Multiple sequence alignment - TraesCS1A01G371200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G371200 chr1A 100.000 2144 0 0 1 2144 548443211 548445354 0.000000e+00 3960
1 TraesCS1A01G371200 chr1A 85.612 417 45 4 789 1198 548452715 548453123 7.070000e-115 424
2 TraesCS1A01G371200 chr1A 89.954 219 12 3 1199 1412 548453155 548453368 7.540000e-70 274
3 TraesCS1A01G371200 chr1A 93.878 147 3 2 993 1133 547977973 547978119 1.290000e-52 217
4 TraesCS1A01G371200 chr1A 88.764 178 13 3 963 1133 547959005 547959182 5.990000e-51 211
5 TraesCS1A01G371200 chr1A 88.387 155 15 1 1790 1944 1800775 1800926 1.310000e-42 183
6 TraesCS1A01G371200 chr1A 81.503 173 20 8 1624 1790 548453920 548454086 4.800000e-27 132
7 TraesCS1A01G371200 chr1B 87.276 1281 74 42 425 1688 623988724 623989932 0.000000e+00 1380
8 TraesCS1A01G371200 chr1B 83.277 885 65 35 592 1436 624015945 624016786 0.000000e+00 737
9 TraesCS1A01G371200 chr1B 91.228 171 15 0 963 1133 623722455 623722625 1.280000e-57 233
10 TraesCS1A01G371200 chr1B 95.139 144 7 0 1983 2126 623990374 623990517 5.950000e-56 228
11 TraesCS1A01G371200 chr1B 91.837 98 8 0 238 335 623988479 623988576 1.030000e-28 137
12 TraesCS1A01G371200 chr1B 82.237 152 18 4 1974 2125 624018717 624018859 2.890000e-24 122
13 TraesCS1A01G371200 chr1D 87.248 1090 52 36 410 1452 453552759 453553808 0.000000e+00 1162
14 TraesCS1A01G371200 chr1D 83.100 858 79 38 605 1425 453570755 453571583 0.000000e+00 721
15 TraesCS1A01G371200 chr1D 96.721 183 6 0 1946 2128 453554826 453555008 2.670000e-79 305
16 TraesCS1A01G371200 chr1D 86.594 276 32 4 1523 1795 453554453 453554726 1.240000e-77 300
17 TraesCS1A01G371200 chr1D 91.813 171 14 0 963 1133 453269090 453269260 2.750000e-59 239
18 TraesCS1A01G371200 chr1D 91.503 153 10 3 1793 1945 493379086 493378937 7.750000e-50 207
19 TraesCS1A01G371200 chr1D 80.189 212 27 12 1503 1713 453571932 453572129 6.170000e-31 145
20 TraesCS1A01G371200 chr1D 93.684 95 6 0 241 335 453552531 453552625 2.220000e-30 143
21 TraesCS1A01G371200 chr5A 95.513 156 3 1 1790 1945 85355200 85355351 1.640000e-61 246
22 TraesCS1A01G371200 chr5A 90.441 136 11 2 1797 1932 85355097 85354964 6.080000e-41 178
23 TraesCS1A01G371200 chr3A 92.157 153 11 1 1793 1945 744793550 744793399 4.630000e-52 215
24 TraesCS1A01G371200 chrUn 91.026 156 11 3 1790 1945 71298290 71298442 7.750000e-50 207
25 TraesCS1A01G371200 chr6B 91.391 151 6 6 1797 1945 25265003 25264858 1.300000e-47 200
26 TraesCS1A01G371200 chr6B 90.441 136 11 1 1797 1932 699016818 699016685 6.080000e-41 178
27 TraesCS1A01G371200 chr2B 88.235 153 12 2 1796 1944 666738146 666737996 6.080000e-41 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G371200 chr1A 548443211 548445354 2143 False 3960.000000 3960 100.000000 1 2144 1 chr1A.!!$F4 2143
1 TraesCS1A01G371200 chr1A 548452715 548454086 1371 False 276.666667 424 85.689667 789 1790 3 chr1A.!!$F5 1001
2 TraesCS1A01G371200 chr1B 623988479 623990517 2038 False 581.666667 1380 91.417333 238 2126 3 chr1B.!!$F2 1888
3 TraesCS1A01G371200 chr1B 624015945 624018859 2914 False 429.500000 737 82.757000 592 2125 2 chr1B.!!$F3 1533
4 TraesCS1A01G371200 chr1D 453552531 453555008 2477 False 477.500000 1162 91.061750 241 2128 4 chr1D.!!$F2 1887
5 TraesCS1A01G371200 chr1D 453570755 453572129 1374 False 433.000000 721 81.644500 605 1713 2 chr1D.!!$F3 1108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
763 868 0.258484 CAGCCTCCCTCTCTCTCTCA 59.742 60.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 4177 0.036306 AAAGGTGTAACAGCTCCCGG 59.964 55.0 0.0 0.0 41.59 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.838225 CCCAGGATCGCCGTACCT 60.838 66.667 0.00 0.00 39.96 3.08
18 19 2.432300 CCCAGGATCGCCGTACCTT 61.432 63.158 2.60 0.00 39.96 3.50
19 20 1.067582 CCAGGATCGCCGTACCTTC 59.932 63.158 2.60 0.00 39.96 3.46
20 21 1.672854 CCAGGATCGCCGTACCTTCA 61.673 60.000 2.60 0.00 39.96 3.02
21 22 0.527817 CAGGATCGCCGTACCTTCAC 60.528 60.000 2.60 0.00 39.96 3.18
22 23 0.968901 AGGATCGCCGTACCTTCACA 60.969 55.000 0.00 0.00 39.96 3.58
23 24 0.804933 GGATCGCCGTACCTTCACAC 60.805 60.000 0.00 0.00 0.00 3.82
24 25 0.804933 GATCGCCGTACCTTCACACC 60.805 60.000 0.00 0.00 0.00 4.16
25 26 2.552585 ATCGCCGTACCTTCACACCG 62.553 60.000 0.00 0.00 0.00 4.94
26 27 3.116531 GCCGTACCTTCACACCGC 61.117 66.667 0.00 0.00 0.00 5.68
27 28 2.807895 CCGTACCTTCACACCGCG 60.808 66.667 0.00 0.00 0.00 6.46
28 29 2.256158 CGTACCTTCACACCGCGA 59.744 61.111 8.23 0.00 0.00 5.87
29 30 2.084681 CGTACCTTCACACCGCGAC 61.085 63.158 8.23 0.00 0.00 5.19
30 31 1.007038 GTACCTTCACACCGCGACA 60.007 57.895 8.23 0.00 0.00 4.35
31 32 0.598158 GTACCTTCACACCGCGACAA 60.598 55.000 8.23 0.00 0.00 3.18
32 33 0.319083 TACCTTCACACCGCGACAAT 59.681 50.000 8.23 0.00 0.00 2.71
33 34 0.319083 ACCTTCACACCGCGACAATA 59.681 50.000 8.23 0.00 0.00 1.90
34 35 0.719465 CCTTCACACCGCGACAATAC 59.281 55.000 8.23 0.00 0.00 1.89
35 36 1.424403 CTTCACACCGCGACAATACA 58.576 50.000 8.23 0.00 0.00 2.29
36 37 1.126113 CTTCACACCGCGACAATACAC 59.874 52.381 8.23 0.00 0.00 2.90
37 38 0.668096 TCACACCGCGACAATACACC 60.668 55.000 8.23 0.00 0.00 4.16
38 39 1.735198 ACACCGCGACAATACACCG 60.735 57.895 8.23 0.00 0.00 4.94
39 40 2.125832 ACCGCGACAATACACCGG 60.126 61.111 8.23 0.00 44.19 5.28
40 41 2.182284 CCGCGACAATACACCGGA 59.818 61.111 9.46 0.00 41.34 5.14
41 42 1.227147 CCGCGACAATACACCGGAT 60.227 57.895 9.46 0.00 41.34 4.18
42 43 1.487452 CCGCGACAATACACCGGATG 61.487 60.000 9.46 5.32 41.34 3.51
43 44 0.804544 CGCGACAATACACCGGATGT 60.805 55.000 9.46 11.88 46.06 3.06
44 45 1.365699 GCGACAATACACCGGATGTT 58.634 50.000 9.46 0.00 43.19 2.71
45 46 1.735571 GCGACAATACACCGGATGTTT 59.264 47.619 9.46 1.01 43.19 2.83
46 47 2.931325 GCGACAATACACCGGATGTTTA 59.069 45.455 9.46 0.00 43.19 2.01
47 48 3.371591 GCGACAATACACCGGATGTTTAA 59.628 43.478 9.46 0.00 43.19 1.52
48 49 4.034742 GCGACAATACACCGGATGTTTAAT 59.965 41.667 9.46 0.00 43.19 1.40
49 50 5.498159 CGACAATACACCGGATGTTTAATG 58.502 41.667 9.46 8.61 43.19 1.90
50 51 5.503357 CGACAATACACCGGATGTTTAATGG 60.503 44.000 9.46 0.10 43.19 3.16
51 52 4.097286 ACAATACACCGGATGTTTAATGGC 59.903 41.667 9.46 0.00 43.19 4.40
52 53 1.470051 ACACCGGATGTTTAATGGCC 58.530 50.000 9.46 0.00 38.98 5.36
53 54 1.005450 ACACCGGATGTTTAATGGCCT 59.995 47.619 9.46 0.00 38.98 5.19
54 55 2.099405 CACCGGATGTTTAATGGCCTT 58.901 47.619 9.46 0.00 0.00 4.35
55 56 2.495669 CACCGGATGTTTAATGGCCTTT 59.504 45.455 9.46 6.72 0.00 3.11
56 57 2.758423 ACCGGATGTTTAATGGCCTTTC 59.242 45.455 9.46 0.00 0.00 2.62
57 58 2.100749 CCGGATGTTTAATGGCCTTTCC 59.899 50.000 7.23 0.96 0.00 3.13
58 59 2.223479 CGGATGTTTAATGGCCTTTCCG 60.223 50.000 7.23 9.74 38.91 4.30
59 60 3.020984 GGATGTTTAATGGCCTTTCCGA 58.979 45.455 7.23 0.00 37.80 4.55
60 61 3.066760 GGATGTTTAATGGCCTTTCCGAG 59.933 47.826 7.23 0.00 37.80 4.63
61 62 1.816224 TGTTTAATGGCCTTTCCGAGC 59.184 47.619 7.23 0.00 37.80 5.03
62 63 1.816224 GTTTAATGGCCTTTCCGAGCA 59.184 47.619 7.23 0.00 37.80 4.26
63 64 1.459450 TTAATGGCCTTTCCGAGCAC 58.541 50.000 7.23 0.00 37.80 4.40
64 65 0.393808 TAATGGCCTTTCCGAGCACC 60.394 55.000 7.23 0.00 37.80 5.01
65 66 3.976701 ATGGCCTTTCCGAGCACCG 62.977 63.158 3.32 0.00 37.80 4.94
66 67 4.388499 GGCCTTTCCGAGCACCGA 62.388 66.667 0.00 0.00 41.76 4.69
67 68 2.358247 GCCTTTCCGAGCACCGAA 60.358 61.111 0.00 0.00 41.76 4.30
68 69 1.745489 GCCTTTCCGAGCACCGAAT 60.745 57.895 0.00 0.00 41.76 3.34
69 70 0.461339 GCCTTTCCGAGCACCGAATA 60.461 55.000 0.00 0.00 41.76 1.75
70 71 1.810412 GCCTTTCCGAGCACCGAATAT 60.810 52.381 0.00 0.00 41.76 1.28
71 72 2.547218 GCCTTTCCGAGCACCGAATATA 60.547 50.000 0.00 0.00 41.76 0.86
72 73 3.318017 CCTTTCCGAGCACCGAATATAG 58.682 50.000 0.00 0.00 41.76 1.31
73 74 3.243771 CCTTTCCGAGCACCGAATATAGT 60.244 47.826 0.00 0.00 41.76 2.12
74 75 3.637998 TTCCGAGCACCGAATATAGTC 57.362 47.619 0.00 0.00 41.76 2.59
75 76 2.860009 TCCGAGCACCGAATATAGTCT 58.140 47.619 0.00 0.00 41.76 3.24
76 77 2.552743 TCCGAGCACCGAATATAGTCTG 59.447 50.000 0.00 0.00 41.76 3.51
77 78 2.320367 CGAGCACCGAATATAGTCTGC 58.680 52.381 6.36 6.36 41.76 4.26
78 79 2.287608 CGAGCACCGAATATAGTCTGCA 60.288 50.000 14.43 0.00 41.76 4.41
79 80 3.053455 GAGCACCGAATATAGTCTGCAC 58.947 50.000 14.43 6.63 0.00 4.57
80 81 2.430694 AGCACCGAATATAGTCTGCACA 59.569 45.455 14.43 0.00 0.00 4.57
81 82 3.070159 AGCACCGAATATAGTCTGCACAT 59.930 43.478 14.43 0.00 0.00 3.21
82 83 3.185188 GCACCGAATATAGTCTGCACATG 59.815 47.826 8.92 0.00 0.00 3.21
83 84 4.371786 CACCGAATATAGTCTGCACATGT 58.628 43.478 0.00 0.00 0.00 3.21
84 85 4.209911 CACCGAATATAGTCTGCACATGTG 59.790 45.833 21.83 21.83 0.00 3.21
85 86 4.141937 ACCGAATATAGTCTGCACATGTGT 60.142 41.667 26.01 9.30 0.00 3.72
87 88 4.209911 CGAATATAGTCTGCACATGTGTGG 59.790 45.833 26.01 18.24 45.72 4.17
88 89 1.742761 ATAGTCTGCACATGTGTGGC 58.257 50.000 26.01 19.75 45.72 5.01
89 90 0.321564 TAGTCTGCACATGTGTGGCC 60.322 55.000 26.01 10.66 45.72 5.36
90 91 2.669229 TCTGCACATGTGTGGCCG 60.669 61.111 26.01 9.46 45.72 6.13
91 92 3.740397 CTGCACATGTGTGGCCGG 61.740 66.667 26.01 11.18 45.72 6.13
92 93 4.577677 TGCACATGTGTGGCCGGT 62.578 61.111 26.01 0.00 45.72 5.28
93 94 3.294493 GCACATGTGTGGCCGGTT 61.294 61.111 26.01 0.00 45.72 4.44
94 95 2.855514 GCACATGTGTGGCCGGTTT 61.856 57.895 26.01 0.00 45.72 3.27
95 96 1.739049 CACATGTGTGGCCGGTTTT 59.261 52.632 18.03 0.00 42.10 2.43
96 97 0.955178 CACATGTGTGGCCGGTTTTA 59.045 50.000 18.03 0.00 42.10 1.52
97 98 1.543802 CACATGTGTGGCCGGTTTTAT 59.456 47.619 18.03 0.00 42.10 1.40
98 99 1.543802 ACATGTGTGGCCGGTTTTATG 59.456 47.619 1.90 3.76 0.00 1.90
99 100 1.543802 CATGTGTGGCCGGTTTTATGT 59.456 47.619 1.90 0.00 0.00 2.29
100 101 1.693627 TGTGTGGCCGGTTTTATGTT 58.306 45.000 1.90 0.00 0.00 2.71
101 102 2.032620 TGTGTGGCCGGTTTTATGTTT 58.967 42.857 1.90 0.00 0.00 2.83
102 103 2.431057 TGTGTGGCCGGTTTTATGTTTT 59.569 40.909 1.90 0.00 0.00 2.43
103 104 3.054166 GTGTGGCCGGTTTTATGTTTTC 58.946 45.455 1.90 0.00 0.00 2.29
104 105 2.036089 TGTGGCCGGTTTTATGTTTTCC 59.964 45.455 1.90 0.00 0.00 3.13
105 106 2.036089 GTGGCCGGTTTTATGTTTTCCA 59.964 45.455 1.90 0.00 0.00 3.53
106 107 2.900546 TGGCCGGTTTTATGTTTTCCAT 59.099 40.909 1.90 0.00 37.58 3.41
107 108 3.056465 TGGCCGGTTTTATGTTTTCCATC 60.056 43.478 1.90 0.00 34.86 3.51
108 109 3.175929 GCCGGTTTTATGTTTTCCATCG 58.824 45.455 1.90 0.00 34.86 3.84
109 110 3.366577 GCCGGTTTTATGTTTTCCATCGT 60.367 43.478 1.90 0.00 34.86 3.73
110 111 4.162812 CCGGTTTTATGTTTTCCATCGTG 58.837 43.478 0.00 0.00 34.86 4.35
111 112 3.606346 CGGTTTTATGTTTTCCATCGTGC 59.394 43.478 0.00 0.00 34.86 5.34
112 113 4.551388 GGTTTTATGTTTTCCATCGTGCA 58.449 39.130 0.00 0.00 34.86 4.57
113 114 4.384547 GGTTTTATGTTTTCCATCGTGCAC 59.615 41.667 6.82 6.82 34.86 4.57
114 115 5.219633 GTTTTATGTTTTCCATCGTGCACT 58.780 37.500 16.19 0.00 34.86 4.40
115 116 2.995466 ATGTTTTCCATCGTGCACTG 57.005 45.000 16.19 7.22 0.00 3.66
116 117 1.674359 TGTTTTCCATCGTGCACTGT 58.326 45.000 16.19 0.00 0.00 3.55
117 118 2.020720 TGTTTTCCATCGTGCACTGTT 58.979 42.857 16.19 0.96 0.00 3.16
118 119 2.223456 TGTTTTCCATCGTGCACTGTTG 60.223 45.455 16.19 12.79 0.00 3.33
119 120 1.674359 TTTCCATCGTGCACTGTTGT 58.326 45.000 16.19 0.00 0.00 3.32
120 121 1.674359 TTCCATCGTGCACTGTTGTT 58.326 45.000 16.19 0.00 0.00 2.83
121 122 1.674359 TCCATCGTGCACTGTTGTTT 58.326 45.000 16.19 0.00 0.00 2.83
122 123 2.020720 TCCATCGTGCACTGTTGTTTT 58.979 42.857 16.19 0.00 0.00 2.43
123 124 2.118683 CCATCGTGCACTGTTGTTTTG 58.881 47.619 16.19 0.00 0.00 2.44
124 125 1.518102 CATCGTGCACTGTTGTTTTGC 59.482 47.619 16.19 0.00 36.76 3.68
125 126 0.522286 TCGTGCACTGTTGTTTTGCG 60.522 50.000 16.19 0.00 39.22 4.85
126 127 0.522286 CGTGCACTGTTGTTTTGCGA 60.522 50.000 16.19 0.00 39.22 5.10
127 128 1.838913 GTGCACTGTTGTTTTGCGAT 58.161 45.000 10.32 0.00 39.22 4.58
128 129 2.192624 GTGCACTGTTGTTTTGCGATT 58.807 42.857 10.32 0.00 39.22 3.34
129 130 3.367607 GTGCACTGTTGTTTTGCGATTA 58.632 40.909 10.32 0.00 39.22 1.75
130 131 3.179599 GTGCACTGTTGTTTTGCGATTAC 59.820 43.478 10.32 0.00 39.22 1.89
131 132 2.400408 GCACTGTTGTTTTGCGATTACG 59.600 45.455 0.00 0.00 42.93 3.18
132 133 2.970609 CACTGTTGTTTTGCGATTACGG 59.029 45.455 0.00 0.00 40.15 4.02
133 134 2.614983 ACTGTTGTTTTGCGATTACGGT 59.385 40.909 0.00 0.00 40.15 4.83
134 135 3.065648 ACTGTTGTTTTGCGATTACGGTT 59.934 39.130 0.00 0.00 40.15 4.44
135 136 4.272991 ACTGTTGTTTTGCGATTACGGTTA 59.727 37.500 0.00 0.00 40.15 2.85
136 137 5.049267 ACTGTTGTTTTGCGATTACGGTTAT 60.049 36.000 0.00 0.00 40.15 1.89
137 138 5.147865 TGTTGTTTTGCGATTACGGTTATG 58.852 37.500 0.00 0.00 40.15 1.90
138 139 3.749404 TGTTTTGCGATTACGGTTATGC 58.251 40.909 0.00 0.00 40.15 3.14
139 140 3.437395 TGTTTTGCGATTACGGTTATGCT 59.563 39.130 0.00 0.00 40.15 3.79
140 141 4.083217 TGTTTTGCGATTACGGTTATGCTT 60.083 37.500 0.00 0.00 40.15 3.91
141 142 3.666883 TTGCGATTACGGTTATGCTTG 57.333 42.857 0.00 0.00 40.15 4.01
142 143 1.329292 TGCGATTACGGTTATGCTTGC 59.671 47.619 0.00 0.00 40.15 4.01
143 144 1.597663 GCGATTACGGTTATGCTTGCT 59.402 47.619 0.00 0.00 40.15 3.91
144 145 2.599848 GCGATTACGGTTATGCTTGCTG 60.600 50.000 0.00 0.00 40.15 4.41
145 146 2.863740 CGATTACGGTTATGCTTGCTGA 59.136 45.455 0.00 0.00 35.72 4.26
146 147 3.308595 CGATTACGGTTATGCTTGCTGAA 59.691 43.478 0.00 0.00 35.72 3.02
147 148 4.550831 CGATTACGGTTATGCTTGCTGAAG 60.551 45.833 0.00 0.00 35.72 3.02
148 149 2.185004 ACGGTTATGCTTGCTGAAGT 57.815 45.000 0.00 0.00 0.00 3.01
149 150 2.504367 ACGGTTATGCTTGCTGAAGTT 58.496 42.857 0.00 0.00 0.00 2.66
150 151 3.670625 ACGGTTATGCTTGCTGAAGTTA 58.329 40.909 0.00 0.00 0.00 2.24
151 152 3.435671 ACGGTTATGCTTGCTGAAGTTAC 59.564 43.478 0.00 0.00 0.00 2.50
152 153 3.435327 CGGTTATGCTTGCTGAAGTTACA 59.565 43.478 0.00 0.00 0.00 2.41
153 154 4.083537 CGGTTATGCTTGCTGAAGTTACAA 60.084 41.667 0.00 0.00 0.00 2.41
154 155 5.393962 GGTTATGCTTGCTGAAGTTACAAG 58.606 41.667 7.92 7.92 42.90 3.16
155 156 5.181245 GGTTATGCTTGCTGAAGTTACAAGA 59.819 40.000 13.99 3.60 42.71 3.02
156 157 4.756084 ATGCTTGCTGAAGTTACAAGAC 57.244 40.909 13.99 7.90 42.71 3.01
157 158 3.808728 TGCTTGCTGAAGTTACAAGACT 58.191 40.909 13.99 0.00 42.71 3.24
158 159 4.199310 TGCTTGCTGAAGTTACAAGACTT 58.801 39.130 13.99 0.00 42.71 3.01
159 160 4.035558 TGCTTGCTGAAGTTACAAGACTTG 59.964 41.667 13.77 13.77 42.71 3.16
161 162 5.449177 GCTTGCTGAAGTTACAAGACTTGTT 60.449 40.000 25.10 8.04 42.22 2.83
162 163 6.238374 GCTTGCTGAAGTTACAAGACTTGTTA 60.238 38.462 25.10 14.30 42.22 2.41
163 164 7.520614 GCTTGCTGAAGTTACAAGACTTGTTAT 60.521 37.037 25.10 9.56 42.22 1.89
164 165 7.189693 TGCTGAAGTTACAAGACTTGTTATG 57.810 36.000 25.10 10.35 42.22 1.90
165 166 6.989759 TGCTGAAGTTACAAGACTTGTTATGA 59.010 34.615 25.10 5.30 42.22 2.15
166 167 7.661437 TGCTGAAGTTACAAGACTTGTTATGAT 59.339 33.333 25.10 9.17 42.22 2.45
167 168 8.171840 GCTGAAGTTACAAGACTTGTTATGATC 58.828 37.037 25.10 16.58 42.22 2.92
168 169 9.208022 CTGAAGTTACAAGACTTGTTATGATCA 57.792 33.333 25.10 19.46 42.22 2.92
169 170 9.208022 TGAAGTTACAAGACTTGTTATGATCAG 57.792 33.333 25.10 0.00 42.22 2.90
170 171 7.602517 AGTTACAAGACTTGTTATGATCAGC 57.397 36.000 25.10 8.24 42.22 4.26
171 172 7.390027 AGTTACAAGACTTGTTATGATCAGCT 58.610 34.615 25.10 10.29 42.22 4.24
172 173 7.547370 AGTTACAAGACTTGTTATGATCAGCTC 59.453 37.037 25.10 2.47 42.22 4.09
173 174 5.798132 ACAAGACTTGTTATGATCAGCTCA 58.202 37.500 15.23 0.00 42.22 4.26
174 175 5.873712 ACAAGACTTGTTATGATCAGCTCAG 59.126 40.000 15.23 0.00 42.22 3.35
175 176 5.929058 AGACTTGTTATGATCAGCTCAGA 57.071 39.130 0.09 0.00 37.28 3.27
176 177 5.904941 AGACTTGTTATGATCAGCTCAGAG 58.095 41.667 0.09 0.00 37.28 3.35
177 178 5.655974 AGACTTGTTATGATCAGCTCAGAGA 59.344 40.000 0.00 0.00 37.28 3.10
178 179 6.324512 AGACTTGTTATGATCAGCTCAGAGAT 59.675 38.462 0.00 0.00 37.28 2.75
179 180 7.505248 AGACTTGTTATGATCAGCTCAGAGATA 59.495 37.037 0.00 0.00 37.28 1.98
180 181 8.016301 ACTTGTTATGATCAGCTCAGAGATAA 57.984 34.615 0.00 0.00 37.28 1.75
181 182 8.649591 ACTTGTTATGATCAGCTCAGAGATAAT 58.350 33.333 0.00 0.00 37.28 1.28
182 183 9.491675 CTTGTTATGATCAGCTCAGAGATAATT 57.508 33.333 0.00 0.00 37.28 1.40
183 184 9.486497 TTGTTATGATCAGCTCAGAGATAATTC 57.514 33.333 0.00 0.00 37.28 2.17
184 185 8.093307 TGTTATGATCAGCTCAGAGATAATTCC 58.907 37.037 0.00 0.00 37.28 3.01
185 186 5.480642 TGATCAGCTCAGAGATAATTCCC 57.519 43.478 0.00 0.00 0.00 3.97
186 187 4.903649 TGATCAGCTCAGAGATAATTCCCA 59.096 41.667 0.00 0.00 0.00 4.37
187 188 5.546887 TGATCAGCTCAGAGATAATTCCCAT 59.453 40.000 0.00 0.00 0.00 4.00
188 189 5.480642 TCAGCTCAGAGATAATTCCCATC 57.519 43.478 0.00 0.00 0.00 3.51
189 190 4.285517 TCAGCTCAGAGATAATTCCCATCC 59.714 45.833 0.00 0.00 0.00 3.51
190 191 3.586618 AGCTCAGAGATAATTCCCATCCC 59.413 47.826 0.00 0.00 0.00 3.85
191 192 3.308046 GCTCAGAGATAATTCCCATCCCC 60.308 52.174 0.00 0.00 0.00 4.81
192 193 3.912528 CTCAGAGATAATTCCCATCCCCA 59.087 47.826 0.00 0.00 0.00 4.96
193 194 3.912528 TCAGAGATAATTCCCATCCCCAG 59.087 47.826 0.00 0.00 0.00 4.45
194 195 2.646798 AGAGATAATTCCCATCCCCAGC 59.353 50.000 0.00 0.00 0.00 4.85
195 196 1.713078 AGATAATTCCCATCCCCAGCC 59.287 52.381 0.00 0.00 0.00 4.85
196 197 0.786435 ATAATTCCCATCCCCAGCCC 59.214 55.000 0.00 0.00 0.00 5.19
197 198 0.329434 TAATTCCCATCCCCAGCCCT 60.329 55.000 0.00 0.00 0.00 5.19
198 199 1.659035 AATTCCCATCCCCAGCCCTC 61.659 60.000 0.00 0.00 0.00 4.30
224 225 4.941609 GATGCACACCATCGACCT 57.058 55.556 0.00 0.00 40.84 3.85
225 226 2.387309 GATGCACACCATCGACCTG 58.613 57.895 0.00 0.00 40.84 4.00
226 227 1.709147 GATGCACACCATCGACCTGC 61.709 60.000 0.00 0.00 40.84 4.85
227 228 2.358615 GCACACCATCGACCTGCA 60.359 61.111 0.00 0.00 0.00 4.41
228 229 1.746615 GCACACCATCGACCTGCAT 60.747 57.895 0.00 0.00 0.00 3.96
229 230 0.461870 GCACACCATCGACCTGCATA 60.462 55.000 0.00 0.00 0.00 3.14
230 231 1.811558 GCACACCATCGACCTGCATAT 60.812 52.381 0.00 0.00 0.00 1.78
231 232 1.869132 CACACCATCGACCTGCATATG 59.131 52.381 0.00 0.00 0.00 1.78
232 233 0.870393 CACCATCGACCTGCATATGC 59.130 55.000 21.09 21.09 42.50 3.14
243 244 3.786656 GCATATGCACCTCACCTCA 57.213 52.632 22.84 0.00 41.59 3.86
244 245 1.303309 GCATATGCACCTCACCTCAC 58.697 55.000 22.84 0.00 41.59 3.51
245 246 1.959042 CATATGCACCTCACCTCACC 58.041 55.000 0.00 0.00 0.00 4.02
260 261 2.744202 CCTCACCGGAAGAAAACTGATG 59.256 50.000 9.46 0.00 33.16 3.07
302 303 6.319141 AGTTGCTCAAGATAACAAGGAAAC 57.681 37.500 0.00 0.00 0.00 2.78
304 305 5.947228 TGCTCAAGATAACAAGGAAACAG 57.053 39.130 0.00 0.00 0.00 3.16
312 313 2.849294 ACAAGGAAACAGAGAGCTCC 57.151 50.000 10.93 1.70 0.00 4.70
326 327 4.408270 AGAGAGCTCCTAAATCTGATGCAA 59.592 41.667 10.93 0.00 0.00 4.08
345 353 3.997021 GCAAGCTCATGTGTGTACTACTT 59.003 43.478 0.00 0.00 0.00 2.24
348 356 5.977489 AGCTCATGTGTGTACTACTTACA 57.023 39.130 0.00 0.00 38.45 2.41
372 427 5.814764 GCATCAGCCTATATTTCTCATGG 57.185 43.478 0.00 0.00 33.58 3.66
373 428 5.494724 GCATCAGCCTATATTTCTCATGGA 58.505 41.667 0.00 0.00 33.58 3.41
374 429 5.942236 GCATCAGCCTATATTTCTCATGGAA 59.058 40.000 0.00 0.00 33.58 3.53
375 430 6.602406 GCATCAGCCTATATTTCTCATGGAAT 59.398 38.462 0.00 0.00 31.98 3.01
396 451 2.877786 TGGAACACACTGTACAATGCTG 59.122 45.455 3.81 4.95 0.00 4.41
397 452 3.138304 GGAACACACTGTACAATGCTGA 58.862 45.455 3.81 0.00 0.00 4.26
398 453 3.753272 GGAACACACTGTACAATGCTGAT 59.247 43.478 3.81 0.00 0.00 2.90
403 458 2.679837 CACTGTACAATGCTGATCCACC 59.320 50.000 0.00 0.00 0.00 4.61
404 459 2.305635 ACTGTACAATGCTGATCCACCA 59.694 45.455 0.00 0.00 0.00 4.17
405 460 2.941064 CTGTACAATGCTGATCCACCAG 59.059 50.000 0.00 0.00 37.23 4.00
422 489 2.028476 ACCAGCTTAACACGAGCACATA 60.028 45.455 0.00 0.00 42.56 2.29
493 564 2.024226 ATTCTATGCACGCACGCACG 62.024 55.000 0.00 0.00 46.56 5.34
494 565 4.851114 CTATGCACGCACGCACGC 62.851 66.667 0.00 0.00 46.56 5.34
506 577 2.173382 GCACGCACACGGATGAAC 59.827 61.111 0.00 0.00 46.04 3.18
557 628 2.046892 GACAGGCCGTGCATCTGT 60.047 61.111 12.50 12.50 43.50 3.41
669 749 2.203126 CTGGAGGAAGATGCCGGC 60.203 66.667 22.73 22.73 0.00 6.13
751 856 4.437587 ACTGCCATGCCAGCCTCC 62.438 66.667 3.05 0.00 36.29 4.30
754 859 4.891037 GCCATGCCAGCCTCCCTC 62.891 72.222 0.00 0.00 0.00 4.30
755 860 3.095163 CCATGCCAGCCTCCCTCT 61.095 66.667 0.00 0.00 0.00 3.69
756 861 2.509916 CATGCCAGCCTCCCTCTC 59.490 66.667 0.00 0.00 0.00 3.20
757 862 2.071262 CATGCCAGCCTCCCTCTCT 61.071 63.158 0.00 0.00 0.00 3.10
758 863 1.765657 ATGCCAGCCTCCCTCTCTC 60.766 63.158 0.00 0.00 0.00 3.20
759 864 2.042025 GCCAGCCTCCCTCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
760 865 2.133641 GCCAGCCTCCCTCTCTCTC 61.134 68.421 0.00 0.00 0.00 3.20
761 866 1.620259 CCAGCCTCCCTCTCTCTCT 59.380 63.158 0.00 0.00 0.00 3.10
762 867 0.468029 CCAGCCTCCCTCTCTCTCTC 60.468 65.000 0.00 0.00 0.00 3.20
763 868 0.258484 CAGCCTCCCTCTCTCTCTCA 59.742 60.000 0.00 0.00 0.00 3.27
764 869 1.006813 AGCCTCCCTCTCTCTCTCAA 58.993 55.000 0.00 0.00 0.00 3.02
765 870 1.360852 AGCCTCCCTCTCTCTCTCAAA 59.639 52.381 0.00 0.00 0.00 2.69
768 873 2.622942 CCTCCCTCTCTCTCTCAAATCG 59.377 54.545 0.00 0.00 0.00 3.34
784 889 4.431035 CGCGATCACCGGGTTATT 57.569 55.556 6.32 0.00 44.85 1.40
785 890 3.573569 CGCGATCACCGGGTTATTA 57.426 52.632 6.32 0.00 44.85 0.98
786 891 2.074547 CGCGATCACCGGGTTATTAT 57.925 50.000 6.32 0.00 44.85 1.28
787 892 1.724623 CGCGATCACCGGGTTATTATG 59.275 52.381 6.32 0.00 44.85 1.90
817 926 0.962356 ATGCGCAAGTAGGCAAAGCT 60.962 50.000 17.11 0.00 43.26 3.74
977 1097 1.003233 GCTCAACCACCCTCCTGTC 60.003 63.158 0.00 0.00 0.00 3.51
1143 1281 2.366533 CTCCTCTGCTACCACGACTAA 58.633 52.381 0.00 0.00 0.00 2.24
1286 1480 2.151502 TGGTGTGATGTGGTTTGGTT 57.848 45.000 0.00 0.00 0.00 3.67
1287 1481 2.461695 TGGTGTGATGTGGTTTGGTTT 58.538 42.857 0.00 0.00 0.00 3.27
1288 1482 2.167281 TGGTGTGATGTGGTTTGGTTTG 59.833 45.455 0.00 0.00 0.00 2.93
1289 1483 2.482839 GGTGTGATGTGGTTTGGTTTGG 60.483 50.000 0.00 0.00 0.00 3.28
1290 1484 2.167487 GTGTGATGTGGTTTGGTTTGGT 59.833 45.455 0.00 0.00 0.00 3.67
1364 1558 0.238289 GTTGGCATCCTCGTTGTGTG 59.762 55.000 0.00 0.00 0.00 3.82
1436 1630 7.830099 AAGAATTGTGGAAGTTCTCAAGAAT 57.170 32.000 15.11 5.68 36.33 2.40
1437 1631 8.924511 AAGAATTGTGGAAGTTCTCAAGAATA 57.075 30.769 15.11 0.00 36.33 1.75
1438 1632 8.329203 AGAATTGTGGAAGTTCTCAAGAATAC 57.671 34.615 15.11 7.98 36.33 1.89
1439 1633 7.939039 AGAATTGTGGAAGTTCTCAAGAATACA 59.061 33.333 15.11 0.00 36.33 2.29
1440 1634 8.463930 AATTGTGGAAGTTCTCAAGAATACAA 57.536 30.769 15.11 0.00 36.33 2.41
1441 1635 7.496529 TTGTGGAAGTTCTCAAGAATACAAG 57.503 36.000 2.25 0.00 36.33 3.16
1442 1636 6.591935 TGTGGAAGTTCTCAAGAATACAAGT 58.408 36.000 2.25 0.00 36.33 3.16
1479 3125 6.805271 GCATTCCATTTCATGATATGTACTGC 59.195 38.462 20.40 17.27 0.00 4.40
1514 3380 4.712476 GTTGGTCTCTGAATATGCATCCT 58.288 43.478 0.19 0.00 0.00 3.24
1515 3381 5.128919 GTTGGTCTCTGAATATGCATCCTT 58.871 41.667 0.19 0.00 0.00 3.36
1516 3382 4.965814 TGGTCTCTGAATATGCATCCTTC 58.034 43.478 0.19 8.71 0.00 3.46
1517 3383 4.409901 TGGTCTCTGAATATGCATCCTTCA 59.590 41.667 18.46 18.46 0.00 3.02
1521 3387 7.118971 GGTCTCTGAATATGCATCCTTCATTAC 59.881 40.741 19.36 16.77 0.00 1.89
1554 3422 4.148128 ACTTCATTCGATTGGATCAGCT 57.852 40.909 7.42 0.00 0.00 4.24
1555 3423 4.125703 ACTTCATTCGATTGGATCAGCTC 58.874 43.478 7.42 0.00 0.00 4.09
1556 3424 3.825143 TCATTCGATTGGATCAGCTCA 57.175 42.857 7.42 0.00 0.00 4.26
1557 3425 3.725490 TCATTCGATTGGATCAGCTCAG 58.275 45.455 7.42 0.00 0.00 3.35
1558 3426 1.945387 TTCGATTGGATCAGCTCAGC 58.055 50.000 0.00 0.00 0.00 4.26
1595 3463 0.742505 CATGCATGGCCGTCTCAAAT 59.257 50.000 19.40 0.00 0.00 2.32
1606 3475 1.136000 CGTCTCAAATGCGTGCATTCA 60.136 47.619 19.40 9.24 44.86 2.57
1608 3477 1.878734 TCTCAAATGCGTGCATTCACA 59.121 42.857 19.40 6.69 44.86 3.58
1676 3637 4.151689 TCAAAATAGCTGTAACACGAGCAC 59.848 41.667 0.00 0.00 37.70 4.40
1688 3649 4.147219 ACACGAGCACATTAAGCTTTTC 57.853 40.909 3.20 0.00 43.58 2.29
1693 3654 6.521133 CACGAGCACATTAAGCTTTTCTTAAG 59.479 38.462 3.20 0.00 46.84 1.85
1694 3655 6.426937 ACGAGCACATTAAGCTTTTCTTAAGA 59.573 34.615 3.20 0.00 46.84 2.10
1726 3697 7.307042 CGACCAGATCAAGCTATACATGAAAAG 60.307 40.741 0.00 0.00 28.16 2.27
1784 4039 2.672961 TCCTGAAGATGGCAGTAACG 57.327 50.000 0.00 0.00 0.00 3.18
1806 4061 4.992688 GTTTCCACGATATTTTGGCATGA 58.007 39.130 0.00 0.00 32.37 3.07
1808 4063 5.651387 TTCCACGATATTTTGGCATGAAA 57.349 34.783 0.00 0.00 32.37 2.69
1809 4064 5.651387 TCCACGATATTTTGGCATGAAAA 57.349 34.783 0.00 0.00 32.37 2.29
1811 4066 5.184864 TCCACGATATTTTGGCATGAAAACT 59.815 36.000 0.00 0.00 32.37 2.66
1812 4067 5.868801 CCACGATATTTTGGCATGAAAACTT 59.131 36.000 0.00 0.00 0.00 2.66
1813 4068 6.183360 CCACGATATTTTGGCATGAAAACTTG 60.183 38.462 0.00 0.00 0.00 3.16
1814 4069 5.348451 ACGATATTTTGGCATGAAAACTTGC 59.652 36.000 0.00 0.00 0.00 4.01
1819 4074 6.932356 TTTTGGCATGAAAACTTGCAATAA 57.068 29.167 0.00 0.00 0.00 1.40
1820 4075 5.921004 TTGGCATGAAAACTTGCAATAAC 57.079 34.783 0.00 0.00 0.00 1.89
1822 4077 4.040217 TGGCATGAAAACTTGCAATAACCT 59.960 37.500 0.00 0.00 0.00 3.50
1823 4078 5.244851 TGGCATGAAAACTTGCAATAACCTA 59.755 36.000 0.00 0.00 0.00 3.08
1826 4081 6.644592 GCATGAAAACTTGCAATAACCTACAA 59.355 34.615 0.00 0.00 0.00 2.41
1827 4082 7.170658 GCATGAAAACTTGCAATAACCTACAAA 59.829 33.333 0.00 0.00 0.00 2.83
1830 4085 9.606631 TGAAAACTTGCAATAACCTACAAAATT 57.393 25.926 0.00 0.00 0.00 1.82
1835 4090 9.483916 ACTTGCAATAACCTACAAAATTTAACC 57.516 29.630 0.00 0.00 0.00 2.85
1836 4091 9.482627 CTTGCAATAACCTACAAAATTTAACCA 57.517 29.630 0.00 0.00 0.00 3.67
1838 4093 9.646427 TGCAATAACCTACAAAATTTAACCATC 57.354 29.630 0.00 0.00 0.00 3.51
1839 4094 9.869757 GCAATAACCTACAAAATTTAACCATCT 57.130 29.630 0.00 0.00 0.00 2.90
1845 4100 9.927668 ACCTACAAAATTTAACCATCTTTGATG 57.072 29.630 0.00 0.92 32.57 3.07
1846 4101 9.927668 CCTACAAAATTTAACCATCTTTGATGT 57.072 29.630 6.78 0.00 32.57 3.06
1849 4104 8.558700 ACAAAATTTAACCATCTTTGATGTTGC 58.441 29.630 6.78 0.00 32.57 4.17
1850 4105 8.557864 CAAAATTTAACCATCTTTGATGTTGCA 58.442 29.630 6.78 0.00 0.00 4.08
1851 4106 8.674263 AAATTTAACCATCTTTGATGTTGCAA 57.326 26.923 0.00 0.00 0.00 4.08
1852 4107 8.674263 AATTTAACCATCTTTGATGTTGCAAA 57.326 26.923 0.00 0.00 36.43 3.68
1863 4118 8.898983 CTTTGATGTTGCAAAGTTTCAAATTT 57.101 26.923 19.19 0.00 45.97 1.82
1864 4119 9.344309 CTTTGATGTTGCAAAGTTTCAAATTTT 57.656 25.926 19.19 0.00 45.97 1.82
1865 4120 9.688592 TTTGATGTTGCAAAGTTTCAAATTTTT 57.311 22.222 16.81 0.00 33.16 1.94
1911 4166 8.934023 TTTTGAATTTACTGTTCATAGAGGGT 57.066 30.769 0.00 0.00 35.68 4.34
1912 4167 7.921786 TTGAATTTACTGTTCATAGAGGGTG 57.078 36.000 0.00 0.00 35.68 4.61
1913 4168 5.880332 TGAATTTACTGTTCATAGAGGGTGC 59.120 40.000 0.00 0.00 31.07 5.01
1914 4169 3.906720 TTACTGTTCATAGAGGGTGCC 57.093 47.619 0.00 0.00 0.00 5.01
1915 4170 1.958288 ACTGTTCATAGAGGGTGCCT 58.042 50.000 0.00 0.00 36.03 4.75
1916 4171 3.116096 ACTGTTCATAGAGGGTGCCTA 57.884 47.619 0.00 0.00 31.76 3.93
1917 4172 3.034635 ACTGTTCATAGAGGGTGCCTAG 58.965 50.000 0.00 0.00 31.76 3.02
1918 4173 2.366916 CTGTTCATAGAGGGTGCCTAGG 59.633 54.545 3.67 3.67 31.76 3.02
1919 4174 1.070914 GTTCATAGAGGGTGCCTAGGC 59.929 57.143 27.71 27.71 42.35 3.93
1931 4186 3.854669 CTAGGCACCCGGGAGCTG 61.855 72.222 36.82 24.42 32.43 4.24
1932 4187 4.715130 TAGGCACCCGGGAGCTGT 62.715 66.667 36.82 27.32 32.43 4.40
1934 4189 2.808761 TAGGCACCCGGGAGCTGTTA 62.809 60.000 36.82 24.60 32.43 2.41
1935 4190 2.436115 GCACCCGGGAGCTGTTAC 60.436 66.667 32.83 5.42 0.00 2.50
1936 4191 3.065306 CACCCGGGAGCTGTTACA 58.935 61.111 32.02 0.00 0.00 2.41
1937 4192 1.375523 CACCCGGGAGCTGTTACAC 60.376 63.158 32.02 0.00 0.00 2.90
1938 4193 2.267961 CCCGGGAGCTGTTACACC 59.732 66.667 18.48 0.00 0.00 4.16
1939 4194 2.291043 CCCGGGAGCTGTTACACCT 61.291 63.158 18.48 0.00 0.00 4.00
1940 4195 1.677552 CCGGGAGCTGTTACACCTT 59.322 57.895 0.00 0.00 0.00 3.50
1941 4196 0.036306 CCGGGAGCTGTTACACCTTT 59.964 55.000 0.00 0.00 0.00 3.11
1942 4197 1.439679 CGGGAGCTGTTACACCTTTC 58.560 55.000 0.00 0.00 0.00 2.62
1943 4198 1.002087 CGGGAGCTGTTACACCTTTCT 59.998 52.381 0.00 0.00 0.00 2.52
1944 4199 2.427506 GGGAGCTGTTACACCTTTCTG 58.572 52.381 0.00 0.00 0.00 3.02
1951 4206 4.508861 GCTGTTACACCTTTCTGAAACGTA 59.491 41.667 0.00 0.00 0.00 3.57
1981 4236 5.758784 ACAAGTTACAAAGGAGTAGCTCAAC 59.241 40.000 0.00 0.00 34.95 3.18
2059 4314 0.611062 ATGTGCATGTGGAGCAGCTT 60.611 50.000 0.00 0.00 43.63 3.74
2093 4348 0.552615 GGGTATATGCCCCCATCCCT 60.553 60.000 17.79 0.00 42.89 4.20
2128 4383 5.397221 CCAATGTCTCTCTCTCTCTCTCTCT 60.397 48.000 0.00 0.00 0.00 3.10
2129 4384 5.543507 ATGTCTCTCTCTCTCTCTCTCTC 57.456 47.826 0.00 0.00 0.00 3.20
2130 4385 4.614475 TGTCTCTCTCTCTCTCTCTCTCT 58.386 47.826 0.00 0.00 0.00 3.10
2131 4386 4.646945 TGTCTCTCTCTCTCTCTCTCTCTC 59.353 50.000 0.00 0.00 0.00 3.20
2132 4387 4.892934 GTCTCTCTCTCTCTCTCTCTCTCT 59.107 50.000 0.00 0.00 0.00 3.10
2133 4388 5.009610 GTCTCTCTCTCTCTCTCTCTCTCTC 59.990 52.000 0.00 0.00 0.00 3.20
2134 4389 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2135 4390 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2136 4391 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2137 4392 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2138 4393 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2139 4394 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2140 4395 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2141 4396 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
2142 4397 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
2143 4398 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.968901 TGTGAAGGTACGGCGATCCT 60.969 55.000 16.62 17.57 0.00 3.24
4 5 0.804933 GTGTGAAGGTACGGCGATCC 60.805 60.000 16.62 15.40 0.00 3.36
5 6 0.804933 GGTGTGAAGGTACGGCGATC 60.805 60.000 16.62 5.64 0.00 3.69
7 8 2.652530 GGTGTGAAGGTACGGCGA 59.347 61.111 16.62 0.00 0.00 5.54
8 9 2.807895 CGGTGTGAAGGTACGGCG 60.808 66.667 4.80 4.80 0.00 6.46
9 10 3.116531 GCGGTGTGAAGGTACGGC 61.117 66.667 0.00 0.00 36.28 5.68
10 11 2.807895 CGCGGTGTGAAGGTACGG 60.808 66.667 0.00 0.00 0.00 4.02
11 12 2.084681 GTCGCGGTGTGAAGGTACG 61.085 63.158 6.13 0.00 0.00 3.67
12 13 0.598158 TTGTCGCGGTGTGAAGGTAC 60.598 55.000 6.13 0.00 0.00 3.34
13 14 0.319083 ATTGTCGCGGTGTGAAGGTA 59.681 50.000 6.13 0.00 0.00 3.08
14 15 0.319083 TATTGTCGCGGTGTGAAGGT 59.681 50.000 6.13 0.00 0.00 3.50
15 16 0.719465 GTATTGTCGCGGTGTGAAGG 59.281 55.000 6.13 0.00 0.00 3.46
16 17 1.126113 GTGTATTGTCGCGGTGTGAAG 59.874 52.381 6.13 0.00 0.00 3.02
17 18 1.141645 GTGTATTGTCGCGGTGTGAA 58.858 50.000 6.13 0.00 0.00 3.18
18 19 0.668096 GGTGTATTGTCGCGGTGTGA 60.668 55.000 6.13 0.00 0.00 3.58
19 20 1.785321 GGTGTATTGTCGCGGTGTG 59.215 57.895 6.13 0.00 0.00 3.82
20 21 1.735198 CGGTGTATTGTCGCGGTGT 60.735 57.895 6.13 0.00 0.00 4.16
21 22 2.449525 CCGGTGTATTGTCGCGGTG 61.450 63.158 6.13 0.00 0.00 4.94
22 23 1.952102 ATCCGGTGTATTGTCGCGGT 61.952 55.000 6.13 0.00 0.00 5.68
23 24 1.227147 ATCCGGTGTATTGTCGCGG 60.227 57.895 6.13 0.00 0.00 6.46
24 25 0.804544 ACATCCGGTGTATTGTCGCG 60.805 55.000 0.00 0.00 39.91 5.87
25 26 1.365699 AACATCCGGTGTATTGTCGC 58.634 50.000 0.00 0.00 41.14 5.19
26 27 5.498159 CATTAAACATCCGGTGTATTGTCG 58.502 41.667 0.00 0.00 41.14 4.35
27 28 5.732247 GCCATTAAACATCCGGTGTATTGTC 60.732 44.000 0.00 0.00 41.14 3.18
28 29 4.097286 GCCATTAAACATCCGGTGTATTGT 59.903 41.667 0.00 0.00 41.14 2.71
29 30 4.499019 GGCCATTAAACATCCGGTGTATTG 60.499 45.833 0.00 2.32 41.14 1.90
30 31 3.634910 GGCCATTAAACATCCGGTGTATT 59.365 43.478 0.00 5.77 41.14 1.89
31 32 3.117663 AGGCCATTAAACATCCGGTGTAT 60.118 43.478 5.01 0.00 41.14 2.29
32 33 2.240160 AGGCCATTAAACATCCGGTGTA 59.760 45.455 5.01 0.00 41.14 2.90
33 34 1.005450 AGGCCATTAAACATCCGGTGT 59.995 47.619 5.01 2.11 44.84 4.16
34 35 1.762708 AGGCCATTAAACATCCGGTG 58.237 50.000 5.01 1.37 0.00 4.94
35 36 2.525105 AAGGCCATTAAACATCCGGT 57.475 45.000 5.01 0.00 0.00 5.28
36 37 2.100749 GGAAAGGCCATTAAACATCCGG 59.899 50.000 5.01 0.00 36.34 5.14
37 38 2.223479 CGGAAAGGCCATTAAACATCCG 60.223 50.000 5.01 3.44 42.01 4.18
38 39 3.020984 TCGGAAAGGCCATTAAACATCC 58.979 45.455 5.01 0.00 35.94 3.51
39 40 3.489229 GCTCGGAAAGGCCATTAAACATC 60.489 47.826 5.01 0.00 35.94 3.06
40 41 2.427095 GCTCGGAAAGGCCATTAAACAT 59.573 45.455 5.01 0.00 35.94 2.71
41 42 1.816224 GCTCGGAAAGGCCATTAAACA 59.184 47.619 5.01 0.00 35.94 2.83
42 43 1.816224 TGCTCGGAAAGGCCATTAAAC 59.184 47.619 5.01 0.00 35.94 2.01
43 44 1.816224 GTGCTCGGAAAGGCCATTAAA 59.184 47.619 5.01 0.00 35.94 1.52
44 45 1.459450 GTGCTCGGAAAGGCCATTAA 58.541 50.000 5.01 0.00 35.94 1.40
45 46 0.393808 GGTGCTCGGAAAGGCCATTA 60.394 55.000 5.01 0.00 35.94 1.90
46 47 1.678970 GGTGCTCGGAAAGGCCATT 60.679 57.895 5.01 0.00 35.94 3.16
47 48 2.044946 GGTGCTCGGAAAGGCCAT 60.045 61.111 5.01 0.00 35.94 4.40
48 49 4.697756 CGGTGCTCGGAAAGGCCA 62.698 66.667 5.01 0.00 35.94 5.36
49 50 3.771945 TATTCGGTGCTCGGAAAGGCC 62.772 57.143 11.99 0.00 39.77 5.19
50 51 0.461339 TATTCGGTGCTCGGAAAGGC 60.461 55.000 11.99 0.00 39.77 4.35
51 52 2.240493 ATATTCGGTGCTCGGAAAGG 57.760 50.000 11.99 0.00 39.77 3.11
52 53 3.978687 ACTATATTCGGTGCTCGGAAAG 58.021 45.455 11.99 8.28 39.77 2.62
53 54 3.635373 AGACTATATTCGGTGCTCGGAAA 59.365 43.478 11.99 3.95 39.77 3.13
54 55 3.004419 CAGACTATATTCGGTGCTCGGAA 59.996 47.826 10.62 10.62 39.77 4.30
55 56 2.552743 CAGACTATATTCGGTGCTCGGA 59.447 50.000 0.70 0.00 39.77 4.55
56 57 2.922758 GCAGACTATATTCGGTGCTCGG 60.923 54.545 0.70 0.00 39.77 4.63
57 58 2.287608 TGCAGACTATATTCGGTGCTCG 60.288 50.000 6.08 0.00 40.90 5.03
58 59 3.053455 GTGCAGACTATATTCGGTGCTC 58.947 50.000 0.00 0.49 0.00 4.26
59 60 2.430694 TGTGCAGACTATATTCGGTGCT 59.569 45.455 0.00 0.00 0.00 4.40
60 61 2.821546 TGTGCAGACTATATTCGGTGC 58.178 47.619 0.00 0.00 0.00 5.01
61 62 4.209911 CACATGTGCAGACTATATTCGGTG 59.790 45.833 13.94 0.00 0.00 4.94
62 63 4.141937 ACACATGTGCAGACTATATTCGGT 60.142 41.667 25.68 0.00 0.00 4.69
63 64 4.209911 CACACATGTGCAGACTATATTCGG 59.790 45.833 25.68 0.00 39.39 4.30
64 65 4.209911 CCACACATGTGCAGACTATATTCG 59.790 45.833 25.68 0.00 44.34 3.34
65 66 4.024556 GCCACACATGTGCAGACTATATTC 60.025 45.833 25.68 0.00 44.34 1.75
66 67 3.879295 GCCACACATGTGCAGACTATATT 59.121 43.478 25.68 0.00 44.34 1.28
67 68 3.470709 GCCACACATGTGCAGACTATAT 58.529 45.455 25.68 0.00 44.34 0.86
68 69 2.419990 GGCCACACATGTGCAGACTATA 60.420 50.000 25.68 0.00 44.34 1.31
69 70 1.679944 GGCCACACATGTGCAGACTAT 60.680 52.381 25.68 0.98 44.34 2.12
70 71 0.321564 GGCCACACATGTGCAGACTA 60.322 55.000 25.68 0.00 44.34 2.59
71 72 1.601759 GGCCACACATGTGCAGACT 60.602 57.895 25.68 2.60 44.34 3.24
72 73 2.956987 GGCCACACATGTGCAGAC 59.043 61.111 25.68 15.49 44.34 3.51
73 74 2.669229 CGGCCACACATGTGCAGA 60.669 61.111 25.68 0.00 44.34 4.26
74 75 3.740397 CCGGCCACACATGTGCAG 61.740 66.667 25.68 17.49 44.34 4.41
75 76 4.577677 ACCGGCCACACATGTGCA 62.578 61.111 25.68 0.00 44.34 4.57
76 77 2.362329 AAAACCGGCCACACATGTGC 62.362 55.000 25.68 11.93 44.34 4.57
77 78 0.955178 TAAAACCGGCCACACATGTG 59.045 50.000 24.25 24.25 45.23 3.21
78 79 1.543802 CATAAAACCGGCCACACATGT 59.456 47.619 0.00 0.00 0.00 3.21
79 80 1.543802 ACATAAAACCGGCCACACATG 59.456 47.619 0.00 0.18 0.00 3.21
80 81 1.917872 ACATAAAACCGGCCACACAT 58.082 45.000 0.00 0.00 0.00 3.21
81 82 1.693627 AACATAAAACCGGCCACACA 58.306 45.000 0.00 0.00 0.00 3.72
82 83 2.804697 AAACATAAAACCGGCCACAC 57.195 45.000 0.00 0.00 0.00 3.82
83 84 2.036089 GGAAAACATAAAACCGGCCACA 59.964 45.455 0.00 0.00 0.00 4.17
84 85 2.036089 TGGAAAACATAAAACCGGCCAC 59.964 45.455 0.00 0.00 0.00 5.01
85 86 2.317040 TGGAAAACATAAAACCGGCCA 58.683 42.857 0.00 0.00 0.00 5.36
86 87 3.517602 GATGGAAAACATAAAACCGGCC 58.482 45.455 0.00 0.00 40.72 6.13
87 88 3.175929 CGATGGAAAACATAAAACCGGC 58.824 45.455 0.00 0.00 40.72 6.13
88 89 4.162812 CACGATGGAAAACATAAAACCGG 58.837 43.478 0.00 0.00 40.72 5.28
89 90 3.606346 GCACGATGGAAAACATAAAACCG 59.394 43.478 0.00 0.00 40.72 4.44
90 91 4.384547 GTGCACGATGGAAAACATAAAACC 59.615 41.667 0.00 0.00 40.72 3.27
91 92 5.116983 CAGTGCACGATGGAAAACATAAAAC 59.883 40.000 12.01 0.00 40.72 2.43
92 93 5.218885 CAGTGCACGATGGAAAACATAAAA 58.781 37.500 12.01 0.00 40.72 1.52
93 94 4.277174 ACAGTGCACGATGGAAAACATAAA 59.723 37.500 12.01 0.00 40.72 1.40
94 95 3.818210 ACAGTGCACGATGGAAAACATAA 59.182 39.130 12.01 0.00 40.72 1.90
95 96 3.407698 ACAGTGCACGATGGAAAACATA 58.592 40.909 12.01 0.00 40.72 2.29
96 97 2.229792 ACAGTGCACGATGGAAAACAT 58.770 42.857 12.01 0.00 44.18 2.71
97 98 1.674359 ACAGTGCACGATGGAAAACA 58.326 45.000 12.01 0.00 0.00 2.83
98 99 2.223479 ACAACAGTGCACGATGGAAAAC 60.223 45.455 12.01 0.00 0.00 2.43
99 100 2.020720 ACAACAGTGCACGATGGAAAA 58.979 42.857 12.01 0.00 0.00 2.29
100 101 1.674359 ACAACAGTGCACGATGGAAA 58.326 45.000 12.01 0.00 0.00 3.13
101 102 1.674359 AACAACAGTGCACGATGGAA 58.326 45.000 12.01 0.00 0.00 3.53
102 103 1.674359 AAACAACAGTGCACGATGGA 58.326 45.000 12.01 0.00 0.00 3.41
103 104 2.118683 CAAAACAACAGTGCACGATGG 58.881 47.619 12.01 3.56 0.00 3.51
104 105 1.518102 GCAAAACAACAGTGCACGATG 59.482 47.619 12.01 13.91 38.19 3.84
105 106 1.838913 GCAAAACAACAGTGCACGAT 58.161 45.000 12.01 0.00 38.19 3.73
106 107 0.522286 CGCAAAACAACAGTGCACGA 60.522 50.000 12.01 0.00 38.19 4.35
107 108 0.522286 TCGCAAAACAACAGTGCACG 60.522 50.000 12.01 9.15 38.19 5.34
108 109 1.838913 ATCGCAAAACAACAGTGCAC 58.161 45.000 9.40 9.40 38.19 4.57
109 110 2.575694 AATCGCAAAACAACAGTGCA 57.424 40.000 0.00 0.00 38.19 4.57
110 111 2.400408 CGTAATCGCAAAACAACAGTGC 59.600 45.455 0.00 0.00 34.87 4.40
111 112 2.970609 CCGTAATCGCAAAACAACAGTG 59.029 45.455 0.00 0.00 35.54 3.66
112 113 2.614983 ACCGTAATCGCAAAACAACAGT 59.385 40.909 0.00 0.00 35.54 3.55
113 114 3.262135 ACCGTAATCGCAAAACAACAG 57.738 42.857 0.00 0.00 35.54 3.16
114 115 3.694535 AACCGTAATCGCAAAACAACA 57.305 38.095 0.00 0.00 35.54 3.33
115 116 4.029750 GCATAACCGTAATCGCAAAACAAC 59.970 41.667 0.00 0.00 35.54 3.32
116 117 4.083217 AGCATAACCGTAATCGCAAAACAA 60.083 37.500 0.00 0.00 35.54 2.83
117 118 3.437395 AGCATAACCGTAATCGCAAAACA 59.563 39.130 0.00 0.00 35.54 2.83
118 119 4.011058 AGCATAACCGTAATCGCAAAAC 57.989 40.909 0.00 0.00 35.54 2.43
119 120 4.407818 CAAGCATAACCGTAATCGCAAAA 58.592 39.130 0.00 0.00 35.54 2.44
120 121 3.729462 GCAAGCATAACCGTAATCGCAAA 60.729 43.478 0.00 0.00 35.54 3.68
121 122 2.223157 GCAAGCATAACCGTAATCGCAA 60.223 45.455 0.00 0.00 35.54 4.85
122 123 1.329292 GCAAGCATAACCGTAATCGCA 59.671 47.619 0.00 0.00 35.54 5.10
123 124 1.597663 AGCAAGCATAACCGTAATCGC 59.402 47.619 0.00 0.00 35.54 4.58
124 125 2.863740 TCAGCAAGCATAACCGTAATCG 59.136 45.455 0.00 0.00 0.00 3.34
125 126 4.332819 ACTTCAGCAAGCATAACCGTAATC 59.667 41.667 0.00 0.00 32.09 1.75
126 127 4.261801 ACTTCAGCAAGCATAACCGTAAT 58.738 39.130 0.00 0.00 32.09 1.89
127 128 3.670625 ACTTCAGCAAGCATAACCGTAA 58.329 40.909 0.00 0.00 32.09 3.18
128 129 3.328382 ACTTCAGCAAGCATAACCGTA 57.672 42.857 0.00 0.00 32.09 4.02
129 130 2.185004 ACTTCAGCAAGCATAACCGT 57.815 45.000 0.00 0.00 32.09 4.83
130 131 3.435327 TGTAACTTCAGCAAGCATAACCG 59.565 43.478 0.00 0.00 32.09 4.44
131 132 5.181245 TCTTGTAACTTCAGCAAGCATAACC 59.819 40.000 0.00 0.00 39.36 2.85
132 133 6.073003 AGTCTTGTAACTTCAGCAAGCATAAC 60.073 38.462 0.00 0.00 39.36 1.89
133 134 5.997746 AGTCTTGTAACTTCAGCAAGCATAA 59.002 36.000 0.00 0.00 39.36 1.90
134 135 5.551233 AGTCTTGTAACTTCAGCAAGCATA 58.449 37.500 0.00 0.00 39.36 3.14
135 136 4.392940 AGTCTTGTAACTTCAGCAAGCAT 58.607 39.130 0.00 0.00 39.36 3.79
136 137 3.808728 AGTCTTGTAACTTCAGCAAGCA 58.191 40.909 0.00 0.00 39.36 3.91
137 138 4.035675 ACAAGTCTTGTAACTTCAGCAAGC 59.964 41.667 16.74 0.00 43.27 4.01
138 139 5.741388 ACAAGTCTTGTAACTTCAGCAAG 57.259 39.130 16.74 0.00 43.27 4.01
139 140 7.497579 TCATAACAAGTCTTGTAACTTCAGCAA 59.502 33.333 18.45 0.00 44.59 3.91
140 141 6.989759 TCATAACAAGTCTTGTAACTTCAGCA 59.010 34.615 18.45 0.00 44.59 4.41
141 142 7.421530 TCATAACAAGTCTTGTAACTTCAGC 57.578 36.000 18.45 0.00 44.59 4.26
142 143 9.208022 TGATCATAACAAGTCTTGTAACTTCAG 57.792 33.333 18.45 5.51 44.59 3.02
143 144 9.208022 CTGATCATAACAAGTCTTGTAACTTCA 57.792 33.333 18.45 15.21 44.59 3.02
144 145 8.171840 GCTGATCATAACAAGTCTTGTAACTTC 58.828 37.037 18.45 12.01 44.59 3.01
145 146 7.880195 AGCTGATCATAACAAGTCTTGTAACTT 59.120 33.333 18.45 5.81 44.59 2.66
146 147 7.390027 AGCTGATCATAACAAGTCTTGTAACT 58.610 34.615 18.45 6.17 44.59 2.24
147 148 7.331934 TGAGCTGATCATAACAAGTCTTGTAAC 59.668 37.037 18.45 2.97 36.41 2.50
148 149 7.386059 TGAGCTGATCATAACAAGTCTTGTAA 58.614 34.615 18.45 5.70 36.41 2.41
149 150 6.935167 TGAGCTGATCATAACAAGTCTTGTA 58.065 36.000 18.45 3.55 36.41 2.41
150 151 5.798132 TGAGCTGATCATAACAAGTCTTGT 58.202 37.500 12.62 12.62 38.17 3.16
151 152 6.104665 TCTGAGCTGATCATAACAAGTCTTG 58.895 40.000 11.17 11.17 37.28 3.02
152 153 6.154192 TCTCTGAGCTGATCATAACAAGTCTT 59.846 38.462 0.00 0.00 37.28 3.01
153 154 5.655974 TCTCTGAGCTGATCATAACAAGTCT 59.344 40.000 0.00 0.00 37.28 3.24
154 155 5.900425 TCTCTGAGCTGATCATAACAAGTC 58.100 41.667 0.00 0.00 37.28 3.01
155 156 5.929058 TCTCTGAGCTGATCATAACAAGT 57.071 39.130 0.00 0.00 37.28 3.16
156 157 9.491675 AATTATCTCTGAGCTGATCATAACAAG 57.508 33.333 0.00 0.00 37.28 3.16
157 158 9.486497 GAATTATCTCTGAGCTGATCATAACAA 57.514 33.333 0.00 0.00 37.28 2.83
158 159 8.093307 GGAATTATCTCTGAGCTGATCATAACA 58.907 37.037 0.00 0.00 37.28 2.41
159 160 7.548780 GGGAATTATCTCTGAGCTGATCATAAC 59.451 40.741 0.00 0.00 37.28 1.89
160 161 7.236225 TGGGAATTATCTCTGAGCTGATCATAA 59.764 37.037 0.00 0.00 37.28 1.90
161 162 6.727697 TGGGAATTATCTCTGAGCTGATCATA 59.272 38.462 0.00 0.00 37.28 2.15
162 163 5.546887 TGGGAATTATCTCTGAGCTGATCAT 59.453 40.000 0.00 0.00 37.28 2.45
163 164 4.903649 TGGGAATTATCTCTGAGCTGATCA 59.096 41.667 0.00 0.00 36.21 2.92
164 165 5.480642 TGGGAATTATCTCTGAGCTGATC 57.519 43.478 0.00 0.00 0.00 2.92
165 166 5.045724 GGATGGGAATTATCTCTGAGCTGAT 60.046 44.000 0.00 0.00 0.00 2.90
166 167 4.285517 GGATGGGAATTATCTCTGAGCTGA 59.714 45.833 0.00 0.00 0.00 4.26
167 168 4.565236 GGGATGGGAATTATCTCTGAGCTG 60.565 50.000 0.00 0.00 0.00 4.24
168 169 3.586618 GGGATGGGAATTATCTCTGAGCT 59.413 47.826 0.00 0.00 0.00 4.09
169 170 3.308046 GGGGATGGGAATTATCTCTGAGC 60.308 52.174 0.00 0.00 0.00 4.26
170 171 3.912528 TGGGGATGGGAATTATCTCTGAG 59.087 47.826 0.00 0.00 0.00 3.35
171 172 3.912528 CTGGGGATGGGAATTATCTCTGA 59.087 47.826 0.00 0.00 0.00 3.27
172 173 3.560882 GCTGGGGATGGGAATTATCTCTG 60.561 52.174 0.00 0.00 0.00 3.35
173 174 2.646798 GCTGGGGATGGGAATTATCTCT 59.353 50.000 0.00 0.00 0.00 3.10
174 175 2.291217 GGCTGGGGATGGGAATTATCTC 60.291 54.545 0.00 0.00 0.00 2.75
175 176 1.713078 GGCTGGGGATGGGAATTATCT 59.287 52.381 0.00 0.00 0.00 1.98
176 177 1.272704 GGGCTGGGGATGGGAATTATC 60.273 57.143 0.00 0.00 0.00 1.75
177 178 0.786435 GGGCTGGGGATGGGAATTAT 59.214 55.000 0.00 0.00 0.00 1.28
178 179 0.329434 AGGGCTGGGGATGGGAATTA 60.329 55.000 0.00 0.00 0.00 1.40
179 180 1.626826 AGGGCTGGGGATGGGAATT 60.627 57.895 0.00 0.00 0.00 2.17
180 181 2.046855 AGGGCTGGGGATGGGAAT 59.953 61.111 0.00 0.00 0.00 3.01
181 182 2.696125 GAGGGCTGGGGATGGGAA 60.696 66.667 0.00 0.00 0.00 3.97
201 202 1.738908 TCGATGGTGTGCATCACAATG 59.261 47.619 17.34 9.30 46.28 2.82
202 203 1.739466 GTCGATGGTGTGCATCACAAT 59.261 47.619 17.34 13.14 46.28 2.71
203 204 1.155889 GTCGATGGTGTGCATCACAA 58.844 50.000 17.34 9.54 46.28 3.33
205 206 0.391661 AGGTCGATGGTGTGCATCAC 60.392 55.000 9.96 9.96 45.47 3.06
206 207 0.391528 CAGGTCGATGGTGTGCATCA 60.392 55.000 0.00 0.00 0.00 3.07
207 208 1.709147 GCAGGTCGATGGTGTGCATC 61.709 60.000 0.00 0.00 34.18 3.91
208 209 1.746615 GCAGGTCGATGGTGTGCAT 60.747 57.895 0.00 0.00 34.18 3.96
209 210 2.358615 GCAGGTCGATGGTGTGCA 60.359 61.111 0.00 0.00 34.18 4.57
210 211 0.461870 TATGCAGGTCGATGGTGTGC 60.462 55.000 0.00 0.00 34.62 4.57
211 212 1.869132 CATATGCAGGTCGATGGTGTG 59.131 52.381 0.00 0.00 0.00 3.82
212 213 1.811558 GCATATGCAGGTCGATGGTGT 60.812 52.381 22.84 0.00 41.59 4.16
213 214 0.870393 GCATATGCAGGTCGATGGTG 59.130 55.000 22.84 0.00 41.59 4.17
214 215 3.312404 GCATATGCAGGTCGATGGT 57.688 52.632 22.84 0.00 41.59 3.55
225 226 1.303309 GTGAGGTGAGGTGCATATGC 58.697 55.000 21.09 21.09 42.50 3.14
226 227 1.807755 CGGTGAGGTGAGGTGCATATG 60.808 57.143 0.00 0.00 0.00 1.78
227 228 0.465705 CGGTGAGGTGAGGTGCATAT 59.534 55.000 0.00 0.00 0.00 1.78
228 229 1.613317 CCGGTGAGGTGAGGTGCATA 61.613 60.000 0.00 0.00 34.51 3.14
229 230 2.665000 CGGTGAGGTGAGGTGCAT 59.335 61.111 0.00 0.00 0.00 3.96
230 231 3.625897 CCGGTGAGGTGAGGTGCA 61.626 66.667 0.00 0.00 34.51 4.57
231 232 2.788191 CTTCCGGTGAGGTGAGGTGC 62.788 65.000 0.00 0.00 41.99 5.01
232 233 1.185618 TCTTCCGGTGAGGTGAGGTG 61.186 60.000 0.00 0.00 41.99 4.00
233 234 0.471211 TTCTTCCGGTGAGGTGAGGT 60.471 55.000 0.00 0.00 41.99 3.85
234 235 0.685097 TTTCTTCCGGTGAGGTGAGG 59.315 55.000 0.00 0.00 41.99 3.86
235 236 2.143925 GTTTTCTTCCGGTGAGGTGAG 58.856 52.381 0.00 0.00 41.99 3.51
236 237 1.766496 AGTTTTCTTCCGGTGAGGTGA 59.234 47.619 0.00 0.00 41.99 4.02
237 238 1.873591 CAGTTTTCTTCCGGTGAGGTG 59.126 52.381 0.00 0.00 41.99 4.00
238 239 1.766496 TCAGTTTTCTTCCGGTGAGGT 59.234 47.619 0.00 0.00 41.99 3.85
239 240 2.543777 TCAGTTTTCTTCCGGTGAGG 57.456 50.000 0.00 0.00 42.97 3.86
240 241 2.744202 CCATCAGTTTTCTTCCGGTGAG 59.256 50.000 0.00 0.66 0.00 3.51
241 242 2.105821 ACCATCAGTTTTCTTCCGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
242 243 2.226437 CACCATCAGTTTTCTTCCGGTG 59.774 50.000 0.00 0.00 35.09 4.94
243 244 2.105821 TCACCATCAGTTTTCTTCCGGT 59.894 45.455 0.00 0.00 0.00 5.28
244 245 2.778299 TCACCATCAGTTTTCTTCCGG 58.222 47.619 0.00 0.00 0.00 5.14
245 246 5.376854 AATTCACCATCAGTTTTCTTCCG 57.623 39.130 0.00 0.00 0.00 4.30
302 303 4.202233 TGCATCAGATTTAGGAGCTCTCTG 60.202 45.833 19.04 19.04 35.71 3.35
304 305 4.333913 TGCATCAGATTTAGGAGCTCTC 57.666 45.455 14.64 2.45 0.00 3.20
312 313 5.066117 ACACATGAGCTTGCATCAGATTTAG 59.934 40.000 0.00 0.00 0.00 1.85
326 327 5.105716 CCTGTAAGTAGTACACACATGAGCT 60.106 44.000 0.00 0.00 37.81 4.09
360 415 7.067859 CAGTGTGTTCCATTCCATGAGAAATAT 59.932 37.037 0.00 0.00 38.21 1.28
361 416 6.375174 CAGTGTGTTCCATTCCATGAGAAATA 59.625 38.462 0.00 0.00 38.21 1.40
371 426 4.615912 GCATTGTACAGTGTGTTCCATTCC 60.616 45.833 18.35 0.00 0.00 3.01
372 427 4.216257 AGCATTGTACAGTGTGTTCCATTC 59.784 41.667 18.35 0.39 0.00 2.67
373 428 4.022935 CAGCATTGTACAGTGTGTTCCATT 60.023 41.667 18.35 0.00 0.00 3.16
374 429 3.503363 CAGCATTGTACAGTGTGTTCCAT 59.497 43.478 18.35 0.00 0.00 3.41
375 430 2.877786 CAGCATTGTACAGTGTGTTCCA 59.122 45.455 18.35 0.00 0.00 3.53
384 439 2.941064 CTGGTGGATCAGCATTGTACAG 59.059 50.000 0.00 0.00 41.09 2.74
394 449 2.002586 CGTGTTAAGCTGGTGGATCAG 58.997 52.381 0.00 0.00 37.79 2.90
396 451 2.271800 CTCGTGTTAAGCTGGTGGATC 58.728 52.381 0.00 0.00 0.00 3.36
397 452 1.676014 GCTCGTGTTAAGCTGGTGGAT 60.676 52.381 0.00 0.00 36.80 3.41
398 453 0.320421 GCTCGTGTTAAGCTGGTGGA 60.320 55.000 0.00 0.00 36.80 4.02
403 458 2.993220 TGTATGTGCTCGTGTTAAGCTG 59.007 45.455 0.00 0.00 40.50 4.24
404 459 3.313012 TGTATGTGCTCGTGTTAAGCT 57.687 42.857 0.00 0.00 40.50 3.74
405 460 5.907197 ATATGTATGTGCTCGTGTTAAGC 57.093 39.130 0.00 0.00 40.26 3.09
407 462 9.414295 GGTTATATATGTATGTGCTCGTGTTAA 57.586 33.333 0.00 0.00 0.00 2.01
408 463 7.751793 CGGTTATATATGTATGTGCTCGTGTTA 59.248 37.037 0.00 0.00 0.00 2.41
413 480 4.204370 CGCGGTTATATATGTATGTGCTCG 59.796 45.833 0.00 0.00 0.00 5.03
422 489 3.943381 TCGGATCTCGCGGTTATATATGT 59.057 43.478 6.13 0.00 39.05 2.29
493 564 2.033448 TGGGGTTCATCCGTGTGC 59.967 61.111 0.00 0.00 37.00 4.57
494 565 2.040544 GCTGGGGTTCATCCGTGTG 61.041 63.158 0.00 0.00 37.00 3.82
495 566 2.224159 AGCTGGGGTTCATCCGTGT 61.224 57.895 0.00 0.00 37.00 4.49
496 567 1.746615 CAGCTGGGGTTCATCCGTG 60.747 63.158 5.57 0.00 37.00 4.94
543 614 0.179073 GTGATACAGATGCACGGCCT 60.179 55.000 0.00 0.00 0.00 5.19
557 628 2.994143 GAATCGTCGGCCGCGTGATA 62.994 60.000 30.84 18.33 36.19 2.15
751 856 1.673400 TCGCGATTTGAGAGAGAGAGG 59.327 52.381 3.71 0.00 0.00 3.69
753 858 2.945668 TGATCGCGATTTGAGAGAGAGA 59.054 45.455 24.55 0.00 0.00 3.10
754 859 3.042189 GTGATCGCGATTTGAGAGAGAG 58.958 50.000 24.55 0.00 0.00 3.20
755 860 2.223595 GGTGATCGCGATTTGAGAGAGA 60.224 50.000 24.55 0.00 0.00 3.10
756 861 2.123342 GGTGATCGCGATTTGAGAGAG 58.877 52.381 24.55 0.00 0.00 3.20
757 862 1.533965 CGGTGATCGCGATTTGAGAGA 60.534 52.381 24.55 0.00 0.00 3.10
758 863 0.848942 CGGTGATCGCGATTTGAGAG 59.151 55.000 24.55 9.22 0.00 3.20
759 864 0.527600 CCGGTGATCGCGATTTGAGA 60.528 55.000 24.55 2.37 37.59 3.27
760 865 1.490693 CCCGGTGATCGCGATTTGAG 61.491 60.000 24.55 14.75 37.59 3.02
761 866 1.520564 CCCGGTGATCGCGATTTGA 60.521 57.895 24.55 7.70 37.59 2.69
762 867 1.366111 AACCCGGTGATCGCGATTTG 61.366 55.000 24.55 12.78 37.59 2.32
763 868 0.176219 TAACCCGGTGATCGCGATTT 59.824 50.000 24.55 13.75 37.59 2.17
764 869 0.391597 ATAACCCGGTGATCGCGATT 59.608 50.000 24.55 7.85 37.59 3.34
765 870 0.391597 AATAACCCGGTGATCGCGAT 59.608 50.000 23.97 23.97 37.59 4.58
768 873 2.993899 CTCATAATAACCCGGTGATCGC 59.006 50.000 0.00 0.00 37.59 4.58
783 888 5.934043 ACTTGCGCATATCATAAGCTCATAA 59.066 36.000 12.75 0.00 0.00 1.90
784 889 5.482006 ACTTGCGCATATCATAAGCTCATA 58.518 37.500 12.75 0.00 0.00 2.15
785 890 4.321718 ACTTGCGCATATCATAAGCTCAT 58.678 39.130 12.75 0.00 0.00 2.90
786 891 3.732212 ACTTGCGCATATCATAAGCTCA 58.268 40.909 12.75 0.00 0.00 4.26
787 892 4.328440 CCTACTTGCGCATATCATAAGCTC 59.672 45.833 12.75 0.00 0.00 4.09
817 926 3.011517 GCTGGGAGAGAGGGGCAA 61.012 66.667 0.00 0.00 0.00 4.52
889 1009 0.594602 CATCTGCTGTGTGGTTGTGG 59.405 55.000 0.00 0.00 0.00 4.17
890 1010 1.534163 CTCATCTGCTGTGTGGTTGTG 59.466 52.381 0.00 0.00 0.00 3.33
891 1011 1.888215 CTCATCTGCTGTGTGGTTGT 58.112 50.000 0.00 0.00 0.00 3.32
892 1012 0.520404 GCTCATCTGCTGTGTGGTTG 59.480 55.000 0.00 0.00 0.00 3.77
893 1013 0.109153 TGCTCATCTGCTGTGTGGTT 59.891 50.000 0.00 0.00 0.00 3.67
894 1014 0.321387 CTGCTCATCTGCTGTGTGGT 60.321 55.000 0.00 0.00 0.00 4.16
1006 1126 1.171308 CCATGGCTCTTCACCTTGTG 58.829 55.000 0.00 0.00 31.96 3.33
1288 1482 1.139853 CAGGACTTAGGATGGAGCACC 59.860 57.143 0.00 0.00 0.00 5.01
1289 1483 1.474143 GCAGGACTTAGGATGGAGCAC 60.474 57.143 0.00 0.00 0.00 4.40
1290 1484 0.833287 GCAGGACTTAGGATGGAGCA 59.167 55.000 0.00 0.00 0.00 4.26
1436 1630 6.945435 TGGAATGCCAAGAGATAAAACTTGTA 59.055 34.615 0.00 0.00 42.49 2.41
1437 1631 5.774690 TGGAATGCCAAGAGATAAAACTTGT 59.225 36.000 0.00 0.00 42.49 3.16
1438 1632 6.271488 TGGAATGCCAAGAGATAAAACTTG 57.729 37.500 0.00 0.00 42.49 3.16
1479 3125 1.134580 AGACCAACGATCATGCTCCAG 60.135 52.381 0.00 0.00 0.00 3.86
1514 3380 4.771590 AGTACGAACACTCCGTAATGAA 57.228 40.909 0.00 0.00 43.00 2.57
1515 3381 4.216042 TGAAGTACGAACACTCCGTAATGA 59.784 41.667 0.00 0.00 43.00 2.57
1516 3382 4.478699 TGAAGTACGAACACTCCGTAATG 58.521 43.478 0.00 0.00 43.00 1.90
1517 3383 4.771590 TGAAGTACGAACACTCCGTAAT 57.228 40.909 0.00 0.00 43.00 1.89
1521 3387 2.592897 CGAATGAAGTACGAACACTCCG 59.407 50.000 0.00 0.00 0.00 4.63
1554 3422 1.028130 TGTGAAATTGTTGGCGCTGA 58.972 45.000 7.64 0.00 0.00 4.26
1555 3423 1.130955 GTGTGAAATTGTTGGCGCTG 58.869 50.000 7.64 0.00 0.00 5.18
1556 3424 0.743688 TGTGTGAAATTGTTGGCGCT 59.256 45.000 7.64 0.00 0.00 5.92
1557 3425 0.852136 GTGTGTGAAATTGTTGGCGC 59.148 50.000 0.00 0.00 0.00 6.53
1558 3426 2.200792 TGTGTGTGAAATTGTTGGCG 57.799 45.000 0.00 0.00 0.00 5.69
1606 3475 1.595466 TGCCGGTAACACGAATTTGT 58.405 45.000 1.90 0.00 35.47 2.83
1608 3477 2.482721 CTCTTGCCGGTAACACGAATTT 59.517 45.455 0.00 0.00 35.47 1.82
1688 3649 6.401581 GCTTGATCTGGTCGTTCTTTCTTAAG 60.402 42.308 0.00 0.00 0.00 1.85
1692 3653 3.007398 AGCTTGATCTGGTCGTTCTTTCT 59.993 43.478 0.00 0.00 0.00 2.52
1693 3654 3.330267 AGCTTGATCTGGTCGTTCTTTC 58.670 45.455 0.00 0.00 0.00 2.62
1694 3655 3.409026 AGCTTGATCTGGTCGTTCTTT 57.591 42.857 0.00 0.00 0.00 2.52
1726 3697 3.743521 AGCAAAAGGGCCAGAATTTTTC 58.256 40.909 6.18 0.00 0.00 2.29
1733 3707 2.969821 TTTAGAGCAAAAGGGCCAGA 57.030 45.000 6.18 0.00 0.00 3.86
1784 4039 4.992688 TCATGCCAAAATATCGTGGAAAC 58.007 39.130 8.49 0.00 37.03 2.78
1795 4050 7.361894 GTTATTGCAAGTTTTCATGCCAAAAT 58.638 30.769 4.94 0.00 42.89 1.82
1796 4051 6.238593 GGTTATTGCAAGTTTTCATGCCAAAA 60.239 34.615 4.94 0.00 42.89 2.44
1798 4053 4.754114 GGTTATTGCAAGTTTTCATGCCAA 59.246 37.500 4.94 0.00 42.89 4.52
1799 4054 4.040217 AGGTTATTGCAAGTTTTCATGCCA 59.960 37.500 4.94 0.00 42.89 4.92
1800 4055 4.568956 AGGTTATTGCAAGTTTTCATGCC 58.431 39.130 4.94 0.00 42.89 4.40
1801 4056 6.155827 TGTAGGTTATTGCAAGTTTTCATGC 58.844 36.000 4.94 0.00 43.69 4.06
1802 4057 8.586570 TTTGTAGGTTATTGCAAGTTTTCATG 57.413 30.769 4.94 0.00 0.00 3.07
1803 4058 9.777297 ATTTTGTAGGTTATTGCAAGTTTTCAT 57.223 25.926 4.94 0.00 0.00 2.57
1809 4064 9.483916 GGTTAAATTTTGTAGGTTATTGCAAGT 57.516 29.630 4.94 0.00 0.00 3.16
1812 4067 9.646427 GATGGTTAAATTTTGTAGGTTATTGCA 57.354 29.630 0.00 0.00 0.00 4.08
1813 4068 9.869757 AGATGGTTAAATTTTGTAGGTTATTGC 57.130 29.630 0.00 0.00 0.00 3.56
1819 4074 9.927668 CATCAAAGATGGTTAAATTTTGTAGGT 57.072 29.630 0.00 0.00 32.22 3.08
1820 4075 9.927668 ACATCAAAGATGGTTAAATTTTGTAGG 57.072 29.630 11.29 0.00 32.22 3.18
1823 4078 8.558700 GCAACATCAAAGATGGTTAAATTTTGT 58.441 29.630 11.29 0.00 32.22 2.83
1826 4081 8.674263 TTGCAACATCAAAGATGGTTAAATTT 57.326 26.923 11.29 0.00 0.00 1.82
1827 4082 8.674263 TTTGCAACATCAAAGATGGTTAAATT 57.326 26.923 0.00 0.00 32.69 1.82
1839 4094 9.688592 AAAAATTTGAAACTTTGCAACATCAAA 57.311 22.222 20.85 20.85 40.01 2.69
1885 4140 9.362151 ACCCTCTATGAACAGTAAATTCAAAAA 57.638 29.630 0.00 0.00 39.43 1.94
1886 4141 8.792633 CACCCTCTATGAACAGTAAATTCAAAA 58.207 33.333 0.00 0.00 39.43 2.44
1887 4142 7.094377 GCACCCTCTATGAACAGTAAATTCAAA 60.094 37.037 0.00 0.00 39.43 2.69
1888 4143 6.374333 GCACCCTCTATGAACAGTAAATTCAA 59.626 38.462 0.00 0.00 39.43 2.69
1890 4145 5.297029 GGCACCCTCTATGAACAGTAAATTC 59.703 44.000 0.00 0.00 0.00 2.17
1891 4146 5.044846 AGGCACCCTCTATGAACAGTAAATT 60.045 40.000 0.00 0.00 0.00 1.82
1893 4148 3.844211 AGGCACCCTCTATGAACAGTAAA 59.156 43.478 0.00 0.00 0.00 2.01
1894 4149 3.450904 AGGCACCCTCTATGAACAGTAA 58.549 45.455 0.00 0.00 0.00 2.24
1895 4150 3.116096 AGGCACCCTCTATGAACAGTA 57.884 47.619 0.00 0.00 0.00 2.74
1896 4151 1.958288 AGGCACCCTCTATGAACAGT 58.042 50.000 0.00 0.00 0.00 3.55
1897 4152 2.366916 CCTAGGCACCCTCTATGAACAG 59.633 54.545 0.00 0.00 34.61 3.16
1898 4153 2.398588 CCTAGGCACCCTCTATGAACA 58.601 52.381 0.00 0.00 34.61 3.18
1899 4154 1.070914 GCCTAGGCACCCTCTATGAAC 59.929 57.143 29.33 0.00 41.49 3.18
1900 4155 1.424638 GCCTAGGCACCCTCTATGAA 58.575 55.000 29.33 0.00 41.49 2.57
1901 4156 3.149436 GCCTAGGCACCCTCTATGA 57.851 57.895 29.33 0.00 41.49 2.15
1914 4169 3.854669 CAGCTCCCGGGTGCCTAG 61.855 72.222 37.33 25.70 36.61 3.02
1915 4170 2.808761 TAACAGCTCCCGGGTGCCTA 62.809 60.000 37.33 25.05 46.30 3.93
1917 4172 3.712907 TAACAGCTCCCGGGTGCC 61.713 66.667 37.33 22.60 46.30 5.01
1918 4173 2.436115 GTAACAGCTCCCGGGTGC 60.436 66.667 35.10 35.10 46.30 5.01
1920 4175 2.590114 GGTGTAACAGCTCCCGGGT 61.590 63.158 22.86 1.40 39.98 5.28
1921 4176 1.838073 AAGGTGTAACAGCTCCCGGG 61.838 60.000 16.85 16.85 41.59 5.73
1922 4177 0.036306 AAAGGTGTAACAGCTCCCGG 59.964 55.000 0.00 0.00 41.59 5.73
1923 4178 1.002087 AGAAAGGTGTAACAGCTCCCG 59.998 52.381 0.00 0.00 41.59 5.14
1924 4179 2.038557 TCAGAAAGGTGTAACAGCTCCC 59.961 50.000 0.00 0.00 41.59 4.30
1925 4180 3.402628 TCAGAAAGGTGTAACAGCTCC 57.597 47.619 0.00 0.00 41.59 4.70
1926 4181 4.318831 CGTTTCAGAAAGGTGTAACAGCTC 60.319 45.833 7.34 0.00 41.59 4.09
1927 4182 3.560068 CGTTTCAGAAAGGTGTAACAGCT 59.440 43.478 7.34 0.00 44.48 4.24
1928 4183 3.311596 ACGTTTCAGAAAGGTGTAACAGC 59.688 43.478 18.32 0.00 39.98 4.40
1929 4184 6.780706 ATACGTTTCAGAAAGGTGTAACAG 57.219 37.500 25.04 1.84 39.55 3.16
1930 4185 8.836268 ATAATACGTTTCAGAAAGGTGTAACA 57.164 30.769 25.04 10.10 39.55 2.41
1933 4188 9.926158 TGTTATAATACGTTTCAGAAAGGTGTA 57.074 29.630 25.04 18.26 39.55 2.90
1934 4189 8.836268 TGTTATAATACGTTTCAGAAAGGTGT 57.164 30.769 25.04 18.36 39.55 4.16
1935 4190 9.755064 CTTGTTATAATACGTTTCAGAAAGGTG 57.245 33.333 25.04 9.18 39.55 4.00
1936 4191 9.498176 ACTTGTTATAATACGTTTCAGAAAGGT 57.502 29.630 21.66 21.66 41.75 3.50
1967 4222 3.452627 CCCTGTATGTTGAGCTACTCCTT 59.547 47.826 0.00 0.00 0.00 3.36
1981 4236 3.181476 GCCAGTAAATTTGCCCCTGTATG 60.181 47.826 0.00 0.00 0.00 2.39
2046 4301 0.399454 AGTGTGAAGCTGCTCCACAT 59.601 50.000 24.34 10.95 41.97 3.21
2059 4314 5.628200 GCATATACCCCTTGTACAAGTGTGA 60.628 44.000 29.05 18.76 36.72 3.58
2093 4348 1.759445 GAGACATTGGGCAGAGAGCTA 59.241 52.381 0.00 0.00 44.79 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.