 0.00 0.00 3.06
396 454 0.971959 TCCTGCCCATGTCAAATGCC 60.972 55.000 0.00 0.00 0.00 4.40
402 460 2.675889 GCCCATGTCAAATGCCTCAAAG 60.676 50.000 0.00 0.00 0.00 2.77
422 480 1.156645 GCAATACGCCTCTCAGCTGG 61.157 60.000 15.13 4.77 32.94 4.85
428 488 2.183811 CCTCTCAGCTGGCAGACG 59.816 66.667 20.86 8.06 0.00 4.18
454 514 0.804989 CTCGCAAGGAACAATGGGTC 59.195 55.000 0.00 0.00 33.49 4.46
458 518 0.890683 CAAGGAACAATGGGTCCTGC 59.109 55.000 7.71 0.00 32.15 4.85
474 534 1.027357 CTGCCTCAATGCCCATGTAC 58.973 55.000 0.00 0.00 0.00 2.90
479 539 3.209410 CCTCAATGCCCATGTACTCTTC 58.791 50.000 0.00 0.00 0.00 2.87
481 541 1.331756 CAATGCCCATGTACTCTTCGC 59.668 52.381 0.00 0.00 0.00 4.70
508 569 3.835478 TGCTAGCAGGGATCTATAGGT 57.165 47.619 14.93 0.00 0.00 3.08
515 576 4.105377 AGCAGGGATCTATAGGTGCAAAAT 59.895 41.667 6.86 0.00 33.24 1.82
520 582 5.827797 GGGATCTATAGGTGCAAAATGAACA 59.172 40.000 6.86 0.00 0.00 3.18
522 584 7.147915 GGGATCTATAGGTGCAAAATGAACAAA 60.148 37.037 6.86 0.00 0.00 2.83
538 600 7.748691 ATGAACAAAAATCCCCAAATCAAAG 57.251 32.000 0.00 0.00 0.00 2.77
539 601 6.893583 TGAACAAAAATCCCCAAATCAAAGA 58.106 32.000 0.00 0.00 0.00 2.52
540 602 7.516452 TGAACAAAAATCCCCAAATCAAAGAT 58.484 30.769 0.00 0.00 0.00 2.40
541 603 7.661027 TGAACAAAAATCCCCAAATCAAAGATC 59.339 33.333 0.00 0.00 0.00 2.75
542 604 6.165577 ACAAAAATCCCCAAATCAAAGATCG 58.834 36.000 0.00 0.00 0.00 3.69
543 605 6.014669 ACAAAAATCCCCAAATCAAAGATCGA 60.015 34.615 0.00 0.00 0.00 3.59
544 606 6.603940 AAAATCCCCAAATCAAAGATCGAA 57.396 33.333 0.00 0.00 0.00 3.71
545 607 6.796785 AAATCCCCAAATCAAAGATCGAAT 57.203 33.333 0.00 0.00 0.00 3.34
546 608 6.396829 AATCCCCAAATCAAAGATCGAATC 57.603 37.500 0.00 0.00 0.00 2.52
547 609 4.207165 TCCCCAAATCAAAGATCGAATCC 58.793 43.478 0.00 0.00 0.00 3.01
548 610 3.319122 CCCCAAATCAAAGATCGAATCCC 59.681 47.826 0.00 0.00 0.00 3.85
549 611 3.319122 CCCAAATCAAAGATCGAATCCCC 59.681 47.826 0.00 0.00 0.00 4.81
550 612 3.319122 CCAAATCAAAGATCGAATCCCCC 59.681 47.826 0.00 0.00 0.00 5.40
567 629 1.643811 CCCCCAATCCCCAAAGTAGAA 59.356 52.381 0.00 0.00 0.00 2.10
571 633 4.156477 CCCAATCCCCAAAGTAGAAAACA 58.844 43.478 0.00 0.00 0.00 2.83
586 648 7.855375 AGTAGAAAACATAACCCTAACCCTAC 58.145 38.462 0.00 0.00 0.00 3.18
587 649 6.707273 AGAAAACATAACCCTAACCCTACA 57.293 37.500 0.00 0.00 0.00 2.74
590 652 5.641789 AACATAACCCTAACCCTACATCC 57.358 43.478 0.00 0.00 0.00 3.51
593 655 1.889174 ACCCTAACCCTACATCCACC 58.111 55.000 0.00 0.00 0.00 4.61
601 663 1.275666 CCTACATCCACCACTCACCA 58.724 55.000 0.00 0.00 0.00 4.17
608 670 1.056660 CCACCACTCACCAGGTACTT 58.943 55.000 0.00 0.00 34.60 2.24
617 682 0.690762 ACCAGGTACTTCATGCCGTT 59.309 50.000 0.00 0.00 38.34 4.44
630 695 0.817634 TGCCGTTGTTGGAGGAGTTG 60.818 55.000 0.00 0.00 0.00 3.16
636 701 3.432252 CGTTGTTGGAGGAGTTGATGTAC 59.568 47.826 0.00 0.00 0.00 2.90
637 702 4.385825 GTTGTTGGAGGAGTTGATGTACA 58.614 43.478 0.00 0.00 0.00 2.90
638 703 4.698201 TGTTGGAGGAGTTGATGTACAA 57.302 40.909 0.00 0.00 36.02 2.41
653 718 5.357314 TGATGTACAACAGGCTAGAGTAGTC 59.643 44.000 0.00 0.00 0.00 2.59
654 719 3.688185 TGTACAACAGGCTAGAGTAGTCG 59.312 47.826 0.00 0.00 35.04 4.18
655 720 2.792878 ACAACAGGCTAGAGTAGTCGT 58.207 47.619 0.00 0.00 35.04 4.34
656 721 3.155501 ACAACAGGCTAGAGTAGTCGTT 58.844 45.455 0.00 0.00 35.04 3.85
660 725 2.943690 CAGGCTAGAGTAGTCGTTGCTA 59.056 50.000 0.00 0.00 35.04 3.49
672 737 0.803117 CGTTGCTACTCTCGTCCTCA 59.197 55.000 0.00 0.00 0.00 3.86
677 742 2.943690 TGCTACTCTCGTCCTCATACAC 59.056 50.000 0.00 0.00 0.00 2.90
685 750 0.532862 GTCCTCATACACCATGGCGG 60.533 60.000 13.04 7.11 42.50 6.13
703 779 4.028490 GGTGGCGGTGATGGTGGA 62.028 66.667 0.00 0.00 0.00 4.02
704 780 2.746277 GTGGCGGTGATGGTGGAC 60.746 66.667 0.00 0.00 0.00 4.02
705 781 2.927856 TGGCGGTGATGGTGGACT 60.928 61.111 0.00 0.00 0.00 3.85
706 782 2.436646 GGCGGTGATGGTGGACTG 60.437 66.667 0.00 0.00 0.00 3.51
707 783 2.347490 GCGGTGATGGTGGACTGT 59.653 61.111 0.00 0.00 0.00 3.55
745 832 1.827789 CAGAGAGAGGAGGGCGAGG 60.828 68.421 0.00 0.00 0.00 4.63
746 833 3.223589 GAGAGAGGAGGGCGAGGC 61.224 72.222 0.00 0.00 0.00 4.70
747 834 3.731766 GAGAGAGGAGGGCGAGGCT 62.732 68.421 0.00 0.00 0.00 4.58
752 839 3.483869 GGAGGGCGAGGCTGGATT 61.484 66.667 0.00 0.00 0.00 3.01
753 840 2.110006 GAGGGCGAGGCTGGATTC 59.890 66.667 0.00 0.00 0.00 2.52
755 842 2.257409 GAGGGCGAGGCTGGATTCAA 62.257 60.000 0.00 0.00 0.00 2.69
756 843 1.821332 GGGCGAGGCTGGATTCAAG 60.821 63.158 0.00 0.00 0.00 3.02
757 844 1.821332 GGCGAGGCTGGATTCAAGG 60.821 63.158 0.00 0.00 0.00 3.61
758 845 2.476320 GCGAGGCTGGATTCAAGGC 61.476 63.158 6.51 6.51 0.00 4.35
775 865 4.135153 CCGAGAGTGAGGTGGGCG 62.135 72.222 0.00 0.00 0.00 6.13
777 867 4.459089 GAGAGTGAGGTGGGCGGC 62.459 72.222 0.00 0.00 0.00 6.53
794 884 2.359975 CTTGGTTCGACCCAGCCC 60.360 66.667 0.65 0.00 37.50 5.19
804 895 1.000359 ACCCAGCCCAGCCATTTAC 60.000 57.895 0.00 0.00 0.00 2.01
807 898 0.323725 CCAGCCCAGCCATTTACACT 60.324 55.000 0.00 0.00 0.00 3.55
808 899 0.813184 CAGCCCAGCCATTTACACTG 59.187 55.000 0.00 0.00 0.00 3.66
813 904 1.338674 CCAGCCATTTACACTGACCGA 60.339 52.381 0.00 0.00 33.10 4.69
817 908 0.999406 CATTTACACTGACCGAGCCG 59.001 55.000 0.00 0.00 0.00 5.52
836 927 2.113433 GCCTCGTCCTAGTCAGCGA 61.113 63.158 0.00 0.00 0.00 4.93
884 976 3.402681 CCTGACAGATGGGCCCGT 61.403 66.667 19.20 19.20 0.00 5.28
892 984 4.108299 ATGGGCCCGTGCGATCAA 62.108 61.111 18.28 0.00 38.85 2.57
898 990 0.304705 GCCCGTGCGATCAAATACAG 59.695 55.000 0.00 0.00 0.00 2.74
908 1000 5.005299 TGCGATCAAATACAGTGTCAATACG 59.995 40.000 0.00 0.12 0.00 3.06
909 1001 5.231357 GCGATCAAATACAGTGTCAATACGA 59.769 40.000 0.00 0.00 0.00 3.43
910 1002 6.560433 GCGATCAAATACAGTGTCAATACGAG 60.560 42.308 0.00 0.00 0.00 4.18
911 1003 6.691388 CGATCAAATACAGTGTCAATACGAGA 59.309 38.462 0.00 0.00 0.00 4.04
918 1010 9.909644 AATACAGTGTCAATACGAGATTATACC 57.090 33.333 0.00 0.00 0.00 2.73
919 1011 7.342769 ACAGTGTCAATACGAGATTATACCA 57.657 36.000 0.00 0.00 0.00 3.25
920 1012 7.952671 ACAGTGTCAATACGAGATTATACCAT 58.047 34.615 0.00 0.00 0.00 3.55
921 1013 7.867909 ACAGTGTCAATACGAGATTATACCATG 59.132 37.037 0.00 0.00 0.00 3.66
922 1014 6.868864 AGTGTCAATACGAGATTATACCATGC 59.131 38.462 0.00 0.00 0.00 4.06
923 1015 6.868864 GTGTCAATACGAGATTATACCATGCT 59.131 38.462 0.00 0.00 0.00 3.79
924 1016 6.868339 TGTCAATACGAGATTATACCATGCTG 59.132 38.462 0.00 0.00 0.00 4.41
925 1017 7.090808 GTCAATACGAGATTATACCATGCTGA 58.909 38.462 0.00 0.00 0.00 4.26
926 1018 7.274468 GTCAATACGAGATTATACCATGCTGAG 59.726 40.741 0.00 0.00 0.00 3.35
927 1019 7.176690 TCAATACGAGATTATACCATGCTGAGA 59.823 37.037 0.00 0.00 0.00 3.27
928 1020 5.127693 ACGAGATTATACCATGCTGAGAC 57.872 43.478 0.00 0.00 0.00 3.36
929 1021 4.021894 ACGAGATTATACCATGCTGAGACC 60.022 45.833 0.00 0.00 0.00 3.85
930 1022 4.021981 CGAGATTATACCATGCTGAGACCA 60.022 45.833 0.00 0.00 0.00 4.02
931 1023 5.337089 CGAGATTATACCATGCTGAGACCAT 60.337 44.000 0.00 0.00 0.00 3.55
932 1024 6.445451 AGATTATACCATGCTGAGACCATT 57.555 37.500 0.00 0.00 0.00 3.16
933 1025 6.845908 AGATTATACCATGCTGAGACCATTT 58.154 36.000 0.00 0.00 0.00 2.32
934 1026 7.293073 AGATTATACCATGCTGAGACCATTTT 58.707 34.615 0.00 0.00 0.00 1.82
935 1027 6.698008 TTATACCATGCTGAGACCATTTTG 57.302 37.500 0.00 0.00 0.00 2.44
936 1028 1.547372 ACCATGCTGAGACCATTTTGC 59.453 47.619 0.00 0.00 0.00 3.68
937 1029 1.546923 CCATGCTGAGACCATTTTGCA 59.453 47.619 0.00 0.00 34.88 4.08
938 1030 2.028839 CCATGCTGAGACCATTTTGCAA 60.029 45.455 0.00 0.00 34.07 4.08
939 1031 2.798976 TGCTGAGACCATTTTGCAAC 57.201 45.000 0.00 0.00 0.00 4.17
940 1032 2.030371 TGCTGAGACCATTTTGCAACA 58.970 42.857 0.00 0.00 0.00 3.33
941 1033 2.429971 TGCTGAGACCATTTTGCAACAA 59.570 40.909 0.00 0.00 0.00 2.83
942 1034 3.069872 TGCTGAGACCATTTTGCAACAAT 59.930 39.130 0.00 0.00 0.00 2.71
943 1035 4.060205 GCTGAGACCATTTTGCAACAATT 58.940 39.130 0.00 0.00 0.00 2.32
944 1036 5.221402 TGCTGAGACCATTTTGCAACAATTA 60.221 36.000 0.00 0.00 0.00 1.40
945 1037 5.346822 GCTGAGACCATTTTGCAACAATTAG 59.653 40.000 0.00 0.06 0.00 1.73
946 1038 5.782047 TGAGACCATTTTGCAACAATTAGG 58.218 37.500 0.00 4.29 0.00 2.69
947 1039 4.568956 AGACCATTTTGCAACAATTAGGC 58.431 39.130 0.00 0.00 0.00 3.93
948 1040 3.324993 ACCATTTTGCAACAATTAGGCG 58.675 40.909 0.00 0.00 0.00 5.52
949 1041 2.094099 CCATTTTGCAACAATTAGGCGC 59.906 45.455 0.00 0.00 0.00 6.53
950 1042 2.515926 TTTTGCAACAATTAGGCGCA 57.484 40.000 10.83 0.00 0.00 6.09
951 1043 2.739885 TTTGCAACAATTAGGCGCAT 57.260 40.000 10.83 3.98 31.67 4.73
952 1044 3.857549 TTTGCAACAATTAGGCGCATA 57.142 38.095 10.83 2.52 31.67 3.14
953 1045 3.419264 TTGCAACAATTAGGCGCATAG 57.581 42.857 10.83 0.00 31.67 2.23
954 1046 2.637947 TGCAACAATTAGGCGCATAGA 58.362 42.857 10.83 0.00 0.00 1.98
955 1047 3.213506 TGCAACAATTAGGCGCATAGAT 58.786 40.909 10.83 0.01 0.00 1.98
956 1048 3.003585 TGCAACAATTAGGCGCATAGATG 59.996 43.478 10.83 12.01 0.00 2.90
957 1049 3.003689 GCAACAATTAGGCGCATAGATGT 59.996 43.478 10.83 12.70 0.00 3.06
958 1050 4.498009 GCAACAATTAGGCGCATAGATGTT 60.498 41.667 21.26 21.26 0.00 2.71
959 1051 5.277779 GCAACAATTAGGCGCATAGATGTTA 60.278 40.000 24.31 3.28 0.00 2.41
960 1052 5.924475 ACAATTAGGCGCATAGATGTTAC 57.076 39.130 10.83 0.00 0.00 2.50
961 1053 5.611374 ACAATTAGGCGCATAGATGTTACT 58.389 37.500 10.83 0.00 0.00 2.24
962 1054 5.466728 ACAATTAGGCGCATAGATGTTACTG 59.533 40.000 10.83 0.00 0.00 2.74
963 1055 4.929819 TTAGGCGCATAGATGTTACTGA 57.070 40.909 10.83 0.00 0.00 3.41
964 1056 3.099267 AGGCGCATAGATGTTACTGAC 57.901 47.619 10.83 0.00 0.00 3.51
965 1057 2.430694 AGGCGCATAGATGTTACTGACA 59.569 45.455 10.83 0.00 43.71 3.58
991 1083 4.467198 AAAAGGTGACTAGTGATACCCG 57.533 45.455 0.00 0.00 42.68 5.28
992 1084 2.822707 AGGTGACTAGTGATACCCGT 57.177 50.000 0.00 0.00 40.61 5.28
993 1085 3.097342 AGGTGACTAGTGATACCCGTT 57.903 47.619 0.00 0.00 40.61 4.44
994 1086 4.240881 AGGTGACTAGTGATACCCGTTA 57.759 45.455 0.00 0.00 40.61 3.18
995 1087 3.950395 AGGTGACTAGTGATACCCGTTAC 59.050 47.826 0.00 0.00 40.61 2.50
996 1088 3.696051 GGTGACTAGTGATACCCGTTACA 59.304 47.826 0.00 0.00 0.00 2.41
997 1089 4.158394 GGTGACTAGTGATACCCGTTACAA 59.842 45.833 0.00 0.00 0.00 2.41
998 1090 5.098211 GTGACTAGTGATACCCGTTACAAC 58.902 45.833 0.00 0.00 0.00 3.32
1014 1106 6.535274 GTTACAACGATGTGGTACTTTCTT 57.465 37.500 8.79 0.00 40.84 2.52
1015 1107 6.951643 GTTACAACGATGTGGTACTTTCTTT 58.048 36.000 8.79 0.00 40.84 2.52
1016 1108 5.668558 ACAACGATGTGGTACTTTCTTTC 57.331 39.130 0.00 0.00 38.69 2.62
1017 1109 4.514066 ACAACGATGTGGTACTTTCTTTCC 59.486 41.667 0.00 0.00 38.69 3.13
1018 1110 3.323243 ACGATGTGGTACTTTCTTTCCG 58.677 45.455 0.00 0.00 0.00 4.30
1019 1111 3.243975 ACGATGTGGTACTTTCTTTCCGT 60.244 43.478 0.00 0.00 0.00 4.69
1020 1112 3.122948 CGATGTGGTACTTTCTTTCCGTG 59.877 47.826 0.00 0.00 0.00 4.94
1021 1113 2.215196 TGTGGTACTTTCTTTCCGTGC 58.785 47.619 0.00 0.00 0.00 5.34
1022 1114 2.215196 GTGGTACTTTCTTTCCGTGCA 58.785 47.619 0.00 0.00 0.00 4.57
1023 1115 2.614983 GTGGTACTTTCTTTCCGTGCAA 59.385 45.455 0.00 0.00 0.00 4.08
1024 1116 3.252458 GTGGTACTTTCTTTCCGTGCAAT 59.748 43.478 0.00 0.00 0.00 3.56
1025 1117 3.886505 TGGTACTTTCTTTCCGTGCAATT 59.113 39.130 0.00 0.00 0.00 2.32
1026 1118 5.049267 GTGGTACTTTCTTTCCGTGCAATTA 60.049 40.000 0.00 0.00 0.00 1.40
1027 1119 5.531659 TGGTACTTTCTTTCCGTGCAATTAA 59.468 36.000 0.00 0.00 0.00 1.40
1028 1120 5.854866 GGTACTTTCTTTCCGTGCAATTAAC 59.145 40.000 0.00 0.00 0.00 2.01
1029 1121 5.767816 ACTTTCTTTCCGTGCAATTAACT 57.232 34.783 0.00 0.00 0.00 2.24
1030 1122 5.758924 ACTTTCTTTCCGTGCAATTAACTC 58.241 37.500 0.00 0.00 0.00 3.01
1063 1155 1.934220 GAGATCCGACGGTGCACAGA 61.934 60.000 24.13 9.38 0.00 3.41
1066 1158 0.670546 ATCCGACGGTGCACAGAAAG 60.671 55.000 24.13 12.93 0.00 2.62
1068 1160 2.946762 GACGGTGCACAGAAAGGC 59.053 61.111 24.13 4.82 0.00 4.35
1103 1197 1.924320 GCGTCCGTCTCTGCTACACT 61.924 60.000 0.00 0.00 0.00 3.55
1104 1198 0.522180 CGTCCGTCTCTGCTACACTT 59.478 55.000 0.00 0.00 0.00 3.16
1105 1199 1.729472 CGTCCGTCTCTGCTACACTTG 60.729 57.143 0.00 0.00 0.00 3.16
1401 1520 2.571757 CTCGCCTCCTACGCAACA 59.428 61.111 0.00 0.00 0.00 3.33
1446 1565 0.320771 AGCTGTTCGACGAAATGCCT 60.321 50.000 23.49 11.85 0.00 4.75
1449 1568 2.069273 CTGTTCGACGAAATGCCTCTT 58.931 47.619 12.67 0.00 0.00 2.85
1450 1569 3.250744 CTGTTCGACGAAATGCCTCTTA 58.749 45.455 12.67 0.00 0.00 2.10
1649 1768 3.790437 CTCCCTGCACGCCCTCAT 61.790 66.667 0.00 0.00 0.00 2.90
1722 1841 2.108514 CATGTACGCCAGGTGCCTG 61.109 63.158 11.13 11.13 43.26 4.85
1749 1868 0.250338 AGTCCGCCAAGAAGGTGTTC 60.250 55.000 0.00 0.00 46.87 3.18
1754 1873 1.523758 GCCAAGAAGGTGTTCGACAT 58.476 50.000 0.00 0.00 40.61 3.06
1757 1876 2.480419 CCAAGAAGGTGTTCGACATGAC 59.520 50.000 0.00 0.00 37.79 3.06
1762 1881 1.290955 GTGTTCGACATGACCCCGA 59.709 57.895 0.00 0.00 0.00 5.14
1842 1961 1.136984 CGACGCGCTAGACCTTCTT 59.863 57.895 5.73 0.00 0.00 2.52
1873 1992 0.250901 GTCCTTGCTGAAAGAGGGCA 60.251 55.000 0.00 0.00 38.24 5.36
1874 1993 0.037303 TCCTTGCTGAAAGAGGGCAG 59.963 55.000 0.00 0.00 38.24 4.85
1900 2019 1.136984 GGCTTCGATGAGACGACGT 59.863 57.895 0.00 0.00 41.97 4.34
1932 2051 0.604780 TTCAGCTGTGCAAGAGGCTC 60.605 55.000 14.67 6.34 45.15 4.70
2242 2361 4.819761 GCGTCCTCGAGGCATGCA 62.820 66.667 28.44 12.89 42.14 3.96
2349 2468 1.210478 GCTCTGGTGGACATGTATGGT 59.790 52.381 0.00 0.00 0.00 3.55
2397 2516 1.226379 GGTGTTCAATGCGATGCCG 60.226 57.895 0.00 0.00 39.16 5.69
2430 2549 2.356535 GCTCACCTGGAACTCCATGATT 60.357 50.000 0.00 0.00 46.46 2.57
2436 2555 0.749454 GGAACTCCATGATTGGCGCT 60.749 55.000 7.64 0.00 43.29 5.92
2497 2616 0.467384 CGACAGGATGGAGCAGGAAT 59.533 55.000 0.00 0.00 43.62 3.01
2565 2684 3.755628 GCGCACGGAGGTCTGGTA 61.756 66.667 0.30 0.00 0.00 3.25
2777 2896 1.585002 GCTACAGCAGCGACTCGAG 60.585 63.158 11.84 11.84 41.37 4.04
2937 3056 1.218047 GACTGGCGGACACAGCATA 59.782 57.895 0.00 0.00 39.55 3.14
2950 3069 2.677228 GCATAGTGCAGGTGGGGT 59.323 61.111 0.00 0.00 44.26 4.95
2973 3092 2.484742 ATGCTCACAGCTTCATGTCA 57.515 45.000 0.00 0.00 42.97 3.58
2999 3118 1.222936 GATGCCACCCTGACAGAGG 59.777 63.158 3.32 6.24 42.38 3.69
3094 3217 8.713971 ACCATCATCTTACCTTATTATCACACA 58.286 33.333 0.00 0.00 0.00 3.72
3128 3253 4.985538 AAGGTACATACGAAGTCCTCAG 57.014 45.455 0.00 0.00 43.93 3.35
3149 3274 7.094890 CCTCAGCATCATCTATGTTTATCAACC 60.095 40.741 0.00 0.00 37.93 3.77
3150 3275 7.512130 TCAGCATCATCTATGTTTATCAACCT 58.488 34.615 0.00 0.00 37.93 3.50
3215 3340 2.480037 TCTGTAGTGCATTTTGAGTGCG 59.520 45.455 0.00 0.00 45.37 5.34
3267 3393 6.212589 TCAGTATGGTTCTTTCATGACCTGTA 59.787 38.462 0.00 0.00 36.16 2.74
3274 3400 6.825721 GGTTCTTTCATGACCTGTAGATGATT 59.174 38.462 0.00 0.00 0.00 2.57
3462 3588 2.213499 GAGATACTGCGGAATGGGTTG 58.787 52.381 0.00 0.00 0.00 3.77
3477 3603 0.744771 GGTTGGAAGGCGGAGTGATC 60.745 60.000 0.00 0.00 0.00 2.92
3490 3616 0.616111 AGTGATCTCCGTCTTGCCCT 60.616 55.000 0.00 0.00 0.00 5.19
3491 3617 0.179097 GTGATCTCCGTCTTGCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
3492 3618 1.066587 GATCTCCGTCTTGCCCTCG 59.933 63.158 0.00 0.00 0.00 4.63
3493 3619 1.379977 ATCTCCGTCTTGCCCTCGA 60.380 57.895 0.00 0.00 0.00 4.04
3494 3620 1.388065 ATCTCCGTCTTGCCCTCGAG 61.388 60.000 5.13 5.13 0.00 4.04
3495 3621 3.708220 CTCCGTCTTGCCCTCGAGC 62.708 68.421 6.99 0.00 0.00 5.03
3496 3622 4.069232 CCGTCTTGCCCTCGAGCA 62.069 66.667 6.99 0.00 42.17 4.26
3497 3623 2.185350 CGTCTTGCCCTCGAGCAT 59.815 61.111 6.99 0.00 43.64 3.79
3498 3624 1.880340 CGTCTTGCCCTCGAGCATC 60.880 63.158 6.99 0.00 43.64 3.91
3499 3625 1.519719 GTCTTGCCCTCGAGCATCT 59.480 57.895 6.99 0.00 43.64 2.90
3500 3626 0.107945 GTCTTGCCCTCGAGCATCTT 60.108 55.000 6.99 0.00 43.64 2.40
3501 3627 0.176680 TCTTGCCCTCGAGCATCTTC 59.823 55.000 6.99 0.00 43.64 2.87
3502 3628 0.107993 CTTGCCCTCGAGCATCTTCA 60.108 55.000 6.99 0.00 43.64 3.02
3503 3629 0.107993 TTGCCCTCGAGCATCTTCAG 60.108 55.000 6.99 0.00 43.64 3.02
3504 3630 1.260538 TGCCCTCGAGCATCTTCAGT 61.261 55.000 6.99 0.00 38.00 3.41
3509 3635 2.928757 CCTCGAGCATCTTCAGTTCTTG 59.071 50.000 6.99 0.00 0.00 3.02
3516 3642 3.743521 CATCTTCAGTTCTTGACCACCA 58.256 45.455 0.00 0.00 34.94 4.17
3534 3660 3.257561 CGCTCATTGACGGCCTCG 61.258 66.667 0.00 0.00 43.02 4.63
3547 3673 4.435436 CCTCGGCTGCACGCACTA 62.435 66.667 0.50 0.00 41.67 2.74
3593 3719 4.087892 AGCCCTCTGCAACGCGAT 62.088 61.111 15.93 0.00 44.83 4.58
3635 3761 1.219124 GAGTTCCATCAGCTCGCCA 59.781 57.895 0.00 0.00 0.00 5.69
3699 3825 1.227350 CTCTTCGGCATGGCATCGA 60.227 57.895 20.37 7.13 0.00 3.59
3701 3827 1.815003 CTTCGGCATGGCATCGACA 60.815 57.895 20.37 3.09 32.39 4.35
3786 3924 0.613260 CTCGGTGATCCAAACCTCCA 59.387 55.000 0.00 0.00 35.39 3.86
3788 3926 0.324943 CGGTGATCCAAACCTCCAGT 59.675 55.000 0.00 0.00 35.39 4.00
3808 3946 2.489275 CGGTGTGCCCAAAAGTGCT 61.489 57.895 0.00 0.00 0.00 4.40
3813 3951 2.417097 GCCCAAAAGTGCTGCGTT 59.583 55.556 0.00 0.00 0.00 4.84
3828 3966 2.504244 GTTCGCGGGACAGAGACG 60.504 66.667 6.13 0.00 0.00 4.18
3834 3972 2.430921 GGGACAGAGACGTGCGTG 60.431 66.667 0.67 0.00 0.00 5.34
3882 4020 3.507377 AAAGTCGGCCACCTTGGGG 62.507 63.158 2.24 0.00 38.19 4.96
3999 4142 8.200792 AGGATGGATGAGTAATAGAAATATCGC 58.799 37.037 0.00 0.00 0.00 4.58
4012 4155 5.833082 AGAAATATCGCGAGTGTCATTACT 58.167 37.500 16.66 2.22 0.00 2.24
4023 4166 3.081061 GTGTCATTACTGGTGGCAATCA 58.919 45.455 0.00 0.00 32.28 2.57
4102 4245 7.228706 GGTTTACTGTATGCTACCTATTGCATT 59.771 37.037 5.78 0.00 46.29 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.882610 TGTTTAGTGTCAGATGCTCAAAAT 57.117 33.333 0.00 0.00 0.00 1.82
38 39 4.843728 TGGGGAGCTTAGTGATTGTTTAG 58.156 43.478 0.00 0.00 0.00 1.85
49 50 6.773976 TCATTGTTTAATTGGGGAGCTTAG 57.226 37.500 0.00 0.00 0.00 2.18
50 51 6.894654 TGATCATTGTTTAATTGGGGAGCTTA 59.105 34.615 0.00 0.00 0.00 3.09
51 52 5.721000 TGATCATTGTTTAATTGGGGAGCTT 59.279 36.000 0.00 0.00 0.00 3.74
54 55 7.431249 CAGATGATCATTGTTTAATTGGGGAG 58.569 38.462 10.14 0.00 0.00 4.30
56 57 5.987347 GCAGATGATCATTGTTTAATTGGGG 59.013 40.000 10.14 0.00 0.00 4.96
57 58 6.477688 GTGCAGATGATCATTGTTTAATTGGG 59.522 38.462 10.14 0.00 0.00 4.12
158 176 3.117776 TGCTCATCATTGGAGTAGGCAAT 60.118 43.478 0.00 0.00 34.83 3.56
159 177 2.239402 TGCTCATCATTGGAGTAGGCAA 59.761 45.455 0.00 0.00 34.83 4.52
161 179 2.627515 TGCTCATCATTGGAGTAGGC 57.372 50.000 0.00 0.00 34.83 3.93
162 180 4.202336 ACTGATGCTCATCATTGGAGTAGG 60.202 45.833 12.40 1.74 45.74 3.18
166 185 4.958509 AGTACTGATGCTCATCATTGGAG 58.041 43.478 12.40 4.24 45.74 3.86
225 244 9.548208 GCTCATGTTCTTTAGTTTAGTCATTTC 57.452 33.333 0.00 0.00 0.00 2.17
227 282 8.621532 TGCTCATGTTCTTTAGTTTAGTCATT 57.378 30.769 0.00 0.00 0.00 2.57
250 305 1.516386 GCAGATGCAGTGCACATGC 60.516 57.895 29.81 29.81 43.04 4.06
251 306 1.226295 CGCAGATGCAGTGCACATG 60.226 57.895 22.44 21.85 43.04 3.21
252 307 3.047718 GCGCAGATGCAGTGCACAT 62.048 57.895 22.44 9.22 43.04 3.21
253 308 3.729698 GCGCAGATGCAGTGCACA 61.730 61.111 22.44 0.00 43.04 4.57
254 309 3.429141 AGCGCAGATGCAGTGCAC 61.429 61.111 22.44 9.40 43.04 4.57
255 310 3.428282 CAGCGCAGATGCAGTGCA 61.428 61.111 22.22 22.22 44.55 4.57
256 311 4.175489 CCAGCGCAGATGCAGTGC 62.175 66.667 11.47 8.58 45.88 4.40
257 312 2.435410 TCCAGCGCAGATGCAGTG 60.435 61.111 11.47 0.00 45.88 3.66
258 313 2.435586 GTCCAGCGCAGATGCAGT 60.436 61.111 11.47 0.00 45.88 4.40
259 314 1.703438 GAAGTCCAGCGCAGATGCAG 61.703 60.000 11.47 0.00 45.88 4.41
260 315 1.742880 GAAGTCCAGCGCAGATGCA 60.743 57.895 11.47 0.00 45.88 3.96
261 316 1.427592 GAGAAGTCCAGCGCAGATGC 61.428 60.000 11.47 0.00 45.88 3.91
263 318 1.407258 GTAGAGAAGTCCAGCGCAGAT 59.593 52.381 11.47 0.00 0.00 2.90
265 320 0.528017 TGTAGAGAAGTCCAGCGCAG 59.472 55.000 11.47 0.00 0.00 5.18
269 324 1.618837 TGGTGTGTAGAGAAGTCCAGC 59.381 52.381 0.00 0.00 0.00 4.85
276 331 4.021104 CCTGTTCAGATGGTGTGTAGAGAA 60.021 45.833 1.00 0.00 0.00 2.87
277 332 3.511540 CCTGTTCAGATGGTGTGTAGAGA 59.488 47.826 1.00 0.00 0.00 3.10
278 333 3.511540 TCCTGTTCAGATGGTGTGTAGAG 59.488 47.826 1.00 0.00 0.00 2.43
284 339 1.059098 TGCTCCTGTTCAGATGGTGT 58.941 50.000 1.00 0.00 0.00 4.16
288 343 5.851720 AGTATACATGCTCCTGTTCAGATG 58.148 41.667 5.50 0.39 0.00 2.90
289 344 7.452813 TGATAGTATACATGCTCCTGTTCAGAT 59.547 37.037 5.50 0.00 0.00 2.90
290 345 6.777580 TGATAGTATACATGCTCCTGTTCAGA 59.222 38.462 5.50 0.00 0.00 3.27
291 346 6.986250 TGATAGTATACATGCTCCTGTTCAG 58.014 40.000 5.50 0.00 0.00 3.02
293 348 8.839310 AATTGATAGTATACATGCTCCTGTTC 57.161 34.615 5.50 0.00 0.00 3.18
334 389 7.608308 AGAAAGTAAGATTCTGCACAATCTC 57.392 36.000 16.35 6.51 41.45 2.75
354 412 6.485648 GGAGGTTCTTAGTTTGTGCTTAGAAA 59.514 38.462 0.00 0.00 36.37 2.52
359 417 4.137543 CAGGAGGTTCTTAGTTTGTGCTT 58.862 43.478 0.00 0.00 0.00 3.91
366 424 1.742308 TGGGCAGGAGGTTCTTAGTT 58.258 50.000 0.00 0.00 0.00 2.24
405 463 1.144936 GCCAGCTGAGAGGCGTATT 59.855 57.895 17.39 0.00 41.70 1.89
422 480 3.558411 GCGAGCACCATCGTCTGC 61.558 66.667 0.00 0.00 44.53 4.26
426 484 2.434884 CCTTGCGAGCACCATCGT 60.435 61.111 0.00 0.00 44.53 3.73
428 488 0.955428 TGTTCCTTGCGAGCACCATC 60.955 55.000 0.00 0.00 0.00 3.51
454 514 0.106569 TACATGGGCATTGAGGCAGG 60.107 55.000 0.00 0.00 46.44 4.85
458 518 3.209410 GAAGAGTACATGGGCATTGAGG 58.791 50.000 0.00 0.00 0.00 3.86
474 534 1.596727 GCTAGCATTGAAGGCGAAGAG 59.403 52.381 10.63 2.47 36.08 2.85
479 539 1.442526 CCCTGCTAGCATTGAAGGCG 61.443 60.000 19.72 3.43 36.08 5.52
481 541 2.106166 AGATCCCTGCTAGCATTGAAGG 59.894 50.000 19.72 15.24 0.00 3.46
508 569 4.785301 TGGGGATTTTTGTTCATTTTGCA 58.215 34.783 0.00 0.00 0.00 4.08
515 576 6.893583 TCTTTGATTTGGGGATTTTTGTTCA 58.106 32.000 0.00 0.00 0.00 3.18
520 582 6.603940 TCGATCTTTGATTTGGGGATTTTT 57.396 33.333 0.00 0.00 0.00 1.94
522 584 6.183360 GGATTCGATCTTTGATTTGGGGATTT 60.183 38.462 0.00 0.00 0.00 2.17
547 609 1.304891 TCTACTTTGGGGATTGGGGG 58.695 55.000 0.00 0.00 0.00 5.40
548 610 3.466395 TTTCTACTTTGGGGATTGGGG 57.534 47.619 0.00 0.00 0.00 4.96
549 611 4.156477 TGTTTTCTACTTTGGGGATTGGG 58.844 43.478 0.00 0.00 0.00 4.12
550 612 7.320399 GTTATGTTTTCTACTTTGGGGATTGG 58.680 38.462 0.00 0.00 0.00 3.16
551 613 7.320399 GGTTATGTTTTCTACTTTGGGGATTG 58.680 38.462 0.00 0.00 0.00 2.67
563 625 7.811482 TGTAGGGTTAGGGTTATGTTTTCTA 57.189 36.000 0.00 0.00 0.00 2.10
567 629 5.493250 TGGATGTAGGGTTAGGGTTATGTTT 59.507 40.000 0.00 0.00 0.00 2.83
571 633 3.978672 GGTGGATGTAGGGTTAGGGTTAT 59.021 47.826 0.00 0.00 0.00 1.89
586 648 1.066143 GTACCTGGTGAGTGGTGGATG 60.066 57.143 10.23 0.00 37.74 3.51
587 649 1.203313 AGTACCTGGTGAGTGGTGGAT 60.203 52.381 10.23 0.00 37.74 3.41
590 652 1.691976 TGAAGTACCTGGTGAGTGGTG 59.308 52.381 10.23 0.00 37.74 4.17
593 655 2.350522 GCATGAAGTACCTGGTGAGTG 58.649 52.381 10.23 1.28 0.00 3.51
601 663 2.151202 CAACAACGGCATGAAGTACCT 58.849 47.619 0.00 0.00 0.00 3.08
608 670 0.321564 CTCCTCCAACAACGGCATGA 60.322 55.000 0.00 0.00 0.00 3.07
617 682 4.698201 TTGTACATCAACTCCTCCAACA 57.302 40.909 0.00 0.00 0.00 3.33
630 695 5.504337 CGACTACTCTAGCCTGTTGTACATC 60.504 48.000 0.00 0.00 0.00 3.06
636 701 3.502920 CAACGACTACTCTAGCCTGTTG 58.497 50.000 0.00 0.00 32.83 3.33
637 702 2.094649 GCAACGACTACTCTAGCCTGTT 60.095 50.000 0.00 0.00 0.00 3.16
638 703 1.473278 GCAACGACTACTCTAGCCTGT 59.527 52.381 0.00 0.00 0.00 4.00
660 725 2.690497 CATGGTGTATGAGGACGAGAGT 59.310 50.000 0.00 0.00 43.47 3.24
672 737 2.595095 CACCCCGCCATGGTGTAT 59.405 61.111 23.44 5.98 46.62 2.29
718 794 3.420893 CCTCCTCTCTCTGATTCGCTAT 58.579 50.000 0.00 0.00 0.00 2.97
720 796 1.691196 CCTCCTCTCTCTGATTCGCT 58.309 55.000 0.00 0.00 0.00 4.93
745 832 0.813210 CTCTCGGCCTTGAATCCAGC 60.813 60.000 0.00 0.00 0.00 4.85
746 833 0.539051 ACTCTCGGCCTTGAATCCAG 59.461 55.000 0.00 0.00 0.00 3.86
747 834 0.250234 CACTCTCGGCCTTGAATCCA 59.750 55.000 0.00 0.00 0.00 3.41
749 836 1.472376 CCTCACTCTCGGCCTTGAATC 60.472 57.143 0.00 0.00 0.00 2.52
750 837 0.539051 CCTCACTCTCGGCCTTGAAT 59.461 55.000 0.00 0.00 0.00 2.57
752 839 1.228894 ACCTCACTCTCGGCCTTGA 60.229 57.895 0.00 0.00 0.00 3.02
753 840 1.079543 CACCTCACTCTCGGCCTTG 60.080 63.158 0.00 0.00 0.00 3.61
755 842 2.681778 CCACCTCACTCTCGGCCT 60.682 66.667 0.00 0.00 0.00 5.19
756 843 3.775654 CCCACCTCACTCTCGGCC 61.776 72.222 0.00 0.00 0.00 6.13
757 844 4.459089 GCCCACCTCACTCTCGGC 62.459 72.222 0.00 0.00 0.00 5.54
758 845 4.135153 CGCCCACCTCACTCTCGG 62.135 72.222 0.00 0.00 0.00 4.63
777 867 2.359975 GGGCTGGGTCGAACCAAG 60.360 66.667 25.12 18.02 42.46 3.61
787 877 1.000233 TGTAAATGGCTGGGCTGGG 60.000 57.895 0.00 0.00 0.00 4.45
790 880 0.698238 TCAGTGTAAATGGCTGGGCT 59.302 50.000 0.00 0.00 29.44 5.19
794 884 2.002586 CTCGGTCAGTGTAAATGGCTG 58.997 52.381 0.00 0.00 45.69 4.85
800 891 1.290955 CCGGCTCGGTCAGTGTAAA 59.709 57.895 5.56 0.00 42.73 2.01
813 904 4.444081 ACTAGGACGAGGCCGGCT 62.444 66.667 28.56 12.77 44.92 5.52
817 908 2.809010 GCTGACTAGGACGAGGCC 59.191 66.667 0.00 0.00 0.00 5.19
849 941 1.453015 GTGACACACTGGCCAACCA 60.453 57.895 7.01 0.00 46.51 3.67
875 967 2.909457 ATTTGATCGCACGGGCCCAT 62.909 55.000 24.92 1.91 36.38 4.00
884 976 5.005299 CGTATTGACACTGTATTTGATCGCA 59.995 40.000 0.00 0.00 0.00 5.10
887 979 7.987268 TCTCGTATTGACACTGTATTTGATC 57.013 36.000 0.00 0.00 0.00 2.92
888 980 8.948631 AATCTCGTATTGACACTGTATTTGAT 57.051 30.769 0.00 0.00 0.00 2.57
892 984 9.909644 GGTATAATCTCGTATTGACACTGTATT 57.090 33.333 0.00 0.00 0.00 1.89
898 990 6.868864 AGCATGGTATAATCTCGTATTGACAC 59.131 38.462 0.00 0.00 0.00 3.67
908 1000 5.474578 TGGTCTCAGCATGGTATAATCTC 57.525 43.478 0.00 0.00 36.16 2.75
909 1001 6.445451 AATGGTCTCAGCATGGTATAATCT 57.555 37.500 0.00 0.00 36.31 2.40
910 1002 7.365741 CAAAATGGTCTCAGCATGGTATAATC 58.634 38.462 0.00 0.00 36.31 1.75
911 1003 6.239120 GCAAAATGGTCTCAGCATGGTATAAT 60.239 38.462 0.00 0.00 36.31 1.28
916 1008 1.547372 GCAAAATGGTCTCAGCATGGT 59.453 47.619 0.00 0.00 36.31 3.55
917 1009 1.546923 TGCAAAATGGTCTCAGCATGG 59.453 47.619 0.00 0.00 36.31 3.66
918 1010 2.991190 GTTGCAAAATGGTCTCAGCATG 59.009 45.455 0.00 0.00 36.31 4.06
919 1011 2.629137 TGTTGCAAAATGGTCTCAGCAT 59.371 40.909 0.00 0.00 38.04 3.79
920 1012 2.030371 TGTTGCAAAATGGTCTCAGCA 58.970 42.857 0.00 0.00 0.00 4.41
921 1013 2.798976 TGTTGCAAAATGGTCTCAGC 57.201 45.000 0.00 0.00 0.00 4.26
922 1014 5.865552 CCTAATTGTTGCAAAATGGTCTCAG 59.134 40.000 0.00 0.00 0.00 3.35
923 1015 5.782047 CCTAATTGTTGCAAAATGGTCTCA 58.218 37.500 0.00 0.00 0.00 3.27
924 1016 4.627035 GCCTAATTGTTGCAAAATGGTCTC 59.373 41.667 0.00 0.00 0.00 3.36
925 1017 4.568956 GCCTAATTGTTGCAAAATGGTCT 58.431 39.130 0.00 0.00 0.00 3.85
926 1018 3.367630 CGCCTAATTGTTGCAAAATGGTC 59.632 43.478 0.00 0.00 0.00 4.02
927 1019 3.324993 CGCCTAATTGTTGCAAAATGGT 58.675 40.909 0.00 0.00 0.00 3.55
928 1020 2.094099 GCGCCTAATTGTTGCAAAATGG 59.906 45.455 0.00 3.96 0.00 3.16
929 1021 2.735663 TGCGCCTAATTGTTGCAAAATG 59.264 40.909 4.18 0.00 31.69 2.32
930 1022 3.037431 TGCGCCTAATTGTTGCAAAAT 57.963 38.095 4.18 0.71 31.69 1.82
931 1023 2.515926 TGCGCCTAATTGTTGCAAAA 57.484 40.000 4.18 0.00 31.69 2.44
932 1024 2.739885 ATGCGCCTAATTGTTGCAAA 57.260 40.000 4.18 0.00 39.26 3.68
933 1025 3.013219 TCTATGCGCCTAATTGTTGCAA 58.987 40.909 4.18 0.00 39.26 4.08
934 1026 2.637947 TCTATGCGCCTAATTGTTGCA 58.362 42.857 4.18 0.00 40.23 4.08
935 1027 3.003689 ACATCTATGCGCCTAATTGTTGC 59.996 43.478 4.18 0.00 0.00 4.17
936 1028 4.818534 ACATCTATGCGCCTAATTGTTG 57.181 40.909 4.18 1.24 0.00 3.33
937 1029 6.017934 CAGTAACATCTATGCGCCTAATTGTT 60.018 38.462 17.64 17.64 0.00 2.83
938 1030 5.466728 CAGTAACATCTATGCGCCTAATTGT 59.533 40.000 4.18 3.16 0.00 2.71
939 1031 5.696270 TCAGTAACATCTATGCGCCTAATTG 59.304 40.000 4.18 2.50 0.00 2.32
940 1032 5.696724 GTCAGTAACATCTATGCGCCTAATT 59.303 40.000 4.18 0.00 0.00 1.40
941 1033 5.221441 TGTCAGTAACATCTATGCGCCTAAT 60.221 40.000 4.18 0.00 31.20 1.73
942 1034 4.098807 TGTCAGTAACATCTATGCGCCTAA 59.901 41.667 4.18 0.00 31.20 2.69
943 1035 3.634910 TGTCAGTAACATCTATGCGCCTA 59.365 43.478 4.18 0.00 31.20 3.93
944 1036 2.430694 TGTCAGTAACATCTATGCGCCT 59.569 45.455 4.18 0.00 31.20 5.52
945 1037 2.821546 TGTCAGTAACATCTATGCGCC 58.178 47.619 4.18 0.00 31.20 6.53
946 1038 4.051237 TCATGTCAGTAACATCTATGCGC 58.949 43.478 0.00 0.00 45.78 6.09
947 1039 6.588348 TTTCATGTCAGTAACATCTATGCG 57.412 37.500 0.00 0.00 45.78 4.73
969 1061 4.285260 ACGGGTATCACTAGTCACCTTTTT 59.715 41.667 14.48 0.00 0.00 1.94
970 1062 3.836562 ACGGGTATCACTAGTCACCTTTT 59.163 43.478 14.48 1.40 0.00 2.27
971 1063 3.438183 ACGGGTATCACTAGTCACCTTT 58.562 45.455 14.48 3.25 0.00 3.11
972 1064 3.097342 ACGGGTATCACTAGTCACCTT 57.903 47.619 14.48 3.52 0.00 3.50
973 1065 2.822707 ACGGGTATCACTAGTCACCT 57.177 50.000 14.48 0.00 0.00 4.00
974 1066 3.696051 TGTAACGGGTATCACTAGTCACC 59.304 47.826 8.68 8.68 0.00 4.02
975 1067 4.970662 TGTAACGGGTATCACTAGTCAC 57.029 45.455 0.00 0.00 0.00 3.67
976 1068 5.314923 GTTGTAACGGGTATCACTAGTCA 57.685 43.478 0.00 0.00 0.00 3.41
991 1083 6.535274 AAGAAAGTACCACATCGTTGTAAC 57.465 37.500 0.00 0.00 33.76 2.50
992 1084 6.203338 GGAAAGAAAGTACCACATCGTTGTAA 59.797 38.462 0.00 0.00 33.76 2.41
993 1085 5.697633 GGAAAGAAAGTACCACATCGTTGTA 59.302 40.000 0.00 0.00 33.76 2.41
994 1086 4.514066 GGAAAGAAAGTACCACATCGTTGT 59.486 41.667 0.00 0.00 36.15 3.32
995 1087 4.377022 CGGAAAGAAAGTACCACATCGTTG 60.377 45.833 0.00 0.00 0.00 4.10
996 1088 3.744426 CGGAAAGAAAGTACCACATCGTT 59.256 43.478 0.00 0.00 0.00 3.85
997 1089 3.243975 ACGGAAAGAAAGTACCACATCGT 60.244 43.478 0.00 0.00 0.00 3.73
998 1090 3.122948 CACGGAAAGAAAGTACCACATCG 59.877 47.826 0.00 0.00 0.00 3.84
999 1091 3.120304 GCACGGAAAGAAAGTACCACATC 60.120 47.826 0.00 0.00 0.00 3.06
1000 1092 2.812011 GCACGGAAAGAAAGTACCACAT 59.188 45.455 0.00 0.00 0.00 3.21
1001 1093 2.215196 GCACGGAAAGAAAGTACCACA 58.785 47.619 0.00 0.00 0.00 4.17
1002 1094 2.215196 TGCACGGAAAGAAAGTACCAC 58.785 47.619 0.00 0.00 0.00 4.16
1003 1095 2.623878 TGCACGGAAAGAAAGTACCA 57.376 45.000 0.00 0.00 0.00 3.25
1004 1096 4.499037 AATTGCACGGAAAGAAAGTACC 57.501 40.909 0.00 0.00 0.00 3.34
1005 1097 6.665465 AGTTAATTGCACGGAAAGAAAGTAC 58.335 36.000 0.00 0.00 0.00 2.73
1006 1098 6.347079 CGAGTTAATTGCACGGAAAGAAAGTA 60.347 38.462 0.00 0.00 0.00 2.24
1007 1099 5.560183 CGAGTTAATTGCACGGAAAGAAAGT 60.560 40.000 0.00 0.00 0.00 2.66
1008 1100 4.846137 CGAGTTAATTGCACGGAAAGAAAG 59.154 41.667 0.00 0.00 0.00 2.62
1009 1101 4.512198 TCGAGTTAATTGCACGGAAAGAAA 59.488 37.500 0.00 0.00 0.00 2.52
1010 1102 4.059511 TCGAGTTAATTGCACGGAAAGAA 58.940 39.130 0.00 0.00 0.00 2.52
1011 1103 3.655486 TCGAGTTAATTGCACGGAAAGA 58.345 40.909 0.00 0.00 0.00 2.52
1012 1104 3.725010 GCTCGAGTTAATTGCACGGAAAG 60.725 47.826 15.13 0.00 0.00 2.62
1013 1105 2.158841 GCTCGAGTTAATTGCACGGAAA 59.841 45.455 15.13 0.00 0.00 3.13
1014 1106 1.730064 GCTCGAGTTAATTGCACGGAA 59.270 47.619 15.13 0.00 0.00 4.30
1015 1107 1.355971 GCTCGAGTTAATTGCACGGA 58.644 50.000 15.13 0.00 0.00 4.69
1016 1108 0.373716 GGCTCGAGTTAATTGCACGG 59.626 55.000 15.13 0.00 0.00 4.94
1017 1109 1.075542 TGGCTCGAGTTAATTGCACG 58.924 50.000 15.13 0.00 0.00 5.34
1018 1110 2.223340 CCATGGCTCGAGTTAATTGCAC 60.223 50.000 15.13 0.00 0.00 4.57
1019 1111 2.016318 CCATGGCTCGAGTTAATTGCA 58.984 47.619 15.13 0.00 0.00 4.08
1020 1112 2.288666 TCCATGGCTCGAGTTAATTGC 58.711 47.619 15.13 0.00 0.00 3.56
1021 1113 4.963276 TTTCCATGGCTCGAGTTAATTG 57.037 40.909 15.13 5.30 0.00 2.32
1022 1114 5.192927 TCATTTCCATGGCTCGAGTTAATT 58.807 37.500 15.13 0.00 0.00 1.40
1023 1115 4.780815 TCATTTCCATGGCTCGAGTTAAT 58.219 39.130 15.13 2.56 0.00 1.40
1024 1116 4.081142 TCTCATTTCCATGGCTCGAGTTAA 60.081 41.667 15.13 0.00 0.00 2.01
1025 1117 3.450817 TCTCATTTCCATGGCTCGAGTTA 59.549 43.478 15.13 3.62 0.00 2.24
1026 1118 2.237143 TCTCATTTCCATGGCTCGAGTT 59.763 45.455 15.13 0.00 0.00 3.01
1027 1119 1.833630 TCTCATTTCCATGGCTCGAGT 59.166 47.619 15.13 0.00 0.00 4.18
1028 1120 2.609427 TCTCATTTCCATGGCTCGAG 57.391 50.000 8.45 8.45 0.00 4.04
1029 1121 2.224378 GGATCTCATTTCCATGGCTCGA 60.224 50.000 6.96 0.00 33.21 4.04
1030 1122 2.149578 GGATCTCATTTCCATGGCTCG 58.850 52.381 6.96 0.00 33.21 5.03
1063 1155 1.318158 GCAGCATAGCACAGGCCTTT 61.318 55.000 0.00 0.00 42.56 3.11
1066 1158 2.124403 AGCAGCATAGCACAGGCC 60.124 61.111 0.00 0.00 42.56 5.19
1068 1160 2.820619 CGCAGCAGCATAGCACAGG 61.821 63.158 0.82 0.00 42.27 4.00
1103 1197 0.250597 TCCGACGGACAGAGAGACAA 60.251 55.000 13.88 0.00 0.00 3.18
1104 1198 0.250597 TTCCGACGGACAGAGAGACA 60.251 55.000 18.12 0.00 0.00 3.41
1105 1199 1.096416 ATTCCGACGGACAGAGAGAC 58.904 55.000 18.12 0.00 0.00 3.36
1222 1341 2.033194 GGGCTGCGTTGTAGGTGAC 61.033 63.158 0.00 0.00 0.00 3.67
1223 1342 2.345991 GGGCTGCGTTGTAGGTGA 59.654 61.111 0.00 0.00 0.00 4.02
1401 1520 4.162690 GCAAGGGAGTCGCCGGAT 62.163 66.667 5.05 0.00 37.63 4.18
1667 1786 2.185350 CGAAGACATCGCAGCCCT 59.815 61.111 0.00 0.00 45.89 5.19
1684 1803 3.173240 GACGAGCGAGTTGGCGAC 61.173 66.667 0.00 0.00 38.18 5.19
1730 1849 0.250338 GAACACCTTCTTGGCGGACT 60.250 55.000 0.00 0.00 40.22 3.85
1739 1858 1.002087 GGGTCATGTCGAACACCTTCT 59.998 52.381 0.00 0.00 30.31 2.85
1749 1868 2.202797 CTGCTCGGGGTCATGTCG 60.203 66.667 0.00 0.00 0.00 4.35
1754 1873 3.691342 CGTTCCTGCTCGGGGTCA 61.691 66.667 0.00 0.00 0.00 4.02
1757 1876 4.760047 CCACGTTCCTGCTCGGGG 62.760 72.222 0.00 0.00 44.07 5.73
1762 1881 2.140792 AGGACACCACGTTCCTGCT 61.141 57.895 5.72 0.00 0.00 4.24
1791 1910 4.544689 CGCGCGAGTCCAGAGAGG 62.545 72.222 28.94 0.00 39.47 3.69
1822 1941 3.048941 GAAGGTCTAGCGCGTCGGT 62.049 63.158 8.43 8.78 41.50 4.69
1842 1961 1.984570 CAAGGACGAGGAGGAGGCA 60.985 63.158 0.00 0.00 0.00 4.75
1890 2009 1.066752 CACCACCAACGTCGTCTCA 59.933 57.895 0.00 0.00 0.00 3.27
1900 2019 4.162592 CTGAAGCAGCACCACCAA 57.837 55.556 0.00 0.00 0.00 3.67
2094 2213 1.068541 CACGTGACGATGTTCCTCTCA 60.069 52.381 13.70 0.00 0.00 3.27
2242 2361 1.593787 CCATCTCCGCACAGTCTGT 59.406 57.895 0.00 0.00 0.00 3.41
2349 2468 1.304052 AGCCAGGTTGCCGCATTTA 60.304 52.632 0.00 0.00 0.00 1.40
2397 2516 3.112709 GTGAGCACGTCCCTTCGC 61.113 66.667 0.00 0.00 0.00 4.70
2430 2549 2.377810 ATTCATCCCCAGAGCGCCA 61.378 57.895 2.29 0.00 0.00 5.69
2436 2555 2.918248 CGGCCATTCATCCCCAGA 59.082 61.111 2.24 0.00 0.00 3.86
2497 2616 1.449423 CGTTCGGCATGATGTCCCA 60.449 57.895 0.00 0.00 0.00 4.37
2761 2880 1.235281 ACACTCGAGTCGCTGCTGTA 61.235 55.000 16.96 0.00 0.00 2.74
2777 2896 1.207593 GCAGCATCACGTCCAACAC 59.792 57.895 0.00 0.00 0.00 3.32
2937 3056 3.150903 ATTGCACCCCACCTGCACT 62.151 57.895 0.00 0.00 44.32 4.40
2950 3069 1.201414 CATGAAGCTGTGAGCATTGCA 59.799 47.619 11.91 0.00 45.56 4.08
2999 3118 0.179468 TAGCATGGAGTAAACCCGCC 59.821 55.000 0.00 0.00 0.00 6.13
3002 3121 4.381411 GAGATGTAGCATGGAGTAAACCC 58.619 47.826 0.00 0.00 0.00 4.11
3094 3217 7.778083 TCGTATGTACCTTAATCATGACACTT 58.222 34.615 0.00 0.00 0.00 3.16
3128 3253 6.488006 ACCAGGTTGATAAACATAGATGATGC 59.512 38.462 0.00 0.00 39.39 3.91
3215 3340 2.796593 GCACTGAACAAATCCAAAGCAC 59.203 45.455 0.00 0.00 0.00 4.40
3267 3393 4.020218 CGTACCCACCCATATCAATCATCT 60.020 45.833 0.00 0.00 0.00 2.90
3274 3400 1.429930 ATGCGTACCCACCCATATCA 58.570 50.000 0.00 0.00 0.00 2.15
3329 3455 1.479323 GGCGTCTCCAGTATTACCACA 59.521 52.381 0.00 0.00 34.01 4.17
3477 3603 2.492090 CTCGAGGGCAAGACGGAG 59.508 66.667 3.91 0.00 0.00 4.63
3480 3606 1.880340 GATGCTCGAGGGCAAGACG 60.880 63.158 15.58 0.00 45.68 4.18
3490 3616 3.579709 GTCAAGAACTGAAGATGCTCGA 58.420 45.455 0.00 0.00 35.22 4.04
3491 3617 2.670414 GGTCAAGAACTGAAGATGCTCG 59.330 50.000 0.00 0.00 35.22 5.03
3492 3618 3.434984 GTGGTCAAGAACTGAAGATGCTC 59.565 47.826 0.00 0.00 35.22 4.26
3493 3619 3.406764 GTGGTCAAGAACTGAAGATGCT 58.593 45.455 0.00 0.00 35.22 3.79
3494 3620 2.485814 GGTGGTCAAGAACTGAAGATGC 59.514 50.000 0.00 0.00 35.22 3.91
3495 3621 3.499918 GTGGTGGTCAAGAACTGAAGATG 59.500 47.826 0.00 0.00 35.22 2.90
3496 3622 3.744660 GTGGTGGTCAAGAACTGAAGAT 58.255 45.455 0.00 0.00 35.22 2.40
3497 3623 2.483013 CGTGGTGGTCAAGAACTGAAGA 60.483 50.000 0.00 0.00 35.22 2.87
3498 3624 1.867233 CGTGGTGGTCAAGAACTGAAG 59.133 52.381 0.00 0.00 35.22 3.02
3499 3625 1.948104 CGTGGTGGTCAAGAACTGAA 58.052 50.000 0.00 0.00 35.22 3.02
3500 3626 0.531974 GCGTGGTGGTCAAGAACTGA 60.532 55.000 0.00 0.00 0.00 3.41
3501 3627 0.532862 AGCGTGGTGGTCAAGAACTG 60.533 55.000 0.00 0.00 0.00 3.16
3502 3628 0.249911 GAGCGTGGTGGTCAAGAACT 60.250 55.000 0.00 0.00 44.60 3.01
3503 3629 2.235546 GAGCGTGGTGGTCAAGAAC 58.764 57.895 0.00 0.00 44.60 3.01
3504 3630 4.771127 GAGCGTGGTGGTCAAGAA 57.229 55.556 0.00 0.00 44.60 2.52
3509 3635 1.626654 CGTCAATGAGCGTGGTGGTC 61.627 60.000 0.00 0.00 45.46 4.02
3516 3642 2.125512 GAGGCCGTCAATGAGCGT 60.126 61.111 0.00 0.00 0.00 5.07
3546 3672 2.552155 GGATGTGCAAGGTGGTGTTCTA 60.552 50.000 0.00 0.00 0.00 2.10
3547 3673 1.609208 GATGTGCAAGGTGGTGTTCT 58.391 50.000 0.00 0.00 0.00 3.01
3593 3719 3.667087 GCAACAGTCCGCCATGAA 58.333 55.556 0.00 0.00 0.00 2.57
3605 3731 1.203038 ATGGAACTCATGGTGGCAACA 60.203 47.619 8.12 8.12 38.60 3.33
3635 3761 0.537188 CATGGACCAGGTACGAAGCT 59.463 55.000 0.00 0.00 0.00 3.74
3649 3775 0.107703 GTTCCTCATGGTCGCATGGA 60.108 55.000 0.00 0.00 33.61 3.41
3663 3789 1.980772 GCAGCCAGCAATGGTTCCT 60.981 57.895 0.00 0.00 44.79 3.36
3721 3847 1.107114 GCTCCTCCTGAAGATCGTCA 58.893 55.000 10.99 10.99 0.00 4.35
3788 3926 2.441164 ACTTTTGGGCACACCGCA 60.441 55.556 0.00 0.00 45.17 5.69
3808 3946 4.717629 CTCTGTCCCGCGAACGCA 62.718 66.667 18.69 0.00 42.06 5.24
3813 3951 3.733960 CACGTCTCTGTCCCGCGA 61.734 66.667 8.23 0.00 0.00 5.87
3834 3972 2.654912 CCTCGTCAACCGTTGCGAC 61.655 63.158 19.81 9.04 36.07 5.19
3838 3976 1.569493 CAAGCCTCGTCAACCGTTG 59.431 57.895 4.78 4.78 37.94 4.10
3839 3977 2.251642 GCAAGCCTCGTCAACCGTT 61.252 57.895 0.00 0.00 37.94 4.44
3883 4021 4.748144 GGCACCCTCAGGCCCAAG 62.748 72.222 0.00 0.00 44.53 3.61
3999 4142 1.337728 TGCCACCAGTAATGACACTCG 60.338 52.381 0.00 0.00 0.00 4.18
4012 4155 0.478072 AGACCAACTGATTGCCACCA 59.522 50.000 0.00 0.00 34.17 4.17
4023 4166 1.470051 ACCAAAAACGCAGACCAACT 58.530 45.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.