Multiple sequence alignment - TraesCS1A01G370900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G370900 chr1A 100.000 3092 0 0 1 3092 547982674 547979583 0.000000e+00 5710.0
1 TraesCS1A01G370900 chr1A 91.592 1570 117 10 919 2477 548437691 548439256 0.000000e+00 2154.0
2 TraesCS1A01G370900 chr1B 95.699 2023 53 12 575 2580 623771784 623769779 0.000000e+00 3223.0
3 TraesCS1A01G370900 chr1B 90.549 1841 143 20 652 2477 623961855 623963679 0.000000e+00 2407.0
4 TraesCS1A01G370900 chr1B 92.495 533 13 9 2576 3092 623769105 623768584 0.000000e+00 737.0
5 TraesCS1A01G370900 chr1B 81.865 386 64 4 698 1082 623952602 623952222 1.380000e-83 320.0
6 TraesCS1A01G370900 chr1B 86.854 213 26 2 1 211 26978890 26979102 1.430000e-58 237.0
7 TraesCS1A01G370900 chr1B 88.421 95 11 0 237 331 260052392 260052486 7.010000e-22 115.0
8 TraesCS1A01G370900 chr1D 88.651 1727 140 23 407 2115 453293748 453292060 0.000000e+00 2052.0
9 TraesCS1A01G370900 chr1D 97.872 517 8 2 2576 3092 453290899 453290386 0.000000e+00 891.0
10 TraesCS1A01G370900 chr1D 89.802 353 20 3 2216 2553 453292065 453291714 3.660000e-119 438.0
11 TraesCS1A01G370900 chr1D 92.000 50 3 1 283 331 17256146 17256097 5.530000e-08 69.4
12 TraesCS1A01G370900 chr7D 88.152 211 23 2 3 211 62116848 62116638 1.840000e-62 250.0
13 TraesCS1A01G370900 chr7D 72.516 473 98 24 1023 1470 548617169 548617634 1.160000e-24 124.0
14 TraesCS1A01G370900 chr7D 77.551 196 30 7 1288 1470 548609272 548609466 4.220000e-19 106.0
15 TraesCS1A01G370900 chr2B 91.617 167 13 1 46 211 786032577 786032743 2.400000e-56 230.0
16 TraesCS1A01G370900 chr2B 87.402 127 15 1 84 209 335527558 335527432 8.940000e-31 145.0
17 TraesCS1A01G370900 chr6B 91.566 166 12 2 48 212 678742697 678742861 8.630000e-56 228.0
18 TraesCS1A01G370900 chr6B 86.111 180 22 3 2 179 114262915 114262737 1.130000e-44 191.0
19 TraesCS1A01G370900 chr6B 89.552 67 7 0 262 328 660486899 660486965 5.490000e-13 86.1
20 TraesCS1A01G370900 chr5B 86.047 215 23 6 3 211 632229176 632229389 1.120000e-54 224.0
21 TraesCS1A01G370900 chr5D 85.581 215 24 6 3 211 503739820 503740033 5.190000e-53 219.0
22 TraesCS1A01G370900 chr7B 86.466 133 15 3 84 214 531437307 531437438 3.210000e-30 143.0
23 TraesCS1A01G370900 chr7B 87.755 98 10 2 235 331 140025491 140025395 2.520000e-21 113.0
24 TraesCS1A01G370900 chr7B 86.598 97 5 2 235 331 680667908 680667820 1.960000e-17 100.0
25 TraesCS1A01G370900 chr7A 89.691 97 8 2 235 331 720771706 720771800 4.190000e-24 122.0
26 TraesCS1A01G370900 chr4D 72.785 474 88 29 1025 1470 379501325 379500865 4.190000e-24 122.0
27 TraesCS1A01G370900 chr4D 84.466 103 10 4 231 331 42192470 42192568 2.540000e-16 97.1
28 TraesCS1A01G370900 chr4D 83.654 104 14 2 231 331 42178756 42178859 9.130000e-16 95.3
29 TraesCS1A01G370900 chr4A 72.840 405 78 21 1013 1392 84934834 84935231 3.260000e-20 110.0
30 TraesCS1A01G370900 chr4B 76.562 192 36 3 1288 1470 466695464 466695273 2.540000e-16 97.1
31 TraesCS1A01G370900 chr2D 84.211 95 8 2 244 331 310226368 310226462 5.490000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G370900 chr1A 547979583 547982674 3091 True 5710 5710 100.000000 1 3092 1 chr1A.!!$R1 3091
1 TraesCS1A01G370900 chr1A 548437691 548439256 1565 False 2154 2154 91.592000 919 2477 1 chr1A.!!$F1 1558
2 TraesCS1A01G370900 chr1B 623961855 623963679 1824 False 2407 2407 90.549000 652 2477 1 chr1B.!!$F3 1825
3 TraesCS1A01G370900 chr1B 623768584 623771784 3200 True 1980 3223 94.097000 575 3092 2 chr1B.!!$R2 2517
4 TraesCS1A01G370900 chr1D 453290386 453293748 3362 True 1127 2052 92.108333 407 3092 3 chr1D.!!$R2 2685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.036306 AAACCCACAACCTCCTAGCG 59.964 55.0 0.0 0.0 0.00 4.26 F
171 172 0.040942 CCCACATCCCCAATTCACCA 59.959 55.0 0.0 0.0 0.00 4.17 F
595 596 0.109723 TCTGCAAGTGGGTGGGTAAC 59.890 55.0 0.0 0.0 33.76 2.50 F
900 923 0.243907 GGTACGCAGAGTGAAGCAGA 59.756 55.0 0.0 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1041 1067 1.075151 GGGGAGACGGGAGAGGATT 60.075 63.158 0.0 0.0 0.00 3.01 R
1623 1649 1.881973 GTGAGAAAATGCAGACAGCCA 59.118 47.619 0.0 0.0 44.83 4.75 R
1783 1812 2.178912 ACCACCAGTTCAACCATACG 57.821 50.000 0.0 0.0 0.00 3.06 R
2617 3471 3.017048 TGCAATACATTAGGGCAGCTT 57.983 42.857 0.0 0.0 0.00 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203337 AGAGTTTGGCCGCTGCAA 60.203 55.556 1.55 0.00 40.13 4.08
18 19 1.827789 AGAGTTTGGCCGCTGCAAA 60.828 52.632 1.55 0.00 40.13 3.68
19 20 1.661509 GAGTTTGGCCGCTGCAAAC 60.662 57.895 14.10 14.10 40.13 2.93
20 21 2.661537 GTTTGGCCGCTGCAAACC 60.662 61.111 11.94 0.00 40.13 3.27
21 22 3.922640 TTTGGCCGCTGCAAACCC 61.923 61.111 1.55 0.00 40.13 4.11
25 26 3.910490 GCCGCTGCAAACCCACAA 61.910 61.111 0.00 0.00 37.47 3.33
26 27 2.027460 CCGCTGCAAACCCACAAC 59.973 61.111 0.00 0.00 0.00 3.32
27 28 2.027460 CGCTGCAAACCCACAACC 59.973 61.111 0.00 0.00 0.00 3.77
28 29 2.489275 CGCTGCAAACCCACAACCT 61.489 57.895 0.00 0.00 0.00 3.50
29 30 1.363807 GCTGCAAACCCACAACCTC 59.636 57.895 0.00 0.00 0.00 3.85
30 31 2.041153 CTGCAAACCCACAACCTCC 58.959 57.895 0.00 0.00 0.00 4.30
31 32 0.468029 CTGCAAACCCACAACCTCCT 60.468 55.000 0.00 0.00 0.00 3.69
32 33 0.847373 TGCAAACCCACAACCTCCTA 59.153 50.000 0.00 0.00 0.00 2.94
33 34 1.202879 TGCAAACCCACAACCTCCTAG 60.203 52.381 0.00 0.00 0.00 3.02
34 35 1.534729 CAAACCCACAACCTCCTAGC 58.465 55.000 0.00 0.00 0.00 3.42
35 36 0.036306 AAACCCACAACCTCCTAGCG 59.964 55.000 0.00 0.00 0.00 4.26
36 37 2.125106 CCCACAACCTCCTAGCGC 60.125 66.667 0.00 0.00 0.00 5.92
37 38 2.660064 CCCACAACCTCCTAGCGCT 61.660 63.158 17.26 17.26 0.00 5.92
38 39 1.448540 CCACAACCTCCTAGCGCTG 60.449 63.158 22.90 10.13 0.00 5.18
39 40 1.591703 CACAACCTCCTAGCGCTGA 59.408 57.895 22.90 8.96 0.00 4.26
40 41 0.737715 CACAACCTCCTAGCGCTGAC 60.738 60.000 22.90 0.00 0.00 3.51
41 42 1.153549 CAACCTCCTAGCGCTGACC 60.154 63.158 22.90 0.00 0.00 4.02
42 43 2.711922 AACCTCCTAGCGCTGACCG 61.712 63.158 22.90 5.96 40.75 4.79
43 44 3.141488 CCTCCTAGCGCTGACCGT 61.141 66.667 22.90 0.00 39.71 4.83
44 45 2.103143 CTCCTAGCGCTGACCGTG 59.897 66.667 22.90 1.13 39.71 4.94
45 46 3.417275 CTCCTAGCGCTGACCGTGG 62.417 68.421 22.90 12.08 39.71 4.94
46 47 4.514577 CCTAGCGCTGACCGTGGG 62.515 72.222 22.90 0.00 39.71 4.61
47 48 4.514577 CTAGCGCTGACCGTGGGG 62.515 72.222 22.90 0.00 39.71 4.96
59 60 4.992740 GTGGGGTGCATGTGCCCA 62.993 66.667 22.39 0.00 46.59 5.36
60 61 4.992740 TGGGGTGCATGTGCCCAC 62.993 66.667 22.39 14.61 46.59 4.61
63 64 3.376078 GGTGCATGTGCCCACCTG 61.376 66.667 11.69 0.00 46.23 4.00
64 65 2.282391 GTGCATGTGCCCACCTGA 60.282 61.111 7.70 0.00 41.18 3.86
65 66 1.902918 GTGCATGTGCCCACCTGAA 60.903 57.895 7.70 0.00 41.18 3.02
66 67 1.902918 TGCATGTGCCCACCTGAAC 60.903 57.895 7.70 0.00 41.18 3.18
67 68 2.639327 GCATGTGCCCACCTGAACC 61.639 63.158 7.70 0.00 34.31 3.62
68 69 1.978617 CATGTGCCCACCTGAACCC 60.979 63.158 0.00 0.00 0.00 4.11
69 70 3.224007 ATGTGCCCACCTGAACCCC 62.224 63.158 0.00 0.00 0.00 4.95
72 73 4.717313 GCCCACCTGAACCCCGAC 62.717 72.222 0.00 0.00 0.00 4.79
73 74 4.388499 CCCACCTGAACCCCGACG 62.388 72.222 0.00 0.00 0.00 5.12
85 86 4.796231 CCGACGCGGGAGAACAGG 62.796 72.222 12.47 0.00 44.15 4.00
86 87 3.744719 CGACGCGGGAGAACAGGA 61.745 66.667 12.47 0.00 0.00 3.86
87 88 2.126031 GACGCGGGAGAACAGGAC 60.126 66.667 12.47 0.00 0.00 3.85
88 89 2.915659 ACGCGGGAGAACAGGACA 60.916 61.111 12.47 0.00 0.00 4.02
89 90 2.227089 GACGCGGGAGAACAGGACAT 62.227 60.000 12.47 0.00 0.00 3.06
90 91 1.811266 CGCGGGAGAACAGGACATG 60.811 63.158 0.00 0.00 0.00 3.21
91 92 1.296715 GCGGGAGAACAGGACATGT 59.703 57.895 0.00 0.00 46.97 3.21
92 93 1.021390 GCGGGAGAACAGGACATGTG 61.021 60.000 1.15 0.00 43.00 3.21
93 94 0.321671 CGGGAGAACAGGACATGTGT 59.678 55.000 1.15 0.00 43.00 3.72
94 95 1.548719 CGGGAGAACAGGACATGTGTA 59.451 52.381 1.15 0.00 43.00 2.90
95 96 2.028476 CGGGAGAACAGGACATGTGTAA 60.028 50.000 1.15 0.00 43.00 2.41
96 97 3.556213 CGGGAGAACAGGACATGTGTAAA 60.556 47.826 1.15 0.00 43.00 2.01
97 98 3.751698 GGGAGAACAGGACATGTGTAAAC 59.248 47.826 1.15 0.00 43.00 2.01
98 99 4.385825 GGAGAACAGGACATGTGTAAACA 58.614 43.478 1.15 0.00 43.00 2.83
99 100 4.819630 GGAGAACAGGACATGTGTAAACAA 59.180 41.667 1.15 0.00 43.00 2.83
100 101 5.298276 GGAGAACAGGACATGTGTAAACAAA 59.702 40.000 1.15 0.00 43.00 2.83
101 102 6.377327 AGAACAGGACATGTGTAAACAAAG 57.623 37.500 1.15 0.00 43.00 2.77
102 103 4.568152 ACAGGACATGTGTAAACAAAGC 57.432 40.909 1.15 0.00 41.91 3.51
103 104 4.207165 ACAGGACATGTGTAAACAAAGCT 58.793 39.130 1.15 0.00 41.91 3.74
104 105 4.644685 ACAGGACATGTGTAAACAAAGCTT 59.355 37.500 1.15 0.00 41.91 3.74
105 106 4.977963 CAGGACATGTGTAAACAAAGCTTG 59.022 41.667 1.15 0.00 0.00 4.01
106 107 4.037923 AGGACATGTGTAAACAAAGCTTGG 59.962 41.667 1.15 0.00 34.12 3.61
107 108 4.298332 GACATGTGTAAACAAAGCTTGGG 58.702 43.478 1.15 1.04 34.12 4.12
108 109 2.880963 TGTGTAAACAAAGCTTGGGC 57.119 45.000 5.66 0.00 39.06 5.36
118 119 4.423231 GCTTGGGCTTAAGGCAGT 57.577 55.556 28.08 0.00 44.01 4.40
119 120 3.569873 GCTTGGGCTTAAGGCAGTA 57.430 52.632 28.08 12.65 44.01 2.74
120 121 1.834188 GCTTGGGCTTAAGGCAGTAA 58.166 50.000 28.08 18.33 44.01 2.24
121 122 2.167662 GCTTGGGCTTAAGGCAGTAAA 58.832 47.619 28.08 15.75 44.01 2.01
122 123 2.760650 GCTTGGGCTTAAGGCAGTAAAT 59.239 45.455 28.08 0.00 44.01 1.40
123 124 3.951680 GCTTGGGCTTAAGGCAGTAAATA 59.048 43.478 28.08 6.16 44.01 1.40
124 125 4.401202 GCTTGGGCTTAAGGCAGTAAATAA 59.599 41.667 28.08 11.18 44.01 1.40
125 126 5.105513 GCTTGGGCTTAAGGCAGTAAATAAA 60.106 40.000 28.08 9.49 44.01 1.40
126 127 5.907866 TGGGCTTAAGGCAGTAAATAAAC 57.092 39.130 28.08 9.12 44.01 2.01
127 128 4.707934 TGGGCTTAAGGCAGTAAATAAACC 59.292 41.667 28.08 8.64 44.01 3.27
128 129 4.098960 GGGCTTAAGGCAGTAAATAAACCC 59.901 45.833 28.08 10.28 44.01 4.11
129 130 4.098960 GGCTTAAGGCAGTAAATAAACCCC 59.901 45.833 23.15 0.00 44.01 4.95
130 131 4.954202 GCTTAAGGCAGTAAATAAACCCCT 59.046 41.667 4.29 0.00 41.35 4.79
131 132 5.421056 GCTTAAGGCAGTAAATAAACCCCTT 59.579 40.000 4.29 0.00 41.35 3.95
132 133 6.070995 GCTTAAGGCAGTAAATAAACCCCTTT 60.071 38.462 4.29 0.00 41.35 3.11
133 134 7.526526 GCTTAAGGCAGTAAATAAACCCCTTTT 60.527 37.037 4.29 0.00 41.35 2.27
134 135 8.953223 TTAAGGCAGTAAATAAACCCCTTTTA 57.047 30.769 0.00 0.00 34.91 1.52
135 136 7.476540 AAGGCAGTAAATAAACCCCTTTTAG 57.523 36.000 0.00 0.00 33.04 1.85
136 137 6.558498 AGGCAGTAAATAAACCCCTTTTAGT 58.442 36.000 0.00 0.00 33.04 2.24
137 138 6.436218 AGGCAGTAAATAAACCCCTTTTAGTG 59.564 38.462 0.00 0.00 38.44 2.74
138 139 6.434965 GGCAGTAAATAAACCCCTTTTAGTGA 59.565 38.462 11.63 0.00 37.99 3.41
139 140 7.039574 GGCAGTAAATAAACCCCTTTTAGTGAA 60.040 37.037 11.63 0.00 37.99 3.18
140 141 8.528643 GCAGTAAATAAACCCCTTTTAGTGAAT 58.471 33.333 11.63 0.00 37.99 2.57
141 142 9.855021 CAGTAAATAAACCCCTTTTAGTGAATG 57.145 33.333 0.00 0.00 37.99 2.67
142 143 9.816787 AGTAAATAAACCCCTTTTAGTGAATGA 57.183 29.630 0.00 0.00 33.04 2.57
143 144 9.850628 GTAAATAAACCCCTTTTAGTGAATGAC 57.149 33.333 0.00 0.00 33.04 3.06
144 145 8.485578 AAATAAACCCCTTTTAGTGAATGACA 57.514 30.769 0.00 0.00 33.04 3.58
145 146 8.664669 AATAAACCCCTTTTAGTGAATGACAT 57.335 30.769 0.00 0.00 33.04 3.06
146 147 6.590234 AAACCCCTTTTAGTGAATGACATC 57.410 37.500 0.00 0.00 0.00 3.06
147 148 5.255397 ACCCCTTTTAGTGAATGACATCA 57.745 39.130 0.00 0.00 0.00 3.07
148 149 5.831103 ACCCCTTTTAGTGAATGACATCAT 58.169 37.500 0.00 0.00 38.41 2.45
150 151 6.153340 ACCCCTTTTAGTGAATGACATCATTG 59.847 38.462 11.78 0.00 45.72 2.82
151 152 6.153340 CCCCTTTTAGTGAATGACATCATTGT 59.847 38.462 11.78 0.00 45.72 2.71
161 162 2.301346 GACATCATTGTCCCACATCCC 58.699 52.381 0.00 0.00 45.45 3.85
162 163 1.063717 ACATCATTGTCCCACATCCCC 60.064 52.381 0.00 0.00 0.00 4.81
163 164 1.063792 CATCATTGTCCCACATCCCCA 60.064 52.381 0.00 0.00 0.00 4.96
164 165 1.079796 TCATTGTCCCACATCCCCAA 58.920 50.000 0.00 0.00 0.00 4.12
165 166 1.645391 TCATTGTCCCACATCCCCAAT 59.355 47.619 0.00 0.00 0.00 3.16
166 167 2.044215 TCATTGTCCCACATCCCCAATT 59.956 45.455 0.00 0.00 0.00 2.32
167 168 2.230130 TTGTCCCACATCCCCAATTC 57.770 50.000 0.00 0.00 0.00 2.17
168 169 1.079796 TGTCCCACATCCCCAATTCA 58.920 50.000 0.00 0.00 0.00 2.57
169 170 1.272425 TGTCCCACATCCCCAATTCAC 60.272 52.381 0.00 0.00 0.00 3.18
170 171 0.334676 TCCCACATCCCCAATTCACC 59.665 55.000 0.00 0.00 0.00 4.02
171 172 0.040942 CCCACATCCCCAATTCACCA 59.959 55.000 0.00 0.00 0.00 4.17
172 173 1.477553 CCACATCCCCAATTCACCAG 58.522 55.000 0.00 0.00 0.00 4.00
173 174 1.477553 CACATCCCCAATTCACCAGG 58.522 55.000 0.00 0.00 0.00 4.45
174 175 0.336048 ACATCCCCAATTCACCAGGG 59.664 55.000 0.00 0.00 42.44 4.45
175 176 4.700887 TCCCCAATTCACCAGGGA 57.299 55.556 0.00 0.00 46.54 4.20
176 177 2.397815 TCCCCAATTCACCAGGGAG 58.602 57.895 0.00 0.00 43.81 4.30
177 178 1.380380 CCCCAATTCACCAGGGAGC 60.380 63.158 0.00 0.00 45.80 4.70
178 179 1.693640 CCCAATTCACCAGGGAGCT 59.306 57.895 0.00 0.00 45.80 4.09
179 180 0.394899 CCCAATTCACCAGGGAGCTC 60.395 60.000 4.71 4.71 45.80 4.09
180 181 0.394899 CCAATTCACCAGGGAGCTCC 60.395 60.000 25.59 25.59 0.00 4.70
181 182 0.329261 CAATTCACCAGGGAGCTCCA 59.671 55.000 33.29 12.25 38.24 3.86
182 183 1.064166 CAATTCACCAGGGAGCTCCAT 60.064 52.381 33.29 25.66 38.24 3.41
183 184 1.302907 ATTCACCAGGGAGCTCCATT 58.697 50.000 33.29 18.54 38.24 3.16
184 185 1.075601 TTCACCAGGGAGCTCCATTT 58.924 50.000 33.29 15.91 38.24 2.32
185 186 0.620556 TCACCAGGGAGCTCCATTTC 59.379 55.000 33.29 16.47 38.24 2.17
186 187 0.622665 CACCAGGGAGCTCCATTTCT 59.377 55.000 33.29 18.54 38.24 2.52
187 188 1.005215 CACCAGGGAGCTCCATTTCTT 59.995 52.381 33.29 9.89 38.24 2.52
188 189 1.005215 ACCAGGGAGCTCCATTTCTTG 59.995 52.381 33.29 18.53 38.24 3.02
190 191 0.627986 AGGGAGCTCCATTTCTTGGG 59.372 55.000 33.29 0.00 46.45 4.12
191 192 0.625849 GGGAGCTCCATTTCTTGGGA 59.374 55.000 33.29 0.00 46.45 4.37
198 199 4.494091 CTCCATTTCTTGGGAGCTTAGA 57.506 45.455 0.00 0.00 46.45 2.10
199 200 4.848357 CTCCATTTCTTGGGAGCTTAGAA 58.152 43.478 0.00 0.00 46.45 2.10
200 201 5.255397 TCCATTTCTTGGGAGCTTAGAAA 57.745 39.130 13.20 13.20 46.45 2.52
201 202 5.010282 TCCATTTCTTGGGAGCTTAGAAAC 58.990 41.667 13.13 0.00 46.45 2.78
202 203 5.012893 CCATTTCTTGGGAGCTTAGAAACT 58.987 41.667 13.13 0.00 42.33 2.66
203 204 5.105997 CCATTTCTTGGGAGCTTAGAAACTG 60.106 44.000 13.13 12.18 42.33 3.16
204 205 4.706842 TTCTTGGGAGCTTAGAAACTGT 57.293 40.909 0.00 0.00 0.00 3.55
205 206 5.818678 TTCTTGGGAGCTTAGAAACTGTA 57.181 39.130 0.00 0.00 0.00 2.74
206 207 5.818678 TCTTGGGAGCTTAGAAACTGTAA 57.181 39.130 0.00 0.00 0.00 2.41
207 208 6.182507 TCTTGGGAGCTTAGAAACTGTAAA 57.817 37.500 0.00 0.00 0.00 2.01
208 209 6.231211 TCTTGGGAGCTTAGAAACTGTAAAG 58.769 40.000 0.00 0.00 0.00 1.85
209 210 5.818678 TGGGAGCTTAGAAACTGTAAAGA 57.181 39.130 0.00 0.00 0.00 2.52
210 211 6.374417 TGGGAGCTTAGAAACTGTAAAGAT 57.626 37.500 0.00 0.00 0.00 2.40
211 212 7.490657 TGGGAGCTTAGAAACTGTAAAGATA 57.509 36.000 0.00 0.00 0.00 1.98
212 213 8.090788 TGGGAGCTTAGAAACTGTAAAGATAT 57.909 34.615 0.00 0.00 0.00 1.63
213 214 8.204836 TGGGAGCTTAGAAACTGTAAAGATATC 58.795 37.037 0.00 0.00 0.00 1.63
214 215 7.658167 GGGAGCTTAGAAACTGTAAAGATATCC 59.342 40.741 0.00 0.00 0.00 2.59
215 216 7.658167 GGAGCTTAGAAACTGTAAAGATATCCC 59.342 40.741 0.00 0.00 0.00 3.85
216 217 8.325477 AGCTTAGAAACTGTAAAGATATCCCT 57.675 34.615 0.00 0.00 0.00 4.20
217 218 9.435570 AGCTTAGAAACTGTAAAGATATCCCTA 57.564 33.333 0.00 0.00 0.00 3.53
264 265 8.999220 TGTTTATATTTGCAATGCTTCAATGA 57.001 26.923 6.82 0.00 0.00 2.57
265 266 8.871862 TGTTTATATTTGCAATGCTTCAATGAC 58.128 29.630 6.82 0.00 0.00 3.06
266 267 9.090692 GTTTATATTTGCAATGCTTCAATGACT 57.909 29.630 6.82 0.00 0.00 3.41
267 268 8.637281 TTATATTTGCAATGCTTCAATGACTG 57.363 30.769 6.82 0.00 0.00 3.51
268 269 4.325028 TTTGCAATGCTTCAATGACTGT 57.675 36.364 6.82 0.00 0.00 3.55
269 270 5.450592 TTTGCAATGCTTCAATGACTGTA 57.549 34.783 6.82 0.00 0.00 2.74
270 271 5.648178 TTGCAATGCTTCAATGACTGTAT 57.352 34.783 6.82 0.00 0.00 2.29
271 272 5.648178 TGCAATGCTTCAATGACTGTATT 57.352 34.783 6.82 0.00 0.00 1.89
272 273 6.756299 TGCAATGCTTCAATGACTGTATTA 57.244 33.333 6.82 0.00 0.00 0.98
273 274 6.554419 TGCAATGCTTCAATGACTGTATTAC 58.446 36.000 6.82 0.00 0.00 1.89
274 275 6.375174 TGCAATGCTTCAATGACTGTATTACT 59.625 34.615 6.82 0.00 0.00 2.24
275 276 6.690098 GCAATGCTTCAATGACTGTATTACTG 59.310 38.462 0.00 0.00 0.00 2.74
276 277 6.932356 ATGCTTCAATGACTGTATTACTGG 57.068 37.500 5.80 0.00 0.00 4.00
277 278 6.048732 TGCTTCAATGACTGTATTACTGGA 57.951 37.500 5.80 0.00 0.00 3.86
278 279 6.653020 TGCTTCAATGACTGTATTACTGGAT 58.347 36.000 5.80 0.00 0.00 3.41
279 280 7.112122 TGCTTCAATGACTGTATTACTGGATT 58.888 34.615 5.80 1.60 0.00 3.01
280 281 7.066163 TGCTTCAATGACTGTATTACTGGATTG 59.934 37.037 14.77 14.77 0.00 2.67
281 282 7.467811 GCTTCAATGACTGTATTACTGGATTGG 60.468 40.741 17.77 10.34 29.90 3.16
282 283 7.194112 TCAATGACTGTATTACTGGATTGGA 57.806 36.000 17.77 9.30 29.90 3.53
283 284 7.805163 TCAATGACTGTATTACTGGATTGGAT 58.195 34.615 17.77 0.00 29.90 3.41
284 285 8.933653 TCAATGACTGTATTACTGGATTGGATA 58.066 33.333 17.77 6.10 29.90 2.59
285 286 9.730705 CAATGACTGTATTACTGGATTGGATAT 57.269 33.333 13.90 0.00 0.00 1.63
286 287 9.730705 AATGACTGTATTACTGGATTGGATATG 57.269 33.333 5.80 0.00 0.00 1.78
287 288 8.491045 TGACTGTATTACTGGATTGGATATGA 57.509 34.615 5.80 0.00 0.00 2.15
288 289 8.367911 TGACTGTATTACTGGATTGGATATGAC 58.632 37.037 5.80 0.00 0.00 3.06
289 290 8.497910 ACTGTATTACTGGATTGGATATGACT 57.502 34.615 5.80 0.00 0.00 3.41
290 291 9.601810 ACTGTATTACTGGATTGGATATGACTA 57.398 33.333 5.80 0.00 0.00 2.59
295 296 6.531503 ACTGGATTGGATATGACTATACCG 57.468 41.667 0.00 0.00 0.00 4.02
296 297 5.422331 ACTGGATTGGATATGACTATACCGG 59.578 44.000 0.00 0.00 0.00 5.28
297 298 4.714802 TGGATTGGATATGACTATACCGGG 59.285 45.833 6.32 0.00 0.00 5.73
298 299 4.443034 GGATTGGATATGACTATACCGGGC 60.443 50.000 6.32 0.00 0.00 6.13
299 300 3.178412 TGGATATGACTATACCGGGCA 57.822 47.619 6.32 0.00 0.00 5.36
300 301 3.512496 TGGATATGACTATACCGGGCAA 58.488 45.455 6.32 0.00 0.00 4.52
301 302 3.259876 TGGATATGACTATACCGGGCAAC 59.740 47.826 6.32 0.00 0.00 4.17
302 303 3.259876 GGATATGACTATACCGGGCAACA 59.740 47.826 6.32 0.00 39.74 3.33
303 304 2.614829 ATGACTATACCGGGCAACAC 57.385 50.000 6.32 0.00 39.74 3.32
304 305 0.538118 TGACTATACCGGGCAACACC 59.462 55.000 6.32 0.00 39.74 4.16
334 335 3.981308 GGCAAGCCGCACTTAAGA 58.019 55.556 10.09 0.00 45.17 2.10
335 336 2.482326 GGCAAGCCGCACTTAAGAT 58.518 52.632 10.09 0.00 45.17 2.40
336 337 1.663695 GGCAAGCCGCACTTAAGATA 58.336 50.000 10.09 0.00 45.17 1.98
337 338 1.599542 GGCAAGCCGCACTTAAGATAG 59.400 52.381 10.09 0.00 45.17 2.08
338 339 2.280628 GCAAGCCGCACTTAAGATAGT 58.719 47.619 10.09 0.00 41.79 2.12
339 340 2.285488 GCAAGCCGCACTTAAGATAGTC 59.715 50.000 10.09 0.00 41.79 2.59
340 341 3.521560 CAAGCCGCACTTAAGATAGTCA 58.478 45.455 10.09 0.00 36.04 3.41
341 342 3.166489 AGCCGCACTTAAGATAGTCAC 57.834 47.619 10.09 0.00 0.00 3.67
342 343 2.761208 AGCCGCACTTAAGATAGTCACT 59.239 45.455 10.09 0.00 0.00 3.41
343 344 3.952323 AGCCGCACTTAAGATAGTCACTA 59.048 43.478 10.09 0.00 0.00 2.74
344 345 4.036971 AGCCGCACTTAAGATAGTCACTAG 59.963 45.833 10.09 0.00 0.00 2.57
345 346 4.202030 GCCGCACTTAAGATAGTCACTAGT 60.202 45.833 10.09 0.00 0.00 2.57
346 347 5.274718 CCGCACTTAAGATAGTCACTAGTG 58.725 45.833 17.17 17.17 35.75 2.74
347 348 5.274718 CGCACTTAAGATAGTCACTAGTGG 58.725 45.833 22.48 5.08 33.84 4.00
348 349 5.593010 GCACTTAAGATAGTCACTAGTGGG 58.407 45.833 22.48 0.00 33.84 4.61
349 350 5.452077 GCACTTAAGATAGTCACTAGTGGGG 60.452 48.000 22.48 4.79 33.84 4.96
350 351 5.892119 CACTTAAGATAGTCACTAGTGGGGA 59.108 44.000 22.48 8.34 0.00 4.81
351 352 6.551601 CACTTAAGATAGTCACTAGTGGGGAT 59.448 42.308 22.48 12.58 0.00 3.85
352 353 6.551601 ACTTAAGATAGTCACTAGTGGGGATG 59.448 42.308 22.48 5.92 0.00 3.51
353 354 4.816048 AGATAGTCACTAGTGGGGATGA 57.184 45.455 22.48 0.00 0.00 2.92
354 355 5.144159 AGATAGTCACTAGTGGGGATGAA 57.856 43.478 22.48 0.00 0.00 2.57
355 356 5.721225 AGATAGTCACTAGTGGGGATGAAT 58.279 41.667 22.48 4.21 0.00 2.57
356 357 5.541868 AGATAGTCACTAGTGGGGATGAATG 59.458 44.000 22.48 0.00 0.00 2.67
357 358 3.454858 AGTCACTAGTGGGGATGAATGT 58.545 45.455 22.48 0.00 0.00 2.71
358 359 4.620723 AGTCACTAGTGGGGATGAATGTA 58.379 43.478 22.48 0.00 0.00 2.29
359 360 5.219739 AGTCACTAGTGGGGATGAATGTAT 58.780 41.667 22.48 0.00 0.00 2.29
360 361 6.382087 AGTCACTAGTGGGGATGAATGTATA 58.618 40.000 22.48 0.00 0.00 1.47
361 362 7.019388 AGTCACTAGTGGGGATGAATGTATAT 58.981 38.462 22.48 0.00 0.00 0.86
362 363 8.177456 AGTCACTAGTGGGGATGAATGTATATA 58.823 37.037 22.48 0.00 0.00 0.86
363 364 8.470805 GTCACTAGTGGGGATGAATGTATATAG 58.529 40.741 22.48 0.00 0.00 1.31
364 365 7.619698 TCACTAGTGGGGATGAATGTATATAGG 59.380 40.741 22.48 0.00 0.00 2.57
365 366 7.619698 CACTAGTGGGGATGAATGTATATAGGA 59.380 40.741 15.49 0.00 0.00 2.94
366 367 8.355256 ACTAGTGGGGATGAATGTATATAGGAT 58.645 37.037 0.00 0.00 0.00 3.24
367 368 9.883293 CTAGTGGGGATGAATGTATATAGGATA 57.117 37.037 0.00 0.00 0.00 2.59
369 370 9.163894 AGTGGGGATGAATGTATATAGGATATG 57.836 37.037 0.00 0.00 0.00 1.78
370 371 8.938883 GTGGGGATGAATGTATATAGGATATGT 58.061 37.037 0.00 0.00 0.00 2.29
371 372 9.519488 TGGGGATGAATGTATATAGGATATGTT 57.481 33.333 0.00 0.00 0.00 2.71
519 520 8.830915 TTTCAGGGGTGAAATAAATAAGCATA 57.169 30.769 0.00 0.00 33.40 3.14
526 527 9.216117 GGGTGAAATAAATAAGCATATACTCGT 57.784 33.333 0.00 0.00 0.00 4.18
544 545 0.451783 GTATCAGTTTGCTTGGGCCG 59.548 55.000 0.00 0.00 37.74 6.13
546 547 0.962356 ATCAGTTTGCTTGGGCCGAG 60.962 55.000 17.04 17.04 37.74 4.63
548 549 1.600916 AGTTTGCTTGGGCCGAGAC 60.601 57.895 25.47 13.61 37.74 3.36
549 550 2.668212 TTTGCTTGGGCCGAGACG 60.668 61.111 25.47 0.00 37.74 4.18
569 570 3.442625 ACGGAGTTTTTAGGCCTAAATGC 59.557 43.478 33.16 26.93 37.78 3.56
570 571 3.694566 CGGAGTTTTTAGGCCTAAATGCT 59.305 43.478 33.16 30.15 35.27 3.79
571 572 4.879545 CGGAGTTTTTAGGCCTAAATGCTA 59.120 41.667 33.16 18.91 35.27 3.49
572 573 5.531287 CGGAGTTTTTAGGCCTAAATGCTAT 59.469 40.000 33.16 19.58 35.27 2.97
573 574 6.708949 CGGAGTTTTTAGGCCTAAATGCTATA 59.291 38.462 33.16 17.88 35.27 1.31
595 596 0.109723 TCTGCAAGTGGGTGGGTAAC 59.890 55.000 0.00 0.00 33.76 2.50
613 614 2.615465 CCCCAGAATCAGCCCACCA 61.615 63.158 0.00 0.00 0.00 4.17
617 618 1.676746 CAGAATCAGCCCACCATCTG 58.323 55.000 0.00 0.00 0.00 2.90
628 633 1.033746 CACCATCTGGGCGCTTGAAT 61.034 55.000 7.64 0.00 42.05 2.57
650 655 2.158460 CCTAACCCCAGAATCCCATTCC 60.158 54.545 0.00 0.00 40.13 3.01
715 738 2.252855 CTCGCTATCTCCGTCGCC 59.747 66.667 0.00 0.00 0.00 5.54
763 786 1.630148 CGTTCCCACTTCATCTCGTC 58.370 55.000 0.00 0.00 0.00 4.20
900 923 0.243907 GGTACGCAGAGTGAAGCAGA 59.756 55.000 0.00 0.00 0.00 4.26
938 961 4.719273 CCTACCTTCCTTCATCTTCTTCCT 59.281 45.833 0.00 0.00 0.00 3.36
963 986 5.450137 GCATCTCTTGACCATTTCTCCATTG 60.450 44.000 0.00 0.00 0.00 2.82
982 1008 3.958147 AATCCGCGTGCCTCAGGTG 62.958 63.158 4.92 0.00 0.00 4.00
986 1012 4.664677 GCGTGCCTCAGGTGTCGT 62.665 66.667 0.00 0.00 0.00 4.34
1563 1589 3.967326 AGGAGAACGGATGGATTGATACA 59.033 43.478 0.00 0.00 0.00 2.29
1623 1649 5.046591 TCACTCGGGAGATGTGTTTCTTAAT 60.047 40.000 2.08 0.00 38.38 1.40
1724 1753 2.023673 CCCTGAACTTTGCACTGTTGA 58.976 47.619 8.07 0.00 0.00 3.18
2125 2154 1.130561 GTTGGTGCCTTCATAACGAGC 59.869 52.381 0.00 0.00 0.00 5.03
2326 2360 6.686484 AATGAGAGTGCCCCTTTTTATTTT 57.314 33.333 0.00 0.00 0.00 1.82
2454 2491 3.701040 ACAAATCAACTTGCTGTCCTTGT 59.299 39.130 0.00 0.00 0.00 3.16
2564 2740 9.666626 GTCAAGTAAGTAGTATATGCTAGTGTG 57.333 37.037 8.73 5.99 0.00 3.82
2617 3471 9.004717 TCGTTTTGTGGTATCAATTCATCTTTA 57.995 29.630 0.00 0.00 0.00 1.85
2709 3564 7.713073 TGTTCTACACATCACATGTAAAAGTCA 59.287 33.333 0.00 0.00 42.70 3.41
2728 3583 8.800370 AAAGTCAGACTTTTCTTTCTTCTTCT 57.200 30.769 21.03 0.00 45.38 2.85
3021 3898 8.627208 AGCAATTCTACTTGAAAGAGAAATGA 57.373 30.769 16.24 0.00 38.29 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.827789 TTTGCAGCGGCCAAACTCT 60.828 52.632 6.32 0.00 40.13 3.24
1 2 1.661509 GTTTGCAGCGGCCAAACTC 60.662 57.895 20.46 3.30 37.70 3.01
2 3 2.417097 GTTTGCAGCGGCCAAACT 59.583 55.556 20.46 0.00 37.70 2.66
3 4 2.661537 GGTTTGCAGCGGCCAAAC 60.662 61.111 19.91 19.91 38.82 2.93
4 5 3.922640 GGGTTTGCAGCGGCCAAA 61.923 61.111 6.32 4.45 40.13 3.28
8 9 3.910490 TTGTGGGTTTGCAGCGGC 61.910 61.111 0.31 0.31 41.68 6.53
9 10 2.027460 GTTGTGGGTTTGCAGCGG 59.973 61.111 0.00 0.00 0.00 5.52
10 11 2.027460 GGTTGTGGGTTTGCAGCG 59.973 61.111 0.00 0.00 0.00 5.18
11 12 1.363807 GAGGTTGTGGGTTTGCAGC 59.636 57.895 0.00 0.00 0.00 5.25
12 13 0.468029 AGGAGGTTGTGGGTTTGCAG 60.468 55.000 0.00 0.00 0.00 4.41
13 14 0.847373 TAGGAGGTTGTGGGTTTGCA 59.153 50.000 0.00 0.00 0.00 4.08
14 15 1.534729 CTAGGAGGTTGTGGGTTTGC 58.465 55.000 0.00 0.00 0.00 3.68
15 16 1.534729 GCTAGGAGGTTGTGGGTTTG 58.465 55.000 0.00 0.00 0.00 2.93
16 17 0.036306 CGCTAGGAGGTTGTGGGTTT 59.964 55.000 0.00 0.00 0.00 3.27
17 18 1.677552 CGCTAGGAGGTTGTGGGTT 59.322 57.895 0.00 0.00 0.00 4.11
18 19 2.955881 GCGCTAGGAGGTTGTGGGT 61.956 63.158 0.00 0.00 0.00 4.51
19 20 2.125106 GCGCTAGGAGGTTGTGGG 60.125 66.667 0.00 0.00 0.00 4.61
20 21 1.448540 CAGCGCTAGGAGGTTGTGG 60.449 63.158 10.99 0.00 0.00 4.17
21 22 0.737715 GTCAGCGCTAGGAGGTTGTG 60.738 60.000 10.99 0.00 0.00 3.33
22 23 1.592223 GTCAGCGCTAGGAGGTTGT 59.408 57.895 10.99 0.00 0.00 3.32
23 24 1.153549 GGTCAGCGCTAGGAGGTTG 60.154 63.158 10.99 0.00 0.00 3.77
24 25 2.711922 CGGTCAGCGCTAGGAGGTT 61.712 63.158 10.99 0.00 0.00 3.50
25 26 3.141488 CGGTCAGCGCTAGGAGGT 61.141 66.667 10.99 0.00 0.00 3.85
26 27 3.141488 ACGGTCAGCGCTAGGAGG 61.141 66.667 10.99 0.00 0.00 4.30
27 28 2.103143 CACGGTCAGCGCTAGGAG 59.897 66.667 10.99 4.95 0.00 3.69
28 29 3.449227 CCACGGTCAGCGCTAGGA 61.449 66.667 10.99 0.00 0.00 2.94
29 30 4.514577 CCCACGGTCAGCGCTAGG 62.515 72.222 10.99 5.38 0.00 3.02
30 31 4.514577 CCCCACGGTCAGCGCTAG 62.515 72.222 10.99 4.86 0.00 3.42
35 36 4.722700 ATGCACCCCACGGTCAGC 62.723 66.667 0.00 0.00 42.04 4.26
36 37 2.747460 CATGCACCCCACGGTCAG 60.747 66.667 0.00 0.00 42.04 3.51
37 38 3.565214 ACATGCACCCCACGGTCA 61.565 61.111 0.00 0.00 42.04 4.02
38 39 3.055719 CACATGCACCCCACGGTC 61.056 66.667 0.00 0.00 42.04 4.79
42 43 4.992740 TGGGCACATGCACCCCAC 62.993 66.667 18.58 0.00 45.73 4.61
43 44 4.992740 GTGGGCACATGCACCCCA 62.993 66.667 18.58 15.81 45.73 4.96
45 46 4.684134 AGGTGGGCACATGCACCC 62.684 66.667 15.34 15.34 45.73 4.61
46 47 3.376078 CAGGTGGGCACATGCACC 61.376 66.667 11.16 11.16 45.73 5.01
47 48 1.902918 TTCAGGTGGGCACATGCAC 60.903 57.895 6.15 1.96 46.69 4.57
48 49 1.902918 GTTCAGGTGGGCACATGCA 60.903 57.895 6.15 0.00 42.26 3.96
49 50 2.639327 GGTTCAGGTGGGCACATGC 61.639 63.158 0.00 0.00 42.26 4.06
50 51 1.978617 GGGTTCAGGTGGGCACATG 60.979 63.158 0.00 0.00 43.72 3.21
51 52 2.440599 GGGTTCAGGTGGGCACAT 59.559 61.111 0.00 0.00 0.00 3.21
52 53 3.897122 GGGGTTCAGGTGGGCACA 61.897 66.667 0.00 0.00 0.00 4.57
55 56 4.717313 GTCGGGGTTCAGGTGGGC 62.717 72.222 0.00 0.00 0.00 5.36
56 57 4.388499 CGTCGGGGTTCAGGTGGG 62.388 72.222 0.00 0.00 0.00 4.61
69 70 3.744719 TCCTGTTCTCCCGCGTCG 61.745 66.667 4.92 0.00 0.00 5.12
70 71 2.126031 GTCCTGTTCTCCCGCGTC 60.126 66.667 4.92 0.00 0.00 5.19
71 72 2.283529 ATGTCCTGTTCTCCCGCGT 61.284 57.895 4.92 0.00 0.00 6.01
72 73 1.811266 CATGTCCTGTTCTCCCGCG 60.811 63.158 0.00 0.00 0.00 6.46
73 74 1.021390 CACATGTCCTGTTCTCCCGC 61.021 60.000 0.00 0.00 35.29 6.13
74 75 0.321671 ACACATGTCCTGTTCTCCCG 59.678 55.000 0.00 0.00 35.29 5.14
75 76 3.695830 TTACACATGTCCTGTTCTCCC 57.304 47.619 0.00 0.00 35.29 4.30
76 77 4.385825 TGTTTACACATGTCCTGTTCTCC 58.614 43.478 0.00 0.00 35.29 3.71
77 78 6.371809 TTTGTTTACACATGTCCTGTTCTC 57.628 37.500 0.00 0.00 35.29 2.87
78 79 5.221048 GCTTTGTTTACACATGTCCTGTTCT 60.221 40.000 0.00 0.00 35.29 3.01
79 80 4.976116 GCTTTGTTTACACATGTCCTGTTC 59.024 41.667 0.00 0.00 35.29 3.18
80 81 4.644685 AGCTTTGTTTACACATGTCCTGTT 59.355 37.500 0.00 0.00 35.29 3.16
81 82 4.207165 AGCTTTGTTTACACATGTCCTGT 58.793 39.130 0.00 0.00 39.20 4.00
82 83 4.836125 AGCTTTGTTTACACATGTCCTG 57.164 40.909 0.00 0.00 31.06 3.86
83 84 4.037923 CCAAGCTTTGTTTACACATGTCCT 59.962 41.667 0.00 0.00 31.06 3.85
84 85 4.298332 CCAAGCTTTGTTTACACATGTCC 58.702 43.478 0.00 0.00 31.06 4.02
85 86 4.298332 CCCAAGCTTTGTTTACACATGTC 58.702 43.478 0.00 0.00 31.06 3.06
86 87 3.492482 GCCCAAGCTTTGTTTACACATGT 60.492 43.478 0.00 0.00 35.50 3.21
87 88 3.059166 GCCCAAGCTTTGTTTACACATG 58.941 45.455 0.00 0.00 35.50 3.21
88 89 3.385193 GCCCAAGCTTTGTTTACACAT 57.615 42.857 0.00 0.00 35.50 3.21
89 90 2.880963 GCCCAAGCTTTGTTTACACA 57.119 45.000 0.00 0.00 35.50 3.72
101 102 1.834188 TTACTGCCTTAAGCCCAAGC 58.166 50.000 0.00 0.00 42.71 4.01
102 103 6.330278 GTTTATTTACTGCCTTAAGCCCAAG 58.670 40.000 0.00 0.00 42.71 3.61
103 104 5.186215 GGTTTATTTACTGCCTTAAGCCCAA 59.814 40.000 0.00 0.00 42.71 4.12
104 105 4.707934 GGTTTATTTACTGCCTTAAGCCCA 59.292 41.667 0.00 0.00 42.71 5.36
105 106 4.098960 GGGTTTATTTACTGCCTTAAGCCC 59.901 45.833 0.00 0.00 42.71 5.19
106 107 4.098960 GGGGTTTATTTACTGCCTTAAGCC 59.901 45.833 0.00 0.00 42.71 4.35
107 108 4.954202 AGGGGTTTATTTACTGCCTTAAGC 59.046 41.667 0.00 0.00 44.14 3.09
108 109 7.476540 AAAGGGGTTTATTTACTGCCTTAAG 57.523 36.000 0.00 0.00 0.00 1.85
109 110 7.859026 AAAAGGGGTTTATTTACTGCCTTAA 57.141 32.000 0.00 0.00 0.00 1.85
110 111 8.172070 ACTAAAAGGGGTTTATTTACTGCCTTA 58.828 33.333 0.00 0.00 31.22 2.69
111 112 7.014449 ACTAAAAGGGGTTTATTTACTGCCTT 58.986 34.615 0.00 0.00 31.22 4.35
112 113 6.436218 CACTAAAAGGGGTTTATTTACTGCCT 59.564 38.462 0.00 0.00 31.22 4.75
113 114 6.434965 TCACTAAAAGGGGTTTATTTACTGCC 59.565 38.462 0.00 0.00 31.22 4.85
114 115 7.457024 TCACTAAAAGGGGTTTATTTACTGC 57.543 36.000 0.00 0.00 31.22 4.40
115 116 9.855021 CATTCACTAAAAGGGGTTTATTTACTG 57.145 33.333 0.00 0.00 31.22 2.74
116 117 9.816787 TCATTCACTAAAAGGGGTTTATTTACT 57.183 29.630 0.00 0.00 31.22 2.24
117 118 9.850628 GTCATTCACTAAAAGGGGTTTATTTAC 57.149 33.333 0.00 0.00 31.22 2.01
118 119 9.589461 TGTCATTCACTAAAAGGGGTTTATTTA 57.411 29.630 0.00 0.00 31.22 1.40
119 120 8.485578 TGTCATTCACTAAAAGGGGTTTATTT 57.514 30.769 0.00 0.00 31.22 1.40
120 121 8.664669 ATGTCATTCACTAAAAGGGGTTTATT 57.335 30.769 0.00 0.00 31.22 1.40
121 122 7.893302 TGATGTCATTCACTAAAAGGGGTTTAT 59.107 33.333 0.00 0.00 31.22 1.40
122 123 7.235079 TGATGTCATTCACTAAAAGGGGTTTA 58.765 34.615 0.00 0.00 0.00 2.01
123 124 6.074648 TGATGTCATTCACTAAAAGGGGTTT 58.925 36.000 0.00 0.00 0.00 3.27
124 125 5.640147 TGATGTCATTCACTAAAAGGGGTT 58.360 37.500 0.00 0.00 0.00 4.11
125 126 5.255397 TGATGTCATTCACTAAAAGGGGT 57.745 39.130 0.00 0.00 0.00 4.95
126 127 6.153340 ACAATGATGTCATTCACTAAAAGGGG 59.847 38.462 5.30 0.00 44.10 4.79
127 128 7.161773 ACAATGATGTCATTCACTAAAAGGG 57.838 36.000 5.30 0.00 44.10 3.95
142 143 1.063717 GGGGATGTGGGACAATGATGT 60.064 52.381 0.00 0.00 44.16 3.06
143 144 1.063792 TGGGGATGTGGGACAATGATG 60.064 52.381 0.00 0.00 44.16 3.07
144 145 1.307878 TGGGGATGTGGGACAATGAT 58.692 50.000 0.00 0.00 44.16 2.45
145 146 1.079796 TTGGGGATGTGGGACAATGA 58.920 50.000 0.00 0.00 44.16 2.57
146 147 2.163810 ATTGGGGATGTGGGACAATG 57.836 50.000 0.00 0.00 44.16 2.82
147 148 2.044215 TGAATTGGGGATGTGGGACAAT 59.956 45.455 0.00 0.00 44.16 2.71
148 149 1.430853 TGAATTGGGGATGTGGGACAA 59.569 47.619 0.00 0.00 44.16 3.18
149 150 1.079796 TGAATTGGGGATGTGGGACA 58.920 50.000 0.00 0.00 0.00 4.02
150 151 1.474330 GTGAATTGGGGATGTGGGAC 58.526 55.000 0.00 0.00 0.00 4.46
151 152 0.334676 GGTGAATTGGGGATGTGGGA 59.665 55.000 0.00 0.00 0.00 4.37
152 153 0.040942 TGGTGAATTGGGGATGTGGG 59.959 55.000 0.00 0.00 0.00 4.61
153 154 1.477553 CTGGTGAATTGGGGATGTGG 58.522 55.000 0.00 0.00 0.00 4.17
154 155 1.477553 CCTGGTGAATTGGGGATGTG 58.522 55.000 0.00 0.00 0.00 3.21
155 156 0.336048 CCCTGGTGAATTGGGGATGT 59.664 55.000 0.00 0.00 41.25 3.06
156 157 0.630673 TCCCTGGTGAATTGGGGATG 59.369 55.000 0.00 0.00 42.43 3.51
157 158 0.929244 CTCCCTGGTGAATTGGGGAT 59.071 55.000 0.00 0.00 45.65 3.85
158 159 1.863155 GCTCCCTGGTGAATTGGGGA 61.863 60.000 0.00 0.00 44.76 4.81
159 160 1.380380 GCTCCCTGGTGAATTGGGG 60.380 63.158 0.00 0.00 41.22 4.96
160 161 0.394899 GAGCTCCCTGGTGAATTGGG 60.395 60.000 0.87 0.00 42.20 4.12
161 162 0.394899 GGAGCTCCCTGGTGAATTGG 60.395 60.000 23.19 0.00 0.00 3.16
162 163 0.329261 TGGAGCTCCCTGGTGAATTG 59.671 55.000 29.95 0.00 35.38 2.32
163 164 1.302907 ATGGAGCTCCCTGGTGAATT 58.697 50.000 29.95 0.72 35.38 2.17
164 165 1.302907 AATGGAGCTCCCTGGTGAAT 58.697 50.000 29.95 11.94 35.38 2.57
165 166 1.004745 GAAATGGAGCTCCCTGGTGAA 59.995 52.381 29.95 9.88 35.38 3.18
166 167 0.620556 GAAATGGAGCTCCCTGGTGA 59.379 55.000 29.95 10.69 35.38 4.02
167 168 0.622665 AGAAATGGAGCTCCCTGGTG 59.377 55.000 29.95 0.00 35.38 4.17
168 169 1.005215 CAAGAAATGGAGCTCCCTGGT 59.995 52.381 29.95 12.52 35.38 4.00
169 170 1.760192 CAAGAAATGGAGCTCCCTGG 58.240 55.000 29.95 13.23 35.38 4.45
180 181 5.474876 ACAGTTTCTAAGCTCCCAAGAAATG 59.525 40.000 13.37 13.59 40.33 2.32
181 182 5.635120 ACAGTTTCTAAGCTCCCAAGAAAT 58.365 37.500 13.37 4.59 40.33 2.17
182 183 5.048846 ACAGTTTCTAAGCTCCCAAGAAA 57.951 39.130 8.57 8.57 37.00 2.52
183 184 4.706842 ACAGTTTCTAAGCTCCCAAGAA 57.293 40.909 0.00 0.00 0.00 2.52
184 185 5.818678 TTACAGTTTCTAAGCTCCCAAGA 57.181 39.130 0.00 0.00 0.00 3.02
185 186 6.231211 TCTTTACAGTTTCTAAGCTCCCAAG 58.769 40.000 0.00 0.00 0.00 3.61
186 187 6.182507 TCTTTACAGTTTCTAAGCTCCCAA 57.817 37.500 0.00 0.00 0.00 4.12
187 188 5.818678 TCTTTACAGTTTCTAAGCTCCCA 57.181 39.130 0.00 0.00 0.00 4.37
188 189 7.658167 GGATATCTTTACAGTTTCTAAGCTCCC 59.342 40.741 2.05 0.00 0.00 4.30
189 190 7.658167 GGGATATCTTTACAGTTTCTAAGCTCC 59.342 40.741 2.05 0.00 0.00 4.70
190 191 8.425703 AGGGATATCTTTACAGTTTCTAAGCTC 58.574 37.037 2.05 0.00 0.00 4.09
191 192 8.325477 AGGGATATCTTTACAGTTTCTAAGCT 57.675 34.615 2.05 0.00 0.00 3.74
238 239 9.433153 TCATTGAAGCATTGCAAATATAAACAA 57.567 25.926 11.91 5.38 0.00 2.83
239 240 8.871862 GTCATTGAAGCATTGCAAATATAAACA 58.128 29.630 11.91 0.00 0.00 2.83
240 241 9.090692 AGTCATTGAAGCATTGCAAATATAAAC 57.909 29.630 11.91 0.50 0.00 2.01
241 242 9.089601 CAGTCATTGAAGCATTGCAAATATAAA 57.910 29.630 11.91 0.00 0.00 1.40
242 243 8.252417 ACAGTCATTGAAGCATTGCAAATATAA 58.748 29.630 11.91 0.00 0.00 0.98
243 244 7.774134 ACAGTCATTGAAGCATTGCAAATATA 58.226 30.769 11.91 0.00 0.00 0.86
244 245 6.636705 ACAGTCATTGAAGCATTGCAAATAT 58.363 32.000 11.91 0.00 0.00 1.28
245 246 6.028146 ACAGTCATTGAAGCATTGCAAATA 57.972 33.333 11.91 0.00 0.00 1.40
246 247 4.890088 ACAGTCATTGAAGCATTGCAAAT 58.110 34.783 11.91 5.04 0.00 2.32
247 248 4.325028 ACAGTCATTGAAGCATTGCAAA 57.675 36.364 11.91 2.75 0.00 3.68
248 249 5.648178 ATACAGTCATTGAAGCATTGCAA 57.352 34.783 11.91 0.00 0.00 4.08
249 250 5.648178 AATACAGTCATTGAAGCATTGCA 57.352 34.783 11.91 0.00 0.00 4.08
250 251 6.690098 CAGTAATACAGTCATTGAAGCATTGC 59.310 38.462 0.00 0.00 0.00 3.56
251 252 7.066163 TCCAGTAATACAGTCATTGAAGCATTG 59.934 37.037 0.00 0.00 0.00 2.82
252 253 7.112122 TCCAGTAATACAGTCATTGAAGCATT 58.888 34.615 0.00 0.00 0.00 3.56
253 254 6.653020 TCCAGTAATACAGTCATTGAAGCAT 58.347 36.000 0.00 0.00 0.00 3.79
254 255 6.048732 TCCAGTAATACAGTCATTGAAGCA 57.951 37.500 0.00 0.00 0.00 3.91
255 256 7.412853 CAATCCAGTAATACAGTCATTGAAGC 58.587 38.462 0.00 0.00 0.00 3.86
256 257 7.770433 TCCAATCCAGTAATACAGTCATTGAAG 59.230 37.037 0.00 0.00 0.00 3.02
257 258 7.629157 TCCAATCCAGTAATACAGTCATTGAA 58.371 34.615 0.00 0.00 0.00 2.69
258 259 7.194112 TCCAATCCAGTAATACAGTCATTGA 57.806 36.000 0.00 0.00 0.00 2.57
259 260 9.730705 ATATCCAATCCAGTAATACAGTCATTG 57.269 33.333 0.00 0.00 0.00 2.82
260 261 9.730705 CATATCCAATCCAGTAATACAGTCATT 57.269 33.333 0.00 0.00 0.00 2.57
261 262 9.104713 TCATATCCAATCCAGTAATACAGTCAT 57.895 33.333 0.00 0.00 0.00 3.06
262 263 8.367911 GTCATATCCAATCCAGTAATACAGTCA 58.632 37.037 0.00 0.00 0.00 3.41
263 264 8.589338 AGTCATATCCAATCCAGTAATACAGTC 58.411 37.037 0.00 0.00 0.00 3.51
264 265 8.497910 AGTCATATCCAATCCAGTAATACAGT 57.502 34.615 0.00 0.00 0.00 3.55
269 270 8.696374 CGGTATAGTCATATCCAATCCAGTAAT 58.304 37.037 0.00 0.00 0.00 1.89
270 271 7.123697 CCGGTATAGTCATATCCAATCCAGTAA 59.876 40.741 0.00 0.00 0.00 2.24
271 272 6.605995 CCGGTATAGTCATATCCAATCCAGTA 59.394 42.308 0.00 0.00 0.00 2.74
272 273 5.422331 CCGGTATAGTCATATCCAATCCAGT 59.578 44.000 0.00 0.00 0.00 4.00
273 274 5.163405 CCCGGTATAGTCATATCCAATCCAG 60.163 48.000 0.00 0.00 0.00 3.86
274 275 4.714802 CCCGGTATAGTCATATCCAATCCA 59.285 45.833 0.00 0.00 0.00 3.41
275 276 4.443034 GCCCGGTATAGTCATATCCAATCC 60.443 50.000 0.00 0.00 0.00 3.01
276 277 4.161565 TGCCCGGTATAGTCATATCCAATC 59.838 45.833 0.00 0.00 0.00 2.67
277 278 4.101114 TGCCCGGTATAGTCATATCCAAT 58.899 43.478 0.00 0.00 0.00 3.16
278 279 3.512496 TGCCCGGTATAGTCATATCCAA 58.488 45.455 0.00 0.00 0.00 3.53
279 280 3.178412 TGCCCGGTATAGTCATATCCA 57.822 47.619 0.00 0.00 0.00 3.41
280 281 3.259876 TGTTGCCCGGTATAGTCATATCC 59.740 47.826 0.00 0.00 0.00 2.59
281 282 4.243270 GTGTTGCCCGGTATAGTCATATC 58.757 47.826 0.00 0.00 0.00 1.63
282 283 3.007614 GGTGTTGCCCGGTATAGTCATAT 59.992 47.826 0.00 0.00 0.00 1.78
283 284 2.366266 GGTGTTGCCCGGTATAGTCATA 59.634 50.000 0.00 0.00 0.00 2.15
284 285 1.140252 GGTGTTGCCCGGTATAGTCAT 59.860 52.381 0.00 0.00 0.00 3.06
285 286 0.538118 GGTGTTGCCCGGTATAGTCA 59.462 55.000 0.00 0.00 0.00 3.41
286 287 0.529119 CGGTGTTGCCCGGTATAGTC 60.529 60.000 0.00 0.00 44.32 2.59
287 288 1.518774 CGGTGTTGCCCGGTATAGT 59.481 57.895 0.00 0.00 44.32 2.12
288 289 4.431035 CGGTGTTGCCCGGTATAG 57.569 61.111 0.00 0.00 44.32 1.31
316 317 1.369091 ATCTTAAGTGCGGCTTGCCG 61.369 55.000 27.32 27.32 45.60 5.69
317 318 1.599542 CTATCTTAAGTGCGGCTTGCC 59.400 52.381 1.63 0.75 45.60 4.52
318 319 2.280628 ACTATCTTAAGTGCGGCTTGC 58.719 47.619 1.63 0.00 46.70 4.01
319 320 3.307242 GTGACTATCTTAAGTGCGGCTTG 59.693 47.826 1.63 0.00 38.05 4.01
320 321 3.195825 AGTGACTATCTTAAGTGCGGCTT 59.804 43.478 1.63 0.00 41.05 4.35
321 322 2.761208 AGTGACTATCTTAAGTGCGGCT 59.239 45.455 1.63 0.00 0.00 5.52
322 323 3.166489 AGTGACTATCTTAAGTGCGGC 57.834 47.619 1.63 0.00 0.00 6.53
323 324 5.274718 CACTAGTGACTATCTTAAGTGCGG 58.725 45.833 18.45 0.00 0.00 5.69
324 325 5.274718 CCACTAGTGACTATCTTAAGTGCG 58.725 45.833 24.68 0.00 33.26 5.34
325 326 5.452077 CCCCACTAGTGACTATCTTAAGTGC 60.452 48.000 24.68 0.00 33.26 4.40
326 327 5.892119 TCCCCACTAGTGACTATCTTAAGTG 59.108 44.000 24.68 4.40 34.15 3.16
327 328 6.088541 TCCCCACTAGTGACTATCTTAAGT 57.911 41.667 24.68 0.00 0.00 2.24
328 329 6.778069 TCATCCCCACTAGTGACTATCTTAAG 59.222 42.308 24.68 3.07 0.00 1.85
329 330 6.679542 TCATCCCCACTAGTGACTATCTTAA 58.320 40.000 24.68 0.00 0.00 1.85
330 331 6.275692 TCATCCCCACTAGTGACTATCTTA 57.724 41.667 24.68 0.00 0.00 2.10
331 332 5.144159 TCATCCCCACTAGTGACTATCTT 57.856 43.478 24.68 0.00 0.00 2.40
332 333 4.816048 TCATCCCCACTAGTGACTATCT 57.184 45.455 24.68 0.92 0.00 1.98
333 334 5.305644 ACATTCATCCCCACTAGTGACTATC 59.694 44.000 24.68 0.00 0.00 2.08
334 335 5.219739 ACATTCATCCCCACTAGTGACTAT 58.780 41.667 24.68 10.70 0.00 2.12
335 336 4.620723 ACATTCATCCCCACTAGTGACTA 58.379 43.478 24.68 8.81 0.00 2.59
336 337 3.454858 ACATTCATCCCCACTAGTGACT 58.545 45.455 24.68 2.71 0.00 3.41
337 338 3.914426 ACATTCATCCCCACTAGTGAC 57.086 47.619 24.68 0.00 0.00 3.67
338 339 7.619698 CCTATATACATTCATCCCCACTAGTGA 59.380 40.741 24.68 4.71 0.00 3.41
339 340 7.619698 TCCTATATACATTCATCCCCACTAGTG 59.380 40.741 16.34 16.34 0.00 2.74
340 341 7.719424 TCCTATATACATTCATCCCCACTAGT 58.281 38.462 0.00 0.00 0.00 2.57
341 342 8.789767 ATCCTATATACATTCATCCCCACTAG 57.210 38.462 0.00 0.00 0.00 2.57
343 344 9.163894 CATATCCTATATACATTCATCCCCACT 57.836 37.037 0.00 0.00 0.00 4.00
344 345 8.938883 ACATATCCTATATACATTCATCCCCAC 58.061 37.037 0.00 0.00 0.00 4.61
345 346 9.519488 AACATATCCTATATACATTCATCCCCA 57.481 33.333 0.00 0.00 0.00 4.96
497 498 9.520515 AGTATATGCTTATTTATTTCACCCCTG 57.479 33.333 0.00 0.00 0.00 4.45
515 516 6.346919 CCAAGCAAACTGATACGAGTATATGC 60.347 42.308 0.00 0.00 33.57 3.14
519 520 4.442706 CCCAAGCAAACTGATACGAGTAT 58.557 43.478 0.00 0.00 0.00 2.12
521 522 2.699954 CCCAAGCAAACTGATACGAGT 58.300 47.619 0.00 0.00 0.00 4.18
526 527 0.326595 TCGGCCCAAGCAAACTGATA 59.673 50.000 0.00 0.00 42.56 2.15
530 531 1.600916 GTCTCGGCCCAAGCAAACT 60.601 57.895 0.00 0.00 42.56 2.66
544 545 2.764439 AGGCCTAAAAACTCCGTCTC 57.236 50.000 1.29 0.00 0.00 3.36
546 547 4.438336 GCATTTAGGCCTAAAAACTCCGTC 60.438 45.833 35.41 17.09 38.38 4.79
548 549 3.694566 AGCATTTAGGCCTAAAAACTCCG 59.305 43.478 35.41 21.55 38.38 4.63
549 550 6.961360 ATAGCATTTAGGCCTAAAAACTCC 57.039 37.500 35.41 22.33 38.38 3.85
550 551 7.720074 ACCTATAGCATTTAGGCCTAAAAACTC 59.280 37.037 35.41 24.18 39.98 3.01
551 552 7.583625 ACCTATAGCATTTAGGCCTAAAAACT 58.416 34.615 35.41 32.69 39.98 2.66
552 553 7.720074 AGACCTATAGCATTTAGGCCTAAAAAC 59.280 37.037 35.41 28.92 39.98 2.43
553 554 7.719633 CAGACCTATAGCATTTAGGCCTAAAAA 59.280 37.037 35.41 20.93 39.98 1.94
554 555 7.224297 CAGACCTATAGCATTTAGGCCTAAAA 58.776 38.462 35.41 22.53 39.98 1.52
555 556 6.744339 GCAGACCTATAGCATTTAGGCCTAAA 60.744 42.308 34.29 34.29 39.98 1.85
556 557 5.280011 GCAGACCTATAGCATTTAGGCCTAA 60.280 44.000 21.68 21.68 39.98 2.69
557 558 4.223032 GCAGACCTATAGCATTTAGGCCTA 59.777 45.833 8.91 8.91 39.98 3.93
558 559 3.008485 GCAGACCTATAGCATTTAGGCCT 59.992 47.826 11.78 11.78 39.98 5.19
559 560 3.244561 TGCAGACCTATAGCATTTAGGCC 60.245 47.826 0.00 0.00 39.98 5.19
560 561 4.008074 TGCAGACCTATAGCATTTAGGC 57.992 45.455 6.55 0.00 39.98 3.93
561 562 5.468072 CACTTGCAGACCTATAGCATTTAGG 59.532 44.000 0.00 5.38 41.74 2.69
562 563 5.468072 CCACTTGCAGACCTATAGCATTTAG 59.532 44.000 0.00 0.00 38.19 1.85
563 564 5.368145 CCACTTGCAGACCTATAGCATTTA 58.632 41.667 0.00 0.00 38.19 1.40
564 565 4.202441 CCACTTGCAGACCTATAGCATTT 58.798 43.478 0.00 0.00 38.19 2.32
565 566 3.434167 CCCACTTGCAGACCTATAGCATT 60.434 47.826 0.00 0.00 38.19 3.56
566 567 2.105477 CCCACTTGCAGACCTATAGCAT 59.895 50.000 0.00 0.00 38.19 3.79
567 568 1.486310 CCCACTTGCAGACCTATAGCA 59.514 52.381 0.00 0.00 36.32 3.49
568 569 1.486726 ACCCACTTGCAGACCTATAGC 59.513 52.381 0.00 0.00 0.00 2.97
569 570 2.158900 CCACCCACTTGCAGACCTATAG 60.159 54.545 0.00 0.00 0.00 1.31
570 571 1.837439 CCACCCACTTGCAGACCTATA 59.163 52.381 0.00 0.00 0.00 1.31
571 572 0.620556 CCACCCACTTGCAGACCTAT 59.379 55.000 0.00 0.00 0.00 2.57
572 573 1.488705 CCCACCCACTTGCAGACCTA 61.489 60.000 0.00 0.00 0.00 3.08
573 574 2.833913 CCCACCCACTTGCAGACCT 61.834 63.158 0.00 0.00 0.00 3.85
579 580 4.090723 GGTTACCCACCCACTTGC 57.909 61.111 0.00 0.00 40.19 4.01
595 596 1.941403 ATGGTGGGCTGATTCTGGGG 61.941 60.000 0.00 0.00 0.00 4.96
596 597 0.466922 GATGGTGGGCTGATTCTGGG 60.467 60.000 0.00 0.00 0.00 4.45
598 599 1.676746 CAGATGGTGGGCTGATTCTG 58.323 55.000 0.00 0.00 34.06 3.02
600 601 3.106738 CCAGATGGTGGGCTGATTC 57.893 57.895 0.00 0.00 43.63 2.52
613 614 1.131638 TAGGATTCAAGCGCCCAGAT 58.868 50.000 2.29 0.00 0.00 2.90
617 618 1.101635 GGGTTAGGATTCAAGCGCCC 61.102 60.000 2.29 0.00 0.00 6.13
619 620 0.393808 TGGGGTTAGGATTCAAGCGC 60.394 55.000 0.00 0.00 37.00 5.92
620 621 1.209504 TCTGGGGTTAGGATTCAAGCG 59.790 52.381 0.00 0.00 0.00 4.68
628 633 2.605825 ATGGGATTCTGGGGTTAGGA 57.394 50.000 0.00 0.00 0.00 2.94
777 800 0.660595 CTAGTCAAGATACGCCGGCG 60.661 60.000 44.88 44.88 46.03 6.46
900 923 3.954662 AGGTAGGGATGGTGGATTATGT 58.045 45.455 0.00 0.00 0.00 2.29
938 961 3.009363 TGGAGAAATGGTCAAGAGATGCA 59.991 43.478 0.00 0.00 0.00 3.96
963 986 2.892425 CCTGAGGCACGCGGATTC 60.892 66.667 12.47 2.96 36.30 2.52
982 1008 2.181205 CATCTCGAGCAGAAGAACGAC 58.819 52.381 7.81 0.00 33.62 4.34
986 1012 0.179127 CCGCATCTCGAGCAGAAGAA 60.179 55.000 7.81 0.00 41.67 2.52
1041 1067 1.075151 GGGGAGACGGGAGAGGATT 60.075 63.158 0.00 0.00 0.00 3.01
1563 1589 6.350780 GGGAAACAAATGCTTCATCATCTTCT 60.351 38.462 0.00 0.00 0.00 2.85
1623 1649 1.881973 GTGAGAAAATGCAGACAGCCA 59.118 47.619 0.00 0.00 44.83 4.75
1724 1753 5.972327 ACCCTGAGATTTCTGAATGAGAT 57.028 39.130 0.00 0.00 0.00 2.75
1783 1812 2.178912 ACCACCAGTTCAACCATACG 57.821 50.000 0.00 0.00 0.00 3.06
1823 1852 6.417258 TGCTTCAATATCCATTCTTGACTGA 58.583 36.000 0.00 0.00 0.00 3.41
2125 2154 5.125739 AGGTTTGTCTACTACTGAAGATCCG 59.874 44.000 0.00 0.00 0.00 4.18
2617 3471 3.017048 TGCAATACATTAGGGCAGCTT 57.983 42.857 0.00 0.00 0.00 3.74
2722 3577 9.626045 GTGTCAAAAGAAAGAAAGAAAGAAGAA 57.374 29.630 0.00 0.00 0.00 2.52
2723 3578 8.792633 TGTGTCAAAAGAAAGAAAGAAAGAAGA 58.207 29.630 0.00 0.00 0.00 2.87
2724 3579 8.970691 TGTGTCAAAAGAAAGAAAGAAAGAAG 57.029 30.769 0.00 0.00 0.00 2.85
2725 3580 9.927668 AATGTGTCAAAAGAAAGAAAGAAAGAA 57.072 25.926 0.00 0.00 0.00 2.52
2726 3581 9.357652 CAATGTGTCAAAAGAAAGAAAGAAAGA 57.642 29.630 0.00 0.00 0.00 2.52
2727 3582 9.143631 ACAATGTGTCAAAAGAAAGAAAGAAAG 57.856 29.630 0.00 0.00 0.00 2.62
2728 3583 8.924691 CACAATGTGTCAAAAGAAAGAAAGAAA 58.075 29.630 5.00 0.00 0.00 2.52
3021 3898 9.936759 TCTTTTTCAGTTTACTTTTCACCATTT 57.063 25.926 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.