Multiple sequence alignment - TraesCS1A01G372700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G372700 chr1A 100.000 4437 0 0 1 4437 549060625 549065061 0.000000e+00 8194.0
1 TraesCS1A01G372700 chr1A 95.337 193 7 2 4067 4258 226567343 226567152 5.580000e-79 305.0
2 TraesCS1A01G372700 chr1A 94.149 188 11 0 4250 4437 226567123 226566936 2.020000e-73 287.0
3 TraesCS1A01G372700 chr1A 97.297 74 2 0 3907 3980 94758583 94758656 4.660000e-25 126.0
4 TraesCS1A01G372700 chr1A 94.048 84 2 1 3972 4055 94758617 94758697 1.680000e-24 124.0
5 TraesCS1A01G372700 chr1B 90.259 2433 155 41 245 2627 625906576 625908976 0.000000e+00 3105.0
6 TraesCS1A01G372700 chr1B 90.741 972 58 19 2622 3580 625909025 625909977 0.000000e+00 1267.0
7 TraesCS1A01G372700 chr1B 81.301 246 44 2 2109 2353 625908314 625908558 9.730000e-47 198.0
8 TraesCS1A01G372700 chr1B 87.586 145 18 0 1539 1683 625907681 625907825 7.630000e-38 169.0
9 TraesCS1A01G372700 chr1B 92.683 82 5 1 82 163 625814427 625814507 2.800000e-22 117.0
10 TraesCS1A01G372700 chr1B 95.238 63 3 0 1269 1331 168510364 168510302 2.820000e-17 100.0
11 TraesCS1A01G372700 chr1B 100.000 28 0 0 1917 1944 625908122 625908149 8.000000e-03 52.8
12 TraesCS1A01G372700 chr1D 91.288 2112 114 34 540 2627 455121517 455123582 0.000000e+00 2817.0
13 TraesCS1A01G372700 chr1D 91.184 1157 71 11 2622 3763 455123631 455124771 0.000000e+00 1543.0
14 TraesCS1A01G372700 chr1D 83.260 227 38 0 2691 2917 455123514 455123740 4.500000e-50 209.0
15 TraesCS1A01G372700 chr1D 94.521 73 4 0 75 147 455118394 455118466 3.630000e-21 113.0
16 TraesCS1A01G372700 chr1D 86.567 67 9 0 1748 1814 455122823 455122889 1.710000e-09 75.0
17 TraesCS1A01G372700 chr5D 97.044 203 3 3 4058 4258 207020608 207020407 5.500000e-89 339.0
18 TraesCS1A01G372700 chr5D 98.404 188 3 0 4250 4437 207020378 207020191 9.200000e-87 331.0
19 TraesCS1A01G372700 chr5D 95.567 203 6 3 4058 4258 178460184 178460385 5.540000e-84 322.0
20 TraesCS1A01G372700 chr5D 97.340 188 3 1 4250 4437 178460414 178460599 7.160000e-83 318.0
21 TraesCS1A01G372700 chr2B 96.216 185 7 0 4250 4434 296490088 296490272 2.010000e-78 303.0
22 TraesCS1A01G372700 chr2B 93.103 203 10 4 4058 4258 296489744 296489944 1.210000e-75 294.0
23 TraesCS1A01G372700 chr2B 89.011 182 12 1 4256 4437 118595663 118595836 7.470000e-53 219.0
24 TraesCS1A01G372700 chr2B 89.011 182 12 1 4256 4437 363910446 363910619 7.470000e-53 219.0
25 TraesCS1A01G372700 chr2B 87.709 179 14 1 4255 4433 225941844 225941674 7.530000e-48 202.0
26 TraesCS1A01G372700 chr2B 89.262 149 10 3 4058 4203 225942095 225941950 9.800000e-42 182.0
27 TraesCS1A01G372700 chr2B 85.135 148 16 4 4059 4203 363910198 363910342 3.580000e-31 147.0
28 TraesCS1A01G372700 chr2B 94.805 77 2 2 4183 4258 296489984 296490059 7.800000e-23 119.0
29 TraesCS1A01G372700 chr7A 89.011 182 12 3 4256 4437 499904845 499904672 7.470000e-53 219.0
30 TraesCS1A01G372700 chr4A 89.011 182 12 1 4256 4437 374412922 374412749 7.470000e-53 219.0
31 TraesCS1A01G372700 chr4A 80.455 220 19 10 4059 4258 374413170 374412955 3.580000e-31 147.0
32 TraesCS1A01G372700 chr3D 89.385 179 11 1 4255 4433 355905742 355905912 7.470000e-53 219.0
33 TraesCS1A01G372700 chr3D 97.297 74 2 0 3907 3980 62309893 62309966 4.660000e-25 126.0
34 TraesCS1A01G372700 chr3D 96.491 57 2 0 3850 3906 62309872 62309928 1.310000e-15 95.3
35 TraesCS1A01G372700 chr5B 88.462 182 13 2 4256 4437 44979757 44979584 3.480000e-51 213.0
36 TraesCS1A01G372700 chr5B 85.135 148 16 4 4059 4203 44980005 44979861 3.580000e-31 147.0
37 TraesCS1A01G372700 chr7B 87.912 182 14 2 4256 4437 220966346 220966519 1.620000e-49 207.0
38 TraesCS1A01G372700 chr7B 85.135 148 16 4 4059 4203 220966098 220966242 3.580000e-31 147.0
39 TraesCS1A01G372700 chrUn 97.297 74 2 0 3907 3980 45093708 45093781 4.660000e-25 126.0
40 TraesCS1A01G372700 chrUn 97.297 74 2 0 3907 3980 171043995 171044068 4.660000e-25 126.0
41 TraesCS1A01G372700 chrUn 97.297 74 2 0 3907 3980 333497841 333497914 4.660000e-25 126.0
42 TraesCS1A01G372700 chrUn 97.297 74 2 0 3907 3980 405915492 405915565 4.660000e-25 126.0
43 TraesCS1A01G372700 chrUn 94.048 84 2 1 3972 4055 45093742 45093822 1.680000e-24 124.0
44 TraesCS1A01G372700 chrUn 94.048 84 2 1 3972 4055 171044029 171044109 1.680000e-24 124.0
45 TraesCS1A01G372700 chrUn 94.048 84 2 1 3972 4055 333497875 333497955 1.680000e-24 124.0
46 TraesCS1A01G372700 chrUn 94.048 84 2 1 3972 4055 405915526 405915606 1.680000e-24 124.0
47 TraesCS1A01G372700 chrUn 96.429 56 2 0 3851 3906 45093688 45093743 4.730000e-15 93.5
48 TraesCS1A01G372700 chrUn 96.429 56 2 0 3851 3906 171043975 171044030 4.730000e-15 93.5
49 TraesCS1A01G372700 chrUn 96.429 56 2 0 3851 3906 333497821 333497876 4.730000e-15 93.5
50 TraesCS1A01G372700 chrUn 96.429 56 2 0 3851 3906 405915472 405915527 4.730000e-15 93.5
51 TraesCS1A01G372700 chr7D 97.297 74 2 0 3907 3980 381937280 381937207 4.660000e-25 126.0
52 TraesCS1A01G372700 chr7D 94.048 84 2 1 3972 4055 381937246 381937166 1.680000e-24 124.0
53 TraesCS1A01G372700 chr7D 96.429 56 2 0 3851 3906 381937300 381937245 4.730000e-15 93.5
54 TraesCS1A01G372700 chr6D 97.297 74 2 0 3907 3980 283206455 283206528 4.660000e-25 126.0
55 TraesCS1A01G372700 chr6D 97.297 74 2 0 3907 3980 425972331 425972404 4.660000e-25 126.0
56 TraesCS1A01G372700 chr6D 94.048 84 2 1 3972 4055 283206489 283206569 1.680000e-24 124.0
57 TraesCS1A01G372700 chr6D 96.429 56 2 0 3851 3906 283206435 283206490 4.730000e-15 93.5
58 TraesCS1A01G372700 chr6D 96.429 56 2 0 3851 3906 425972311 425972366 4.730000e-15 93.5
59 TraesCS1A01G372700 chr6B 94.048 84 2 1 3972 4055 388156529 388156449 1.680000e-24 124.0
60 TraesCS1A01G372700 chr4D 94.048 84 2 1 3972 4055 241367861 241367781 1.680000e-24 124.0
61 TraesCS1A01G372700 chr4D 96.429 56 2 0 3851 3906 241284089 241284034 4.730000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G372700 chr1A 549060625 549065061 4436 False 8194.000000 8194 100.0000 1 4437 1 chr1A.!!$F1 4436
1 TraesCS1A01G372700 chr1B 625906576 625909977 3401 False 958.360000 3105 89.9774 245 3580 5 chr1B.!!$F2 3335
2 TraesCS1A01G372700 chr1D 455118394 455124771 6377 False 951.400000 2817 89.3640 75 3763 5 chr1D.!!$F1 3688
3 TraesCS1A01G372700 chr2B 296489744 296490272 528 False 238.666667 303 94.7080 4058 4434 3 chr2B.!!$F2 376

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 1673 0.382873 AACACACGAGCGTGAGTACA 59.617 50.0 27.31 0.0 46.15 2.90 F
1056 3785 0.321919 GCTGAGCCACTGACAATGGA 60.322 55.0 7.22 0.0 39.87 3.41 F
1858 4605 0.534412 ATCAGAAGGGCTCAGACACG 59.466 55.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1189 3918 1.079127 CTGGTTGTACCGCTCCTGG 60.079 63.158 0.0 0.0 42.58 4.45 R
2761 5574 0.106569 TATTCCCTGCGTCTCCGGTA 60.107 55.000 0.0 0.0 33.68 4.02 R
3771 6599 0.030773 TTTTTGCAACGCACGGCATA 59.969 45.000 0.0 0.0 38.71 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.658799 TCTTTCTAACATAGTTTTGATCTCAGG 57.341 33.333 0.00 0.00 0.00 3.86
31 32 9.442047 CTTTCTAACATAGTTTTGATCTCAGGT 57.558 33.333 0.00 0.00 0.00 4.00
32 33 9.793259 TTTCTAACATAGTTTTGATCTCAGGTT 57.207 29.630 0.00 0.00 0.00 3.50
33 34 9.793259 TTCTAACATAGTTTTGATCTCAGGTTT 57.207 29.630 0.00 0.00 0.00 3.27
37 38 9.965902 AACATAGTTTTGATCTCAGGTTTAGAT 57.034 29.630 0.00 0.00 36.40 1.98
38 39 9.606631 ACATAGTTTTGATCTCAGGTTTAGATC 57.393 33.333 6.21 6.21 46.36 2.75
48 49 9.660180 GATCTCAGGTTTAGATCAAAACTAACT 57.340 33.333 7.95 0.00 42.48 2.24
50 51 9.490379 TCTCAGGTTTAGATCAAAACTAACTTC 57.510 33.333 7.56 0.00 42.48 3.01
51 52 9.273016 CTCAGGTTTAGATCAAAACTAACTTCA 57.727 33.333 7.56 0.00 42.48 3.02
52 53 9.052759 TCAGGTTTAGATCAAAACTAACTTCAC 57.947 33.333 7.56 0.00 42.48 3.18
53 54 8.836413 CAGGTTTAGATCAAAACTAACTTCACA 58.164 33.333 7.56 0.00 42.48 3.58
54 55 9.574516 AGGTTTAGATCAAAACTAACTTCACAT 57.425 29.630 6.45 0.00 42.56 3.21
142 143 9.626045 CCAAAACTAAGTTAAGAAAATGCTAGG 57.374 33.333 0.00 0.00 0.00 3.02
163 1635 4.652881 AGGAGTGCTCATGTGATTCATCTA 59.347 41.667 0.00 0.00 34.09 1.98
164 1636 4.989797 GGAGTGCTCATGTGATTCATCTAG 59.010 45.833 0.00 0.00 34.09 2.43
165 1637 5.221402 GGAGTGCTCATGTGATTCATCTAGA 60.221 44.000 0.00 0.00 34.09 2.43
166 1638 6.422344 AGTGCTCATGTGATTCATCTAGAT 57.578 37.500 0.00 0.00 34.09 1.98
167 1639 6.457355 AGTGCTCATGTGATTCATCTAGATC 58.543 40.000 1.03 0.00 34.09 2.75
168 1640 6.268158 AGTGCTCATGTGATTCATCTAGATCT 59.732 38.462 1.03 0.00 34.09 2.75
169 1641 7.450944 AGTGCTCATGTGATTCATCTAGATCTA 59.549 37.037 1.03 1.69 34.09 1.98
201 1673 0.382873 AACACACGAGCGTGAGTACA 59.617 50.000 27.31 0.00 46.15 2.90
216 1688 5.050972 CGTGAGTACACCTTCAAGTTTCTTC 60.051 44.000 0.00 0.00 43.34 2.87
220 1692 3.821748 ACACCTTCAAGTTTCTTCTCCC 58.178 45.455 0.00 0.00 0.00 4.30
221 1693 3.202151 ACACCTTCAAGTTTCTTCTCCCA 59.798 43.478 0.00 0.00 0.00 4.37
222 1694 4.141158 ACACCTTCAAGTTTCTTCTCCCAT 60.141 41.667 0.00 0.00 0.00 4.00
223 1695 4.217118 CACCTTCAAGTTTCTTCTCCCATG 59.783 45.833 0.00 0.00 0.00 3.66
224 1696 4.141158 ACCTTCAAGTTTCTTCTCCCATGT 60.141 41.667 0.00 0.00 0.00 3.21
225 1697 4.829492 CCTTCAAGTTTCTTCTCCCATGTT 59.171 41.667 0.00 0.00 0.00 2.71
226 1698 5.302823 CCTTCAAGTTTCTTCTCCCATGTTT 59.697 40.000 0.00 0.00 0.00 2.83
227 1699 6.490040 CCTTCAAGTTTCTTCTCCCATGTTTA 59.510 38.462 0.00 0.00 0.00 2.01
228 1700 7.014230 CCTTCAAGTTTCTTCTCCCATGTTTAA 59.986 37.037 0.00 0.00 0.00 1.52
229 1701 7.889873 TCAAGTTTCTTCTCCCATGTTTAAA 57.110 32.000 0.00 0.00 0.00 1.52
230 1702 8.477419 TCAAGTTTCTTCTCCCATGTTTAAAT 57.523 30.769 0.00 0.00 0.00 1.40
231 1703 8.359642 TCAAGTTTCTTCTCCCATGTTTAAATG 58.640 33.333 0.00 0.00 0.00 2.32
232 1704 6.691508 AGTTTCTTCTCCCATGTTTAAATGC 58.308 36.000 0.00 0.00 0.00 3.56
233 1705 6.267471 AGTTTCTTCTCCCATGTTTAAATGCA 59.733 34.615 0.00 0.00 0.00 3.96
234 1706 6.855763 TTCTTCTCCCATGTTTAAATGCAT 57.144 33.333 0.00 0.00 0.00 3.96
235 1707 6.455360 TCTTCTCCCATGTTTAAATGCATC 57.545 37.500 0.00 0.00 0.00 3.91
236 1708 5.360714 TCTTCTCCCATGTTTAAATGCATCC 59.639 40.000 0.00 0.00 0.00 3.51
237 1709 4.870636 TCTCCCATGTTTAAATGCATCCT 58.129 39.130 0.00 0.00 0.00 3.24
238 1710 5.271598 TCTCCCATGTTTAAATGCATCCTT 58.728 37.500 0.00 0.00 0.00 3.36
239 1711 5.721000 TCTCCCATGTTTAAATGCATCCTTT 59.279 36.000 0.00 0.00 0.00 3.11
240 1712 6.213195 TCTCCCATGTTTAAATGCATCCTTTT 59.787 34.615 0.00 0.00 0.00 2.27
241 1713 6.777782 TCCCATGTTTAAATGCATCCTTTTT 58.222 32.000 0.00 0.00 0.00 1.94
266 1738 4.793071 CGTGTTTAAATGCATCCTTGTGA 58.207 39.130 0.00 0.00 0.00 3.58
425 1917 7.990314 AGTGTTTATTTTGTTAGTTTTGCCCAT 59.010 29.630 0.00 0.00 0.00 4.00
487 1979 6.237808 CGCTGACAAAAACTAAGCAACATTTT 60.238 34.615 0.00 0.00 33.41 1.82
567 3274 4.424061 TGAGCATTTGAGGTCGAAATTG 57.576 40.909 0.00 0.00 38.81 2.32
588 3295 5.776173 TGGAAGAACCATTTCGCTAAAAA 57.224 34.783 0.00 0.00 44.64 1.94
717 3437 4.988598 CGGCTTGGCACGTGGACT 62.989 66.667 18.88 0.00 0.00 3.85
816 3536 4.766891 GCAGTTCTCTATATCCTCTCTGCT 59.233 45.833 0.00 0.00 41.31 4.24
850 3570 2.284798 CTGTCATGCTCCGTACGCCT 62.285 60.000 10.49 0.00 0.00 5.52
1002 3731 3.046087 CAGCTCCACACACCAGCG 61.046 66.667 0.00 0.00 38.26 5.18
1033 3762 2.202492 GCACTCGATCGCGTCTGT 60.202 61.111 11.09 1.14 38.98 3.41
1056 3785 0.321919 GCTGAGCCACTGACAATGGA 60.322 55.000 7.22 0.00 39.87 3.41
1089 3818 4.479993 CAGGAAGGAGGCCGCCTG 62.480 72.222 30.41 20.70 41.66 4.85
1465 4200 4.643387 ACGGCCCACAAGGAGCAC 62.643 66.667 0.00 0.00 38.24 4.40
1521 4256 3.052082 CCACGACAAGCAGGGCAG 61.052 66.667 0.00 0.00 0.00 4.85
1825 4572 2.436646 CAGGTCCGTGGGCATGAC 60.437 66.667 0.00 0.00 0.00 3.06
1840 4587 1.852157 ATGACACGGGCCACAAGGAT 61.852 55.000 4.39 0.00 36.89 3.24
1856 4603 1.198713 GGATCAGAAGGGCTCAGACA 58.801 55.000 0.00 0.00 0.00 3.41
1858 4605 0.534412 ATCAGAAGGGCTCAGACACG 59.466 55.000 0.00 0.00 0.00 4.49
1898 4645 2.580867 CTGGAGACTACGCTGCGC 60.581 66.667 23.51 0.00 0.00 6.09
2224 4971 2.027625 GAAGGGCAAGGACGTCACG 61.028 63.158 18.91 0.00 0.00 4.35
2467 5214 1.968540 GCAAGGGAAGAACGCTGCT 60.969 57.895 0.00 0.00 41.58 4.24
2543 5290 3.324099 GAGCCGAGCTTCGACACGA 62.324 63.158 7.07 0.00 43.74 4.35
2552 5299 3.189010 TTCGACACGAGCACGCAGA 62.189 57.895 2.62 0.00 43.96 4.26
2558 5317 3.782244 CGAGCACGCAGACCAAGC 61.782 66.667 0.00 0.00 0.00 4.01
2595 5354 2.264794 GGACAAGACCCGCGACAT 59.735 61.111 8.23 0.00 0.00 3.06
2597 5356 1.080093 GACAAGACCCGCGACATGA 60.080 57.895 8.23 0.00 0.00 3.07
2602 5361 3.636313 GACCCGCGACATGACCGAA 62.636 63.158 8.23 0.00 0.00 4.30
2612 5371 2.811431 GACATGACCGAACAAACCATGA 59.189 45.455 0.00 0.00 38.29 3.07
2672 5485 3.172575 CTGACACGGCTGCGTACG 61.173 66.667 11.84 11.84 0.00 3.67
2689 5502 0.966920 ACGTCAAGGACTCGGTGATT 59.033 50.000 0.00 0.00 0.00 2.57
2731 5544 3.231736 AAGACCCGCGACACCACT 61.232 61.111 8.23 0.00 0.00 4.00
2734 5547 3.509137 GACCCGCGACACCACTGAA 62.509 63.158 8.23 0.00 0.00 3.02
2874 5687 2.099263 CGTACATCAAGGACTCGGTGAT 59.901 50.000 0.00 0.00 32.17 3.06
2956 5769 3.379445 GGGGAGGCGACGAACAGA 61.379 66.667 0.00 0.00 0.00 3.41
2958 5771 2.637383 GGGAGGCGACGAACAGAGT 61.637 63.158 0.00 0.00 0.00 3.24
3038 5851 4.295119 GTGCACCGTCGTGTCCCT 62.295 66.667 5.22 0.00 42.39 4.20
3041 5854 3.299977 CACCGTCGTGTCCCTCCA 61.300 66.667 0.00 0.00 35.10 3.86
3054 5867 2.959707 GTCCCTCCACGAGTATCTGATT 59.040 50.000 0.00 0.00 0.00 2.57
3123 5944 1.604308 CATGCAGGGTGAAGGCACA 60.604 57.895 0.00 0.00 46.96 4.57
3258 6079 2.423898 GGAGCTCATCCCGGTCGAA 61.424 63.158 17.19 0.00 43.01 3.71
3318 6139 2.663826 AGAAATCCGAGTGAGCAGAC 57.336 50.000 0.00 0.00 0.00 3.51
3335 6156 3.101428 CCCACACGTACGTCGCAC 61.101 66.667 19.94 0.00 44.19 5.34
3391 6212 6.846283 GTCACTTTGATCAGACACGTTTAAAG 59.154 38.462 7.71 2.31 0.00 1.85
3392 6213 5.621228 CACTTTGATCAGACACGTTTAAAGC 59.379 40.000 0.00 0.00 0.00 3.51
3410 6231 8.445493 GTTTAAAGCGGTGTTGTATATAGTTGT 58.555 33.333 0.00 0.00 0.00 3.32
3411 6232 9.650539 TTTAAAGCGGTGTTGTATATAGTTGTA 57.349 29.630 0.00 0.00 0.00 2.41
3412 6233 7.766219 AAAGCGGTGTTGTATATAGTTGTAG 57.234 36.000 0.00 0.00 0.00 2.74
3473 6294 7.438459 GTGAGCTGAATAATGGTCGTTTATAGT 59.562 37.037 0.00 0.00 33.88 2.12
3481 6302 9.774413 AATAATGGTCGTTTATAGTTAAGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
3482 6303 7.427989 AATGGTCGTTTATAGTTAAGAGGGA 57.572 36.000 0.00 0.00 0.00 4.20
3483 6304 6.212888 TGGTCGTTTATAGTTAAGAGGGAC 57.787 41.667 0.00 0.00 0.00 4.46
3485 6306 7.118723 TGGTCGTTTATAGTTAAGAGGGACTA 58.881 38.462 0.00 0.00 41.55 2.59
3580 6406 7.661437 GGAATGAAATGGCTATGTAGTGTGATA 59.339 37.037 0.00 0.00 0.00 2.15
3587 6413 4.917998 GGCTATGTAGTGTGATACATCGTG 59.082 45.833 2.81 0.00 43.61 4.35
3590 6416 6.577800 GCTATGTAGTGTGATACATCGTGTAC 59.422 42.308 2.81 0.00 43.61 2.90
3608 6434 5.169295 GTGTACTTAGCCAAGTGAACTAGG 58.831 45.833 7.86 0.00 44.81 3.02
3683 6509 3.731431 TCAAGCTCTATAGGGGGAAACA 58.269 45.455 0.79 0.00 0.00 2.83
3699 6525 4.532834 GGAAACATATCACCTTGGGCTTA 58.467 43.478 0.00 0.00 0.00 3.09
3763 6591 2.180432 ACGCCTCCTTTGGTTCTAAC 57.820 50.000 0.00 0.00 0.00 2.34
3764 6592 1.697982 ACGCCTCCTTTGGTTCTAACT 59.302 47.619 0.00 0.00 0.00 2.24
3765 6593 2.901839 ACGCCTCCTTTGGTTCTAACTA 59.098 45.455 0.00 0.00 0.00 2.24
3766 6594 3.056035 ACGCCTCCTTTGGTTCTAACTAG 60.056 47.826 0.00 0.00 0.00 2.57
3767 6595 3.679083 CGCCTCCTTTGGTTCTAACTAGG 60.679 52.174 0.00 0.00 0.00 3.02
3768 6596 3.518303 GCCTCCTTTGGTTCTAACTAGGA 59.482 47.826 0.00 0.00 33.39 2.94
3769 6597 4.019591 GCCTCCTTTGGTTCTAACTAGGAA 60.020 45.833 0.00 0.00 33.75 3.36
3770 6598 5.514310 GCCTCCTTTGGTTCTAACTAGGAAA 60.514 44.000 0.00 0.00 33.75 3.13
3771 6599 6.722328 CCTCCTTTGGTTCTAACTAGGAAAT 58.278 40.000 0.00 0.00 33.75 2.17
3772 6600 7.582828 GCCTCCTTTGGTTCTAACTAGGAAATA 60.583 40.741 0.00 0.00 33.75 1.40
3773 6601 8.495260 CCTCCTTTGGTTCTAACTAGGAAATAT 58.505 37.037 0.00 0.00 33.75 1.28
3774 6602 9.331282 CTCCTTTGGTTCTAACTAGGAAATATG 57.669 37.037 0.00 0.82 33.75 1.78
3775 6603 7.773690 TCCTTTGGTTCTAACTAGGAAATATGC 59.226 37.037 0.00 0.00 32.34 3.14
3776 6604 7.013369 CCTTTGGTTCTAACTAGGAAATATGCC 59.987 40.741 0.00 0.00 0.00 4.40
3777 6605 5.607477 TGGTTCTAACTAGGAAATATGCCG 58.393 41.667 0.00 0.00 0.00 5.69
3778 6606 5.129815 TGGTTCTAACTAGGAAATATGCCGT 59.870 40.000 0.00 0.00 0.00 5.68
3779 6607 5.465724 GGTTCTAACTAGGAAATATGCCGTG 59.534 44.000 0.00 0.00 0.00 4.94
3780 6608 4.628074 TCTAACTAGGAAATATGCCGTGC 58.372 43.478 0.00 0.00 0.00 5.34
3781 6609 1.865865 ACTAGGAAATATGCCGTGCG 58.134 50.000 0.00 0.00 0.00 5.34
3782 6610 1.138266 ACTAGGAAATATGCCGTGCGT 59.862 47.619 0.00 0.00 0.00 5.24
3783 6611 2.210116 CTAGGAAATATGCCGTGCGTT 58.790 47.619 0.00 0.00 0.00 4.84
3784 6612 0.732571 AGGAAATATGCCGTGCGTTG 59.267 50.000 0.00 0.00 0.00 4.10
3785 6613 0.865639 GGAAATATGCCGTGCGTTGC 60.866 55.000 0.00 0.00 0.00 4.17
3786 6614 0.179176 GAAATATGCCGTGCGTTGCA 60.179 50.000 0.00 0.00 42.52 4.08
3787 6615 0.242286 AAATATGCCGTGCGTTGCAA 59.758 45.000 0.00 0.00 41.47 4.08
3788 6616 0.242286 AATATGCCGTGCGTTGCAAA 59.758 45.000 0.00 0.00 41.47 3.68
3789 6617 0.242286 ATATGCCGTGCGTTGCAAAA 59.758 45.000 0.00 0.00 41.47 2.44
3790 6618 0.030773 TATGCCGTGCGTTGCAAAAA 59.969 45.000 0.00 0.00 41.47 1.94
3810 6638 3.876309 AAAAGTATCACACACCTGGGT 57.124 42.857 0.00 0.00 0.00 4.51
3811 6639 3.418684 AAAGTATCACACACCTGGGTC 57.581 47.619 0.00 0.00 0.00 4.46
3812 6640 2.327325 AGTATCACACACCTGGGTCT 57.673 50.000 0.00 0.00 0.00 3.85
3813 6641 3.468071 AGTATCACACACCTGGGTCTA 57.532 47.619 0.00 0.00 0.00 2.59
3814 6642 3.097614 AGTATCACACACCTGGGTCTAC 58.902 50.000 0.00 0.00 0.00 2.59
3815 6643 2.024176 ATCACACACCTGGGTCTACA 57.976 50.000 0.00 0.00 0.00 2.74
3816 6644 1.338107 TCACACACCTGGGTCTACAG 58.662 55.000 0.00 0.00 38.21 2.74
3817 6645 0.320771 CACACACCTGGGTCTACAGC 60.321 60.000 0.00 0.00 37.16 4.40
3818 6646 0.471971 ACACACCTGGGTCTACAGCT 60.472 55.000 0.00 0.00 37.16 4.24
3819 6647 0.036952 CACACCTGGGTCTACAGCTG 60.037 60.000 13.48 13.48 37.16 4.24
3820 6648 1.078848 CACCTGGGTCTACAGCTGC 60.079 63.158 15.27 0.00 37.16 5.25
3821 6649 2.294078 ACCTGGGTCTACAGCTGCC 61.294 63.158 15.27 6.59 37.16 4.85
3822 6650 1.992277 CCTGGGTCTACAGCTGCCT 60.992 63.158 15.27 0.00 37.16 4.75
3823 6651 1.519719 CTGGGTCTACAGCTGCCTC 59.480 63.158 15.27 0.00 0.00 4.70
3824 6652 0.975040 CTGGGTCTACAGCTGCCTCT 60.975 60.000 15.27 0.00 0.00 3.69
3825 6653 0.545309 TGGGTCTACAGCTGCCTCTT 60.545 55.000 15.27 0.00 0.00 2.85
3826 6654 0.615850 GGGTCTACAGCTGCCTCTTT 59.384 55.000 15.27 0.00 0.00 2.52
3827 6655 1.677217 GGGTCTACAGCTGCCTCTTTG 60.677 57.143 15.27 0.00 0.00 2.77
3828 6656 1.677217 GGTCTACAGCTGCCTCTTTGG 60.677 57.143 15.27 0.00 39.35 3.28
3829 6657 1.002544 GTCTACAGCTGCCTCTTTGGT 59.997 52.381 15.27 0.00 38.35 3.67
3830 6658 1.699634 TCTACAGCTGCCTCTTTGGTT 59.300 47.619 15.27 0.00 38.35 3.67
3831 6659 2.079925 CTACAGCTGCCTCTTTGGTTC 58.920 52.381 15.27 0.00 38.35 3.62
3832 6660 0.475906 ACAGCTGCCTCTTTGGTTCT 59.524 50.000 15.27 0.00 38.35 3.01
3833 6661 1.699634 ACAGCTGCCTCTTTGGTTCTA 59.300 47.619 15.27 0.00 38.35 2.10
3834 6662 2.106511 ACAGCTGCCTCTTTGGTTCTAA 59.893 45.455 15.27 0.00 38.35 2.10
3835 6663 2.485814 CAGCTGCCTCTTTGGTTCTAAC 59.514 50.000 0.00 0.00 38.35 2.34
3836 6664 2.373502 AGCTGCCTCTTTGGTTCTAACT 59.626 45.455 0.00 0.00 38.35 2.24
3837 6665 3.583086 AGCTGCCTCTTTGGTTCTAACTA 59.417 43.478 0.00 0.00 38.35 2.24
3838 6666 3.935828 GCTGCCTCTTTGGTTCTAACTAG 59.064 47.826 0.00 0.00 38.35 2.57
3839 6667 4.508662 CTGCCTCTTTGGTTCTAACTAGG 58.491 47.826 0.00 0.00 38.35 3.02
3840 6668 4.164981 TGCCTCTTTGGTTCTAACTAGGA 58.835 43.478 0.00 0.00 38.35 2.94
3841 6669 4.595781 TGCCTCTTTGGTTCTAACTAGGAA 59.404 41.667 0.00 0.00 38.35 3.36
3842 6670 5.072600 TGCCTCTTTGGTTCTAACTAGGAAA 59.927 40.000 0.00 0.00 38.35 3.13
3843 6671 6.181190 GCCTCTTTGGTTCTAACTAGGAAAT 58.819 40.000 0.00 0.00 38.35 2.17
3844 6672 7.037873 TGCCTCTTTGGTTCTAACTAGGAAATA 60.038 37.037 0.00 0.00 38.35 1.40
3845 6673 7.993758 GCCTCTTTGGTTCTAACTAGGAAATAT 59.006 37.037 0.00 0.00 38.35 1.28
3846 6674 9.331282 CCTCTTTGGTTCTAACTAGGAAATATG 57.669 37.037 0.00 0.00 0.00 1.78
3847 6675 8.732746 TCTTTGGTTCTAACTAGGAAATATGC 57.267 34.615 0.00 0.00 0.00 3.14
3848 6676 7.773690 TCTTTGGTTCTAACTAGGAAATATGCC 59.226 37.037 0.00 0.00 0.00 4.40
3849 6677 5.937111 TGGTTCTAACTAGGAAATATGCCC 58.063 41.667 0.00 0.00 0.00 5.36
3850 6678 4.995487 GGTTCTAACTAGGAAATATGCCCG 59.005 45.833 0.00 0.00 0.00 6.13
3851 6679 4.884668 TCTAACTAGGAAATATGCCCGG 57.115 45.455 0.00 0.00 0.00 5.73
3852 6680 4.228824 TCTAACTAGGAAATATGCCCGGT 58.771 43.478 0.00 0.00 0.00 5.28
3853 6681 2.930826 ACTAGGAAATATGCCCGGTG 57.069 50.000 0.00 0.00 0.00 4.94
3854 6682 1.420138 ACTAGGAAATATGCCCGGTGG 59.580 52.381 0.00 0.00 0.00 4.61
3870 6698 1.607148 GGTGGCACCCGAATAAATAGC 59.393 52.381 26.51 0.00 30.04 2.97
3871 6699 1.607148 GTGGCACCCGAATAAATAGCC 59.393 52.381 6.29 0.00 40.93 3.93
3872 6700 1.244816 GGCACCCGAATAAATAGCCC 58.755 55.000 0.00 0.00 34.71 5.19
3873 6701 1.477923 GGCACCCGAATAAATAGCCCA 60.478 52.381 0.00 0.00 34.71 5.36
3874 6702 1.607148 GCACCCGAATAAATAGCCCAC 59.393 52.381 0.00 0.00 0.00 4.61
3875 6703 2.748465 GCACCCGAATAAATAGCCCACT 60.748 50.000 0.00 0.00 0.00 4.00
3876 6704 3.551846 CACCCGAATAAATAGCCCACTT 58.448 45.455 0.00 0.00 0.00 3.16
3877 6705 3.315191 CACCCGAATAAATAGCCCACTTG 59.685 47.826 0.00 0.00 0.00 3.16
3878 6706 3.053917 ACCCGAATAAATAGCCCACTTGT 60.054 43.478 0.00 0.00 0.00 3.16
3879 6707 3.951680 CCCGAATAAATAGCCCACTTGTT 59.048 43.478 0.00 0.00 0.00 2.83
3880 6708 4.401202 CCCGAATAAATAGCCCACTTGTTT 59.599 41.667 0.00 0.00 0.00 2.83
3881 6709 5.449999 CCCGAATAAATAGCCCACTTGTTTC 60.450 44.000 0.00 0.00 0.00 2.78
3882 6710 5.263185 CGAATAAATAGCCCACTTGTTTCG 58.737 41.667 0.00 0.00 0.00 3.46
3883 6711 5.576447 AATAAATAGCCCACTTGTTTCGG 57.424 39.130 0.00 0.00 0.00 4.30
3884 6712 1.834188 AATAGCCCACTTGTTTCGGG 58.166 50.000 0.00 0.00 43.42 5.14
3887 6715 3.849064 CCCACTTGTTTCGGGCAA 58.151 55.556 0.00 0.00 31.89 4.52
3888 6716 1.659794 CCCACTTGTTTCGGGCAAG 59.340 57.895 11.13 11.13 46.23 4.01
3889 6717 0.821711 CCCACTTGTTTCGGGCAAGA 60.822 55.000 16.95 0.00 44.29 3.02
3890 6718 1.028905 CCACTTGTTTCGGGCAAGAA 58.971 50.000 16.95 0.00 44.29 2.52
3891 6719 1.613437 CCACTTGTTTCGGGCAAGAAT 59.387 47.619 16.95 0.00 44.29 2.40
3892 6720 2.607771 CCACTTGTTTCGGGCAAGAATG 60.608 50.000 16.95 8.74 44.29 2.67
3893 6721 2.293122 CACTTGTTTCGGGCAAGAATGA 59.707 45.455 16.95 0.00 44.29 2.57
3894 6722 2.955660 ACTTGTTTCGGGCAAGAATGAA 59.044 40.909 16.95 0.00 44.29 2.57
3895 6723 3.573967 ACTTGTTTCGGGCAAGAATGAAT 59.426 39.130 16.95 0.00 44.29 2.57
3896 6724 3.574284 TGTTTCGGGCAAGAATGAATG 57.426 42.857 0.00 0.00 0.00 2.67
3897 6725 2.230992 TGTTTCGGGCAAGAATGAATGG 59.769 45.455 0.00 0.00 0.00 3.16
3898 6726 1.473258 TTCGGGCAAGAATGAATGGG 58.527 50.000 0.00 0.00 0.00 4.00
3899 6727 0.623194 TCGGGCAAGAATGAATGGGA 59.377 50.000 0.00 0.00 0.00 4.37
3900 6728 0.740737 CGGGCAAGAATGAATGGGAC 59.259 55.000 0.00 0.00 0.00 4.46
3901 6729 1.683011 CGGGCAAGAATGAATGGGACT 60.683 52.381 0.00 0.00 0.00 3.85
3902 6730 1.753073 GGGCAAGAATGAATGGGACTG 59.247 52.381 0.00 0.00 0.00 3.51
3903 6731 2.621407 GGGCAAGAATGAATGGGACTGA 60.621 50.000 0.00 0.00 0.00 3.41
3904 6732 3.294214 GGCAAGAATGAATGGGACTGAT 58.706 45.455 0.00 0.00 0.00 2.90
3905 6733 3.317430 GGCAAGAATGAATGGGACTGATC 59.683 47.826 0.00 0.00 0.00 2.92
3906 6734 3.317430 GCAAGAATGAATGGGACTGATCC 59.683 47.826 0.00 0.00 45.42 3.36
3916 6744 2.586648 GGACTGATCCCCACTTGTTT 57.413 50.000 0.00 0.00 39.39 2.83
3917 6745 2.437413 GGACTGATCCCCACTTGTTTC 58.563 52.381 0.00 0.00 39.39 2.78
3918 6746 2.076863 GACTGATCCCCACTTGTTTCG 58.923 52.381 0.00 0.00 0.00 3.46
3919 6747 1.271379 ACTGATCCCCACTTGTTTCGG 60.271 52.381 0.00 0.00 0.00 4.30
3920 6748 0.037590 TGATCCCCACTTGTTTCGGG 59.962 55.000 0.00 0.00 39.92 5.14
3921 6749 1.304134 ATCCCCACTTGTTTCGGGC 60.304 57.895 0.00 0.00 38.78 6.13
3922 6750 2.075355 ATCCCCACTTGTTTCGGGCA 62.075 55.000 0.00 0.00 38.78 5.36
3923 6751 1.830408 CCCCACTTGTTTCGGGCAA 60.830 57.895 0.00 0.00 38.78 4.52
3924 6752 1.659794 CCCACTTGTTTCGGGCAAG 59.340 57.895 11.13 11.13 46.23 4.01
3925 6753 0.821711 CCCACTTGTTTCGGGCAAGA 60.822 55.000 16.95 0.00 44.29 3.02
3926 6754 1.028905 CCACTTGTTTCGGGCAAGAA 58.971 50.000 16.95 0.00 44.29 2.52
3927 6755 1.613437 CCACTTGTTTCGGGCAAGAAT 59.387 47.619 16.95 0.00 44.29 2.40
3928 6756 2.607771 CCACTTGTTTCGGGCAAGAATG 60.608 50.000 16.95 8.74 44.29 2.67
3929 6757 2.293122 CACTTGTTTCGGGCAAGAATGA 59.707 45.455 16.95 0.00 44.29 2.57
3930 6758 2.955660 ACTTGTTTCGGGCAAGAATGAA 59.044 40.909 16.95 0.00 44.29 2.57
3931 6759 3.573967 ACTTGTTTCGGGCAAGAATGAAT 59.426 39.130 16.95 0.00 44.29 2.57
3932 6760 3.574284 TGTTTCGGGCAAGAATGAATG 57.426 42.857 0.00 0.00 0.00 2.67
3933 6761 2.230992 TGTTTCGGGCAAGAATGAATGG 59.769 45.455 0.00 0.00 0.00 3.16
3934 6762 1.473258 TTCGGGCAAGAATGAATGGG 58.527 50.000 0.00 0.00 0.00 4.00
3935 6763 0.623194 TCGGGCAAGAATGAATGGGA 59.377 50.000 0.00 0.00 0.00 4.37
3936 6764 0.740737 CGGGCAAGAATGAATGGGAC 59.259 55.000 0.00 0.00 0.00 4.46
3937 6765 1.683011 CGGGCAAGAATGAATGGGACT 60.683 52.381 0.00 0.00 0.00 3.85
3938 6766 1.753073 GGGCAAGAATGAATGGGACTG 59.247 52.381 0.00 0.00 0.00 3.51
3939 6767 2.621407 GGGCAAGAATGAATGGGACTGA 60.621 50.000 0.00 0.00 0.00 3.41
3940 6768 3.294214 GGCAAGAATGAATGGGACTGAT 58.706 45.455 0.00 0.00 0.00 2.90
3941 6769 3.317430 GGCAAGAATGAATGGGACTGATC 59.683 47.826 0.00 0.00 0.00 2.92
3942 6770 3.003068 GCAAGAATGAATGGGACTGATCG 59.997 47.826 0.00 0.00 0.00 3.69
3943 6771 4.445453 CAAGAATGAATGGGACTGATCGA 58.555 43.478 0.00 0.00 0.00 3.59
3944 6772 4.065321 AGAATGAATGGGACTGATCGAC 57.935 45.455 0.00 0.00 0.00 4.20
3945 6773 3.708631 AGAATGAATGGGACTGATCGACT 59.291 43.478 0.00 0.00 0.00 4.18
3946 6774 3.742433 ATGAATGGGACTGATCGACTC 57.258 47.619 0.00 0.00 0.00 3.36
3947 6775 1.405463 TGAATGGGACTGATCGACTCG 59.595 52.381 0.00 0.00 0.00 4.18
3948 6776 1.676529 GAATGGGACTGATCGACTCGA 59.323 52.381 3.06 3.06 41.13 4.04
3949 6777 1.313772 ATGGGACTGATCGACTCGAG 58.686 55.000 11.84 11.84 39.91 4.04
3950 6778 0.035343 TGGGACTGATCGACTCGAGT 60.035 55.000 20.18 20.18 39.91 4.18
3951 6779 1.096416 GGGACTGATCGACTCGAGTT 58.904 55.000 21.08 3.21 39.91 3.01
3952 6780 2.286872 GGGACTGATCGACTCGAGTTA 58.713 52.381 21.08 11.76 39.91 2.24
3953 6781 2.031930 GGGACTGATCGACTCGAGTTAC 59.968 54.545 21.08 6.87 39.91 2.50
3954 6782 2.031930 GGACTGATCGACTCGAGTTACC 59.968 54.545 21.08 6.07 39.91 2.85
3955 6783 1.664659 ACTGATCGACTCGAGTTACCG 59.335 52.381 21.08 18.45 39.91 4.02
3956 6784 1.931841 CTGATCGACTCGAGTTACCGA 59.068 52.381 24.35 24.35 39.91 4.69
3963 6791 3.639099 TCGAGTTACCGAGTGACCT 57.361 52.632 0.00 0.00 34.19 3.85
3964 6792 1.901591 TCGAGTTACCGAGTGACCTT 58.098 50.000 0.00 0.00 34.19 3.50
3965 6793 1.808945 TCGAGTTACCGAGTGACCTTC 59.191 52.381 0.00 0.00 34.19 3.46
3966 6794 1.538512 CGAGTTACCGAGTGACCTTCA 59.461 52.381 0.00 0.00 0.00 3.02
3977 6805 2.936316 GTGACCTTCACTCTTCGACTC 58.064 52.381 0.00 0.00 43.73 3.36
3978 6806 1.535896 TGACCTTCACTCTTCGACTCG 59.464 52.381 0.00 0.00 0.00 4.18
3979 6807 1.805345 GACCTTCACTCTTCGACTCGA 59.195 52.381 0.00 0.00 0.00 4.04
3980 6808 2.225963 GACCTTCACTCTTCGACTCGAA 59.774 50.000 13.14 13.14 43.75 3.71
3981 6809 2.621998 ACCTTCACTCTTCGACTCGAAA 59.378 45.455 14.57 5.81 45.23 3.46
3982 6810 3.067742 ACCTTCACTCTTCGACTCGAAAA 59.932 43.478 14.57 1.12 45.23 2.29
3983 6811 3.670991 CCTTCACTCTTCGACTCGAAAAG 59.329 47.826 14.57 13.30 45.23 2.27
3984 6812 3.984508 TCACTCTTCGACTCGAAAAGT 57.015 42.857 13.32 13.32 46.06 2.66
3985 6813 4.303086 TCACTCTTCGACTCGAAAAGTT 57.697 40.909 15.92 1.65 43.27 2.66
3986 6814 5.428496 TCACTCTTCGACTCGAAAAGTTA 57.572 39.130 15.92 7.32 43.27 2.24
3987 6815 5.210715 TCACTCTTCGACTCGAAAAGTTAC 58.789 41.667 15.92 0.00 43.27 2.50
3988 6816 4.382160 CACTCTTCGACTCGAAAAGTTACC 59.618 45.833 15.92 0.00 43.27 2.85
3989 6817 3.558505 TCTTCGACTCGAAAAGTTACCG 58.441 45.455 14.57 1.59 45.23 4.02
3990 6818 3.250762 TCTTCGACTCGAAAAGTTACCGA 59.749 43.478 14.57 3.81 45.23 4.69
3991 6819 8.684311 ACTCTTCGACTCGAAAAGTTACCGAG 62.684 46.154 13.32 19.17 43.27 4.63
3996 6824 2.985139 CTCGAAAAGTTACCGAGTGACC 59.015 50.000 14.91 0.00 43.20 4.02
3997 6825 2.624838 TCGAAAAGTTACCGAGTGACCT 59.375 45.455 0.00 0.00 0.00 3.85
3998 6826 2.985139 CGAAAAGTTACCGAGTGACCTC 59.015 50.000 0.00 0.00 0.00 3.85
3999 6827 3.324117 GAAAAGTTACCGAGTGACCTCC 58.676 50.000 0.00 0.00 33.93 4.30
4000 6828 2.005370 AAGTTACCGAGTGACCTCCA 57.995 50.000 0.00 0.00 33.93 3.86
4001 6829 1.254954 AGTTACCGAGTGACCTCCAC 58.745 55.000 0.00 0.00 46.03 4.02
4009 6837 3.796667 GTGACCTCCACTCTTCGAC 57.203 57.895 0.00 0.00 42.44 4.20
4010 6838 1.249407 GTGACCTCCACTCTTCGACT 58.751 55.000 0.00 0.00 42.44 4.18
4011 6839 1.200484 GTGACCTCCACTCTTCGACTC 59.800 57.143 0.00 0.00 42.44 3.36
4012 6840 0.448593 GACCTCCACTCTTCGACTCG 59.551 60.000 0.00 0.00 0.00 4.18
4013 6841 0.036448 ACCTCCACTCTTCGACTCGA 59.964 55.000 0.00 0.00 0.00 4.04
4014 6842 0.730265 CCTCCACTCTTCGACTCGAG 59.270 60.000 11.84 11.84 37.14 4.04
4015 6843 0.098025 CTCCACTCTTCGACTCGAGC 59.902 60.000 13.61 4.47 37.14 5.03
4016 6844 0.321741 TCCACTCTTCGACTCGAGCT 60.322 55.000 13.61 0.00 37.14 4.09
4017 6845 0.523966 CCACTCTTCGACTCGAGCTT 59.476 55.000 13.61 0.00 37.14 3.74
4018 6846 1.068194 CCACTCTTCGACTCGAGCTTT 60.068 52.381 13.61 0.00 37.14 3.51
4019 6847 2.246789 CACTCTTCGACTCGAGCTTTC 58.753 52.381 13.61 1.43 37.14 2.62
4020 6848 1.135916 ACTCTTCGACTCGAGCTTTCG 60.136 52.381 13.61 14.78 37.14 3.46
4021 6849 0.454620 TCTTCGACTCGAGCTTTCGC 60.455 55.000 13.61 0.00 37.14 4.70
4032 6860 2.695613 AGCTTTCGCTTCTGCTTTTC 57.304 45.000 0.00 0.00 46.47 2.29
4033 6861 2.225467 AGCTTTCGCTTCTGCTTTTCT 58.775 42.857 0.00 0.00 46.47 2.52
4034 6862 2.225255 AGCTTTCGCTTCTGCTTTTCTC 59.775 45.455 0.00 0.00 46.47 2.87
4035 6863 2.225255 GCTTTCGCTTCTGCTTTTCTCT 59.775 45.455 0.00 0.00 36.97 3.10
4036 6864 3.304324 GCTTTCGCTTCTGCTTTTCTCTT 60.304 43.478 0.00 0.00 36.97 2.85
4037 6865 3.885484 TTCGCTTCTGCTTTTCTCTTG 57.115 42.857 0.00 0.00 36.97 3.02
4038 6866 2.838736 TCGCTTCTGCTTTTCTCTTGT 58.161 42.857 0.00 0.00 36.97 3.16
4039 6867 3.206150 TCGCTTCTGCTTTTCTCTTGTT 58.794 40.909 0.00 0.00 36.97 2.83
4040 6868 3.248602 TCGCTTCTGCTTTTCTCTTGTTC 59.751 43.478 0.00 0.00 36.97 3.18
4041 6869 3.249559 CGCTTCTGCTTTTCTCTTGTTCT 59.750 43.478 0.00 0.00 36.97 3.01
4042 6870 4.535116 GCTTCTGCTTTTCTCTTGTTCTG 58.465 43.478 0.00 0.00 36.03 3.02
4043 6871 4.274459 GCTTCTGCTTTTCTCTTGTTCTGA 59.726 41.667 0.00 0.00 36.03 3.27
4044 6872 5.048852 GCTTCTGCTTTTCTCTTGTTCTGAT 60.049 40.000 0.00 0.00 36.03 2.90
4045 6873 6.514705 GCTTCTGCTTTTCTCTTGTTCTGATT 60.515 38.462 0.00 0.00 36.03 2.57
4046 6874 6.949352 TCTGCTTTTCTCTTGTTCTGATTT 57.051 33.333 0.00 0.00 0.00 2.17
4047 6875 8.450578 TTCTGCTTTTCTCTTGTTCTGATTTA 57.549 30.769 0.00 0.00 0.00 1.40
4048 6876 8.627208 TCTGCTTTTCTCTTGTTCTGATTTAT 57.373 30.769 0.00 0.00 0.00 1.40
4049 6877 9.071276 TCTGCTTTTCTCTTGTTCTGATTTATT 57.929 29.630 0.00 0.00 0.00 1.40
4052 6880 9.283420 GCTTTTCTCTTGTTCTGATTTATTAGC 57.717 33.333 0.00 0.00 0.00 3.09
4056 6884 7.978982 TCTCTTGTTCTGATTTATTAGCTTGC 58.021 34.615 0.00 0.00 0.00 4.01
4057 6885 7.607607 TCTCTTGTTCTGATTTATTAGCTTGCA 59.392 33.333 0.00 0.00 0.00 4.08
4058 6886 8.109705 TCTTGTTCTGATTTATTAGCTTGCAA 57.890 30.769 0.00 0.00 0.00 4.08
4059 6887 8.575589 TCTTGTTCTGATTTATTAGCTTGCAAA 58.424 29.630 0.00 0.00 0.00 3.68
4060 6888 9.195411 CTTGTTCTGATTTATTAGCTTGCAAAA 57.805 29.630 0.00 0.00 0.00 2.44
4061 6889 9.539825 TTGTTCTGATTTATTAGCTTGCAAAAA 57.460 25.926 0.00 0.00 0.00 1.94
4089 6917 2.122547 ACACCTTCCCACGGGTCT 60.123 61.111 1.07 0.00 36.47 3.85
4100 6928 2.352032 ACGGGTCTACAGCTGCCTC 61.352 63.158 15.27 1.81 0.00 4.70
4228 7172 8.956533 ATTTCTATCTTCTTCTGCCTAACTTC 57.043 34.615 0.00 0.00 0.00 3.01
4306 7287 9.471702 ACTGGATGAGTTGAATTATCAGAAAAT 57.528 29.630 0.00 0.00 36.78 1.82
4364 7345 7.330946 CGTTGTTTATTCTCAACTCAGATACCA 59.669 37.037 0.00 0.00 40.88 3.25
4386 7367 5.973565 CCAAAACAGCAAAACTCTACAGAAG 59.026 40.000 0.00 0.00 0.00 2.85
4394 7375 8.226448 CAGCAAAACTCTACAGAAGAATGTAAG 58.774 37.037 0.00 0.00 35.32 2.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.658799 CCTGAGATCAAAACTATGTTAGAAAGA 57.341 33.333 0.00 0.00 0.00 2.52
5 6 9.442047 ACCTGAGATCAAAACTATGTTAGAAAG 57.558 33.333 0.00 0.00 0.00 2.62
6 7 9.793259 AACCTGAGATCAAAACTATGTTAGAAA 57.207 29.630 0.00 0.00 0.00 2.52
7 8 9.793259 AAACCTGAGATCAAAACTATGTTAGAA 57.207 29.630 0.00 0.00 0.00 2.10
11 12 9.965902 ATCTAAACCTGAGATCAAAACTATGTT 57.034 29.630 0.00 0.00 0.00 2.71
12 13 9.606631 GATCTAAACCTGAGATCAAAACTATGT 57.393 33.333 7.59 0.00 45.84 2.29
22 23 9.660180 AGTTAGTTTTGATCTAAACCTGAGATC 57.340 33.333 23.39 5.82 46.45 2.75
24 25 9.490379 GAAGTTAGTTTTGATCTAAACCTGAGA 57.510 33.333 23.39 7.69 38.49 3.27
25 26 9.273016 TGAAGTTAGTTTTGATCTAAACCTGAG 57.727 33.333 23.39 0.00 38.49 3.35
26 27 9.052759 GTGAAGTTAGTTTTGATCTAAACCTGA 57.947 33.333 23.39 10.87 38.49 3.86
27 28 8.836413 TGTGAAGTTAGTTTTGATCTAAACCTG 58.164 33.333 23.39 0.00 38.49 4.00
28 29 8.974060 TGTGAAGTTAGTTTTGATCTAAACCT 57.026 30.769 23.39 13.92 38.49 3.50
55 56 8.884726 GTGAAGTTTAATAAAACCCTGCAAAAA 58.115 29.630 0.00 0.00 45.11 1.94
56 57 8.041323 TGTGAAGTTTAATAAAACCCTGCAAAA 58.959 29.630 0.00 0.00 45.11 2.44
57 58 7.556844 TGTGAAGTTTAATAAAACCCTGCAAA 58.443 30.769 0.00 0.00 45.11 3.68
58 59 7.113658 TGTGAAGTTTAATAAAACCCTGCAA 57.886 32.000 0.00 0.00 45.11 4.08
59 60 6.716934 TGTGAAGTTTAATAAAACCCTGCA 57.283 33.333 0.00 0.00 45.11 4.41
60 61 9.869757 AATATGTGAAGTTTAATAAAACCCTGC 57.130 29.630 0.00 0.00 45.11 4.85
112 113 7.441836 CATTTTCTTAACTTAGTTTTGGGCCT 58.558 34.615 4.53 0.00 0.00 5.19
142 143 5.840715 TCTAGATGAATCACATGAGCACTC 58.159 41.667 0.00 0.00 39.56 3.51
163 1635 5.535030 TGTGTTCGTGTGGCTATATAGATCT 59.465 40.000 14.16 0.00 0.00 2.75
164 1636 5.629849 GTGTGTTCGTGTGGCTATATAGATC 59.370 44.000 14.16 5.40 0.00 2.75
165 1637 5.529791 GTGTGTTCGTGTGGCTATATAGAT 58.470 41.667 14.16 0.00 0.00 1.98
166 1638 4.496840 CGTGTGTTCGTGTGGCTATATAGA 60.497 45.833 14.16 0.00 0.00 1.98
167 1639 3.729217 CGTGTGTTCGTGTGGCTATATAG 59.271 47.826 5.30 5.30 0.00 1.31
168 1640 3.377798 TCGTGTGTTCGTGTGGCTATATA 59.622 43.478 0.00 0.00 0.00 0.86
169 1641 2.164827 TCGTGTGTTCGTGTGGCTATAT 59.835 45.455 0.00 0.00 0.00 0.86
173 1645 1.591594 CTCGTGTGTTCGTGTGGCT 60.592 57.895 0.00 0.00 0.00 4.75
201 1673 4.141158 ACATGGGAGAAGAAACTTGAAGGT 60.141 41.667 0.00 0.00 0.00 3.50
216 1688 5.603170 AAGGATGCATTTAAACATGGGAG 57.397 39.130 0.00 0.00 0.00 4.30
238 1710 5.053145 AGGATGCATTTAAACACGCAAAAA 58.947 33.333 0.00 0.00 38.01 1.94
239 1711 4.626042 AGGATGCATTTAAACACGCAAAA 58.374 34.783 0.00 0.00 38.01 2.44
240 1712 4.250116 AGGATGCATTTAAACACGCAAA 57.750 36.364 0.00 0.00 38.01 3.68
241 1713 3.932545 AGGATGCATTTAAACACGCAA 57.067 38.095 0.00 0.00 38.01 4.85
242 1714 3.005261 ACAAGGATGCATTTAAACACGCA 59.995 39.130 0.00 10.24 39.01 5.24
243 1715 3.364621 CACAAGGATGCATTTAAACACGC 59.635 43.478 0.00 0.00 0.00 5.34
301 1774 9.701098 ATTTAGACATACGTAAACAGTTCAGAA 57.299 29.630 0.00 0.00 0.00 3.02
302 1775 9.701098 AATTTAGACATACGTAAACAGTTCAGA 57.299 29.630 0.00 0.00 0.00 3.27
309 1782 9.478768 TCACAGAAATTTAGACATACGTAAACA 57.521 29.630 0.00 0.00 0.00 2.83
314 1787 8.827177 TTCTTCACAGAAATTTAGACATACGT 57.173 30.769 0.00 0.00 35.99 3.57
321 1797 9.793259 ACCTGTTATTCTTCACAGAAATTTAGA 57.207 29.630 0.79 0.00 42.53 2.10
330 1806 6.344500 AGCATCTACCTGTTATTCTTCACAG 58.656 40.000 0.00 0.00 40.23 3.66
331 1807 6.299805 AGCATCTACCTGTTATTCTTCACA 57.700 37.500 0.00 0.00 0.00 3.58
332 1808 5.755861 GGAGCATCTACCTGTTATTCTTCAC 59.244 44.000 0.00 0.00 33.73 3.18
346 1822 7.820648 TCAGAAAATCTTTTTGGAGCATCTAC 58.179 34.615 0.00 0.00 33.73 2.59
425 1917 4.345859 AGAAATGACGTTTGTGGAGGTA 57.654 40.909 0.00 0.00 0.00 3.08
462 1954 3.690422 TGTTGCTTAGTTTTTGTCAGCG 58.310 40.909 0.00 0.00 32.85 5.18
524 3231 9.232473 GCTCAATATTAAACTAGGGGGAAATAG 57.768 37.037 0.00 0.00 0.00 1.73
525 3232 8.729047 TGCTCAATATTAAACTAGGGGGAAATA 58.271 33.333 0.00 0.00 0.00 1.40
526 3233 7.591821 TGCTCAATATTAAACTAGGGGGAAAT 58.408 34.615 0.00 0.00 0.00 2.17
527 3234 6.975949 TGCTCAATATTAAACTAGGGGGAAA 58.024 36.000 0.00 0.00 0.00 3.13
528 3235 6.584471 TGCTCAATATTAAACTAGGGGGAA 57.416 37.500 0.00 0.00 0.00 3.97
529 3236 6.780198 ATGCTCAATATTAAACTAGGGGGA 57.220 37.500 0.00 0.00 0.00 4.81
530 3237 7.505585 TCAAATGCTCAATATTAAACTAGGGGG 59.494 37.037 0.00 0.00 0.00 5.40
531 3238 8.463930 TCAAATGCTCAATATTAAACTAGGGG 57.536 34.615 0.00 0.00 0.00 4.79
532 3239 8.571336 CCTCAAATGCTCAATATTAAACTAGGG 58.429 37.037 0.00 0.00 0.00 3.53
533 3240 9.125026 ACCTCAAATGCTCAATATTAAACTAGG 57.875 33.333 0.00 0.00 0.00 3.02
535 3242 8.826710 CGACCTCAAATGCTCAATATTAAACTA 58.173 33.333 0.00 0.00 0.00 2.24
536 3243 7.552687 TCGACCTCAAATGCTCAATATTAAACT 59.447 33.333 0.00 0.00 0.00 2.66
537 3244 7.693952 TCGACCTCAAATGCTCAATATTAAAC 58.306 34.615 0.00 0.00 0.00 2.01
538 3245 7.857734 TCGACCTCAAATGCTCAATATTAAA 57.142 32.000 0.00 0.00 0.00 1.52
542 3249 6.949352 ATTTCGACCTCAAATGCTCAATAT 57.051 33.333 0.00 0.00 0.00 1.28
717 3437 2.791927 CGGCTCACGTGAGATCGA 59.208 61.111 42.03 10.97 44.74 3.59
790 3510 2.486203 AGAGGATATAGAGAACTGCGCG 59.514 50.000 0.00 0.00 0.00 6.86
791 3511 3.756434 AGAGAGGATATAGAGAACTGCGC 59.244 47.826 0.00 0.00 0.00 6.09
831 3551 1.878522 GGCGTACGGAGCATGACAG 60.879 63.158 18.39 0.00 36.08 3.51
890 3619 0.885196 GGTCCGCTTAAAATGGTGCA 59.115 50.000 0.00 0.00 0.00 4.57
947 3676 0.546122 TGGTGAGTGAGTGGCTTTGT 59.454 50.000 0.00 0.00 0.00 2.83
1002 3731 2.881352 GTGCGTGCTAGCTCGGAC 60.881 66.667 35.86 35.86 43.94 4.79
1033 3762 1.463553 TTGTCAGTGGCTCAGCGAGA 61.464 55.000 9.32 0.00 0.00 4.04
1056 3785 3.936204 CTGCTCTGCTGCTGCGACT 62.936 63.158 11.21 0.00 43.34 4.18
1087 3816 2.586792 CCTTCCTCCCGCTTCCAG 59.413 66.667 0.00 0.00 0.00 3.86
1089 3818 4.840005 CGCCTTCCTCCCGCTTCC 62.840 72.222 0.00 0.00 0.00 3.46
1189 3918 1.079127 CTGGTTGTACCGCTCCTGG 60.079 63.158 0.00 0.00 42.58 4.45
1418 4153 3.394836 GCCCTCCTCCTGCTTCGT 61.395 66.667 0.00 0.00 0.00 3.85
1500 4235 4.988598 CCTGCTTGTCGTGGCCGT 62.989 66.667 0.00 0.00 35.01 5.68
1735 4482 4.514577 CCCGTGATTCCGAGCGCT 62.515 66.667 11.27 11.27 0.00 5.92
1744 4491 1.420138 ACAGTTTGGTCTCCCGTGATT 59.580 47.619 0.00 0.00 0.00 2.57
1825 4572 1.746615 CTGATCCTTGTGGCCCGTG 60.747 63.158 0.00 0.00 0.00 4.94
1840 4587 1.536073 CCGTGTCTGAGCCCTTCTGA 61.536 60.000 0.00 0.00 0.00 3.27
2002 4749 1.968017 CTCCTTCGCCTTTGCTGCA 60.968 57.895 0.00 0.00 34.43 4.41
2125 4872 1.511305 CTTCTCGGCGGCAGTCTTA 59.489 57.895 10.53 0.00 0.00 2.10
2595 5354 2.644676 TGTTCATGGTTTGTTCGGTCA 58.355 42.857 0.00 0.00 0.00 4.02
2597 5356 2.360801 CCTTGTTCATGGTTTGTTCGGT 59.639 45.455 0.00 0.00 0.00 4.69
2602 5361 1.786937 TGGCCTTGTTCATGGTTTGT 58.213 45.000 3.32 0.00 0.00 2.83
2612 5371 0.818040 GTCGTGTCCTTGGCCTTGTT 60.818 55.000 3.32 0.00 0.00 2.83
2665 5478 1.208358 CGAGTCCTTGACGTACGCA 59.792 57.895 16.72 11.71 37.67 5.24
2672 5485 1.726853 CCAATCACCGAGTCCTTGAC 58.273 55.000 0.00 0.00 0.00 3.18
2731 5544 1.047002 CCCTGCCCATTGTTTGTTCA 58.953 50.000 0.00 0.00 0.00 3.18
2734 5547 2.216331 GGCCCTGCCCATTGTTTGT 61.216 57.895 0.00 0.00 44.06 2.83
2758 5571 4.208686 CCTGCGTCTCCGGTAGCC 62.209 72.222 0.00 0.00 33.68 3.93
2761 5574 0.106569 TATTCCCTGCGTCTCCGGTA 60.107 55.000 0.00 0.00 33.68 4.02
2771 5584 1.759459 CTCCCGGTCCTATTCCCTGC 61.759 65.000 0.00 0.00 0.00 4.85
2773 5586 1.459730 GCTCCCGGTCCTATTCCCT 60.460 63.158 0.00 0.00 0.00 4.20
2956 5769 1.990160 TTTTGCCGGTCTCCACCACT 61.990 55.000 1.90 0.00 44.02 4.00
2958 5771 1.228124 CTTTTGCCGGTCTCCACCA 60.228 57.895 1.90 0.00 44.02 4.17
3001 5814 3.305177 TACCTTCGCCTTGGCCGTC 62.305 63.158 6.02 0.00 0.00 4.79
3002 5815 3.315949 TACCTTCGCCTTGGCCGT 61.316 61.111 6.02 0.47 0.00 5.68
3005 5818 2.047560 ACGTACCTTCGCCTTGGC 60.048 61.111 0.75 0.75 0.00 4.52
3037 5850 4.083749 CCGTAGAATCAGATACTCGTGGAG 60.084 50.000 0.00 0.00 35.52 3.86
3038 5851 3.813724 CCGTAGAATCAGATACTCGTGGA 59.186 47.826 0.00 0.00 0.00 4.02
3041 5854 6.018098 CACTTACCGTAGAATCAGATACTCGT 60.018 42.308 0.00 0.00 0.00 4.18
3043 5856 7.012138 TCACACTTACCGTAGAATCAGATACTC 59.988 40.741 0.00 0.00 0.00 2.59
3054 5867 5.195185 TGGATACATCACACTTACCGTAGA 58.805 41.667 0.00 0.00 46.17 2.59
3095 5916 2.042259 CCCTGCATGCACACGTCAT 61.042 57.895 18.46 0.00 0.00 3.06
3123 5944 2.248248 TCCACGATCTTGGTGTCTTCT 58.752 47.619 17.16 0.00 37.93 2.85
3192 6013 1.299926 CTGCGCTATCCCGTACACC 60.300 63.158 9.73 0.00 0.00 4.16
3196 6017 2.415843 GTGCTGCGCTATCCCGTA 59.584 61.111 9.73 0.00 0.00 4.02
3197 6018 3.770040 TGTGCTGCGCTATCCCGT 61.770 61.111 14.92 0.00 0.00 5.28
3202 6023 1.746615 CCTTGGTGTGCTGCGCTAT 60.747 57.895 14.92 0.00 0.00 2.97
3298 6119 2.354203 GGTCTGCTCACTCGGATTTCTT 60.354 50.000 0.00 0.00 0.00 2.52
3318 6139 3.101428 GTGCGACGTACGTGTGGG 61.101 66.667 28.16 12.87 44.60 4.61
3335 6156 8.550376 CAACCAACATTCTCTTAACATTTTTGG 58.450 33.333 0.00 0.00 36.62 3.28
3391 6212 8.807667 ATTACTACAACTATATACAACACCGC 57.192 34.615 0.00 0.00 0.00 5.68
3481 6302 5.468592 CAGCAGACATCTGGACATATAGTC 58.531 45.833 10.81 0.00 46.83 2.59
3482 6303 4.262377 GCAGCAGACATCTGGACATATAGT 60.262 45.833 10.81 0.00 43.94 2.12
3483 6304 4.021280 AGCAGCAGACATCTGGACATATAG 60.021 45.833 10.81 0.00 43.94 1.31
3484 6305 3.899980 AGCAGCAGACATCTGGACATATA 59.100 43.478 10.81 0.00 43.94 0.86
3485 6306 2.704596 AGCAGCAGACATCTGGACATAT 59.295 45.455 10.81 0.00 43.94 1.78
3494 6315 3.312973 ACGTACTAGTAGCAGCAGACATC 59.687 47.826 1.87 0.00 0.00 3.06
3541 6367 6.423001 GCCATTTCATTCCATAAGATTTGAGC 59.577 38.462 0.00 0.00 0.00 4.26
3580 6406 3.257375 TCACTTGGCTAAGTACACGATGT 59.743 43.478 15.73 0.00 45.12 3.06
3587 6413 5.402997 ACCTAGTTCACTTGGCTAAGTAC 57.597 43.478 15.73 11.16 45.12 2.73
3590 6416 6.879458 ACATTTACCTAGTTCACTTGGCTAAG 59.121 38.462 8.47 8.47 41.60 2.18
3608 6434 8.492748 TCACTTCAGATTTACACGAACATTTAC 58.507 33.333 0.00 0.00 0.00 2.01
3683 6509 4.092116 GCTCTTAAGCCCAAGGTGATAT 57.908 45.455 0.00 0.00 43.10 1.63
3721 6547 2.440539 ACTGCTCGGAACTGTTACTG 57.559 50.000 0.61 0.00 0.00 2.74
3722 6548 3.470645 AAACTGCTCGGAACTGTTACT 57.529 42.857 0.61 0.00 0.00 2.24
3723 6549 4.375706 CGTAAAACTGCTCGGAACTGTTAC 60.376 45.833 4.44 0.00 0.00 2.50
3725 6551 2.542595 CGTAAAACTGCTCGGAACTGTT 59.457 45.455 0.00 0.00 0.00 3.16
3763 6591 1.865865 ACGCACGGCATATTTCCTAG 58.134 50.000 0.00 0.00 0.00 3.02
3764 6592 1.937223 CAACGCACGGCATATTTCCTA 59.063 47.619 0.00 0.00 0.00 2.94
3765 6593 0.732571 CAACGCACGGCATATTTCCT 59.267 50.000 0.00 0.00 0.00 3.36
3766 6594 0.865639 GCAACGCACGGCATATTTCC 60.866 55.000 0.00 0.00 0.00 3.13
3767 6595 0.179176 TGCAACGCACGGCATATTTC 60.179 50.000 0.00 0.00 34.58 2.17
3768 6596 0.242286 TTGCAACGCACGGCATATTT 59.758 45.000 0.00 0.00 38.71 1.40
3769 6597 0.242286 TTTGCAACGCACGGCATATT 59.758 45.000 0.00 0.00 38.71 1.28
3770 6598 0.242286 TTTTGCAACGCACGGCATAT 59.758 45.000 0.00 0.00 38.71 1.78
3771 6599 0.030773 TTTTTGCAACGCACGGCATA 59.969 45.000 0.00 0.00 38.71 3.14
3772 6600 1.227089 TTTTTGCAACGCACGGCAT 60.227 47.368 0.00 0.00 38.71 4.40
3773 6601 2.181777 TTTTTGCAACGCACGGCA 59.818 50.000 0.00 0.00 38.71 5.69
3789 6617 4.141251 AGACCCAGGTGTGTGATACTTTTT 60.141 41.667 0.00 0.00 0.00 1.94
3790 6618 3.394606 AGACCCAGGTGTGTGATACTTTT 59.605 43.478 0.00 0.00 0.00 2.27
3791 6619 2.979678 AGACCCAGGTGTGTGATACTTT 59.020 45.455 0.00 0.00 0.00 2.66
3792 6620 2.621070 AGACCCAGGTGTGTGATACTT 58.379 47.619 0.00 0.00 0.00 2.24
3793 6621 2.327325 AGACCCAGGTGTGTGATACT 57.673 50.000 0.00 0.00 0.00 2.12
3794 6622 2.829720 TGTAGACCCAGGTGTGTGATAC 59.170 50.000 0.00 0.00 0.00 2.24
3795 6623 3.096852 CTGTAGACCCAGGTGTGTGATA 58.903 50.000 0.00 0.00 0.00 2.15
3796 6624 1.902508 CTGTAGACCCAGGTGTGTGAT 59.097 52.381 0.00 0.00 0.00 3.06
3797 6625 1.338107 CTGTAGACCCAGGTGTGTGA 58.662 55.000 0.00 0.00 0.00 3.58
3798 6626 0.320771 GCTGTAGACCCAGGTGTGTG 60.321 60.000 0.00 0.00 32.92 3.82
3799 6627 0.471971 AGCTGTAGACCCAGGTGTGT 60.472 55.000 0.00 0.00 41.38 3.72
3800 6628 2.366469 AGCTGTAGACCCAGGTGTG 58.634 57.895 0.00 0.00 41.38 3.82
3801 6629 4.977810 AGCTGTAGACCCAGGTGT 57.022 55.556 0.00 0.00 41.38 4.16
3803 6631 2.294078 GGCAGCTGTAGACCCAGGT 61.294 63.158 16.64 0.00 43.60 4.00
3804 6632 1.965754 GAGGCAGCTGTAGACCCAGG 61.966 65.000 16.64 0.00 32.92 4.45
3805 6633 0.975040 AGAGGCAGCTGTAGACCCAG 60.975 60.000 16.64 0.00 35.49 4.45
3806 6634 0.545309 AAGAGGCAGCTGTAGACCCA 60.545 55.000 16.64 0.00 0.00 4.51
3807 6635 0.615850 AAAGAGGCAGCTGTAGACCC 59.384 55.000 16.64 7.43 0.00 4.46
3808 6636 1.677217 CCAAAGAGGCAGCTGTAGACC 60.677 57.143 16.64 7.84 0.00 3.85
3809 6637 1.002544 ACCAAAGAGGCAGCTGTAGAC 59.997 52.381 16.64 3.69 43.14 2.59
3810 6638 1.352083 ACCAAAGAGGCAGCTGTAGA 58.648 50.000 16.64 0.00 43.14 2.59
3811 6639 2.079925 GAACCAAAGAGGCAGCTGTAG 58.920 52.381 16.64 0.00 43.14 2.74
3812 6640 1.699634 AGAACCAAAGAGGCAGCTGTA 59.300 47.619 16.64 0.00 43.14 2.74
3813 6641 0.475906 AGAACCAAAGAGGCAGCTGT 59.524 50.000 16.64 0.00 43.14 4.40
3814 6642 2.479566 TAGAACCAAAGAGGCAGCTG 57.520 50.000 10.11 10.11 43.14 4.24
3815 6643 2.373502 AGTTAGAACCAAAGAGGCAGCT 59.626 45.455 0.00 0.00 43.14 4.24
3816 6644 2.784347 AGTTAGAACCAAAGAGGCAGC 58.216 47.619 0.00 0.00 43.14 5.25
3817 6645 4.223032 TCCTAGTTAGAACCAAAGAGGCAG 59.777 45.833 0.00 0.00 43.14 4.85
3818 6646 4.164981 TCCTAGTTAGAACCAAAGAGGCA 58.835 43.478 0.00 0.00 43.14 4.75
3819 6647 4.820894 TCCTAGTTAGAACCAAAGAGGC 57.179 45.455 0.00 0.00 43.14 4.70
3820 6648 9.331282 CATATTTCCTAGTTAGAACCAAAGAGG 57.669 37.037 0.00 0.00 45.67 3.69
3821 6649 8.831550 GCATATTTCCTAGTTAGAACCAAAGAG 58.168 37.037 0.00 0.00 0.00 2.85
3822 6650 7.773690 GGCATATTTCCTAGTTAGAACCAAAGA 59.226 37.037 0.00 0.00 0.00 2.52
3823 6651 7.013369 GGGCATATTTCCTAGTTAGAACCAAAG 59.987 40.741 0.00 0.00 0.00 2.77
3824 6652 6.831868 GGGCATATTTCCTAGTTAGAACCAAA 59.168 38.462 0.00 0.00 0.00 3.28
3825 6653 6.362248 GGGCATATTTCCTAGTTAGAACCAA 58.638 40.000 0.00 0.00 0.00 3.67
3826 6654 5.454187 CGGGCATATTTCCTAGTTAGAACCA 60.454 44.000 0.00 0.00 0.00 3.67
3827 6655 4.995487 CGGGCATATTTCCTAGTTAGAACC 59.005 45.833 0.00 0.00 0.00 3.62
3828 6656 4.995487 CCGGGCATATTTCCTAGTTAGAAC 59.005 45.833 0.00 0.00 0.00 3.01
3829 6657 4.657039 ACCGGGCATATTTCCTAGTTAGAA 59.343 41.667 6.32 0.00 0.00 2.10
3830 6658 4.039973 CACCGGGCATATTTCCTAGTTAGA 59.960 45.833 6.32 0.00 0.00 2.10
3831 6659 4.315803 CACCGGGCATATTTCCTAGTTAG 58.684 47.826 6.32 0.00 0.00 2.34
3832 6660 3.071892 CCACCGGGCATATTTCCTAGTTA 59.928 47.826 6.32 0.00 0.00 2.24
3833 6661 2.158667 CCACCGGGCATATTTCCTAGTT 60.159 50.000 6.32 0.00 0.00 2.24
3834 6662 1.420138 CCACCGGGCATATTTCCTAGT 59.580 52.381 6.32 0.00 0.00 2.57
3835 6663 2.185004 CCACCGGGCATATTTCCTAG 57.815 55.000 6.32 0.00 0.00 3.02
3850 6678 1.607148 GCTATTTATTCGGGTGCCACC 59.393 52.381 4.93 4.93 37.60 4.61
3851 6679 1.607148 GGCTATTTATTCGGGTGCCAC 59.393 52.381 0.00 0.00 38.79 5.01
3852 6680 1.477923 GGGCTATTTATTCGGGTGCCA 60.478 52.381 0.00 0.00 40.51 4.92
3853 6681 1.244816 GGGCTATTTATTCGGGTGCC 58.755 55.000 0.00 0.00 38.28 5.01
3854 6682 1.607148 GTGGGCTATTTATTCGGGTGC 59.393 52.381 0.00 0.00 0.00 5.01
3855 6683 3.208747 AGTGGGCTATTTATTCGGGTG 57.791 47.619 0.00 0.00 0.00 4.61
3856 6684 3.053917 ACAAGTGGGCTATTTATTCGGGT 60.054 43.478 0.00 0.00 0.00 5.28
3857 6685 3.551846 ACAAGTGGGCTATTTATTCGGG 58.448 45.455 0.00 0.00 0.00 5.14
3858 6686 5.576447 AAACAAGTGGGCTATTTATTCGG 57.424 39.130 0.00 0.00 0.00 4.30
3859 6687 5.263185 CGAAACAAGTGGGCTATTTATTCG 58.737 41.667 10.07 10.07 0.00 3.34
3860 6688 5.449999 CCCGAAACAAGTGGGCTATTTATTC 60.450 44.000 0.00 0.00 35.82 1.75
3861 6689 4.401202 CCCGAAACAAGTGGGCTATTTATT 59.599 41.667 0.00 0.00 35.82 1.40
3862 6690 3.951680 CCCGAAACAAGTGGGCTATTTAT 59.048 43.478 0.00 0.00 35.82 1.40
3863 6691 3.349022 CCCGAAACAAGTGGGCTATTTA 58.651 45.455 0.00 0.00 35.82 1.40
3864 6692 2.167662 CCCGAAACAAGTGGGCTATTT 58.832 47.619 0.00 0.00 35.82 1.40
3865 6693 1.834188 CCCGAAACAAGTGGGCTATT 58.166 50.000 0.00 0.00 35.82 1.73
3866 6694 3.569873 CCCGAAACAAGTGGGCTAT 57.430 52.632 0.00 0.00 35.82 2.97
3870 6698 0.821711 TCTTGCCCGAAACAAGTGGG 60.822 55.000 10.48 0.00 43.97 4.61
3871 6699 1.028905 TTCTTGCCCGAAACAAGTGG 58.971 50.000 10.48 0.00 43.97 4.00
3872 6700 2.293122 TCATTCTTGCCCGAAACAAGTG 59.707 45.455 10.48 4.87 43.97 3.16
3873 6701 2.582052 TCATTCTTGCCCGAAACAAGT 58.418 42.857 10.48 0.00 43.97 3.16
3874 6702 3.641437 TTCATTCTTGCCCGAAACAAG 57.359 42.857 5.89 5.89 44.76 3.16
3875 6703 3.305950 CCATTCATTCTTGCCCGAAACAA 60.306 43.478 0.00 0.00 0.00 2.83
3876 6704 2.230992 CCATTCATTCTTGCCCGAAACA 59.769 45.455 0.00 0.00 0.00 2.83
3877 6705 2.417243 CCCATTCATTCTTGCCCGAAAC 60.417 50.000 0.00 0.00 0.00 2.78
3878 6706 1.824230 CCCATTCATTCTTGCCCGAAA 59.176 47.619 0.00 0.00 0.00 3.46
3879 6707 1.005332 TCCCATTCATTCTTGCCCGAA 59.995 47.619 0.00 0.00 0.00 4.30
3880 6708 0.623194 TCCCATTCATTCTTGCCCGA 59.377 50.000 0.00 0.00 0.00 5.14
3881 6709 0.740737 GTCCCATTCATTCTTGCCCG 59.259 55.000 0.00 0.00 0.00 6.13
3882 6710 1.753073 CAGTCCCATTCATTCTTGCCC 59.247 52.381 0.00 0.00 0.00 5.36
3883 6711 2.726821 TCAGTCCCATTCATTCTTGCC 58.273 47.619 0.00 0.00 0.00 4.52
3884 6712 3.317430 GGATCAGTCCCATTCATTCTTGC 59.683 47.826 0.00 0.00 38.69 4.01
3897 6725 2.437413 GAAACAAGTGGGGATCAGTCC 58.563 52.381 0.00 0.00 44.29 3.85
3898 6726 2.076863 CGAAACAAGTGGGGATCAGTC 58.923 52.381 0.00 0.00 0.00 3.51
3899 6727 1.271379 CCGAAACAAGTGGGGATCAGT 60.271 52.381 0.00 0.00 0.00 3.41
3900 6728 1.453155 CCGAAACAAGTGGGGATCAG 58.547 55.000 0.00 0.00 0.00 2.90
3901 6729 0.037590 CCCGAAACAAGTGGGGATCA 59.962 55.000 0.00 0.00 42.59 2.92
3902 6730 1.313091 GCCCGAAACAAGTGGGGATC 61.313 60.000 0.00 0.00 43.52 3.36
3903 6731 1.304134 GCCCGAAACAAGTGGGGAT 60.304 57.895 0.00 0.00 43.52 3.85
3904 6732 2.114411 GCCCGAAACAAGTGGGGA 59.886 61.111 0.00 0.00 43.52 4.81
3905 6733 1.805428 CTTGCCCGAAACAAGTGGGG 61.805 60.000 0.00 0.00 43.52 4.96
3906 6734 0.821711 TCTTGCCCGAAACAAGTGGG 60.822 55.000 10.48 0.00 43.97 4.61
3907 6735 1.028905 TTCTTGCCCGAAACAAGTGG 58.971 50.000 10.48 0.00 43.97 4.00
3908 6736 2.293122 TCATTCTTGCCCGAAACAAGTG 59.707 45.455 10.48 4.87 43.97 3.16
3909 6737 2.582052 TCATTCTTGCCCGAAACAAGT 58.418 42.857 10.48 0.00 43.97 3.16
3910 6738 3.641437 TTCATTCTTGCCCGAAACAAG 57.359 42.857 5.89 5.89 44.76 3.16
3911 6739 3.305950 CCATTCATTCTTGCCCGAAACAA 60.306 43.478 0.00 0.00 0.00 2.83
3912 6740 2.230992 CCATTCATTCTTGCCCGAAACA 59.769 45.455 0.00 0.00 0.00 2.83
3913 6741 2.417243 CCCATTCATTCTTGCCCGAAAC 60.417 50.000 0.00 0.00 0.00 2.78
3914 6742 1.824230 CCCATTCATTCTTGCCCGAAA 59.176 47.619 0.00 0.00 0.00 3.46
3915 6743 1.005332 TCCCATTCATTCTTGCCCGAA 59.995 47.619 0.00 0.00 0.00 4.30
3916 6744 0.623194 TCCCATTCATTCTTGCCCGA 59.377 50.000 0.00 0.00 0.00 5.14
3917 6745 0.740737 GTCCCATTCATTCTTGCCCG 59.259 55.000 0.00 0.00 0.00 6.13
3918 6746 1.753073 CAGTCCCATTCATTCTTGCCC 59.247 52.381 0.00 0.00 0.00 5.36
3919 6747 2.726821 TCAGTCCCATTCATTCTTGCC 58.273 47.619 0.00 0.00 0.00 4.52
3920 6748 3.003068 CGATCAGTCCCATTCATTCTTGC 59.997 47.826 0.00 0.00 0.00 4.01
3921 6749 4.272018 GTCGATCAGTCCCATTCATTCTTG 59.728 45.833 0.00 0.00 0.00 3.02
3922 6750 4.163078 AGTCGATCAGTCCCATTCATTCTT 59.837 41.667 0.00 0.00 0.00 2.52
3923 6751 3.708631 AGTCGATCAGTCCCATTCATTCT 59.291 43.478 0.00 0.00 0.00 2.40
3924 6752 4.054671 GAGTCGATCAGTCCCATTCATTC 58.945 47.826 0.00 0.00 0.00 2.67
3925 6753 3.491619 CGAGTCGATCAGTCCCATTCATT 60.492 47.826 6.73 0.00 0.00 2.57
3926 6754 2.035193 CGAGTCGATCAGTCCCATTCAT 59.965 50.000 6.73 0.00 0.00 2.57
3927 6755 1.405463 CGAGTCGATCAGTCCCATTCA 59.595 52.381 6.73 0.00 0.00 2.57
3928 6756 1.676529 TCGAGTCGATCAGTCCCATTC 59.323 52.381 12.09 0.00 0.00 2.67
3929 6757 1.678627 CTCGAGTCGATCAGTCCCATT 59.321 52.381 16.94 0.00 34.61 3.16
3930 6758 1.313772 CTCGAGTCGATCAGTCCCAT 58.686 55.000 16.94 0.00 34.61 4.00
3931 6759 0.035343 ACTCGAGTCGATCAGTCCCA 60.035 55.000 16.94 0.00 34.61 4.37
3932 6760 1.096416 AACTCGAGTCGATCAGTCCC 58.904 55.000 20.33 0.00 34.61 4.46
3933 6761 2.031930 GGTAACTCGAGTCGATCAGTCC 59.968 54.545 20.33 11.20 34.61 3.85
3934 6762 2.285718 CGGTAACTCGAGTCGATCAGTC 60.286 54.545 20.33 5.58 34.61 3.51
3935 6763 1.664659 CGGTAACTCGAGTCGATCAGT 59.335 52.381 20.33 7.94 34.61 3.41
3936 6764 1.931841 TCGGTAACTCGAGTCGATCAG 59.068 52.381 20.33 7.23 34.61 2.90
3937 6765 2.014335 TCGGTAACTCGAGTCGATCA 57.986 50.000 20.33 1.04 34.61 2.92
3945 6773 1.808945 GAAGGTCACTCGGTAACTCGA 59.191 52.381 0.00 0.00 37.60 4.04
3946 6774 1.538512 TGAAGGTCACTCGGTAACTCG 59.461 52.381 0.00 0.00 0.00 4.18
3947 6775 2.943993 GTGAAGGTCACTCGGTAACTC 58.056 52.381 1.09 0.00 43.73 3.01
3957 6785 4.901607 TCGAGTCGAAGAGTGAAGGTCAC 61.902 52.174 13.98 0.00 42.24 3.67
3958 6786 1.535896 CGAGTCGAAGAGTGAAGGTCA 59.464 52.381 6.73 0.00 42.24 4.02
3959 6787 1.805345 TCGAGTCGAAGAGTGAAGGTC 59.195 52.381 13.98 0.00 42.24 3.85
3960 6788 1.893544 TCGAGTCGAAGAGTGAAGGT 58.106 50.000 13.98 0.00 42.24 3.50
3961 6789 2.991434 TTCGAGTCGAAGAGTGAAGG 57.009 50.000 23.54 0.00 42.24 3.46
3962 6790 4.877270 CTTTTCGAGTCGAAGAGTGAAG 57.123 45.455 28.54 23.00 46.43 3.02
3968 6796 3.250762 TCGGTAACTTTTCGAGTCGAAGA 59.749 43.478 25.52 20.99 46.43 2.87
3969 6797 3.558505 TCGGTAACTTTTCGAGTCGAAG 58.441 45.455 25.52 18.50 46.43 3.79
3970 6798 3.558505 CTCGGTAACTTTTCGAGTCGAA 58.441 45.455 23.54 23.54 44.28 3.71
3971 6799 3.193157 CTCGGTAACTTTTCGAGTCGA 57.807 47.619 12.09 12.09 43.51 4.20
3976 6804 2.624838 AGGTCACTCGGTAACTTTTCGA 59.375 45.455 0.00 0.00 0.00 3.71
3977 6805 2.985139 GAGGTCACTCGGTAACTTTTCG 59.015 50.000 0.00 0.00 33.35 3.46
3978 6806 3.243975 TGGAGGTCACTCGGTAACTTTTC 60.244 47.826 0.00 0.00 44.93 2.29
3979 6807 2.701951 TGGAGGTCACTCGGTAACTTTT 59.298 45.455 0.00 0.00 44.93 2.27
3980 6808 2.036862 GTGGAGGTCACTCGGTAACTTT 59.963 50.000 0.00 0.00 44.93 2.66
3981 6809 1.617357 GTGGAGGTCACTCGGTAACTT 59.383 52.381 0.00 0.00 44.93 2.66
3982 6810 1.254954 GTGGAGGTCACTCGGTAACT 58.745 55.000 0.00 0.00 44.93 2.24
3983 6811 3.808583 GTGGAGGTCACTCGGTAAC 57.191 57.895 0.00 0.00 44.93 2.50
3991 6819 1.200484 GAGTCGAAGAGTGGAGGTCAC 59.800 57.143 0.00 0.00 42.24 3.67
3992 6820 1.535833 GAGTCGAAGAGTGGAGGTCA 58.464 55.000 0.00 0.00 42.24 4.02
3993 6821 0.448593 CGAGTCGAAGAGTGGAGGTC 59.551 60.000 6.73 0.00 42.24 3.85
3994 6822 0.036448 TCGAGTCGAAGAGTGGAGGT 59.964 55.000 13.98 0.00 42.24 3.85
3995 6823 2.855887 TCGAGTCGAAGAGTGGAGG 58.144 57.895 13.98 0.00 42.24 4.30
3997 6825 0.321741 AGCTCGAGTCGAAGAGTGGA 60.322 55.000 17.27 0.00 42.24 4.02
3998 6826 0.523966 AAGCTCGAGTCGAAGAGTGG 59.476 55.000 17.27 4.76 42.24 4.00
3999 6827 2.246789 GAAAGCTCGAGTCGAAGAGTG 58.753 52.381 17.27 5.52 42.24 3.51
4000 6828 2.622546 GAAAGCTCGAGTCGAAGAGT 57.377 50.000 17.27 2.41 46.63 3.24
4020 6848 4.274459 TCAGAACAAGAGAAAAGCAGAAGC 59.726 41.667 0.00 0.00 42.56 3.86
4021 6849 5.998454 TCAGAACAAGAGAAAAGCAGAAG 57.002 39.130 0.00 0.00 0.00 2.85
4022 6850 6.949352 AATCAGAACAAGAGAAAAGCAGAA 57.051 33.333 0.00 0.00 0.00 3.02
4023 6851 6.949352 AAATCAGAACAAGAGAAAAGCAGA 57.051 33.333 0.00 0.00 0.00 4.26
4026 6854 9.283420 GCTAATAAATCAGAACAAGAGAAAAGC 57.717 33.333 0.00 0.00 0.00 3.51
4030 6858 8.454106 GCAAGCTAATAAATCAGAACAAGAGAA 58.546 33.333 0.00 0.00 0.00 2.87
4031 6859 7.607607 TGCAAGCTAATAAATCAGAACAAGAGA 59.392 33.333 0.00 0.00 0.00 3.10
4032 6860 7.755591 TGCAAGCTAATAAATCAGAACAAGAG 58.244 34.615 0.00 0.00 0.00 2.85
4033 6861 7.686438 TGCAAGCTAATAAATCAGAACAAGA 57.314 32.000 0.00 0.00 0.00 3.02
4034 6862 8.746922 TTTGCAAGCTAATAAATCAGAACAAG 57.253 30.769 0.00 0.00 0.00 3.16
4035 6863 9.539825 TTTTTGCAAGCTAATAAATCAGAACAA 57.460 25.926 0.00 0.00 0.00 2.83
4060 6888 4.583073 GTGGGAAGGTGTGTGATACTTTTT 59.417 41.667 0.00 0.00 0.00 1.94
4061 6889 4.142038 GTGGGAAGGTGTGTGATACTTTT 58.858 43.478 0.00 0.00 0.00 2.27
4062 6890 3.751518 GTGGGAAGGTGTGTGATACTTT 58.248 45.455 0.00 0.00 0.00 2.66
4065 6893 1.674817 CCGTGGGAAGGTGTGTGATAC 60.675 57.143 0.00 0.00 0.00 2.24
4079 6907 2.579201 CAGCTGTAGACCCGTGGG 59.421 66.667 5.25 2.58 42.03 4.61
4089 6917 4.937620 CACTTTGAAATAGAGGCAGCTGTA 59.062 41.667 16.64 0.00 0.00 2.74
4306 7287 7.126421 AGCTTCATTGGAATAGTTCTTCCTAGA 59.874 37.037 4.63 0.00 44.27 2.43
4312 7293 9.336171 GAGAATAGCTTCATTGGAATAGTTCTT 57.664 33.333 0.00 0.00 33.56 2.52
4320 7301 5.245531 ACAACGAGAATAGCTTCATTGGAA 58.754 37.500 0.00 0.00 33.56 3.53
4323 7304 9.214953 GAATAAACAACGAGAATAGCTTCATTG 57.785 33.333 0.00 0.00 33.56 2.82
4364 7345 7.391148 TTCTTCTGTAGAGTTTTGCTGTTTT 57.609 32.000 0.00 0.00 33.51 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.